Multiple sequence alignment - TraesCS2B01G358000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G358000 chr2B 100.000 3069 0 0 1 3069 510800781 510797713 0.000000e+00 5668
1 TraesCS2B01G358000 chr2D 86.458 1403 101 41 887 2236 432037303 432035937 0.000000e+00 1456
2 TraesCS2B01G358000 chr2D 87.950 722 52 13 2358 3067 432035916 432035218 0.000000e+00 819
3 TraesCS2B01G358000 chr2A 86.510 1364 93 42 940 2237 554428277 554429615 0.000000e+00 1415
4 TraesCS2B01G358000 chr2A 86.111 612 51 7 2460 3057 554450892 554451483 2.010000e-176 628
5 TraesCS2B01G358000 chr2A 92.079 101 5 3 852 949 554427158 554427258 4.130000e-29 139
6 TraesCS2B01G358000 chr2A 87.179 117 7 3 2358 2467 554429634 554429749 3.210000e-25 126
7 TraesCS2B01G358000 chr1D 87.424 827 78 6 1 820 432234760 432233953 0.000000e+00 928
8 TraesCS2B01G358000 chr1D 85.213 798 100 14 3 791 853445 852657 0.000000e+00 804
9 TraesCS2B01G358000 chr1D 84.252 127 20 0 2238 2364 407509446 407509572 1.160000e-24 124
10 TraesCS2B01G358000 chr7A 85.048 836 112 11 1 826 268985581 268984749 0.000000e+00 839
11 TraesCS2B01G358000 chr6B 84.707 837 113 10 1 826 117675772 117676604 0.000000e+00 822
12 TraesCS2B01G358000 chr6B 84.569 836 116 10 1 826 20377353 20378185 0.000000e+00 817
13 TraesCS2B01G358000 chr6B 83.429 700 88 15 137 826 77738826 77739507 2.600000e-175 625
14 TraesCS2B01G358000 chr6B 87.395 119 15 0 2244 2362 36133873 36133755 1.480000e-28 137
15 TraesCS2B01G358000 chr5B 84.417 815 113 12 23 826 521602825 521603636 0.000000e+00 789
16 TraesCS2B01G358000 chr5B 82.850 828 133 7 1 820 436814503 436815329 0.000000e+00 734
17 TraesCS2B01G358000 chr1B 86.067 689 81 10 1 683 11870158 11870837 0.000000e+00 726
18 TraesCS2B01G358000 chr5D 86.228 668 78 12 170 826 8422553 8421889 0.000000e+00 712
19 TraesCS2B01G358000 chr5D 85.714 119 17 0 2244 2362 405882765 405882883 3.210000e-25 126
20 TraesCS2B01G358000 chr4B 92.500 440 24 6 1 433 173717186 173717623 3.360000e-174 621
21 TraesCS2B01G358000 chr4A 88.333 120 14 0 2244 2363 714067117 714067236 8.870000e-31 145
22 TraesCS2B01G358000 chr7B 87.603 121 14 1 2244 2364 617570622 617570741 4.130000e-29 139
23 TraesCS2B01G358000 chr7B 87.826 115 13 1 2248 2361 527614391 527614505 1.920000e-27 134
24 TraesCS2B01G358000 chr3B 86.777 121 14 2 2244 2363 762487208 762487327 1.920000e-27 134
25 TraesCS2B01G358000 chr6D 86.555 119 16 0 2244 2362 4510921 4511039 6.900000e-27 132
26 TraesCS2B01G358000 chr1A 86.555 119 16 0 2244 2362 329250248 329250130 6.900000e-27 132


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G358000 chr2B 510797713 510800781 3068 True 5668.0 5668 100.000000 1 3069 1 chr2B.!!$R1 3068
1 TraesCS2B01G358000 chr2D 432035218 432037303 2085 True 1137.5 1456 87.204000 887 3067 2 chr2D.!!$R1 2180
2 TraesCS2B01G358000 chr2A 554450892 554451483 591 False 628.0 628 86.111000 2460 3057 1 chr2A.!!$F1 597
3 TraesCS2B01G358000 chr2A 554427158 554429749 2591 False 560.0 1415 88.589333 852 2467 3 chr2A.!!$F2 1615
4 TraesCS2B01G358000 chr1D 432233953 432234760 807 True 928.0 928 87.424000 1 820 1 chr1D.!!$R2 819
5 TraesCS2B01G358000 chr1D 852657 853445 788 True 804.0 804 85.213000 3 791 1 chr1D.!!$R1 788
6 TraesCS2B01G358000 chr7A 268984749 268985581 832 True 839.0 839 85.048000 1 826 1 chr7A.!!$R1 825
7 TraesCS2B01G358000 chr6B 117675772 117676604 832 False 822.0 822 84.707000 1 826 1 chr6B.!!$F3 825
8 TraesCS2B01G358000 chr6B 20377353 20378185 832 False 817.0 817 84.569000 1 826 1 chr6B.!!$F1 825
9 TraesCS2B01G358000 chr6B 77738826 77739507 681 False 625.0 625 83.429000 137 826 1 chr6B.!!$F2 689
10 TraesCS2B01G358000 chr5B 521602825 521603636 811 False 789.0 789 84.417000 23 826 1 chr5B.!!$F2 803
11 TraesCS2B01G358000 chr5B 436814503 436815329 826 False 734.0 734 82.850000 1 820 1 chr5B.!!$F1 819
12 TraesCS2B01G358000 chr1B 11870158 11870837 679 False 726.0 726 86.067000 1 683 1 chr1B.!!$F1 682
13 TraesCS2B01G358000 chr5D 8421889 8422553 664 True 712.0 712 86.228000 170 826 1 chr5D.!!$R1 656

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
