Multiple sequence alignment - TraesCS2B01G358300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G358300 chr2B 100.000 3269 0 0 1 3269 511146792 511150060 0.000000e+00 6037
1 TraesCS2B01G358300 chr7D 94.903 2845 127 12 1 2837 550636006 550638840 0.000000e+00 4434
2 TraesCS2B01G358300 chr5D 94.728 2845 132 7 1 2838 350369412 350366579 0.000000e+00 4407
3 TraesCS2B01G358300 chr5D 94.225 2840 149 6 1 2833 41771245 41768414 0.000000e+00 4322
4 TraesCS2B01G358300 chr6B 94.489 2849 140 9 1 2837 681901037 681903880 0.000000e+00 4375
5 TraesCS2B01G358300 chr6B 94.442 2843 143 9 1 2834 197818309 197815473 0.000000e+00 4361
6 TraesCS2B01G358300 chr7B 94.347 2848 139 9 1 2837 377873081 377875917 0.000000e+00 4348
7 TraesCS2B01G358300 chr7B 94.337 2843 147 7 2 2834 244886055 244883217 0.000000e+00 4346
8 TraesCS2B01G358300 chr4B 94.682 2802 142 4 1 2797 446326852 446329651 0.000000e+00 4342
9 TraesCS2B01G358300 chr5B 94.196 2843 149 9 1 2833 184289064 184291900 0.000000e+00 4322
10 TraesCS2B01G358300 chr2D 90.964 166 8 5 3027 3188 433027609 433027447 1.980000e-52 217
11 TraesCS2B01G358300 chr2A 88.889 135 9 4 3027 3158 554021939 554022070 9.390000e-36 161


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G358300 chr2B 511146792 511150060 3268 False 6037 6037 100.000 1 3269 1 chr2B.!!$F1 3268
1 TraesCS2B01G358300 chr7D 550636006 550638840 2834 False 4434 4434 94.903 1 2837 1 chr7D.!!$F1 2836
2 TraesCS2B01G358300 chr5D 350366579 350369412 2833 True 4407 4407 94.728 1 2838 1 chr5D.!!$R2 2837
3 TraesCS2B01G358300 chr5D 41768414 41771245 2831 True 4322 4322 94.225 1 2833 1 chr5D.!!$R1 2832
4 TraesCS2B01G358300 chr6B 681901037 681903880 2843 False 4375 4375 94.489 1 2837 1 chr6B.!!$F1 2836
5 TraesCS2B01G358300 chr6B 197815473 197818309 2836 True 4361 4361 94.442 1 2834 1 chr6B.!!$R1 2833
6 TraesCS2B01G358300 chr7B 377873081 377875917 2836 False 4348 4348 94.347 1 2837 1 chr7B.!!$F1 2836
7 TraesCS2B01G358300 chr7B 244883217 244886055 2838 True 4346 4346 94.337 2 2834 1 chr7B.!!$R1 2832
8 TraesCS2B01G358300 chr4B 446326852 446329651 2799 False 4342 4342 94.682 1 2797 1 chr4B.!!$F1 2796
9 TraesCS2B01G358300 chr5B 184289064 184291900 2836 False 4322 4322 94.196 1 2833 1 chr5B.!!$F1 2832

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
852 863 1.10992 TCCAGGACTCGCAGCCTATC 61.11 60.0 0.0 0.0 32.03 2.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2268 2313 0.1791 CCTCATCGATGAACACGGCT 60.179 55.0 27.09 0.0 36.18 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 72 1.495509 CCGCGTCGCTGAAAAATCA 59.504 52.632 16.36 0.00 0.00 2.57
93 95 1.564348 GGGAGGATTTTGGCTCACCTA 59.436 52.381 0.00 0.00 36.63 3.08
137 140 3.411517 CTCCCTCACCGCCCCAAT 61.412 66.667 0.00 0.00 0.00 3.16
346 356 2.290577 CCCCCTTTCTCTCTGTTCCTTG 60.291 54.545 0.00 0.00 0.00 3.61
417 427 1.824230 AGTGGTCTGATCTGTGAGCTC 59.176 52.381 6.82 6.82 0.00 4.09
498 508 7.575343 GCATGTGGTAGGCTAGATTAGTAGTAC 60.575 44.444 0.00 0.00 32.24 2.73
512 522 9.915629 AGATTAGTAGTACAGTTTGAAGTTGAG 57.084 33.333 2.52 0.00 0.00 3.02
588 598 6.373216 GGTAGTCCATTTGTAGCATGTTGTTA 59.627 38.462 0.00 0.00 0.00 2.41
604 614 8.116753 GCATGTTGTTAGTTGTAGATGTATGTC 58.883 37.037 0.00 0.00 0.00 3.06
611 621 6.537453 AGTTGTAGATGTATGTCTCTGCTT 57.463 37.500 0.00 0.00 0.00 3.91
709 720 2.811410 TGCTCCTGCTTTCATGGATTT 58.189 42.857 0.00 0.00 40.48 2.17
720 731 5.298276 GCTTTCATGGATTTTCCGGTATGTA 59.702 40.000 0.00 0.00 40.17 2.29
744 755 3.005554 GTGCTATGCTCACTGTCAATGT 58.994 45.455 0.00 0.00 0.00 2.71
799 810 4.708177 GCAAGATCTTAGTCAGGCCATTA 58.292 43.478 7.86 0.00 0.00 1.90
802 813 5.753721 AGATCTTAGTCAGGCCATTATCC 57.246 43.478 5.01 0.00 0.00 2.59
835 846 1.880027 AGTTTGCTCCATCGTTTGTCC 59.120 47.619 0.00 0.00 0.00 4.02
852 863 1.109920 TCCAGGACTCGCAGCCTATC 61.110 60.000 0.00 0.00 32.03 2.08
933 962 1.302033 CGTTGAGCCAACTCCTGCT 60.302 57.895 13.76 0.00 42.74 4.24
934 963 1.572085 CGTTGAGCCAACTCCTGCTG 61.572 60.000 13.76 0.00 42.74 4.41
935 964 1.601759 TTGAGCCAACTCCTGCTGC 60.602 57.895 0.00 0.00 42.74 5.25
936 965 2.060567 TTGAGCCAACTCCTGCTGCT 62.061 55.000 0.00 0.00 42.74 4.24
937 966 2.033757 AGCCAACTCCTGCTGCTG 59.966 61.111 0.00 0.00 36.23 4.41
938 967 3.745803 GCCAACTCCTGCTGCTGC 61.746 66.667 8.89 8.89 40.20 5.25
1032 1061 2.612604 CCGTTCATGTCCATGTTCGTA 58.387 47.619 17.52 0.00 39.72 3.43
1077 1106 5.718801 TCTCTAGTGGAGTTAGGACTGAT 57.281 43.478 3.16 0.00 42.40 2.90
1153 1183 2.743928 GGCAAGAGGTGTCTGCCG 60.744 66.667 0.00 0.00 37.30 5.69
1234 1264 4.148825 ACCTTAGCGGCGCCTCAG 62.149 66.667 30.40 20.88 35.61 3.35
1262 1292 3.935828 GAGAACACTTGCTCCATAGTTCC 59.064 47.826 0.00 0.00 36.84 3.62
1326 1356 2.685388 GCCCTCTTCCTTTTCATACTGC 59.315 50.000 0.00 0.00 0.00 4.40
1341 1371 1.754234 CTGCCCACCATTGCCTACC 60.754 63.158 0.00 0.00 0.00 3.18
1443 1474 2.143122 ACTACAACCAGATGCAACACG 58.857 47.619 0.00 0.00 0.00 4.49
1469 1500 3.551496 CTTCGGGCTGGCAACTGGA 62.551 63.158 2.88 0.00 35.79 3.86
1612 1643 2.787956 TGACCCCAACCATGATAGGAT 58.212 47.619 0.00 0.00 0.00 3.24
1841 1872 2.676471 GGGTTCGTTGCCATGGCT 60.676 61.111 35.53 0.00 42.51 4.75
1960 2002 2.202388 GGCGACGACGATGACGAA 60.202 61.111 12.29 0.00 42.66 3.85
2008 2050 6.252995 AGGGCTCAAAAACTATTTGATGGTA 58.747 36.000 4.28 0.00 37.72 3.25
2062 2106 2.353704 CCTCACGCTGATGGTGAACTTA 60.354 50.000 0.00 0.00 43.27 2.24
2097 2141 2.714250 ACACCCTCTTTTGGATGTGGTA 59.286 45.455 0.00 0.00 33.57 3.25
2282 2327 0.604073 TGGTAAGCCGTGTTCATCGA 59.396 50.000 0.00 0.00 37.67 3.59
2332 2377 1.985473 AGAAGCCAATGCACAAGTGA 58.015 45.000 4.04 0.00 41.13 3.41
2432 2477 2.433838 CAGAGGCAGCAGTGTCGG 60.434 66.667 0.00 0.00 31.53 4.79
2582 2627 2.346803 CTGTGATCGTTGTGGGTAAGG 58.653 52.381 0.00 0.00 0.00 2.69
2647 2692 2.033550 GCAACCAAACACCGTGTTCATA 59.966 45.455 17.11 0.00 40.14 2.15
2653 2698 0.248012 ACACCGTGTTCATATGCCGA 59.752 50.000 0.00 0.00 0.00 5.54
2739 2785 2.934801 GCAGGCAACCAAACAACTTGTT 60.935 45.455 1.00 1.00 39.23 2.83
2805 2851 2.847327 AGGCTATGCAATGCGACTAT 57.153 45.000 0.00 0.00 0.00 2.12
2838 2884 2.033448 CCAAACACGCCCCTAGCA 59.967 61.111 0.00 0.00 44.04 3.49
2839 2885 1.602323 CCAAACACGCCCCTAGCAA 60.602 57.895 0.00 0.00 44.04 3.91
2840 2886 1.175983 CCAAACACGCCCCTAGCAAA 61.176 55.000 0.00 0.00 44.04 3.68
2841 2887 0.887933 CAAACACGCCCCTAGCAAAT 59.112 50.000 0.00 0.00 44.04 2.32
2842 2888 0.887933 AAACACGCCCCTAGCAAATG 59.112 50.000 0.00 0.00 44.04 2.32
2843 2889 1.595093 AACACGCCCCTAGCAAATGC 61.595 55.000 0.00 0.00 44.04 3.56
2844 2890 2.045708 CACGCCCCTAGCAAATGCA 61.046 57.895 8.28 0.00 45.16 3.96
2845 2891 1.076777 ACGCCCCTAGCAAATGCAT 60.077 52.632 8.28 0.00 45.16 3.96
2846 2892 0.182537 ACGCCCCTAGCAAATGCATA 59.817 50.000 8.28 0.00 45.16 3.14
2847 2893 0.593128 CGCCCCTAGCAAATGCATAC 59.407 55.000 8.28 0.00 45.16 2.39
2848 2894 0.593128 GCCCCTAGCAAATGCATACG 59.407 55.000 8.28 0.00 45.16 3.06