885 931 0.104304 ACTAATCGCCCGTAAGCAGG 59.896 55.0 0.0 0.0 0.0 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2344 3504 0.033796 ATTGTACTCCCTCCGTCCGA 60.034 55.0 0.0 0.0 0.0 4.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 37 6.739565 GCAAGGAAAGTGGTCTTGATCAAATT 60.740 38.462 9.88 0.00 39.97 1.82
50 52 0.598065 AAATTGGTCGCTCAGGCAAC 59.402 50.000 0.00 0.00 38.60 4.17
84 86 1.154225 GTCATGTTTTCGCCTGCCG 60.154 57.895 0.00 0.00 38.61 5.69
225 229 5.507637 GGAGGTCTAGGATTCCGTGATATA 58.492 45.833 0.00 0.00 0.00 0.86
230 234 7.177041 AGGTCTAGGATTCCGTGATATAGAAAC 59.823 40.741 0.00 0.00 0.00 2.78
281 299 1.819288 GTGGAGAGTCATGACGGAAGA 59.181 52.381 19.85 3.21 36.20 2.87
282 300 2.231478 GTGGAGAGTCATGACGGAAGAA 59.769 50.000 19.85 3.39 36.20 2.52
283 301 2.897326 TGGAGAGTCATGACGGAAGAAA 59.103 45.455 19.85 1.80 36.20 2.52
284 302 3.254892 GGAGAGTCATGACGGAAGAAAC 58.745 50.000 19.85 7.11 36.20 2.78
285 303 3.056465 GGAGAGTCATGACGGAAGAAACT 60.056 47.826 19.85 9.98 36.20 2.66
286 304 4.561105 GAGAGTCATGACGGAAGAAACTT 58.439 43.478 19.85 0.00 36.20 2.66
287 305 4.561105 AGAGTCATGACGGAAGAAACTTC 58.439 43.478 19.85 8.09 36.20 3.01
288 306 4.282195 AGAGTCATGACGGAAGAAACTTCT 59.718 41.667 19.85 10.18 36.23 2.85
289 307 4.962155 AGTCATGACGGAAGAAACTTCTT 58.038 39.130 19.85 4.37 42.25 2.52
290 308 5.368989 AGTCATGACGGAAGAAACTTCTTT 58.631 37.500 19.85 0.00 40.88 2.52
291 309 5.237344 AGTCATGACGGAAGAAACTTCTTTG 59.763 40.000 19.85 5.31 40.88 2.77
292 310 5.236478 GTCATGACGGAAGAAACTTCTTTGA 59.764 40.000 10.69 2.79 46.84 2.69
293 311 5.466728 TCATGACGGAAGAAACTTCTTTGAG 59.533 40.000 6.18 4.23 46.84 3.02
294 312 4.766375 TGACGGAAGAAACTTCTTTGAGT 58.234 39.130 6.18 6.92 46.84 3.41
295 313 4.570772 TGACGGAAGAAACTTCTTTGAGTG 59.429 41.667 6.18 0.00 46.84 3.51
296 314 3.312697 ACGGAAGAAACTTCTTTGAGTGC 59.687 43.478 6.18 0.00 46.84 4.40
297 315 3.561725 CGGAAGAAACTTCTTTGAGTGCT 59.438 43.478 6.18 0.00 46.84 4.40
298 316 4.319118 CGGAAGAAACTTCTTTGAGTGCTC 60.319 45.833 6.18 0.00 46.84 4.26
312 348 4.261801 TGAGTGCTCAAATACTAAAGGCC 58.738 43.478 0.00 0.00 36.53 5.19
318 355 5.122711 TGCTCAAATACTAAAGGCCGTTTAC 59.877 40.000 9.85 0.00 0.00 2.01
336 373 6.038825 CCGTTTACTTCCCACAATGCAATATA 59.961 38.462 0.00 0.00 0.00 0.86
377 414 1.302752 GCCCATCGCAGATATGGCA 60.303 57.895 17.94 0.00 45.12 4.92
386 423 3.882288 TCGCAGATATGGCAAGCAATTTA 59.118 39.130 0.00 0.00 0.00 1.40
387 424 4.520111 TCGCAGATATGGCAAGCAATTTAT 59.480 37.500 0.00 0.00 0.00 1.40
388 425 5.704978 TCGCAGATATGGCAAGCAATTTATA 59.295 36.000 0.00 0.00 0.00 0.98
390 427 6.306356 CGCAGATATGGCAAGCAATTTATAAC 59.694 38.462 0.00 0.00 0.00 1.89
396 433 3.243401 GGCAAGCAATTTATAACGGGAGG 60.243 47.826 0.00 0.00 0.00 4.30
401 438 6.195600 AGCAATTTATAACGGGAGGGATAA 57.804 37.500 0.00 0.00 0.00 1.75
404 446 6.433093 GCAATTTATAACGGGAGGGATAACAT 59.567 38.462 0.00 0.00 0.00 2.71
451 493 4.632327 TGGAGACACCACAAACATATGA 57.368 40.909 10.38 0.00 44.64 2.15
455 497 4.335416 AGACACCACAAACATATGAAGGG 58.665 43.478 10.38 5.98 0.00 3.95
461 503 5.891551 ACCACAAACATATGAAGGGATAACC 59.108 40.000 10.38 0.00 40.67 2.85
468 510 2.489528 TGAAGGGATAACCGGATCCT 57.510 50.000 18.91 10.15 44.35 3.24
504 546 2.247635 AGAGGCCATTAGTGTCCCTAGA 59.752 50.000 5.01 0.00 0.00 2.43
517 559 0.818296 CCCTAGATCCTAATCCGCCG 59.182 60.000 0.00 0.00 31.78 6.46
541 583 1.366319 AGGTGGCAGAACTCCTTGAT 58.634 50.000 0.00 0.00 0.00 2.57
625 667 7.657336 CAGAAGAGATCCTAAAGATACCAGTC 58.343 42.308 0.00 0.00 34.42 3.51
670 712 0.960364 GGGCGTGGCATGAAGAAAGA 60.960 55.000 11.71 0.00 0.00 2.52
724 767 3.491792 GGATGATCTTGAGAACGAGGACC 60.492 52.174 0.00 0.00 0.00 4.46
743 786 0.324738 CAGTAGGGAGAGCTGGTGGA 60.325 60.000 0.00 0.00 0.00 4.02
751 794 1.552337 GAGAGCTGGTGGAATGAGACA 59.448 52.381 0.00 0.00 0.00 3.41
762 805 1.205893 GAATGAGACAGAGGGCTCGTT 59.794 52.381 4.75 4.75 41.64 3.85
770 813 2.526873 AGGGCTCGTTCACAGGGT 60.527 61.111 0.00 0.00 0.00 4.34
784 827 2.840651 CACAGGGTAGGAGGACAAGATT 59.159 50.000 0.00 0.00 0.00 2.40
793 836 2.553028 GGAGGACAAGATTTGGAGCACA 60.553 50.000 0.00 0.00 34.12 4.57
796 839 3.327757 AGGACAAGATTTGGAGCACACTA 59.672 43.478 0.00 0.00 34.12 2.74
799 842 4.910195 ACAAGATTTGGAGCACACTATGA 58.090 39.130 0.00 0.00 34.12 2.15
805 848 3.701205 TGGAGCACACTATGACACATT 57.299 42.857 0.00 0.00 0.00 2.71
817 860 2.054021 TGACACATTCAGGTCCCTTCA 58.946 47.619 0.00 0.00 33.09 3.02
820 863 3.490348 ACACATTCAGGTCCCTTCAAAG 58.510 45.455 0.00 0.00 0.00 2.77
821 864 3.117512 ACACATTCAGGTCCCTTCAAAGT 60.118 43.478 0.00 0.00 0.00 2.66
823 866 3.891366 ACATTCAGGTCCCTTCAAAGTTG 59.109 43.478 0.00 0.00 0.00 3.16
825 868 1.214175 TCAGGTCCCTTCAAAGTTGCA 59.786 47.619 0.00 0.00 0.00 4.08
826 869 2.031120 CAGGTCCCTTCAAAGTTGCAA 58.969 47.619 0.00 0.00 0.00 4.08
827 870 2.629617 CAGGTCCCTTCAAAGTTGCAAT 59.370 45.455 0.59 0.00 0.00 3.56
828 871 2.629617 AGGTCCCTTCAAAGTTGCAATG 59.370 45.455 0.59 0.00 0.00 2.82
829 872 2.627699 GGTCCCTTCAAAGTTGCAATGA 59.372 45.455 0.59 0.00 0.00 2.57
830 873 3.305608 GGTCCCTTCAAAGTTGCAATGAG 60.306 47.826 0.59 0.00 0.00 2.90
831 874 3.319122 GTCCCTTCAAAGTTGCAATGAGT 59.681 43.478 0.59 0.00 0.00 3.41
832 875 4.518970 GTCCCTTCAAAGTTGCAATGAGTA 59.481 41.667 0.59 0.00 0.00 2.59
833 876 4.518970 TCCCTTCAAAGTTGCAATGAGTAC 59.481 41.667 0.59 0.00 0.00 2.73
834 877 4.520492 CCCTTCAAAGTTGCAATGAGTACT 59.480 41.667 0.59 0.00 0.00 2.73
835 878 5.335191 CCCTTCAAAGTTGCAATGAGTACTC 60.335 44.000 16.32 16.32 0.00 2.59
836 879 5.335191 CCTTCAAAGTTGCAATGAGTACTCC 60.335 44.000 20.11 5.22 0.00 3.85
837 880 4.973168 TCAAAGTTGCAATGAGTACTCCT 58.027 39.130 20.11 7.68 0.00 3.69
838 881 4.997395 TCAAAGTTGCAATGAGTACTCCTC 59.003 41.667 20.11 7.05 40.89 3.71
868 911 2.067365 GGTTCAACCCAACCAAGACT 57.933 50.000 0.00 0.00 44.79 3.24
869 912 3.217681 GGTTCAACCCAACCAAGACTA 57.782 47.619 0.00 0.00 44.79 2.59
870 913 3.558033 GGTTCAACCCAACCAAGACTAA 58.442 45.455 0.00 0.00 44.79 2.24
871 914 4.149598 GGTTCAACCCAACCAAGACTAAT 58.850 43.478 0.00 0.00 44.79 1.73
872 915 4.217767 GGTTCAACCCAACCAAGACTAATC 59.782 45.833 0.00 0.00 44.79 1.75
873 916 3.670625 TCAACCCAACCAAGACTAATCG 58.329 45.455 0.00 0.00 0.00 3.34
885 931 0.104304 ACTAATCGCCCGTAAGCAGG 59.896 55.000 0.00 0.00 0.00 4.85
906 952 1.135402 GCTAAAGAAACGGCCCATGTG 60.135 52.381 0.00 0.00 0.00 3.21
951 2025 0.672711 GCCTTCGCCCTAACTCGTTT 60.673 55.000 0.00 0.00 0.00 3.60
957 2031 0.459759 GCCCTAACTCGTTTCCCTCG 60.460 60.000 0.00 0.00 0.00 4.63
1060 2141 0.744771 GACCTTCAATCCGGTGAGCC 60.745 60.000 0.00 0.00 32.62 4.70
1073 2154 0.907230 GTGAGCCCACCCTCTCTTCT 60.907 60.000 0.00 0.00 37.33 2.85
1082 2163 0.820871 CCCTCTCTTCTGTTCCTCCG 59.179 60.000 0.00 0.00 0.00 4.63
1087 2168 0.538977 TCTTCTGTTCCTCCGTCGGT 60.539 55.000 11.88 0.00 0.00 4.69
1139 2220 5.174037 TCCGGATGTTGGATTTTAAGAGT 57.826 39.130 0.00 0.00 0.00 3.24
1142 2223 5.095490 CGGATGTTGGATTTTAAGAGTTGC 58.905 41.667 0.00 0.00 0.00 4.17
1248 2329 3.569548 CCATAGACATCGAGGTGATTCG 58.430 50.000 7.79 0.00 41.79 3.34
1250 2331 0.103208 AGACATCGAGGTGATTCGGC 59.897 55.000 7.79 0.00 40.83 5.54
1275 2356 5.700373 GGTCCAATCTAATCTCAGATGCTTC 59.300 44.000 0.00 0.00 35.42 3.86
1276 2357 6.286758 GTCCAATCTAATCTCAGATGCTTCA 58.713 40.000 2.07 0.00 35.42 3.02
1284 2365 8.099537 TCTAATCTCAGATGCTTCACTTTTCTT 58.900 33.333 2.07 0.00 0.00 2.52
1294 2376 4.022762 GCTTCACTTTTCTTTCCCTTCCTC 60.023 45.833 0.00 0.00 0.00 3.71
1295 2377 4.100279 TCACTTTTCTTTCCCTTCCTCC 57.900 45.455 0.00 0.00 0.00 4.30
1298 2380 5.551977 TCACTTTTCTTTCCCTTCCTCCTAT 59.448 40.000 0.00 0.00 0.00 2.57
1303 2385 2.496679 TTCCCTTCCTCCTATCCCAG 57.503 55.000 0.00 0.00 0.00 4.45
1352 2436 7.966246 TTTTTCGTTTTGCTATGTACTCCTA 57.034 32.000 0.00 0.00 0.00 2.94
1442 2530 2.504367 CCTCTGGTAGGTGGTGTTTTG 58.496 52.381 0.00 0.00 40.94 2.44
1444 2532 3.551846 CTCTGGTAGGTGGTGTTTTGTT 58.448 45.455 0.00 0.00 0.00 2.83
1446 2534 2.621526 CTGGTAGGTGGTGTTTTGTTCC 59.378 50.000 0.00 0.00 0.00 3.62
1447 2535 2.025226 TGGTAGGTGGTGTTTTGTTCCA 60.025 45.455 0.00 0.00 0.00 3.53
1448 2536 3.227614 GGTAGGTGGTGTTTTGTTCCAT 58.772 45.455 0.00 0.00 33.68 3.41
1449 2537 3.254903 GGTAGGTGGTGTTTTGTTCCATC 59.745 47.826 0.00 0.00 33.68 3.51
1450 2538 3.312736 AGGTGGTGTTTTGTTCCATCT 57.687 42.857 0.00 0.00 37.80 2.90
1451 2539 3.642141 AGGTGGTGTTTTGTTCCATCTT 58.358 40.909 0.00 0.00 39.34 2.40
1452 2540 4.030216 AGGTGGTGTTTTGTTCCATCTTT 58.970 39.130 0.00 0.00 39.34 2.52
1453 2541 5.205056 AGGTGGTGTTTTGTTCCATCTTTA 58.795 37.500 0.00 0.00 39.34 1.85
1454 2542 5.838521 AGGTGGTGTTTTGTTCCATCTTTAT 59.161 36.000 0.00 0.00 39.34 1.40