2849 2895 1.813862 GCCCCTAGCAAATGCATACGA 60.814 52.381 8.28 0.00 45.16 3.43
2850 2896 2.571212 CCCCTAGCAAATGCATACGAA 58.429 47.619 8.28 0.00 45.16 3.85
2851 2897 2.549754 CCCCTAGCAAATGCATACGAAG 59.450 50.000 8.28 0.00 45.16 3.79
2852 2898 3.466836 CCCTAGCAAATGCATACGAAGA 58.533 45.455 8.28 0.00 45.16 2.87
2853 2899 3.876914 CCCTAGCAAATGCATACGAAGAA 59.123 43.478 8.28 0.00 45.16 2.52
2854 2900 4.335315 CCCTAGCAAATGCATACGAAGAAA 59.665 41.667 8.28 0.00 45.16 2.52
2855 2901 5.163663 CCCTAGCAAATGCATACGAAGAAAA 60.164 40.000 8.28 0.00 45.16 2.29
2856 2902 6.460123 CCCTAGCAAATGCATACGAAGAAAAT 60.460 38.462 8.28 0.00 45.16 1.82
2857 2903 7.255104 CCCTAGCAAATGCATACGAAGAAAATA 60.255 37.037 8.28 0.00 45.16 1.40
2858 2904 7.587757 CCTAGCAAATGCATACGAAGAAAATAC 59.412 37.037 8.28 0.00 45.16 1.89
2859 2905 7.088589 AGCAAATGCATACGAAGAAAATACT 57.911 32.000 8.28 0.00 45.16 2.12
2860 2906 8.208718 AGCAAATGCATACGAAGAAAATACTA 57.791 30.769 8.28 0.00 45.16 1.82
2861 2907 8.338259 AGCAAATGCATACGAAGAAAATACTAG 58.662 33.333 8.28 0.00 45.16 2.57
2862 2908 7.112148 GCAAATGCATACGAAGAAAATACTAGC 59.888 37.037 0.00 0.00 41.59 3.42
2863 2909 5.883328 TGCATACGAAGAAAATACTAGCG 57.117 39.130 0.00 0.00 0.00 4.26
2864 2910 5.584442 TGCATACGAAGAAAATACTAGCGA 58.416 37.500 0.00 0.00 0.00 4.93
2865 2911 5.457799 TGCATACGAAGAAAATACTAGCGAC 59.542 40.000 0.00 0.00 0.00 5.19
2866 2912 5.457799 GCATACGAAGAAAATACTAGCGACA 59.542 40.000 0.00 0.00 0.00 4.35
2867 2913 6.020121 GCATACGAAGAAAATACTAGCGACAA 60.020 38.462 0.00 0.00 0.00 3.18
2868 2914 7.306632 GCATACGAAGAAAATACTAGCGACAAT 60.307 37.037 0.00 0.00 0.00 2.71
2869 2915 9.177304 CATACGAAGAAAATACTAGCGACAATA 57.823 33.333 0.00 0.00 0.00 1.90
2870 2916 7.447243 ACGAAGAAAATACTAGCGACAATAC 57.553 36.000 0.00 0.00 0.00 1.89
2871 2917 7.031372 ACGAAGAAAATACTAGCGACAATACA 58.969 34.615 0.00 0.00 0.00 2.29
2872 2918 7.705325 ACGAAGAAAATACTAGCGACAATACAT 59.295 33.333 0.00 0.00 0.00 2.29
2873 2919 9.177304 CGAAGAAAATACTAGCGACAATACATA 57.823 33.333 0.00 0.00 0.00 2.29
2883 2929 8.013947 ACTAGCGACAATACATAGTTACATACG 58.986 37.037 0.00 0.00 0.00 3.06
2884 2930 6.147581 AGCGACAATACATAGTTACATACGG 58.852 40.000 0.00 0.00 0.00 4.02
2885 2931 5.916883 GCGACAATACATAGTTACATACGGT 59.083 40.000 0.00 0.00 0.00 4.83
2886 2932 6.129273 GCGACAATACATAGTTACATACGGTG 60.129 42.308 0.00 0.00 0.00 4.94
2887 2933 6.129273 CGACAATACATAGTTACATACGGTGC 60.129 42.308 0.00 0.00 0.00 5.01
2888 2934 5.987347 ACAATACATAGTTACATACGGTGCC 59.013 40.000 0.00 0.00 0.00 5.01
2889 2935 3.464111 ACATAGTTACATACGGTGCCC 57.536 47.619 0.00 0.00 0.00 5.36
2890 2936 2.103601 ACATAGTTACATACGGTGCCCC 59.896 50.000 0.00 0.00 0.00 5.80
2891 2937 2.163810 TAGTTACATACGGTGCCCCT 57.836 50.000 0.00 0.00 0.00 4.79
2892 2938 1.282382 AGTTACATACGGTGCCCCTT 58.718 50.000 0.00 0.00 0.00 3.95
2893 2939 1.065709 AGTTACATACGGTGCCCCTTG 60.066 52.381 0.00 0.00 0.00 3.61
2894 2940 0.393267 TTACATACGGTGCCCCTTGC 60.393 55.000 0.00 0.00 41.77 4.01
2895 2941 2.581208 TACATACGGTGCCCCTTGCG 62.581 60.000 0.00 0.00 45.60 4.85
2896 2942 3.395702 ATACGGTGCCCCTTGCGA 61.396 61.111 0.00 0.00 45.60 5.10
2897 2943 2.742116 ATACGGTGCCCCTTGCGAT 61.742 57.895 0.00 0.00 45.60 4.58
2898 2944 2.940890 ATACGGTGCCCCTTGCGATG 62.941 60.000 0.00 0.00 45.60 3.84
2901 2947 4.120331 GTGCCCCTTGCGATGCAC 62.120 66.667 7.41 7.41 46.09 4.57
2904 2950 3.443045 CCCCTTGCGATGCACCAC 61.443 66.667 0.00 0.00 38.71 4.16
2905 2951 3.803082 CCCTTGCGATGCACCACG 61.803 66.667 0.00 0.00 38.71 4.94
2906 2952 2.741985 CCTTGCGATGCACCACGA 60.742 61.111 12.67 0.00 38.71 4.35
2907 2953 2.476051 CTTGCGATGCACCACGAC 59.524 61.111 12.67 5.87 38.71 4.34
2908 2954 2.029288 CTTGCGATGCACCACGACT 61.029 57.895 12.67 0.00 38.71 4.18
2909 2955 1.568612 CTTGCGATGCACCACGACTT 61.569 55.000 12.67 0.00 38.71 3.01
2910 2956 1.163420 TTGCGATGCACCACGACTTT 61.163 50.000 12.67 0.00 38.71 2.66
2911 2957 0.319986 TGCGATGCACCACGACTTTA 60.320 50.000 12.67 0.00 31.71 1.85
2912 2958 1.006832 GCGATGCACCACGACTTTAT 58.993 50.000 12.67 0.00 0.00 1.40
2913 2959 1.267532 GCGATGCACCACGACTTTATG 60.268 52.381 12.67 0.00 0.00 1.90
2914 2960 2.267426 CGATGCACCACGACTTTATGA 58.733 47.619 0.00 0.00 0.00 2.15
2915 2961 2.029244 CGATGCACCACGACTTTATGAC 59.971 50.000 0.00 0.00 0.00 3.06
2916 2962 2.535012 TGCACCACGACTTTATGACA 57.465 45.000 0.00 0.00 0.00 3.58
2917 2963 3.052455 TGCACCACGACTTTATGACAT 57.948 42.857 0.00 0.00 0.00 3.06
2918 2964 2.741517 TGCACCACGACTTTATGACATG 59.258 45.455 0.00 0.00 0.00 3.21
2919 2965 2.095853 GCACCACGACTTTATGACATGG 59.904 50.000 0.00 0.00 0.00 3.66
2920 2966 3.595173 CACCACGACTTTATGACATGGA 58.405 45.455 0.00 0.00 0.00 3.41
2921 2967 3.370978 CACCACGACTTTATGACATGGAC 59.629 47.826 0.00 0.00 0.00 4.02
2922 2968 3.007506 ACCACGACTTTATGACATGGACA 59.992 43.478 0.00 0.00 0.00 4.02
2923 2969 4.191544 CCACGACTTTATGACATGGACAT 58.808 43.478 11.29 11.29 0.00 3.06
2924 2970 4.271049 CCACGACTTTATGACATGGACATC 59.729 45.833 10.16 0.00 0.00 3.06
2925 2971 4.869861 CACGACTTTATGACATGGACATCA 59.130 41.667 10.16 0.00 0.00 3.07
2926 2972 5.525012 CACGACTTTATGACATGGACATCAT 59.475 40.000 10.16 6.39 38.99 2.45
2927 2973 6.037500 CACGACTTTATGACATGGACATCATT 59.962 38.462 10.16 0.00 36.87 2.57
2928 2974 6.258727 ACGACTTTATGACATGGACATCATTC 59.741 38.462 10.16 0.00 36.87 2.67
2929 2975 6.258507 CGACTTTATGACATGGACATCATTCA 59.741 38.462 10.16 0.00 36.87 2.57
2930 2976 7.201635 CGACTTTATGACATGGACATCATTCAA 60.202 37.037 10.16 1.41 36.87 2.69
2931 2977 7.765307 ACTTTATGACATGGACATCATTCAAC 58.235 34.615 10.16 0.00 36.87 3.18
2932 2978 7.613022 ACTTTATGACATGGACATCATTCAACT 59.387 33.333 10.16 0.00 36.87 3.16
2933 2979 5.830000 ATGACATGGACATCATTCAACTG 57.170 39.130 0.00 0.00 31.33 3.16
2934 2980 3.441222 TGACATGGACATCATTCAACTGC 59.559 43.478 0.00 0.00 32.92 4.40
2935 2981 3.423749 ACATGGACATCATTCAACTGCA 58.576 40.909 0.00 0.00 32.92 4.41
2936 2982 4.021229 ACATGGACATCATTCAACTGCAT 58.979 39.130 0.00 0.00 32.92 3.96
2937 2983 5.195185 ACATGGACATCATTCAACTGCATA 58.805 37.500 0.00 0.00 32.92 3.14
2938 2984 5.653330 ACATGGACATCATTCAACTGCATAA 59.347 36.000 0.00 0.00 32.92 1.90
2939 2985 6.322969 ACATGGACATCATTCAACTGCATAAT 59.677 34.615 0.00 0.00 32.92 1.28
2940 2986 6.778834 TGGACATCATTCAACTGCATAATT 57.221 33.333 0.00 0.00 0.00 1.40
2941 2987 6.798482 TGGACATCATTCAACTGCATAATTC 58.202 36.000 0.00 0.00 0.00 2.17
2942 2988 6.604396 TGGACATCATTCAACTGCATAATTCT 59.396 34.615 0.00 0.00 0.00 2.40
2943 2989 6.916387 GGACATCATTCAACTGCATAATTCTG 59.084 38.462 0.00 0.00 0.00 3.02
2944 2990 6.270815 ACATCATTCAACTGCATAATTCTGC 58.729 36.000 8.78 8.78 42.62 4.26
2952 2998 3.015675 TGCATAATTCTGCATGGACCA 57.984 42.857 13.95 0.00 46.76 4.02
2953 2999 2.689471 TGCATAATTCTGCATGGACCAC 59.311 45.455 13.95 0.00 46.76 4.16
2954 3000 2.035066 GCATAATTCTGCATGGACCACC 59.965 50.000 10.68 0.00 41.87 4.61
2955 3001 2.036958 TAATTCTGCATGGACCACCG 57.963 50.000 0.00 0.00 39.42 4.94
2956 3002 0.038166 AATTCTGCATGGACCACCGT 59.962 50.000 0.00 0.00 39.42 4.83
2957 3003 0.392998 ATTCTGCATGGACCACCGTC 60.393 55.000 0.00 0.00 39.42 4.79
2958 3004 2.779951 TTCTGCATGGACCACCGTCG 62.780 60.000 0.00 0.00 40.17 5.12
2959 3005 4.386951 TGCATGGACCACCGTCGG 62.387 66.667 10.48 10.48 40.17 4.79
2977 3023 2.361610 CCTGGCCTGTTGCGGAAT 60.362 61.111 3.32 0.00 42.61 3.01
2978 3024 1.077787 CCTGGCCTGTTGCGGAATA 60.078 57.895 3.32 0.00 42.61 1.75
2979 3025 0.679640 CCTGGCCTGTTGCGGAATAA 60.680 55.000 3.32 0.00 42.61 1.40
2980 3026 1.173043 CTGGCCTGTTGCGGAATAAA 58.827 50.000 3.32 0.00 42.61 1.40
2981 3027 0.885196 TGGCCTGTTGCGGAATAAAC 59.115 50.000 3.32 0.00 42.61 2.01
2982 3028 0.179174 GGCCTGTTGCGGAATAAACG 60.179 55.000 0.00 0.00 42.61 3.60
2992 3038 1.329599 CGGAATAAACGCCCTTGTAGC 59.670 52.381 0.00 0.00 0.00 3.58
2993 3039 2.640184 GGAATAAACGCCCTTGTAGCT 58.360 47.619 0.00 0.00 0.00 3.32
2994 3040 3.014623 GGAATAAACGCCCTTGTAGCTT 58.985 45.455 0.00 0.00 0.00 3.74
2995 3041 3.181500 GGAATAAACGCCCTTGTAGCTTG 60.181 47.826 0.00 0.00 0.00 4.01
2996 3042 2.554370 TAAACGCCCTTGTAGCTTGT 57.446 45.000 0.00 0.00 0.00 3.16
2997 3043 0.951558 AAACGCCCTTGTAGCTTGTG 59.048 50.000 0.00 0.00 0.00 3.33
2998 3044 0.889186 AACGCCCTTGTAGCTTGTGG 60.889 55.000 0.00 0.00 0.00 4.17
2999 3045 2.690778 CGCCCTTGTAGCTTGTGGC 61.691 63.158 0.00 0.00 42.19 5.01
3000 3046 1.603455 GCCCTTGTAGCTTGTGGCA 60.603 57.895 0.00 0.00 44.79 4.92
3001 3047 0.967380 GCCCTTGTAGCTTGTGGCAT 60.967 55.000 0.00 0.00 44.79 4.40
3002 3048 1.549203 CCCTTGTAGCTTGTGGCATT 58.451 50.000 0.00 0.00 44.79 3.56
3003 3049 1.895131 CCCTTGTAGCTTGTGGCATTT 59.105 47.619 0.00 0.00 44.79 2.32
3004 3050 3.088532 CCCTTGTAGCTTGTGGCATTTA 58.911 45.455 0.00 0.00 44.79 1.40
3005 3051 3.701040 CCCTTGTAGCTTGTGGCATTTAT 59.299 43.478 0.00 0.00 44.79 1.40
3006 3052 4.202050 CCCTTGTAGCTTGTGGCATTTATC 60.202 45.833 0.00 0.00 44.79 1.75
3007 3053 4.398988 CCTTGTAGCTTGTGGCATTTATCA 59.601 41.667 0.00 0.00 44.79 2.15
3008 3054 5.105797 CCTTGTAGCTTGTGGCATTTATCAA 60.106 40.000 0.00 0.00 44.79 2.57
3009 3055 5.565592 TGTAGCTTGTGGCATTTATCAAG 57.434 39.130 9.68 9.68 44.79 3.02
3010 3056 5.252547 TGTAGCTTGTGGCATTTATCAAGA 58.747 37.500 16.30 0.00 44.79 3.02
3011 3057 5.709631 TGTAGCTTGTGGCATTTATCAAGAA 59.290 36.000 16.30 3.49 44.79 2.52
3012 3058 5.064441 AGCTTGTGGCATTTATCAAGAAC 57.936 39.130 16.30 2.74 44.79 3.01
3013 3059 4.523943 AGCTTGTGGCATTTATCAAGAACA 59.476 37.500 16.30 0.00 44.79 3.18
3014 3060 5.010922 AGCTTGTGGCATTTATCAAGAACAA 59.989 36.000 16.30 0.00 44.79 2.83
3015 3061 5.695816 GCTTGTGGCATTTATCAAGAACAAA 59.304 36.000 16.30 0.00 39.39 2.83
3016 3062 6.202570 GCTTGTGGCATTTATCAAGAACAAAA 59.797 34.615 16.30 0.00 39.39 2.44
3017 3063 7.095102 GCTTGTGGCATTTATCAAGAACAAAAT 60.095 33.333 16.30 0.00 39.39 1.82
3018 3064 8.674263 TTGTGGCATTTATCAAGAACAAAATT 57.326 26.923 0.00 0.00 0.00 1.82
3019 3065 8.674263 TGTGGCATTTATCAAGAACAAAATTT 57.326 26.923 0.00 0.00 0.00 1.82
3020 3066 8.557864 TGTGGCATTTATCAAGAACAAAATTTG 58.442 29.630 3.89 3.89 0.00 2.32
3021 3067 8.016801 GTGGCATTTATCAAGAACAAAATTTGG 58.983 33.333 10.71 0.00 34.12 3.28
3022 3068 7.174599 TGGCATTTATCAAGAACAAAATTTGGG 59.825 33.333 10.71 0.00 34.12 4.12
3023 3069 7.390162 GGCATTTATCAAGAACAAAATTTGGGA 59.610 33.333 10.71 0.56 34.12 4.37
3024 3070 8.782144 GCATTTATCAAGAACAAAATTTGGGAA 58.218 29.630 10.71 0.00 34.12 3.97
3027 3073 9.844257 TTTATCAAGAACAAAATTTGGGAATGT 57.156 25.926 10.71 0.00 34.12 2.71
3028 3074 7.733402 ATCAAGAACAAAATTTGGGAATGTG 57.267 32.000 10.71 1.22 34.12 3.21
3029 3075 6.648192 TCAAGAACAAAATTTGGGAATGTGT 58.352 32.000 10.71 0.00 34.12 3.72
3030 3076 7.786030 TCAAGAACAAAATTTGGGAATGTGTA 58.214 30.769 10.71 0.00 34.12 2.90
3031 3077 8.260818 TCAAGAACAAAATTTGGGAATGTGTAA 58.739 29.630 10.71 0.00 34.12 2.41
3032 3078 8.887717 CAAGAACAAAATTTGGGAATGTGTAAA 58.112 29.630 10.71 0.00 34.12 2.01
3033 3079 9.625747 AAGAACAAAATTTGGGAATGTGTAAAT 57.374 25.926 10.71 0.00 34.12 1.40
3034 3080 9.054922 AGAACAAAATTTGGGAATGTGTAAATG 57.945 29.630 10.71 0.00 34.12 2.32
3035 3081 8.970859 AACAAAATTTGGGAATGTGTAAATGA 57.029 26.923 10.71 0.00 34.12 2.57
3036 3082 8.970859 ACAAAATTTGGGAATGTGTAAATGAA 57.029 26.923 10.71 0.00 34.12 2.57
3037 3083 9.401058 ACAAAATTTGGGAATGTGTAAATGAAA 57.599 25.926 10.71 0.00 34.12 2.69
3038 3084 9.881529 CAAAATTTGGGAATGTGTAAATGAAAG 57.118 29.630 0.00 0.00 0.00 2.62
3039 3085 7.671495 AATTTGGGAATGTGTAAATGAAAGC 57.329 32.000 0.00 0.00 0.00 3.51
3040 3086 5.798125 TTGGGAATGTGTAAATGAAAGCA 57.202 34.783 0.00 0.00 0.00 3.91
3041 3087 5.999205 TGGGAATGTGTAAATGAAAGCAT 57.001 34.783 0.00 0.00 35.92 3.79
3042 3088 7.473735 TTGGGAATGTGTAAATGAAAGCATA 57.526 32.000 0.00 0.00 33.44 3.14
3043 3089 7.099266 TGGGAATGTGTAAATGAAAGCATAG 57.901 36.000 0.00 0.00 33.44 2.23
3044 3090 6.663093 TGGGAATGTGTAAATGAAAGCATAGT 59.337 34.615 0.00 0.00 33.44 2.12
3045 3091 6.974622 GGGAATGTGTAAATGAAAGCATAGTG 59.025 38.462 0.00 0.00 33.44 2.74
3046 3092 6.974622 GGAATGTGTAAATGAAAGCATAGTGG 59.025 38.462 0.00 0.00 33.44 4.00
3047 3093 5.309323 TGTGTAAATGAAAGCATAGTGGC 57.691 39.130 0.00 0.00 33.44 5.01
3048 3094 4.142708 TGTGTAAATGAAAGCATAGTGGCG 60.143 41.667 0.00 0.00 39.27 5.69
3049 3095 4.094294 GTGTAAATGAAAGCATAGTGGCGA 59.906 41.667 0.00 0.00 39.27 5.54
3050 3096 3.764885 AAATGAAAGCATAGTGGCGAC 57.235 42.857 0.00 0.00 39.27 5.19
3051 3097 2.698855 ATGAAAGCATAGTGGCGACT 57.301 45.000 6.61 6.61 39.27 4.18
3052 3098 2.010145 TGAAAGCATAGTGGCGACTC 57.990 50.000 4.00 0.00 39.27 3.36
3053 3099 1.275010 TGAAAGCATAGTGGCGACTCA 59.725 47.619 4.00 0.00 39.27 3.41
3054 3100 1.661112 GAAAGCATAGTGGCGACTCAC 59.339 52.381 4.00 0.00 39.27 3.51
3056 3102 0.457851 AGCATAGTGGCGACTCACTC 59.542 55.000 4.00 0.00 43.82 3.51
3057 3103 0.457851 GCATAGTGGCGACTCACTCT 59.542 55.000 4.00 0.00 43.82 3.24
3058 3104 1.134965 GCATAGTGGCGACTCACTCTT 60.135 52.381 4.00 0.00 43.82 2.85
3059 3105 2.534298 CATAGTGGCGACTCACTCTTG 58.466 52.381 4.00 0.00 43.82 3.02
3060 3106 0.888619 TAGTGGCGACTCACTCTTGG 59.111 55.000 4.00 0.00 43.82 3.61
3061 3107 1.115930 AGTGGCGACTCACTCTTGGT 61.116 55.000 0.00 0.00 43.82 3.67
3062 3108 0.946221 GTGGCGACTCACTCTTGGTG 60.946 60.000 0.00 0.00 46.60 4.17
3063 3109 1.367840 GGCGACTCACTCTTGGTGT 59.632 57.895 0.00 0.00 45.50 4.16
3064 3110 0.249911 GGCGACTCACTCTTGGTGTT 60.250 55.000 0.00 0.00 45.50 3.32
3065 3111 1.140816 GCGACTCACTCTTGGTGTTC 58.859 55.000 0.00 0.00 45.50 3.18
3066 3112 1.784525 CGACTCACTCTTGGTGTTCC 58.215 55.000 0.00 0.00 45.50 3.62
3067 3113 1.605712 CGACTCACTCTTGGTGTTCCC 60.606 57.143 0.00 0.00 45.50 3.97
3068 3114 0.765510 ACTCACTCTTGGTGTTCCCC 59.234 55.000 0.00 0.00 45.50 4.81
3069 3115 1.059913 CTCACTCTTGGTGTTCCCCT 58.940 55.000 0.00 0.00 45.50 4.79
3070 3116 1.421646 CTCACTCTTGGTGTTCCCCTT 59.578 52.381 0.00 0.00 45.50 3.95
3071 3117 1.420138 TCACTCTTGGTGTTCCCCTTC 59.580 52.381 0.00 0.00 45.50 3.46