1455 2543 7.007723 AGGTGGTGTTTTGTTCCATCTTTATA 58.992 34.615 0.00 0.00 39.34 0.98
1456 2544 7.507616 AGGTGGTGTTTTGTTCCATCTTTATAA 59.492 33.333 0.00 0.00 39.34 0.98
1501 2596 2.037251 TGGAAGTTCAGTAGCACTGTCC 59.963 50.000 5.01 13.05 46.03 4.02
1506 2601 3.580458 AGTTCAGTAGCACTGTCCATTCT 59.420 43.478 13.59 4.98 46.03 2.40
1507 2602 4.772624 AGTTCAGTAGCACTGTCCATTCTA 59.227 41.667 13.59 0.00 46.03 2.10
1508 2603 5.246203 AGTTCAGTAGCACTGTCCATTCTAA 59.754 40.000 13.59 0.00 46.03 2.10
1535 2630 5.782047 CACCTGCAAATTAAACTGATGGAA 58.218 37.500 0.00 0.00 0.00 3.53
1543 2638 7.628366 GCAAATTAAACTGATGGAATCCTTCGA 60.628 37.037 10.12 0.00 44.73 3.71
1643 2746 6.376018 TGCCAGTTTTTACCCATACTATGTTC 59.624 38.462 0.00 0.00 0.00 3.18
1652 2755 9.483916 TTTACCCATACTATGTTCATATTGACG 57.516 33.333 0.00 0.00 0.00 4.35
1676 2781 6.019881 CGCTTATCATGTTCACTGTTCGATTA 60.020 38.462 0.00 0.00 0.00 1.75
1679 2784 9.855361 CTTATCATGTTCACTGTTCGATTATTC 57.145 33.333 0.00 0.00 0.00 1.75
1696 2801 2.418368 TTCATCAACCCCTTGATCGG 57.582 50.000 0.00 0.00 44.04 4.18
1700 2805 2.961531 TCAACCCCTTGATCGGAAAA 57.038 45.000 0.00 0.00 31.00 2.29
1735 2842 4.143347 CCGAAAACAAATGAATTTCTGCCG 60.143 41.667 0.00 0.00 32.28 5.69
1736 2843 4.143347 CGAAAACAAATGAATTTCTGCCGG 60.143 41.667 0.00 0.00 32.28 6.13
1744 2868 1.269448 GAATTTCTGCCGGCTCAAACA 59.731 47.619 29.70 4.55 0.00 2.83
1747 2871 1.327303 TTCTGCCGGCTCAAACAAAT 58.673 45.000 29.70 0.00 0.00 2.32
1748 2872 2.192664 TCTGCCGGCTCAAACAAATA 57.807 45.000 29.70 1.03 0.00 1.40
1749 2873 2.083774 TCTGCCGGCTCAAACAAATAG 58.916 47.619 29.70 12.52 0.00 1.73
1753 2877 4.771903 TGCCGGCTCAAACAAATAGTATA 58.228 39.130 29.70 0.00 0.00 1.47
1757 2881 7.147983 TGCCGGCTCAAACAAATAGTATAAAAT 60.148 33.333 29.70 0.00 0.00 1.82
1758 2882 7.167468 GCCGGCTCAAACAAATAGTATAAAATG 59.833 37.037 22.15 0.00 0.00 2.32
1769 2904 9.869844 CAAATAGTATAAAATGAGAAGCCTTCG 57.130 33.333 0.00 0.00 34.02 3.79
1775 2910 1.016130 ATGAGAAGCCTTCGTGCACG 61.016 55.000 32.76 32.76 41.45 5.34
1839 2974 2.282040 GCCCTGCAAGTGAGCTGT 60.282 61.111 0.00 0.00 34.99 4.40
1892 3027 8.699749 TCTGTATATTGACGAAAAATATCGCAG 58.300 33.333 16.35 16.35 46.51 5.18
1893 3028 8.360325 TGTATATTGACGAAAAATATCGCAGT 57.640 30.769 0.00 0.00 46.51 4.40
1898 3033 4.565166 TGACGAAAAATATCGCAGTACCTG 59.435 41.667 0.00 0.00 46.51 4.00
1909 3044 5.468540 TCGCAGTACCTGATGCTAATAAT 57.531 39.130 3.66 0.00 40.34 1.28
1911 3046 6.621613 TCGCAGTACCTGATGCTAATAATAG 58.378 40.000 3.66 0.00 40.34 1.73
1912 3047 6.208797 TCGCAGTACCTGATGCTAATAATAGT 59.791 38.462 3.66 0.00 40.34 2.12
1913 3048 7.392393 TCGCAGTACCTGATGCTAATAATAGTA 59.608 37.037 3.66 0.00 40.34 1.82
1914 3049 7.485277 CGCAGTACCTGATGCTAATAATAGTAC 59.515 40.741 3.66 0.00 40.34 2.73
1915 3050 7.485277 GCAGTACCTGATGCTAATAATAGTACG 59.515 40.741 0.00 0.00 39.38 3.67
1916 3051 7.968956 CAGTACCTGATGCTAATAATAGTACGG 59.031 40.741 0.00 0.00 34.28 4.02
1917 3052 6.912951 ACCTGATGCTAATAATAGTACGGT 57.087 37.500 0.00 0.00 0.00 4.83
1919 3054 8.413309 ACCTGATGCTAATAATAGTACGGTAA 57.587 34.615 0.00 0.00 0.00 2.85
1920 3055 8.302438 ACCTGATGCTAATAATAGTACGGTAAC 58.698 37.037 0.00 0.00 0.00 2.50
1921 3056 8.301720 CCTGATGCTAATAATAGTACGGTAACA 58.698 37.037 0.00 0.00 0.00 2.41
1934 3069 6.803642 AGTACGGTAACATAGATTCCAGTTC 58.196 40.000 0.00 0.00 0.00 3.01
1940 3075 3.539604 ACATAGATTCCAGTTCTGCAGC 58.460 45.455 9.47 0.00 0.00 5.25
1942 3077 2.399916 AGATTCCAGTTCTGCAGCTC 57.600 50.000 9.47 4.27 0.00 4.09
1944 3079 2.039480 AGATTCCAGTTCTGCAGCTCAA 59.961 45.455 9.47 0.00 0.00 3.02
1945 3080 1.888215 TTCCAGTTCTGCAGCTCAAG 58.112 50.000 9.47 0.00 0.00 3.02
1956 3091 3.748083 TGCAGCTCAAGTCTGAATTCTT 58.252 40.909 7.05 0.00 33.54 2.52
2181 3324 3.697542 GTGTCACCCTAACAAACCAGTTT 59.302 43.478 0.00 0.00 33.07 2.66
2182 3325 4.158949 GTGTCACCCTAACAAACCAGTTTT 59.841 41.667 0.00 0.00 33.07 2.43
2230 3376 4.036380 CACAAGTCTGTAAACTGGGGTTTC 59.964 45.833 0.00 0.00 43.62 2.78
2246 3406 3.499537 GGGTTTCGTTCCAATTTCGTACT 59.500 43.478 0.00 0.00 0.00 2.73
2247 3407 4.023792 GGGTTTCGTTCCAATTTCGTACTT 60.024 41.667 0.00 0.00 0.00 2.24
2248 3408 5.142265 GGTTTCGTTCCAATTTCGTACTTC 58.858 41.667 0.00 0.00 0.00 3.01
2249 3409 4.996062 TTCGTTCCAATTTCGTACTTCC 57.004 40.909 0.00 0.00 0.00 3.46
2250 3410 3.328505 TCGTTCCAATTTCGTACTTCCC 58.671 45.455 0.00 0.00 0.00 3.97
2251 3411 2.417586 CGTTCCAATTTCGTACTTCCCC 59.582 50.000 0.00 0.00 0.00 4.81
2252 3412 2.751259 GTTCCAATTTCGTACTTCCCCC 59.249 50.000 0.00 0.00 0.00 5.40
2253 3413 1.065998 TCCAATTTCGTACTTCCCCCG 60.066 52.381 0.00 0.00 0.00 5.73
2254 3414 1.339342 CCAATTTCGTACTTCCCCCGT 60.339 52.381 0.00 0.00 0.00 5.28
2255 3415 2.004733 CAATTTCGTACTTCCCCCGTC 58.995 52.381 0.00 0.00 0.00 4.79
2256 3416 1.565067 ATTTCGTACTTCCCCCGTCT 58.435 50.000 0.00 0.00 0.00 4.18
2257 3417 0.604578 TTTCGTACTTCCCCCGTCTG 59.395 55.000 0.00 0.00 0.00 3.51
2258 3418 0.251297 TTCGTACTTCCCCCGTCTGA 60.251 55.000 0.00 0.00 0.00 3.27
2259 3419 0.251297 TCGTACTTCCCCCGTCTGAA 60.251 55.000 0.00 0.00 0.00 3.02
2260 3420 0.604578 CGTACTTCCCCCGTCTGAAA 59.395 55.000 0.00 0.00 0.00 2.69
2261 3421 1.001181 CGTACTTCCCCCGTCTGAAAA 59.999 52.381 0.00 0.00 0.00 2.29
2262 3422 2.354403 CGTACTTCCCCCGTCTGAAAAT 60.354 50.000 0.00 0.00 0.00 1.82
2263 3423 3.119029 CGTACTTCCCCCGTCTGAAAATA 60.119 47.826 0.00 0.00 0.00 1.40
2264 3424 3.345508 ACTTCCCCCGTCTGAAAATAC 57.654 47.619 0.00 0.00 0.00 1.89
2265 3425 2.910977 ACTTCCCCCGTCTGAAAATACT 59.089 45.455 0.00 0.00 0.00 2.12
2266 3426 3.329814 ACTTCCCCCGTCTGAAAATACTT 59.670 43.478 0.00 0.00 0.00 2.24
2267 3427 3.343941 TCCCCCGTCTGAAAATACTTG 57.656 47.619 0.00 0.00 0.00 3.16
2268 3428 2.640826 TCCCCCGTCTGAAAATACTTGT 59.359 45.455 0.00 0.00 0.00 3.16
2269 3429 3.007635 CCCCCGTCTGAAAATACTTGTC 58.992 50.000 0.00 0.00 0.00 3.18
2270 3430 2.671396 CCCCGTCTGAAAATACTTGTCG 59.329 50.000 0.00 0.00 0.00 4.35
2271 3431 2.671396 CCCGTCTGAAAATACTTGTCGG 59.329 50.000 0.00 0.00 36.00 4.79
2272 3432 3.581755 CCGTCTGAAAATACTTGTCGGA 58.418 45.455 0.00 0.00 38.03 4.55
2273 3433 3.367025 CCGTCTGAAAATACTTGTCGGAC 59.633 47.826 0.00 0.00 42.03 4.79
2274 3434 3.985279 CGTCTGAAAATACTTGTCGGACA 59.015 43.478 6.76 6.76 44.50 4.02
2275 3435 4.446385 CGTCTGAAAATACTTGTCGGACAA 59.554 41.667 21.30 21.30 44.50 3.18
2276 3436 5.050634 CGTCTGAAAATACTTGTCGGACAAA 60.051 40.000 22.60 10.91 44.50 2.83
2277 3437 6.347402 CGTCTGAAAATACTTGTCGGACAAAT 60.347 38.462 22.60 16.57 44.50 2.32
2278 3438 6.797033 GTCTGAAAATACTTGTCGGACAAATG 59.203 38.462 22.60 15.05 43.96 2.32
2279 3439 5.457140 TGAAAATACTTGTCGGACAAATGC 58.543 37.500 22.60 9.76 37.69 3.56
2280 3440 5.009110 TGAAAATACTTGTCGGACAAATGCA 59.991 36.000 22.60 11.80 37.69 3.96
2281 3441 4.419522 AATACTTGTCGGACAAATGCAC 57.580 40.909 22.60 0.00 37.69 4.57
2282 3442 1.674359 ACTTGTCGGACAAATGCACA 58.326 45.000 22.60 0.90 37.69 4.57
2283 3443 2.020720 ACTTGTCGGACAAATGCACAA 58.979 42.857 22.60 0.18 37.69 3.33
2284 3444 2.425312 ACTTGTCGGACAAATGCACAAA 59.575 40.909 22.60 0.00 37.69 2.83
2285 3445 3.119316 ACTTGTCGGACAAATGCACAAAA 60.119 39.130 22.60 0.00 37.69 2.44
2286 3446 3.510388 TGTCGGACAAATGCACAAAAA 57.490 38.095 8.68 0.00 0.00 1.94
2287 3447 4.052159 TGTCGGACAAATGCACAAAAAT 57.948 36.364 8.68 0.00 0.00 1.82
2288 3448 5.188327 TGTCGGACAAATGCACAAAAATA 57.812 34.783 8.68 0.00 0.00 1.40
2289 3449 5.592054 TGTCGGACAAATGCACAAAAATAA 58.408 33.333 8.68 0.00 0.00 1.40
2290 3450 6.042777 TGTCGGACAAATGCACAAAAATAAA 58.957 32.000 8.68 0.00 0.00 1.40
2291 3451 6.703607 TGTCGGACAAATGCACAAAAATAAAT 59.296 30.769 8.68 0.00 0.00 1.40
2292 3452 7.867909 TGTCGGACAAATGCACAAAAATAAATA 59.132 29.630 8.68 0.00 0.00 1.40
2293 3453 8.868916 GTCGGACAAATGCACAAAAATAAATAT 58.131 29.630 2.62 0.00 0.00 1.28
2332 3492 9.490379 AATACGTCTAGATACATCCATTTTTCC 57.510 33.333 0.00 0.00 0.00 3.13
2333 3493 7.125792 ACGTCTAGATACATCCATTTTTCCT 57.874 36.000 0.00 0.00 0.00 3.36
2334 3494 8.246430 ACGTCTAGATACATCCATTTTTCCTA 57.754 34.615 0.00 0.00 0.00 2.94
2335 3495 8.142551 ACGTCTAGATACATCCATTTTTCCTAC 58.857 37.037 0.00 0.00 0.00 3.18
2336 3496 8.141909 CGTCTAGATACATCCATTTTTCCTACA 58.858 37.037 0.00 0.00 0.00 2.74
2337 3497 9.832445 GTCTAGATACATCCATTTTTCCTACAA 57.168 33.333 0.00 0.00 0.00 2.41
2339 3499 9.838339 CTAGATACATCCATTTTTCCTACAAGT 57.162 33.333 0.00 0.00 0.00 3.16
2346 3506 9.289303 CATCCATTTTTCCTACAAGTATTTTCG 57.711 33.333 0.00 0.00 0.00 3.46
2347 3507 7.822658 TCCATTTTTCCTACAAGTATTTTCGG 58.177 34.615 0.00 0.00 0.00 4.30