3072 3118 1.421646 CACTCTTGGTGTTCCCCTTCT 59.578 52.381 0.00 0.00 40.79 2.85
3073 3119 1.421646 ACTCTTGGTGTTCCCCTTCTG 59.578 52.381 0.00 0.00 0.00 3.02
3074 3120 0.110486 TCTTGGTGTTCCCCTTCTGC 59.890 55.000 0.00 0.00 0.00 4.26
3075 3121 0.178992 CTTGGTGTTCCCCTTCTGCA 60.179 55.000 0.00 0.00 0.00 4.41
3076 3122 0.260230 TTGGTGTTCCCCTTCTGCAA 59.740 50.000 0.00 0.00 0.00 4.08
3077 3123 0.178992 TGGTGTTCCCCTTCTGCAAG 60.179 55.000 0.00 0.00 0.00 4.01
3078 3124 0.178990 GGTGTTCCCCTTCTGCAAGT 60.179 55.000 0.00 0.00 33.76 3.16
3079 3125 1.073284 GGTGTTCCCCTTCTGCAAGTA 59.927 52.381 0.00 0.00 33.76 2.24
3080 3126 2.427506 GTGTTCCCCTTCTGCAAGTAG 58.572 52.381 0.00 0.00 33.76 2.57
3085 3131 2.755929 CCTTCTGCAAGTAGGCGTC 58.244 57.895 0.00 0.00 44.80 5.19
3086 3132 0.741221 CCTTCTGCAAGTAGGCGTCC 60.741 60.000 0.00 0.00 44.80 4.79
3087 3133 0.741221 CTTCTGCAAGTAGGCGTCCC 60.741 60.000 0.00 0.00 36.28 4.46
3088 3134 2.125106 CTGCAAGTAGGCGTCCCC 60.125 66.667 0.00 0.00 36.28 4.81
3089 3135 4.077184 TGCAAGTAGGCGTCCCCG 62.077 66.667 0.00 0.00 39.21 5.73
3090 3136 4.078516 GCAAGTAGGCGTCCCCGT 62.079 66.667 0.00 0.00 39.21 5.28
3091 3137 2.183555 CAAGTAGGCGTCCCCGTC 59.816 66.667 0.00 0.00 39.53 4.79
3102 3148 4.803426 CCCCGTCTGCTGCGTCTC 62.803 72.222 0.00 0.00 0.00 3.36
3103 3149 4.803426 CCCGTCTGCTGCGTCTCC 62.803 72.222 0.00 0.00 0.00 3.71
3104 3150 3.753434 CCGTCTGCTGCGTCTCCT 61.753 66.667 0.00 0.00 0.00 3.69
3105 3151 2.202544 CGTCTGCTGCGTCTCCTC 60.203 66.667 0.00 0.00 0.00 3.71
3106 3152 2.695759 CGTCTGCTGCGTCTCCTCT 61.696 63.158 0.00 0.00 0.00 3.69
3107 3153 1.138671 GTCTGCTGCGTCTCCTCTC 59.861 63.158 0.00 0.00 0.00 3.20
3108 3154 1.001517 TCTGCTGCGTCTCCTCTCT 60.002 57.895 0.00 0.00 0.00 3.10
3109 3155 1.029408 TCTGCTGCGTCTCCTCTCTC 61.029 60.000 0.00 0.00 0.00 3.20
3110 3156 1.001517 TGCTGCGTCTCCTCTCTCT 60.002 57.895 0.00 0.00 0.00 3.10
3111 3157 0.610509 TGCTGCGTCTCCTCTCTCTT 60.611 55.000 0.00 0.00 0.00 2.85
3112 3158 0.100503 GCTGCGTCTCCTCTCTCTTC 59.899 60.000 0.00 0.00 0.00 2.87
3113 3159 1.750193 CTGCGTCTCCTCTCTCTTCT 58.250 55.000 0.00 0.00 0.00 2.85
3114 3160 2.912771 CTGCGTCTCCTCTCTCTTCTA 58.087 52.381 0.00 0.00 0.00 2.10
3115 3161 3.476552 CTGCGTCTCCTCTCTCTTCTAT 58.523 50.000 0.00 0.00 0.00 1.98
3116 3162 3.472652 TGCGTCTCCTCTCTCTTCTATC 58.527 50.000 0.00 0.00 0.00 2.08
3117 3163 2.812011 GCGTCTCCTCTCTCTTCTATCC 59.188 54.545 0.00 0.00 0.00 2.59
3118 3164 3.496160 GCGTCTCCTCTCTCTTCTATCCT 60.496 52.174 0.00 0.00 0.00 3.24
3119 3165 4.714632 CGTCTCCTCTCTCTTCTATCCTT 58.285 47.826 0.00 0.00 0.00 3.36
3120 3166 4.515191 CGTCTCCTCTCTCTTCTATCCTTG 59.485 50.000 0.00 0.00 0.00 3.61
3121 3167 4.278419 GTCTCCTCTCTCTTCTATCCTTGC 59.722 50.000 0.00 0.00 0.00 4.01
3122 3168 4.079500 TCTCCTCTCTCTTCTATCCTTGCA 60.080 45.833 0.00 0.00 0.00 4.08
3123 3169 4.614475 TCCTCTCTCTTCTATCCTTGCAA 58.386 43.478 0.00 0.00 0.00 4.08
3124 3170 5.215069 TCCTCTCTCTTCTATCCTTGCAAT 58.785 41.667 0.00 0.00 0.00 3.56
3125 3171 5.664908 TCCTCTCTCTTCTATCCTTGCAATT 59.335 40.000 0.00 0.00 0.00 2.32
3126 3172 6.157645 TCCTCTCTCTTCTATCCTTGCAATTT 59.842 38.462 0.00 0.00 0.00 1.82
3127 3173 7.345653 TCCTCTCTCTTCTATCCTTGCAATTTA 59.654 37.037 0.00 0.00 0.00 1.40
3128 3174 8.156165 CCTCTCTCTTCTATCCTTGCAATTTAT 58.844 37.037 0.00 0.00 0.00 1.40
3129 3175 8.899427 TCTCTCTTCTATCCTTGCAATTTATG 57.101 34.615 0.00 0.00 0.00 1.90
3130 3176 8.489489 TCTCTCTTCTATCCTTGCAATTTATGT 58.511 33.333 0.00 0.00 0.00 2.29
3131 3177 8.668510 TCTCTTCTATCCTTGCAATTTATGTC 57.331 34.615 0.00 0.00 0.00 3.06
3132 3178 8.489489 TCTCTTCTATCCTTGCAATTTATGTCT 58.511 33.333 0.00 0.00 0.00 3.41
3133 3179 8.668510 TCTTCTATCCTTGCAATTTATGTCTC 57.331 34.615 0.00 0.00 0.00 3.36
3134 3180 7.716998 TCTTCTATCCTTGCAATTTATGTCTCC 59.283 37.037 0.00 0.00 0.00 3.71
3135 3181 7.141758 TCTATCCTTGCAATTTATGTCTCCT 57.858 36.000 0.00 0.00 0.00 3.69
3136 3182 7.220030 TCTATCCTTGCAATTTATGTCTCCTC 58.780 38.462 0.00 0.00 0.00 3.71
3137 3183 5.441718 TCCTTGCAATTTATGTCTCCTCT 57.558 39.130 0.00 0.00 0.00 3.69
3138 3184 5.431765 TCCTTGCAATTTATGTCTCCTCTC 58.568 41.667 0.00 0.00 0.00 3.20
3139 3185 5.045651 TCCTTGCAATTTATGTCTCCTCTCA 60.046 40.000 0.00 0.00 0.00 3.27
3140 3186 5.065731 CCTTGCAATTTATGTCTCCTCTCAC 59.934 44.000 0.00 0.00 0.00 3.51
3141 3187 5.426689 TGCAATTTATGTCTCCTCTCACT 57.573 39.130 0.00 0.00 0.00 3.41
3142 3188 6.544928 TGCAATTTATGTCTCCTCTCACTA 57.455 37.500 0.00 0.00 0.00 2.74
3143 3189 7.129457 TGCAATTTATGTCTCCTCTCACTAT 57.871 36.000 0.00 0.00 0.00 2.12
3144 3190 8.250143 TGCAATTTATGTCTCCTCTCACTATA 57.750 34.615 0.00 0.00 0.00 1.31
3145 3191 8.874156 TGCAATTTATGTCTCCTCTCACTATAT 58.126 33.333 0.00 0.00 0.00 0.86
3146 3192 9.364989 GCAATTTATGTCTCCTCTCACTATATC 57.635 37.037 0.00 0.00 0.00 1.63
3153 3199 8.493787 TGTCTCCTCTCACTATATCTACTACA 57.506 38.462 0.00 0.00 0.00 2.74
3154 3200 8.590204 TGTCTCCTCTCACTATATCTACTACAG 58.410 40.741 0.00 0.00 0.00 2.74
3155 3201 8.591072 GTCTCCTCTCACTATATCTACTACAGT 58.409 40.741 0.00 0.00 0.00 3.55
3156 3202 9.161572 TCTCCTCTCACTATATCTACTACAGTT 57.838 37.037 0.00 0.00 0.00 3.16
3163 3209 9.993454 TCACTATATCTACTACAGTTATGTCGT 57.007 33.333 0.00 0.00 41.01 4.34
3167 3213 6.621316 ATCTACTACAGTTATGTCGTCTGG 57.379 41.667 0.00 0.00 41.01 3.86
3168 3214 5.494724 TCTACTACAGTTATGTCGTCTGGT 58.505 41.667 0.00 0.00 41.01 4.00
3169 3215 5.942236 TCTACTACAGTTATGTCGTCTGGTT 59.058 40.000 0.00 0.00 41.01 3.67
3170 3216 5.464030 ACTACAGTTATGTCGTCTGGTTT 57.536 39.130 0.00 0.00 41.01 3.27
3171 3217 5.850614 ACTACAGTTATGTCGTCTGGTTTT 58.149 37.500 0.00 0.00 41.01 2.43
3172 3218 5.694910 ACTACAGTTATGTCGTCTGGTTTTG 59.305 40.000 0.00 0.00 41.01 2.44
3173 3219 4.699637 ACAGTTATGTCGTCTGGTTTTGA 58.300 39.130 0.00 0.00 32.99 2.69
3174 3220 5.120399 ACAGTTATGTCGTCTGGTTTTGAA 58.880 37.500 0.00 0.00 32.99 2.69
3175 3221 5.763204 ACAGTTATGTCGTCTGGTTTTGAAT 59.237 36.000 0.00 0.00 32.99 2.57
3176 3222 6.932400 ACAGTTATGTCGTCTGGTTTTGAATA 59.068 34.615 0.00 0.00 32.99 1.75
3177 3223 7.117812 ACAGTTATGTCGTCTGGTTTTGAATAG 59.882 37.037 0.00 0.00 32.99 1.73
3178 3224 4.946784 ATGTCGTCTGGTTTTGAATAGC 57.053 40.909 0.00 0.00 0.00 2.97
3179 3225 3.734463 TGTCGTCTGGTTTTGAATAGCA 58.266 40.909 0.00 0.00 0.00 3.49
3180 3226 4.130857 TGTCGTCTGGTTTTGAATAGCAA 58.869 39.130 0.00 0.00 33.88 3.91
3181 3227 4.213270 TGTCGTCTGGTTTTGAATAGCAAG 59.787 41.667 0.00 0.00 37.87 4.01
3182 3228 3.188460 TCGTCTGGTTTTGAATAGCAAGC 59.812 43.478 0.00 0.00 37.87 4.01
3183 3229 3.058293 CGTCTGGTTTTGAATAGCAAGCA 60.058 43.478 0.00 0.00 37.87 3.91
3184 3230 4.556501 CGTCTGGTTTTGAATAGCAAGCAA 60.557 41.667 0.00 0.00 37.87 3.91
3185 3231 5.473039 GTCTGGTTTTGAATAGCAAGCAAT 58.527 37.500 0.00 0.00 37.87 3.56
3186 3232 6.620678 GTCTGGTTTTGAATAGCAAGCAATA 58.379 36.000 0.00 0.00 37.87 1.90
3187 3233 6.749118 GTCTGGTTTTGAATAGCAAGCAATAG 59.251 38.462 0.00 0.00 37.87 1.73
3188 3234 5.964758 TGGTTTTGAATAGCAAGCAATAGG 58.035 37.500 0.00 0.00 37.87 2.57