2348 3508 7.666388 TCCATTTTTCCTACAAGTATTTTCGGA 59.334 33.333 0.00 0.00 0.00 4.55
2349 3509 7.753580 CCATTTTTCCTACAAGTATTTTCGGAC 59.246 37.037 0.00 0.00 0.00 4.79
2350 3510 6.470557 TTTTCCTACAAGTATTTTCGGACG 57.529 37.500 0.00 0.00 0.00 4.79
2351 3511 4.114058 TCCTACAAGTATTTTCGGACGG 57.886 45.455 0.00 0.00 0.00 4.79
2352 3512 3.763360 TCCTACAAGTATTTTCGGACGGA 59.237 43.478 0.00 0.00 0.00 4.69
2353 3513 4.110482 CCTACAAGTATTTTCGGACGGAG 58.890 47.826 0.00 0.00 0.00 4.63
2354 3514 2.968675 ACAAGTATTTTCGGACGGAGG 58.031 47.619 0.00 0.00 0.00 4.30
2355 3515 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2356 3516 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
2357 3517 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
2358 3518 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
2359 3519 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
2360 3520 0.890683 TTTTCGGACGGAGGGAGTAC 59.109 55.000 0.00 0.00 0.00 2.73
2361 3521 0.251297 TTTCGGACGGAGGGAGTACA 60.251 55.000 0.00 0.00 0.00 2.90
2362 3522 0.251297 TTCGGACGGAGGGAGTACAA 60.251 55.000 0.00 0.00 0.00 2.41
2366 3526 2.354403 CGGACGGAGGGAGTACAATTTT 60.354 50.000 0.00 0.00 0.00 1.82
2389 3549 4.847512 TCCCTGGATTTTACTGTCCTTGTA 59.152 41.667 0.00 0.00 35.49 2.41
2447 3614 0.947244 GTGTGACTGGCCTGTGAAAG 59.053 55.000 21.29 1.30 0.00 2.62
2820 3993 3.902086 GCGACGCCCTACCCTCTC 61.902 72.222 9.14 0.00 0.00 3.20
2830 4003 0.756070 CTACCCTCTCGTTCCCCCTC 60.756 65.000 0.00 0.00 0.00 4.30
2835 4008 1.066071 CCTCTCGTTCCCCCTCTTTTC 60.066 57.143 0.00 0.00 0.00 2.29
2837 4010 3.097614 CTCTCGTTCCCCCTCTTTTCTA 58.902 50.000 0.00 0.00 0.00 2.10
2839 4012 3.705072 TCTCGTTCCCCCTCTTTTCTATC 59.295 47.826 0.00 0.00 0.00 2.08
2840 4013 2.770232 TCGTTCCCCCTCTTTTCTATCC 59.230 50.000 0.00 0.00 0.00 2.59
2849 4022 4.363999 CCTCTTTTCTATCCTGTACTGCG 58.636 47.826 0.00 0.00 0.00 5.18
2850 4023 4.363999 CTCTTTTCTATCCTGTACTGCGG 58.636 47.826 0.00 0.00 0.00 5.69
2861 4034 1.540707 TGTACTGCGGTCGTACATGAA 59.459 47.619 0.00 0.00 41.47 2.57
2868 4041 2.475519 GCGGTCGTACATGAATGTTTGG 60.476 50.000 0.00 0.00 41.97 3.28
2873 4046 3.308595 TCGTACATGAATGTTTGGCGATC 59.691 43.478 0.00 0.00 41.97 3.69
2877 4050 2.017138 TGAATGTTTGGCGATCGCTA 57.983 45.000 36.25 30.27 41.60 4.26
2895 4068 3.249799 CGCTACGGCAAATTGGATGATTA 59.750 43.478 0.00 0.00 38.60 1.75
2896 4069 4.083324 CGCTACGGCAAATTGGATGATTAT 60.083 41.667 0.00 0.00 38.60 1.28
2924 4097 0.685097 TGCACCCTCGAGTTTAAGCT 59.315 50.000 12.31 0.00 0.00 3.74
2952 4127 3.006537 AGGAGAGCTTAGTTGCACGTTTA 59.993 43.478 0.00 0.00 34.99 2.01
2954 4129 3.326747 AGAGCTTAGTTGCACGTTTAGG 58.673 45.455 0.00 0.00 34.99 2.69
2955 4130 3.064931 GAGCTTAGTTGCACGTTTAGGT 58.935 45.455 0.00 0.00 34.99 3.08
2961 4136 1.193874 GTTGCACGTTTAGGTTCGAGG 59.806 52.381 0.00 0.00 0.00 4.63
2971 4146 0.912486 AGGTTCGAGGGAGATTTGGG 59.088 55.000 0.00 0.00 0.00 4.12
2974 4149 2.357075 GTTCGAGGGAGATTTGGGAAC 58.643 52.381 0.00 0.00 0.00 3.62
3005 4193 2.919228 ACCTGATCGGTGGATTTTAGC 58.081 47.619 8.20 0.00 46.80 3.09
3039 4227 6.401955 GCTAAAGGAGAGCGATTATGATTC 57.598 41.667 0.00 0.00 0.00 2.52
3041 4229 6.310224 GCTAAAGGAGAGCGATTATGATTCTC 59.690 42.308 0.00 0.00 34.86 2.87
3049 4237 2.740981 CGATTATGATTCTCAGGGCTGC 59.259 50.000 0.00 0.00 0.00 5.25
3067 4255 1.561076 TGCAGAGCACTGGAATATGGT 59.439 47.619 13.26 0.00 41.25 3.55
3068 4256 2.025981 TGCAGAGCACTGGAATATGGTT 60.026 45.455 13.26 0.00 41.25 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 15 5.244626 CCAATTTGATCAAGACCACTTTCCT 59.755 40.000 8.41 0.00 33.70 3.36
20 22 2.487762 GCGACCAATTTGATCAAGACCA 59.512 45.455 8.41 0.00 0.00 4.02
50 52 7.962964 AAACATGACATAGAATATACCGGTG 57.037 36.000 19.93 0.00 0.00 4.94
84 86 5.354792 TGTTATACTTTCACATAAACCCCGC 59.645 40.000 0.00 0.00 0.00 6.13
166 169 3.640498 TGAATCATTGTGTCCCAAGCAAA 59.360 39.130 0.00 0.00 36.25 3.68
207 211 7.239438 AGGTTTCTATATCACGGAATCCTAGA 58.761 38.462 0.00 0.00 37.39 2.43
213 217 8.491958 AGGTTAAAGGTTTCTATATCACGGAAT 58.508 33.333 0.00 0.00 0.00 3.01
225 229 3.697619 AGCGCTAGGTTAAAGGTTTCT 57.302 42.857 8.99 0.00 0.00 2.52
230 234 2.608090 GCAAGTAGCGCTAGGTTAAAGG 59.392 50.000 19.48 4.02 0.00 3.11
259 277 1.627864 TCCGTCATGACTCTCCACAA 58.372 50.000 22.95 0.00 0.00 3.33
289 307 4.700213 GGCCTTTAGTATTTGAGCACTCAA 59.300 41.667 8.99 8.99 46.72 3.02
290 308 4.261801 GGCCTTTAGTATTTGAGCACTCA 58.738 43.478 0.00 0.00 37.91 3.41
291 309 3.309954 CGGCCTTTAGTATTTGAGCACTC 59.690 47.826 0.00 0.00 0.00 3.51
292 310 3.270877 CGGCCTTTAGTATTTGAGCACT 58.729 45.455 0.00 0.00 0.00 4.40
293 311 3.007635 ACGGCCTTTAGTATTTGAGCAC 58.992 45.455 0.00 0.00 0.00 4.40
294 312 3.343941 ACGGCCTTTAGTATTTGAGCA 57.656 42.857 0.00 0.00 0.00 4.26
295 313 4.696899 AAACGGCCTTTAGTATTTGAGC 57.303 40.909 0.00 0.00 0.00 4.26
296 314 6.980051 AGTAAACGGCCTTTAGTATTTGAG 57.020 37.500 0.00 0.00 0.00 3.02
297 315 6.372381 GGAAGTAAACGGCCTTTAGTATTTGA 59.628 38.462 0.00 0.00 29.19 2.69
298 316 6.403964 GGGAAGTAAACGGCCTTTAGTATTTG 60.404 42.308 0.00 0.00 29.19 2.32
312 348 3.634568 TTGCATTGTGGGAAGTAAACG 57.365 42.857 0.00 0.00 0.00 3.60
318 355 6.294899 CCTCCAATATATTGCATTGTGGGAAG 60.295 42.308 18.40 2.53 36.48 3.46
336 373 1.213926 GATCCCAACTCTGCCTCCAAT 59.786 52.381 0.00 0.00 0.00 3.16
377 414 4.513406 TCCCTCCCGTTATAAATTGCTT 57.487 40.909 0.00 0.00 0.00 3.91
386 423 4.019591 GCCTTATGTTATCCCTCCCGTTAT 60.020 45.833 0.00 0.00 0.00 1.89
387 424 3.325716 GCCTTATGTTATCCCTCCCGTTA 59.674 47.826 0.00 0.00 0.00 3.18
388 425 2.105993 GCCTTATGTTATCCCTCCCGTT 59.894 50.000 0.00 0.00 0.00 4.44
390 427 1.003233 GGCCTTATGTTATCCCTCCCG 59.997 57.143 0.00 0.00 0.00 5.14
396 433 5.416271 TCGGATTAGGCCTTATGTTATCC 57.584 43.478 12.58 12.76 0.00 2.59
401 438 3.314693 TCCTTCGGATTAGGCCTTATGT 58.685 45.455 12.58 0.00 32.59 2.29
433 475 4.042809 TCCCTTCATATGTTTGTGGTGTCT 59.957 41.667 1.90 0.00 0.00 3.41
451 493 2.245582 CGTAGGATCCGGTTATCCCTT 58.754 52.381 16.65 4.29 45.74 3.95
468 510 3.456644 TGGCCTCTTGAAATTATCCCGTA 59.543 43.478 3.32 0.00 0.00 4.02
504 546 0.969894 CTTCTCCGGCGGATTAGGAT 59.030 55.000 31.23 0.00 33.04 3.24
517 559 0.035915 GGAGTTCTGCCACCTTCTCC 60.036 60.000 0.00 0.00 35.45 3.71
541 583 2.605837 TCCAATGCGCCGAAGTATAA 57.394 45.000 4.18 0.00 0.00 0.98
625 667 2.188994 GGCAGCCTCCTAGTGCAG 59.811 66.667 3.29 0.00 39.05 4.41
670 712 6.034591 CGATCGAACAGTAAATACACCTCTT 58.965 40.000 10.26 0.00 0.00 2.85
724 767 0.324738 TCCACCAGCTCTCCCTACTG 60.325 60.000 0.00 0.00 0.00 2.74
743 786 1.205893 GAACGAGCCCTCTGTCTCATT 59.794 52.381 0.00 0.00 0.00 2.57
751 794 2.286523 CCCTGTGAACGAGCCCTCT 61.287 63.158 0.00 0.00 0.00 3.69
762 805 1.431633 TCTTGTCCTCCTACCCTGTGA 59.568 52.381 0.00 0.00 0.00 3.58
770 813 3.055094 GTGCTCCAAATCTTGTCCTCCTA 60.055 47.826 0.00 0.00 0.00 2.94
784 827 3.701205 ATGTGTCATAGTGTGCTCCAA 57.299 42.857 0.00 0.00 0.00 3.53
793 836 3.454858 AGGGACCTGAATGTGTCATAGT 58.545 45.455 0.00 0.00 35.07 2.12
796 839 2.644299 TGAAGGGACCTGAATGTGTCAT 59.356 45.455 0.00 0.00 35.07 3.06
799 842 3.117512 ACTTTGAAGGGACCTGAATGTGT 60.118 43.478 0.00 0.00 0.00 3.72
805 848 1.214175 TGCAACTTTGAAGGGACCTGA 59.786 47.619 0.00 0.00 0.00 3.86
828 871 7.174946 TGAACCAAAATCAATTGAGGAGTACTC 59.825 37.037 14.87 14.87 46.78 2.59
829 872 7.004086 TGAACCAAAATCAATTGAGGAGTACT 58.996 34.615 14.54 0.00 31.84 2.73
830 873 7.214467 TGAACCAAAATCAATTGAGGAGTAC 57.786 36.000 14.54 2.53 31.84 2.73
831 874 7.255801 GGTTGAACCAAAATCAATTGAGGAGTA 60.256 37.037 14.54 0.00 38.89 2.59
832 875 6.462909 GGTTGAACCAAAATCAATTGAGGAGT 60.463 38.462 14.54 4.18 38.89 3.85
833 876 5.928264 GGTTGAACCAAAATCAATTGAGGAG 59.072 40.000 14.54 3.92 38.89 3.69
834 877 5.221621 GGGTTGAACCAAAATCAATTGAGGA 60.222 40.000 17.27 0.00 41.02 3.71
835 878 4.996758 GGGTTGAACCAAAATCAATTGAGG 59.003 41.667 17.27 11.66 41.02 3.86
836 879 5.609423 TGGGTTGAACCAAAATCAATTGAG 58.391 37.500 17.27 2.20 41.02 3.02
837 880 5.620738 TGGGTTGAACCAAAATCAATTGA 57.379 34.783 17.27 11.26 41.02 2.57
849 892 2.067365 AGTCTTGGTTGGGTTGAACC 57.933 50.000 5.62 5.62 45.06 3.62
850 893 4.083484 CGATTAGTCTTGGTTGGGTTGAAC 60.083 45.833 0.00 0.00 0.00 3.18
863 906 1.479323 TGCTTACGGGCGATTAGTCTT 59.521 47.619 0.00 0.00 34.52 3.01
865 908 1.488527 CTGCTTACGGGCGATTAGTC 58.511 55.000 0.00 0.00 34.52 2.59
866 909 0.104304 CCTGCTTACGGGCGATTAGT 59.896 55.000 0.00 0.00 34.87 2.24
868 911 1.444250 CCCTGCTTACGGGCGATTA 59.556 57.895 0.00 0.00 41.53 1.75
869 912 2.189521 CCCTGCTTACGGGCGATT 59.810 61.111 0.00 0.00 41.53 3.34