3189 3235 5.105392 TGGTTTTGAATAGCAAGCAATAGGG 60.105 40.000 0.00 0.00 37.87 3.53
3190 3236 5.127031 GGTTTTGAATAGCAAGCAATAGGGA 59.873 40.000 0.00 0.00 37.87 4.20
3191 3237 5.835113 TTTGAATAGCAAGCAATAGGGAC 57.165 39.130 0.00 0.00 37.87 4.46
3192 3238 4.778213 TGAATAGCAAGCAATAGGGACT 57.222 40.909 0.00 0.00 46.37 3.85
3193 3239 4.454678 TGAATAGCAAGCAATAGGGACTG 58.545 43.478 0.00 0.00 41.52 3.51
3194 3240 4.080356 TGAATAGCAAGCAATAGGGACTGT 60.080 41.667 0.00 0.00 41.52 3.55
3195 3241 2.119801 AGCAAGCAATAGGGACTGTG 57.880 50.000 0.00 0.00 41.52 3.66
3196 3242 1.352352 AGCAAGCAATAGGGACTGTGT 59.648 47.619 0.00 0.00 41.52 3.72
3197 3243 2.571653 AGCAAGCAATAGGGACTGTGTA 59.428 45.455 0.00 0.00 41.52 2.90
3198 3244 3.200825 AGCAAGCAATAGGGACTGTGTAT 59.799 43.478 0.00 0.00 41.52 2.29
3199 3245 4.408921 AGCAAGCAATAGGGACTGTGTATA 59.591 41.667 0.00 0.00 41.52 1.47
3200 3246 4.511826 GCAAGCAATAGGGACTGTGTATAC 59.488 45.833 0.00 0.00 41.52 1.47
3201 3247 4.585955 AGCAATAGGGACTGTGTATACG 57.414 45.455 0.00 0.00 41.52 3.06
3202 3248 3.958798 AGCAATAGGGACTGTGTATACGT 59.041 43.478 0.00 0.00 41.52 3.57
3203 3249 5.135383 AGCAATAGGGACTGTGTATACGTA 58.865 41.667 0.00 0.00 41.52 3.57
3204 3250 5.009410 AGCAATAGGGACTGTGTATACGTAC 59.991 44.000 0.00 0.00 41.52 3.67
3205 3251 5.221106 GCAATAGGGACTGTGTATACGTACA 60.221 44.000 0.00 0.00 41.52 2.90
3214 3260 3.557577 TGTATACGTACACAACACGCT 57.442 42.857 3.75 0.00 43.10 5.07
3215 3261 3.899734 TGTATACGTACACAACACGCTT 58.100 40.909 3.75 0.00 43.10 4.68
3216 3262 3.913763 TGTATACGTACACAACACGCTTC 59.086 43.478 3.75 0.00 43.10 3.86
3217 3263 2.488639 TACGTACACAACACGCTTCA 57.511 45.000 0.00 0.00 43.10 3.02
3218 3264 1.642728 ACGTACACAACACGCTTCAA 58.357 45.000 0.00 0.00 43.10 2.69
3219 3265 2.206750 ACGTACACAACACGCTTCAAT 58.793 42.857 0.00 0.00 43.10 2.57
3220 3266 2.033236 ACGTACACAACACGCTTCAATG 60.033 45.455 0.00 0.00 43.10 2.82
3221 3267 2.219903 CGTACACAACACGCTTCAATGA 59.780 45.455 0.00 0.00 31.94 2.57
3222 3268 3.302805 CGTACACAACACGCTTCAATGAA 60.303 43.478 0.00 0.00 31.94 2.57
3223 3269 3.338818 ACACAACACGCTTCAATGAAG 57.661 42.857 18.02 18.02 42.03 3.02
3233 3279 3.713858 CTTCAATGAAGCCACACACAA 57.286 42.857 10.30 0.00 32.78 3.33
3234 3280 3.374745 CTTCAATGAAGCCACACACAAC 58.625 45.455 10.30 0.00 32.78 3.32
3235 3281 1.680735 TCAATGAAGCCACACACAACC 59.319 47.619 0.00 0.00 0.00 3.77
3236 3282 1.039856 AATGAAGCCACACACAACCC 58.960 50.000 0.00 0.00 0.00 4.11
3237 3283 0.185901 ATGAAGCCACACACAACCCT 59.814 50.000 0.00 0.00 0.00 4.34
3238 3284 0.840617 TGAAGCCACACACAACCCTA 59.159 50.000 0.00 0.00 0.00 3.53
3239 3285 1.213182 TGAAGCCACACACAACCCTAA 59.787 47.619 0.00 0.00 0.00 2.69
3240 3286 2.303175 GAAGCCACACACAACCCTAAA 58.697 47.619 0.00 0.00 0.00 1.85
3241 3287 2.445682 AGCCACACACAACCCTAAAA 57.554 45.000 0.00 0.00 0.00 1.52
3242 3288 2.741145 AGCCACACACAACCCTAAAAA 58.259 42.857 0.00 0.00 0.00 1.94
3261 3307 2.435372 AAAAAGAGGCCACACACAGA 57.565 45.000 5.01 0.00 0.00 3.41
3262 3308 1.680338 AAAAGAGGCCACACACAGAC 58.320 50.000 5.01 0.00 0.00 3.51
3263 3309 0.839946 AAAGAGGCCACACACAGACT 59.160 50.000 5.01 0.00 0.00 3.24
3264 3310 0.394565 AAGAGGCCACACACAGACTC 59.605 55.000 5.01 0.00 0.00 3.36
3265 3311 1.004440 GAGGCCACACACAGACTCC 60.004 63.158 5.01 0.00 0.00 3.85
3266 3312 1.460305 AGGCCACACACAGACTCCT 60.460 57.895 5.01 0.00 0.00 3.69
3267 3313 1.302033 GGCCACACACAGACTCCTG 60.302 63.158 0.00 0.00 45.76 3.86
3268 3314 1.748403 GCCACACACAGACTCCTGA 59.252 57.895 0.00 0.00 43.02 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 72 0.404040 TGAGCCAAAATCCTCCCGTT 59.596 50.000 0.00 0.00 0.00 4.44
137 140 0.918983 AGGAAGAATGATGGCGGGAA 59.081 50.000 0.00 0.00 0.00 3.97
146 149 0.606096 TGCGAACGGAGGAAGAATGA 59.394 50.000 0.00 0.00 0.00 2.57
194 197 2.047274 GCACCGCTTACCTGCTCA 60.047 61.111 0.00 0.00 0.00 4.26
367 377 5.132648 ACCATGCATCTAGATCAAACCCTAA 59.867 40.000 1.03 0.00 0.00 2.69
417 427 3.551454 GCAGCATAGCAACCAACCATATG 60.551 47.826 0.00 0.00 0.00 1.78
498 508 3.699067 CACAAGGCTCAACTTCAAACTG 58.301 45.455 0.00 0.00 0.00 3.16
512 522 2.223782 TGATTCAACACAAGCACAAGGC 60.224 45.455 0.00 0.00 45.30 4.35
566 576 6.003950 ACTAACAACATGCTACAAATGGACT 58.996 36.000 0.00 0.00 0.00 3.85
588 598 6.537453 AAGCAGAGACATACATCTACAACT 57.463 37.500 0.00 0.00 0.00 3.16
604 614 6.589523 GCATACCAGACAATCTATAAGCAGAG 59.410 42.308 0.00 0.00 0.00 3.35
709 720 3.491964 GCATAGCACACTACATACCGGAA 60.492 47.826 9.46 0.00 0.00 4.30
799 810 3.303189 CTGGCTGTCGGACAGGAT 58.697 61.111 32.63 0.00 46.95 3.24
835 846 0.313672 GAGATAGGCTGCGAGTCCTG 59.686 60.000 0.00 0.00 34.02 3.86
852 863 0.467384 AATCAGGTGCCATCTCGGAG 59.533 55.000 0.00 0.00 36.56 4.63
1032 1061 3.181462 TGAGCTCACACATCTTGTTCAGT 60.181 43.478 13.74 0.00 35.67 3.41
1077 1106 0.328258 GCACCTCCTTGAAGCCCTTA 59.672 55.000 0.00 0.00 0.00 2.69
1234 1264 1.680249 GGAGCAAGTGTTCTCATCCCC 60.680 57.143 0.00 0.00 0.00 4.81
1326 1356 0.991355 TAGGGGTAGGCAATGGTGGG 60.991 60.000 0.00 0.00 0.00 4.61
1341 1371 4.000988 AGTGTTGTTAGTTGCGATTAGGG 58.999 43.478 0.00 0.00 0.00 3.53
1486 1517 0.768221 AGAACCAAGAGGCTCACCCA 60.768 55.000 18.26 0.00 39.06 4.51
1612 1643 0.325110 CAGGCCTCCTCTCTTCCTCA 60.325 60.000 0.00 0.00 0.00 3.86
1841 1872 3.233980 AGCACCCTGTGAGCGTCA 61.234 61.111 0.00 0.00 35.23 4.35
1960 2002 3.671928 GCTACACAAAATGTACGTCGTCT 59.328 43.478 0.00 0.00 43.19 4.18
2062 2106 2.270986 GGTGTCGTCCTACCACCGT 61.271 63.158 0.00 0.00 39.29 4.83
2268 2313 0.179100 CCTCATCGATGAACACGGCT 60.179 55.000 27.09 0.00 36.18 5.52
2282 2327 4.380791 ACTATAAACCCCTGGAACCTCAT 58.619 43.478 0.00 0.00 0.00 2.90
2332 2377 3.861840 AGTTGCAGTTGCTATACGATGT 58.138 40.909 5.62 0.00 42.66 3.06
2416 2461 4.385405 GCCGACACTGCTGCCTCT 62.385 66.667 0.00 0.00 0.00 3.69
2582 2627 2.636403 ACCTTGTACCCTAGTTGGTGAC 59.364 50.000 1.21 0.00 39.53 3.67
2660 2705 3.133721 ACTTTGTTTGGTTGGCTGCATTA 59.866 39.130 0.50 0.00 0.00 1.90
2715 2761 1.485895 AGTTGTTTGGTTGCCTGCATT 59.514 42.857 0.00 0.00 0.00 3.56
2838 2884 7.223971 TCGCTAGTATTTTCTTCGTATGCATTT 59.776 33.333 3.54 0.00 0.00 2.32
2839 2885 6.700081 TCGCTAGTATTTTCTTCGTATGCATT 59.300 34.615 3.54 0.00 0.00 3.56
2840 2886 6.144080 GTCGCTAGTATTTTCTTCGTATGCAT 59.856 38.462 3.79 3.79 0.00 3.96
2841 2887 5.457799 GTCGCTAGTATTTTCTTCGTATGCA 59.542 40.000 0.00 0.00 0.00 3.96
2842 2888 5.457799 TGTCGCTAGTATTTTCTTCGTATGC 59.542 40.000 0.00 0.00 0.00 3.14
2843 2889 7.445900 TTGTCGCTAGTATTTTCTTCGTATG 57.554 36.000 0.00 0.00 0.00 2.39
2844 2890 9.178427 GTATTGTCGCTAGTATTTTCTTCGTAT 57.822 33.333 0.00 0.00 0.00 3.06
2845 2891 8.183536 TGTATTGTCGCTAGTATTTTCTTCGTA 58.816 33.333 0.00 0.00 0.00 3.43
2846 2892 7.031372 TGTATTGTCGCTAGTATTTTCTTCGT 58.969 34.615 0.00 0.00 0.00 3.85
2847 2893 7.445900 TGTATTGTCGCTAGTATTTTCTTCG 57.554 36.000 0.00 0.00 0.00 3.79
2857 2903 8.013947 CGTATGTAACTATGTATTGTCGCTAGT 58.986 37.037 0.00 0.00 0.00 2.57
2858 2904 7.480855 CCGTATGTAACTATGTATTGTCGCTAG 59.519 40.741 0.00 0.00 0.00 3.42
2859 2905 7.041167 ACCGTATGTAACTATGTATTGTCGCTA 60.041 37.037 0.00 0.00 0.00 4.26
2860 2906 6.147581 CCGTATGTAACTATGTATTGTCGCT 58.852 40.000 0.00 0.00 0.00 4.93
2861 2907 5.916883 ACCGTATGTAACTATGTATTGTCGC 59.083 40.000 0.00 0.00 0.00 5.19
2862 2908 6.129273 GCACCGTATGTAACTATGTATTGTCG 60.129 42.308 0.00 0.00 0.00 4.35
2863 2909 6.145048 GGCACCGTATGTAACTATGTATTGTC 59.855 42.308 0.00 0.00 0.00 3.18
2864 2910 5.987347 GGCACCGTATGTAACTATGTATTGT 59.013 40.000 0.00 0.00 0.00 2.71
2865 2911 5.407387 GGGCACCGTATGTAACTATGTATTG 59.593 44.000 0.00 0.00 40.86 1.90
2866 2912 5.544650 GGGCACCGTATGTAACTATGTATT 58.455 41.667 0.00 0.00 40.86 1.89
2867 2913 5.143376 GGGCACCGTATGTAACTATGTAT 57.857 43.478 0.00 0.00 40.86 2.29
2868 2914 4.589216 GGGCACCGTATGTAACTATGTA 57.411 45.455 0.00 0.00 40.86 2.29
2869 2915 3.464111 GGGCACCGTATGTAACTATGT 57.536 47.619 0.00 0.00 40.86 2.29
2887 2933 3.443045 GTGGTGCATCGCAAGGGG 61.443 66.667 5.43 0.00 41.47 4.79
2888 2934 3.803082 CGTGGTGCATCGCAAGGG 61.803 66.667 11.75 0.00 41.47 3.95
2889 2935 2.741985 TCGTGGTGCATCGCAAGG 60.742 61.111 11.75 0.00 41.47 3.61
2890 2936 1.568612 AAGTCGTGGTGCATCGCAAG 61.569 55.000 11.75 0.00 41.47 4.01
2891 2937 1.163420 AAAGTCGTGGTGCATCGCAA 61.163 50.000 11.75 0.00 41.47 4.85
2892 2938 0.319986 TAAAGTCGTGGTGCATCGCA 60.320 50.000 11.75 0.00 35.60 5.10
2893 2939 1.006832 ATAAAGTCGTGGTGCATCGC 58.993 50.000 0.00 0.00 0.00 4.58
2894 2940 2.029244 GTCATAAAGTCGTGGTGCATCG 59.971 50.000 0.00 0.00 0.00 3.84
2895 2941 3.000041 TGTCATAAAGTCGTGGTGCATC 59.000 45.455 0.00 0.00 0.00 3.91
2896 2942 3.052455 TGTCATAAAGTCGTGGTGCAT 57.948 42.857 0.00 0.00 0.00 3.96
2897 2943 2.535012 TGTCATAAAGTCGTGGTGCA 57.465 45.000 0.00 0.00 0.00 4.57
2898 2944 2.095853 CCATGTCATAAAGTCGTGGTGC 59.904 50.000 0.00 0.00 37.57 5.01
2899 2945 3.370978 GTCCATGTCATAAAGTCGTGGTG 59.629 47.826 0.00 0.00 41.45 4.17
2900 2946 3.007506 TGTCCATGTCATAAAGTCGTGGT 59.992 43.478 0.00 0.00 41.45 4.16
2901 2947 3.595173 TGTCCATGTCATAAAGTCGTGG 58.405 45.455 0.00 0.00 41.89 4.94
2902 2948 4.869861 TGATGTCCATGTCATAAAGTCGTG 59.130 41.667 0.00 0.00 0.00 4.35
2903 2949 5.084818 TGATGTCCATGTCATAAAGTCGT 57.915 39.130 0.00 0.00 0.00 4.34
2904 2950 6.258507 TGAATGATGTCCATGTCATAAAGTCG 59.741 38.462 0.00 0.00 34.14 4.18
2905 2951 7.558161 TGAATGATGTCCATGTCATAAAGTC 57.442 36.000 0.00 2.15 34.14 3.01
2906 2952 7.613022 AGTTGAATGATGTCCATGTCATAAAGT 59.387 33.333 0.00 0.00 34.14 2.66
2907 2953 7.913821 CAGTTGAATGATGTCCATGTCATAAAG 59.086 37.037 0.00 0.00 34.14 1.85
2908 2954 7.629008 GCAGTTGAATGATGTCCATGTCATAAA 60.629 37.037 0.00 0.00 34.14 1.40
2909 2955 6.183360 GCAGTTGAATGATGTCCATGTCATAA 60.183 38.462 0.00 0.00 34.14 1.90
2910 2956 5.297527 GCAGTTGAATGATGTCCATGTCATA 59.702 40.000 0.00 0.00 34.14 2.15
2911 2957 4.097437 GCAGTTGAATGATGTCCATGTCAT 59.903 41.667 0.00 0.00 36.67 3.06
2912 2958 3.441222 GCAGTTGAATGATGTCCATGTCA 59.559 43.478 0.00 0.00 35.24 3.58
2913 2959 3.441222 TGCAGTTGAATGATGTCCATGTC 59.559 43.478 0.00 0.00 35.24 3.06
2914 2960 3.423749 TGCAGTTGAATGATGTCCATGT 58.576 40.909 0.00 0.00 35.24 3.21
2915 2961 4.649088 ATGCAGTTGAATGATGTCCATG 57.351 40.909 0.00 0.00 35.24 3.66
2916 2962 6.971726 ATTATGCAGTTGAATGATGTCCAT 57.028 33.333 0.00 0.00 36.99 3.41
2917 2963 6.604396 AGAATTATGCAGTTGAATGATGTCCA 59.396 34.615 0.00 0.00 0.00 4.02
2918 2964 6.916387 CAGAATTATGCAGTTGAATGATGTCC 59.084 38.462 0.00 0.00 0.00 4.02
2919 2965 6.417044 GCAGAATTATGCAGTTGAATGATGTC 59.583 38.462 19.79 0.00 45.77 3.06
2920 2966 6.270815 GCAGAATTATGCAGTTGAATGATGT 58.729 36.000 19.79 0.00 45.77 3.06
2921 2967 6.749216 GCAGAATTATGCAGTTGAATGATG 57.251 37.500 19.79 0.00 45.77 3.07
2933 2979 2.035066 GGTGGTCCATGCAGAATTATGC 59.965 50.000 18.03 18.03 46.68 3.14
2934 2980 2.291465 CGGTGGTCCATGCAGAATTATG 59.709 50.000 0.00 0.00 0.00 1.90
2935 2981 2.092429 ACGGTGGTCCATGCAGAATTAT 60.092 45.455 0.00 0.00 0.00 1.28
2936 2982 1.280710 ACGGTGGTCCATGCAGAATTA 59.719 47.619 0.00 0.00 0.00 1.40
2937 2983 0.038166 ACGGTGGTCCATGCAGAATT 59.962 50.000 0.00 0.00 0.00 2.17
2938 2984 0.392998 GACGGTGGTCCATGCAGAAT 60.393 55.000 0.00 0.00 37.19 2.40
2939 2985 1.003839 GACGGTGGTCCATGCAGAA 60.004 57.895 0.00 0.00 37.19 3.02
2940 2986 2.662596 GACGGTGGTCCATGCAGA 59.337 61.111 0.00 0.00 37.19 4.26
2941 2987 2.815211 CGACGGTGGTCCATGCAG 60.815 66.667 0.00 0.00 40.17 4.41
2942 2988 4.386951 CCGACGGTGGTCCATGCA 62.387 66.667 5.48 0.00 40.17 3.96
2960 3006 0.679640 TTATTCCGCAACAGGCCAGG 60.680 55.000 5.01 0.00 40.31 4.45
2961 3007 1.135402 GTTTATTCCGCAACAGGCCAG 60.135 52.381 5.01 0.00 40.31 4.85
2962 3008 0.885196 GTTTATTCCGCAACAGGCCA 59.115 50.000 5.01 0.00 40.31 5.36
2963 3009 0.179174 CGTTTATTCCGCAACAGGCC 60.179 55.000 0.00 0.00 40.31 5.19
2964 3010 3.306206 CGTTTATTCCGCAACAGGC 57.694 52.632 0.00 0.00 39.90 4.85
2972 3018 1.329599 GCTACAAGGGCGTTTATTCCG 59.670 52.381 0.00 0.00 0.00 4.30
2973 3019 2.640184 AGCTACAAGGGCGTTTATTCC 58.360 47.619 0.00 0.00 34.52 3.01
2974 3020 3.439129 ACAAGCTACAAGGGCGTTTATTC 59.561 43.478 0.00 0.00 34.52 1.75
2975 3021 3.190535 CACAAGCTACAAGGGCGTTTATT 59.809 43.478 0.00 0.00 34.52 1.40
2976 3022 2.747446 CACAAGCTACAAGGGCGTTTAT 59.253 45.455 0.00 0.00 34.52 1.40
2977 3023 2.147958 CACAAGCTACAAGGGCGTTTA 58.852 47.619 0.00 0.00 34.52 2.01
2978 3024 0.951558 CACAAGCTACAAGGGCGTTT 59.048 50.000 0.00 0.00 34.52 3.60
2979 3025 0.889186 CCACAAGCTACAAGGGCGTT 60.889 55.000 0.00 0.00 34.52 4.84
2980 3026 1.302511 CCACAAGCTACAAGGGCGT 60.303 57.895 0.00 0.00 34.52 5.68
2981 3027 2.690778 GCCACAAGCTACAAGGGCG 61.691 63.158 0.00 0.00 38.99 6.13
2982 3028 0.967380 ATGCCACAAGCTACAAGGGC 60.967 55.000 7.60 7.60 44.23 5.19
2983 3029 1.549203 AATGCCACAAGCTACAAGGG 58.451 50.000 0.00 0.00 44.23 3.95
2984 3030 4.398988 TGATAAATGCCACAAGCTACAAGG 59.601 41.667 0.00 0.00 44.23 3.61
2985 3031 5.565592 TGATAAATGCCACAAGCTACAAG 57.434 39.130 0.00 0.00 44.23 3.16
2986 3032 5.709631 TCTTGATAAATGCCACAAGCTACAA 59.290 36.000 0.00 0.00 44.23 2.41
2987 3033 5.252547 TCTTGATAAATGCCACAAGCTACA 58.747 37.500 0.00 0.00 44.23 2.74
2988 3034 5.818136 TCTTGATAAATGCCACAAGCTAC 57.182 39.130 0.00 0.00 44.23 3.58
2989 3035 5.709631 TGTTCTTGATAAATGCCACAAGCTA 59.290 36.000 0.00 0.00 44.23 3.32
2990 3036 4.523943 TGTTCTTGATAAATGCCACAAGCT 59.476 37.500 0.00 0.00 44.23 3.74
2991 3037 4.808558 TGTTCTTGATAAATGCCACAAGC 58.191 39.130 0.00 0.00 39.33 4.01
2992 3038 7.712264 TTTTGTTCTTGATAAATGCCACAAG 57.288 32.000 0.00 0.00 40.37 3.16
2993 3039 8.674263 AATTTTGTTCTTGATAAATGCCACAA 57.326 26.923 0.00 0.00 0.00 3.33
2994 3040 8.557864 CAAATTTTGTTCTTGATAAATGCCACA 58.442 29.630 0.78 0.00 0.00 4.17
2995 3041 8.016801 CCAAATTTTGTTCTTGATAAATGCCAC 58.983 33.333 8.26 0.00 0.00 5.01
2996 3042 7.174599 CCCAAATTTTGTTCTTGATAAATGCCA 59.825 33.333 8.26 0.00 0.00 4.92
2997 3043 7.390162 TCCCAAATTTTGTTCTTGATAAATGCC 59.610 33.333 8.26 0.00 0.00 4.40
2998 3044 8.321650 TCCCAAATTTTGTTCTTGATAAATGC 57.678 30.769 8.26 0.00 0.00 3.56
3001 3047 9.844257 ACATTCCCAAATTTTGTTCTTGATAAA 57.156 25.926 8.26 0.00 0.00 1.40
3002 3048 9.270640 CACATTCCCAAATTTTGTTCTTGATAA 57.729 29.630 8.26 0.00 0.00 1.75
3003 3049 8.428063 ACACATTCCCAAATTTTGTTCTTGATA 58.572 29.630 8.26 0.00 0.00 2.15
3004 3050 7.281841 ACACATTCCCAAATTTTGTTCTTGAT 58.718 30.769 8.26 0.00 0.00 2.57
3005 3051 6.648192 ACACATTCCCAAATTTTGTTCTTGA 58.352 32.000 8.26 0.00 0.00 3.02
3006 3052 6.923928 ACACATTCCCAAATTTTGTTCTTG 57.076 33.333 8.26 3.84 0.00 3.02
3007 3053 9.625747 ATTTACACATTCCCAAATTTTGTTCTT 57.374 25.926 8.26 0.00 0.00 2.52
3008 3054 9.054922 CATTTACACATTCCCAAATTTTGTTCT 57.945 29.630 8.26 0.00 0.00 3.01
3009 3055 9.050601 TCATTTACACATTCCCAAATTTTGTTC 57.949 29.630 8.26 0.00 0.00 3.18
3010 3056 8.970859 TCATTTACACATTCCCAAATTTTGTT 57.029 26.923 8.26 0.00 0.00 2.83
3011 3057 8.970859 TTCATTTACACATTCCCAAATTTTGT 57.029 26.923 8.26 0.00 0.00 2.83
3012 3058 9.881529 CTTTCATTTACACATTCCCAAATTTTG 57.118 29.630 1.99 1.99 0.00 2.44
3013 3059 8.567104 GCTTTCATTTACACATTCCCAAATTTT 58.433 29.630 0.00 0.00 0.00 1.82
3014 3060 7.718753 TGCTTTCATTTACACATTCCCAAATTT 59.281 29.630 0.00 0.00 0.00 1.82
3015 3061 7.222872 TGCTTTCATTTACACATTCCCAAATT 58.777 30.769 0.00 0.00 0.00 1.82
3016 3062 6.767456 TGCTTTCATTTACACATTCCCAAAT 58.233 32.000 0.00 0.00 0.00 2.32
3017 3063 6.166984 TGCTTTCATTTACACATTCCCAAA 57.833 33.333 0.00 0.00 0.00 3.28
3018 3064 5.798125 TGCTTTCATTTACACATTCCCAA 57.202 34.783 0.00 0.00 0.00 4.12
3019 3065 5.999205 ATGCTTTCATTTACACATTCCCA 57.001 34.783 0.00 0.00 0.00 4.37
3020 3066 6.974622 CACTATGCTTTCATTTACACATTCCC 59.025 38.462 0.00 0.00 34.22 3.97
3021 3067 6.974622 CCACTATGCTTTCATTTACACATTCC 59.025 38.462 0.00 0.00 34.22 3.01
3022 3068 6.473455 GCCACTATGCTTTCATTTACACATTC 59.527 38.462 0.00 0.00 34.22 2.67
3023 3069 6.332630 GCCACTATGCTTTCATTTACACATT 58.667 36.000 0.00 0.00 34.22 2.71
3024 3070 5.449041 CGCCACTATGCTTTCATTTACACAT 60.449 40.000 0.00 0.00 34.22 3.21
3025 3071 4.142708 CGCCACTATGCTTTCATTTACACA 60.143 41.667 0.00 0.00 34.22 3.72
3026 3072 4.094294 TCGCCACTATGCTTTCATTTACAC 59.906 41.667 0.00 0.00 34.22 2.90
3027 3073 4.094294 GTCGCCACTATGCTTTCATTTACA 59.906 41.667 0.00 0.00 34.22 2.41
3028 3074 4.332819 AGTCGCCACTATGCTTTCATTTAC 59.667 41.667 0.00 0.00 34.22 2.01
3029 3075 4.513442 AGTCGCCACTATGCTTTCATTTA 58.487 39.130 0.00 0.00 34.22 1.40
3030 3076 3.347216 AGTCGCCACTATGCTTTCATTT 58.653 40.909 0.00 0.00 34.22 2.32
3031 3077 2.939103 GAGTCGCCACTATGCTTTCATT 59.061 45.455 0.00 0.00 34.22 2.57
3032 3078 2.093500 TGAGTCGCCACTATGCTTTCAT 60.093 45.455 0.00 0.00 36.73 2.57
3033 3079 1.275010 TGAGTCGCCACTATGCTTTCA 59.725 47.619 0.00 0.00 30.63 2.69
3034 3080 1.661112 GTGAGTCGCCACTATGCTTTC 59.339 52.381 0.00 0.00 34.38 2.62
3035 3081 1.276421 AGTGAGTCGCCACTATGCTTT 59.724 47.619 0.00 0.00 44.82 3.51
3036 3082 0.898320 AGTGAGTCGCCACTATGCTT 59.102 50.000 0.00 0.00 44.82 3.91
3037 3083 0.457851 GAGTGAGTCGCCACTATGCT 59.542 55.000 0.00 0.00 46.45 3.79
3038 3084 0.457851 AGAGTGAGTCGCCACTATGC 59.542 55.000 0.00 0.00 46.45 3.14
3039 3085 2.534298 CAAGAGTGAGTCGCCACTATG 58.466 52.381 0.00 0.00 46.45 2.23
3040 3086 1.478510 CCAAGAGTGAGTCGCCACTAT 59.521 52.381 0.00 0.00 46.45 2.12
3041 3087 0.888619 CCAAGAGTGAGTCGCCACTA 59.111 55.000 0.00 0.00 46.45 2.74
3043 3089 1.367840 ACCAAGAGTGAGTCGCCAC 59.632 57.895 0.00 0.00 37.32 5.01
3044 3090 3.870955 ACCAAGAGTGAGTCGCCA 58.129 55.556 0.00 0.00 0.00 5.69
3053 3099 1.421646 CAGAAGGGGAACACCAAGAGT 59.578 52.381 0.00 0.00 42.91 3.24
3054 3100 1.884067 GCAGAAGGGGAACACCAAGAG 60.884 57.143 0.00 0.00 42.91 2.85
3055 3101 0.110486 GCAGAAGGGGAACACCAAGA 59.890 55.000 0.00 0.00 42.91 3.02
3056 3102 0.178992 TGCAGAAGGGGAACACCAAG 60.179 55.000 0.00 0.00 42.91 3.61
3057 3103 0.260230 TTGCAGAAGGGGAACACCAA 59.740 50.000 0.00 0.00 42.91 3.67
3058 3104 0.178992 CTTGCAGAAGGGGAACACCA 60.179 55.000 0.00 0.00 42.91 4.17
3059 3105 0.178990 ACTTGCAGAAGGGGAACACC 60.179 55.000 0.00 0.00 39.11 4.16
3060 3106 2.427506 CTACTTGCAGAAGGGGAACAC 58.572 52.381 0.00 0.00 32.95 3.32
3061 3107 1.351017 CCTACTTGCAGAAGGGGAACA 59.649 52.381 3.71 0.00 32.95 3.18
3062 3108 1.950954 GCCTACTTGCAGAAGGGGAAC 60.951 57.143 11.67 0.00 32.95 3.62
3063 3109 0.328258 GCCTACTTGCAGAAGGGGAA 59.672 55.000 11.67 0.00 32.95 3.97
3064 3110 1.899437 CGCCTACTTGCAGAAGGGGA 61.899 60.000 17.87 0.00 43.98 4.81
3065 3111 1.450312 CGCCTACTTGCAGAAGGGG 60.450 63.158 11.85 11.85 37.05 4.79
3066 3112 0.741221 GACGCCTACTTGCAGAAGGG 60.741 60.000 11.67 3.94 32.95 3.95
3067 3113 0.741221 GGACGCCTACTTGCAGAAGG 60.741 60.000 6.69 6.69 32.95 3.46
3068 3114 0.741221 GGGACGCCTACTTGCAGAAG 60.741 60.000 0.00 0.00 35.07 2.85
3069 3115 1.295423 GGGACGCCTACTTGCAGAA 59.705 57.895 0.00 0.00 0.00 3.02
3070 3116 2.656069 GGGGACGCCTACTTGCAGA 61.656 63.158 0.24 0.00 0.00 4.26
3071 3117 2.125106 GGGGACGCCTACTTGCAG 60.125 66.667 0.24 0.00 0.00 4.41
3085 3131 4.803426 GAGACGCAGCAGACGGGG 62.803 72.222 0.00 0.00 34.00 5.73
3086 3132 4.803426 GGAGACGCAGCAGACGGG 62.803 72.222 0.00 0.00 34.00 5.28
3087 3133 3.691744 GAGGAGACGCAGCAGACGG 62.692 68.421 0.00 0.00 34.00 4.79
3088 3134 2.202544 GAGGAGACGCAGCAGACG 60.203 66.667 0.00 0.00 0.00 4.18
3089 3135 1.138671 GAGAGGAGACGCAGCAGAC 59.861 63.158 0.00 0.00 0.00 3.51
3090 3136 1.001517 AGAGAGGAGACGCAGCAGA 60.002 57.895 0.00 0.00 0.00 4.26
3091 3137 1.031571 AGAGAGAGGAGACGCAGCAG 61.032 60.000 0.00 0.00 0.00 4.24
3092 3138 0.610509 AAGAGAGAGGAGACGCAGCA 60.611 55.000 0.00 0.00 0.00 4.41
3093 3139 0.100503 GAAGAGAGAGGAGACGCAGC 59.899 60.000 0.00 0.00 0.00 5.25
3094 3140 1.750193 AGAAGAGAGAGGAGACGCAG 58.250 55.000 0.00 0.00 0.00 5.18
3095 3141 3.472652 GATAGAAGAGAGAGGAGACGCA 58.527 50.000 0.00 0.00 0.00 5.24
3096 3142 2.812011 GGATAGAAGAGAGAGGAGACGC 59.188 54.545 0.00 0.00 0.00 5.19
3097 3143 4.351874 AGGATAGAAGAGAGAGGAGACG 57.648 50.000 0.00 0.00 0.00 4.18
3098 3144 4.278419 GCAAGGATAGAAGAGAGAGGAGAC 59.722 50.000 0.00 0.00 0.00 3.36
3099 3145 4.079500 TGCAAGGATAGAAGAGAGAGGAGA 60.080 45.833 0.00 0.00 0.00 3.71
3100 3146 4.214310 TGCAAGGATAGAAGAGAGAGGAG 58.786 47.826 0.00 0.00 0.00 3.69
3101 3147 4.256983 TGCAAGGATAGAAGAGAGAGGA 57.743 45.455 0.00 0.00 0.00 3.71
3102 3148 5.549742 ATTGCAAGGATAGAAGAGAGAGG 57.450 43.478 4.94 0.00 0.00 3.69
3103 3149 8.991026 CATAAATTGCAAGGATAGAAGAGAGAG 58.009 37.037 4.94 0.00 0.00 3.20
3104 3150 8.489489 ACATAAATTGCAAGGATAGAAGAGAGA 58.511 33.333 4.94 0.00 0.00 3.10
3105 3151 8.674263 ACATAAATTGCAAGGATAGAAGAGAG 57.326 34.615 4.94 0.00 0.00 3.20
3106 3152 8.489489 AGACATAAATTGCAAGGATAGAAGAGA 58.511 33.333 4.94 0.00 0.00 3.10
3107 3153 8.674263 AGACATAAATTGCAAGGATAGAAGAG 57.326 34.615 4.94 0.00 0.00 2.85
3108 3154 7.716998 GGAGACATAAATTGCAAGGATAGAAGA 59.283 37.037 4.94 0.00 0.00 2.87
3109 3155 7.718753 AGGAGACATAAATTGCAAGGATAGAAG 59.281 37.037 4.94 0.00 0.00 2.85
3110 3156 7.577303 AGGAGACATAAATTGCAAGGATAGAA 58.423 34.615 4.94 0.00 0.00 2.10
3111 3157 7.071698 AGAGGAGACATAAATTGCAAGGATAGA 59.928 37.037 4.94 0.00 0.00 1.98
3112 3158 7.222872 AGAGGAGACATAAATTGCAAGGATAG 58.777 38.462 4.94 0.00 0.00 2.08
3113 3159 7.141758 AGAGGAGACATAAATTGCAAGGATA 57.858 36.000 4.94 0.00 0.00 2.59
3114 3160 6.011122 AGAGGAGACATAAATTGCAAGGAT 57.989 37.500 4.94 0.00 0.00 3.24
3115 3161 5.045651 TGAGAGGAGACATAAATTGCAAGGA 60.046 40.000 4.94 0.00 0.00 3.36
3116 3162 5.065731 GTGAGAGGAGACATAAATTGCAAGG 59.934 44.000 4.94 0.00 0.00 3.61
3117 3163 5.879223 AGTGAGAGGAGACATAAATTGCAAG 59.121 40.000 4.94 0.00 0.00 4.01
3118 3164 5.809001 AGTGAGAGGAGACATAAATTGCAA 58.191 37.500 0.00 0.00 0.00 4.08
3119 3165 5.426689 AGTGAGAGGAGACATAAATTGCA 57.573 39.130 0.00 0.00 0.00 4.08
3120 3166 9.364989 GATATAGTGAGAGGAGACATAAATTGC 57.635 37.037 0.00 0.00 0.00 3.56
3127 3173 9.106977 TGTAGTAGATATAGTGAGAGGAGACAT 57.893 37.037 0.00 0.00 0.00 3.06
3128 3174 8.493787 TGTAGTAGATATAGTGAGAGGAGACA 57.506 38.462 0.00 0.00 0.00 3.41
3129 3175 8.591072 ACTGTAGTAGATATAGTGAGAGGAGAC 58.409 40.741 0.00 0.00 34.79 3.36
3130 3176 8.730093 ACTGTAGTAGATATAGTGAGAGGAGA 57.270 38.462 0.00 0.00 34.79 3.71
3137 3183 9.993454 ACGACATAACTGTAGTAGATATAGTGA 57.007 33.333 0.00 0.00 39.14 3.41
3141 3187 9.433153 CCAGACGACATAACTGTAGTAGATATA 57.567 37.037 0.00 0.00 40.72 0.86
3142 3188 7.937942 ACCAGACGACATAACTGTAGTAGATAT 59.062 37.037 0.00 0.00 40.72 1.63
3143 3189 7.278135 ACCAGACGACATAACTGTAGTAGATA 58.722 38.462 0.00 0.00 40.72 1.98
3144 3190 6.120905 ACCAGACGACATAACTGTAGTAGAT 58.879 40.000 0.00 0.00 40.72 1.98
3145 3191 5.494724 ACCAGACGACATAACTGTAGTAGA 58.505 41.667 0.00 0.00 40.72 2.59
3146 3192 5.814764 ACCAGACGACATAACTGTAGTAG 57.185 43.478 0.00 0.00 40.72 2.57
3147 3193 6.579666 AAACCAGACGACATAACTGTAGTA 57.420 37.500 0.00 0.00 40.72 1.82
3148 3194 5.464030 AAACCAGACGACATAACTGTAGT 57.536 39.130 0.00 0.00 42.94 2.73
3149 3195 5.924254 TCAAAACCAGACGACATAACTGTAG 59.076 40.000 0.00 0.00 35.14 2.74
3150 3196 5.845103 TCAAAACCAGACGACATAACTGTA 58.155 37.500 0.00 0.00 35.14 2.74
3151 3197 4.699637 TCAAAACCAGACGACATAACTGT 58.300 39.130 0.00 0.00 38.67 3.55
3152 3198 5.666969 TTCAAAACCAGACGACATAACTG 57.333 39.130 0.00 0.00 0.00 3.16
3153 3199 6.092259 GCTATTCAAAACCAGACGACATAACT 59.908 38.462 0.00 0.00 0.00 2.24
3154 3200 6.128391 TGCTATTCAAAACCAGACGACATAAC 60.128 38.462 0.00 0.00 0.00 1.89
3155 3201 5.935206 TGCTATTCAAAACCAGACGACATAA 59.065 36.000 0.00 0.00 0.00 1.90
3156 3202 5.483811 TGCTATTCAAAACCAGACGACATA 58.516 37.500 0.00 0.00 0.00 2.29
3157 3203 4.323417 TGCTATTCAAAACCAGACGACAT 58.677 39.130 0.00 0.00 0.00 3.06
3158 3204 3.734463 TGCTATTCAAAACCAGACGACA 58.266 40.909 0.00 0.00 0.00 4.35
3159 3205 4.712763 CTTGCTATTCAAAACCAGACGAC 58.287 43.478 0.00 0.00 33.65 4.34
3160 3206 3.188460 GCTTGCTATTCAAAACCAGACGA 59.812 43.478 0.00 0.00 33.65 4.20
3161 3207 3.058293 TGCTTGCTATTCAAAACCAGACG 60.058 43.478 0.00 0.00 33.65 4.18
3162 3208 4.503741 TGCTTGCTATTCAAAACCAGAC 57.496 40.909 0.00 0.00 33.65 3.51
3163 3209 5.726980 ATTGCTTGCTATTCAAAACCAGA 57.273 34.783 0.00 0.00 33.65 3.86
3164 3210 6.038356 CCTATTGCTTGCTATTCAAAACCAG 58.962 40.000 0.00 0.00 33.65 4.00
3165 3211 5.105392 CCCTATTGCTTGCTATTCAAAACCA 60.105 40.000 0.00 0.00 33.65 3.67
3166 3212 5.127031 TCCCTATTGCTTGCTATTCAAAACC 59.873 40.000 0.00 0.00 33.65 3.27
3167 3213 6.036470 GTCCCTATTGCTTGCTATTCAAAAC 58.964 40.000 0.00 0.00 33.65 2.43
3168 3214 5.951747 AGTCCCTATTGCTTGCTATTCAAAA 59.048 36.000 0.00 0.00 33.65 2.44
3169 3215 5.357878 CAGTCCCTATTGCTTGCTATTCAAA 59.642 40.000 0.00 0.00 33.65 2.69
3170 3216 4.883585 CAGTCCCTATTGCTTGCTATTCAA 59.116 41.667 0.00 0.00 0.00 2.69
3171 3217 4.080356 ACAGTCCCTATTGCTTGCTATTCA 60.080 41.667 0.00 0.00 0.00 2.57
3172 3218 4.274459 CACAGTCCCTATTGCTTGCTATTC 59.726 45.833 0.00 0.00 0.00 1.75
3173 3219 4.202441 CACAGTCCCTATTGCTTGCTATT 58.798 43.478 0.00 0.00 0.00 1.73
3174 3220 3.200825 ACACAGTCCCTATTGCTTGCTAT 59.799 43.478 0.00 0.00 0.00 2.97
3175 3221 2.571653 ACACAGTCCCTATTGCTTGCTA 59.428 45.455 0.00 0.00 0.00 3.49
3176 3222 1.352352 ACACAGTCCCTATTGCTTGCT 59.648 47.619 0.00 0.00 0.00 3.91
3177 3223 1.826385 ACACAGTCCCTATTGCTTGC 58.174 50.000 0.00 0.00 0.00 4.01
3178 3224 4.745125 CGTATACACAGTCCCTATTGCTTG 59.255 45.833 3.32 0.00 0.00 4.01
3179 3225 4.404715 ACGTATACACAGTCCCTATTGCTT 59.595 41.667 3.32 0.00 0.00 3.91
3180 3226 3.958798 ACGTATACACAGTCCCTATTGCT 59.041 43.478 3.32 0.00 0.00 3.91
3181 3227 4.317671 ACGTATACACAGTCCCTATTGC 57.682 45.455 3.32 0.00 0.00 3.56
3182 3228 6.381481 TGTACGTATACACAGTCCCTATTG 57.619 41.667 0.00 0.00 36.34 1.90
3194 3240 3.557577 AGCGTGTTGTGTACGTATACA 57.442 42.857 19.72 19.72 43.09 2.29
3195 3241 3.913763 TGAAGCGTGTTGTGTACGTATAC 59.086 43.478 14.86 14.86 43.09 1.47
3196 3242 4.158020 TGAAGCGTGTTGTGTACGTATA 57.842 40.909 0.00 0.00 43.09 1.47
3197 3243 3.015934 TGAAGCGTGTTGTGTACGTAT 57.984 42.857 0.00 0.00 43.09 3.06
3198 3244 2.488639 TGAAGCGTGTTGTGTACGTA 57.511 45.000 0.00 0.00 43.09 3.57
3199 3245 1.642728 TTGAAGCGTGTTGTGTACGT 58.357 45.000 0.00 0.00 43.09 3.57
3200 3246 2.219903 TCATTGAAGCGTGTTGTGTACG 59.780 45.455 0.00 0.00 43.93 3.67
3201 3247 3.870723 TCATTGAAGCGTGTTGTGTAC 57.129 42.857 0.00 0.00 0.00 2.90
3202 3248 4.466567 CTTCATTGAAGCGTGTTGTGTA 57.533 40.909 13.20 0.00 32.78 2.90
3203 3249 3.338818 CTTCATTGAAGCGTGTTGTGT 57.661 42.857 13.20 0.00 32.78 3.72
3213 3259 3.374745 GTTGTGTGTGGCTTCATTGAAG 58.625 45.455 19.92 19.92 42.03 3.02
3214 3260 2.100584 GGTTGTGTGTGGCTTCATTGAA 59.899 45.455 0.00 0.00 0.00 2.69
3215 3261 1.680735 GGTTGTGTGTGGCTTCATTGA 59.319 47.619 0.00 0.00 0.00 2.57
3216 3262 1.269726 GGGTTGTGTGTGGCTTCATTG 60.270 52.381 0.00 0.00 0.00 2.82
3217 3263 1.039856 GGGTTGTGTGTGGCTTCATT 58.960 50.000 0.00 0.00 0.00 2.57
3218 3264 0.185901 AGGGTTGTGTGTGGCTTCAT 59.814 50.000 0.00 0.00 0.00 2.57
3219 3265 0.840617 TAGGGTTGTGTGTGGCTTCA 59.159 50.000 0.00 0.00 0.00 3.02
3220 3266 1.975660 TTAGGGTTGTGTGTGGCTTC 58.024 50.000 0.00 0.00 0.00 3.86
3221 3267 2.445682 TTTAGGGTTGTGTGTGGCTT 57.554 45.000 0.00 0.00 0.00 4.35
3222 3268 2.445682 TTTTAGGGTTGTGTGTGGCT 57.554 45.000 0.00 0.00 0.00 4.75
3242 3288 2.024414 GTCTGTGTGTGGCCTCTTTTT 58.976 47.619 3.32 0.00 0.00 1.94
3243 3289 1.212935 AGTCTGTGTGTGGCCTCTTTT 59.787 47.619 3.32 0.00 0.00 2.27
3244 3290 0.839946 AGTCTGTGTGTGGCCTCTTT 59.160 50.000 3.32 0.00 0.00 2.52
3245 3291 0.394565 GAGTCTGTGTGTGGCCTCTT 59.605 55.000 3.32 0.00 0.00 2.85
3246 3292 1.476007 GGAGTCTGTGTGTGGCCTCT 61.476 60.000 3.32 0.00 0.00 3.69
3247 3293 1.004440 GGAGTCTGTGTGTGGCCTC 60.004 63.158 3.32 0.00 0.00 4.70
3248 3294 1.460305 AGGAGTCTGTGTGTGGCCT 60.460 57.895 3.32 0.00 0.00 5.19
3249 3295 1.302033 CAGGAGTCTGTGTGTGGCC 60.302 63.158 0.00 0.00 36.30 5.36
3250 3296 1.748403 TCAGGAGTCTGTGTGTGGC 59.252 57.895 0.00 0.00 41.59 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.