885 931 0.455815 CATGGGCCGTTTCTTTAGCC 59.544 55.000 0.00 0.00 44.99 3.93
906 952 2.042944 GGGTTCATTCCTGGGCCC 60.043 66.667 17.59 17.59 32.40 5.80
914 960 2.112815 CGCGGGAAGGGGTTCATTC 61.113 63.158 0.00 0.00 33.37 2.67
957 2031 3.775654 CAGGAGAGTGGGCGGGAC 61.776 72.222 0.00 0.00 0.00 4.46
968 2042 4.166888 GGCGGCAGATGCAGGAGA 62.167 66.667 3.07 0.00 44.36 3.71
1060 2141 1.552792 GAGGAACAGAAGAGAGGGTGG 59.447 57.143 0.00 0.00 0.00 4.61
1073 2154 1.068417 CACAACCGACGGAGGAACA 59.932 57.895 23.38 0.00 34.73 3.18
1082 2163 0.591659 GAGAAAAGGGCACAACCGAC 59.408 55.000 0.00 0.00 40.62 4.79
1087 2168 2.732289 GCCAGAGAAAAGGGCACAA 58.268 52.632 0.00 0.00 46.92 3.33
1229 2310 2.029828 GCCGAATCACCTCGATGTCTAT 60.030 50.000 0.00 0.00 41.44 1.98
1248 2329 2.365617 TCTGAGATTAGATTGGACCGCC 59.634 50.000 0.00 0.00 0.00 6.13
1250 2331 3.993081 GCATCTGAGATTAGATTGGACCG 59.007 47.826 0.00 0.00 35.28 4.79
1275 2356 4.105754 AGGAGGAAGGGAAAGAAAAGTG 57.894 45.455 0.00 0.00 0.00 3.16
1276 2357 5.044772 GGATAGGAGGAAGGGAAAGAAAAGT 60.045 44.000 0.00 0.00 0.00 2.66
1284 2365 1.695989 GCTGGGATAGGAGGAAGGGAA 60.696 57.143 0.00 0.00 0.00 3.97
1294 2376 1.580066 TTTGGGTGGGCTGGGATAGG 61.580 60.000 0.00 0.00 0.00 2.57
1295 2377 0.334676 TTTTGGGTGGGCTGGGATAG 59.665 55.000 0.00 0.00 0.00 2.08
1298 2380 2.200092 GTTTTGGGTGGGCTGGGA 59.800 61.111 0.00 0.00 0.00 4.37
1303 2385 0.389025 CAGAACAGTTTTGGGTGGGC 59.611 55.000 0.00 0.00 0.00 5.36
1347 2431 7.270779 TGAAACATTCTCATCTGATGTAGGAG 58.729 38.462 16.66 7.51 0.00 3.69
1348 2432 7.093156 ACTGAAACATTCTCATCTGATGTAGGA 60.093 37.037 16.66 10.88 0.00 2.94
1349 2433 7.046652 ACTGAAACATTCTCATCTGATGTAGG 58.953 38.462 16.66 8.99 0.00 3.18
1350 2434 8.489990 AACTGAAACATTCTCATCTGATGTAG 57.510 34.615 16.66 12.52 0.00 2.74
1352 2436 7.756395 AAACTGAAACATTCTCATCTGATGT 57.244 32.000 16.66 0.00 0.00 3.06
1448 2536 9.466497 AAAGCCTTGTTCATCATCTTATAAAGA 57.534 29.630 0.00 0.00 42.69 2.52
1449 2537 9.512435 CAAAGCCTTGTTCATCATCTTATAAAG 57.488 33.333 0.00 0.00 0.00 1.85
1450 2538 9.023962 ACAAAGCCTTGTTCATCATCTTATAAA 57.976 29.630 0.00 0.00 43.45 1.40
1451 2539 8.579850 ACAAAGCCTTGTTCATCATCTTATAA 57.420 30.769 0.00 0.00 43.45 0.98
1469 2557 3.381590 ACTGAACTTCCAAGAACAAAGCC 59.618 43.478 0.00 0.00 0.00 4.35
1535 2630 3.502356 GGACTAGGAAGGATCGAAGGAT 58.498 50.000 0.00 0.00 34.96 3.24
1543 2638 3.032459 GAGAAACCGGACTAGGAAGGAT 58.968 50.000 9.46 0.00 34.73 3.24
1604 2707 3.648716 TGGCACAGATAGCTGCAAA 57.351 47.368 8.16 0.00 46.26 3.68
1643 2746 7.067728 CAGTGAACATGATAAGCGTCAATATG 58.932 38.462 0.00 0.00 0.00 1.78
1652 2755 5.725110 ATCGAACAGTGAACATGATAAGC 57.275 39.130 0.00 0.00 0.00 3.09
1676 2781 2.509548 TCCGATCAAGGGGTTGATGAAT 59.490 45.455 5.37 0.00 41.38 2.57
1679 2784 2.418368 TTCCGATCAAGGGGTTGATG 57.582 50.000 5.37 0.00 41.38 3.07
1709 2816 4.990426 CAGAAATTCATTTGTTTTCGGCCT 59.010 37.500 0.00 0.00 35.14 5.19
1710 2817 4.377328 GCAGAAATTCATTTGTTTTCGGCC 60.377 41.667 15.44 0.00 41.55 6.13
1744 2868 9.614792 ACGAAGGCTTCTCATTTTATACTATTT 57.385 29.630 23.74 0.00 0.00 1.40
1747 2871 6.479001 GCACGAAGGCTTCTCATTTTATACTA 59.521 38.462 23.74 0.00 0.00 1.82
1748 2872 5.294552 GCACGAAGGCTTCTCATTTTATACT 59.705 40.000 23.74 0.00 0.00 2.12
1749 2873 5.064707 TGCACGAAGGCTTCTCATTTTATAC 59.935 40.000 23.74 3.65 34.04 1.47
1753 2877 2.030805 GTGCACGAAGGCTTCTCATTTT 60.031 45.455 23.74 0.00 34.04 1.82
1757 2881 1.664649 CGTGCACGAAGGCTTCTCA 60.665 57.895 34.93 15.58 43.02 3.27
1758 2882 1.372997 TCGTGCACGAAGGCTTCTC 60.373 57.895 37.68 13.39 46.30 2.87
1775 2910 4.491676 ACAAACAAAGCATCATGAGCATC 58.508 39.130 16.20 0.41 0.00 3.91
1776 2911 4.530710 ACAAACAAAGCATCATGAGCAT 57.469 36.364 16.20 4.93 0.00 3.79
1779 2914 9.588774 CAAATTAAACAAACAAAGCATCATGAG 57.411 29.630 0.09 0.00 0.00 2.90
1824 2959 0.590195 GTTCACAGCTCACTTGCAGG 59.410 55.000 0.00 0.00 34.99 4.85
1839 2974 3.493129 CGACAAACATCCGAAGAAGTTCA 59.507 43.478 5.50 0.00 32.94 3.18
1892 3027 7.824672 ACCGTACTATTATTAGCATCAGGTAC 58.175 38.462 0.00 0.00 0.00 3.34
1893 3028 9.519191 TTACCGTACTATTATTAGCATCAGGTA 57.481 33.333 0.00 0.00 0.00 3.08
1909 3044 7.776969 AGAACTGGAATCTATGTTACCGTACTA 59.223 37.037 0.00 0.00 0.00 1.82
1911 3046 6.696148 CAGAACTGGAATCTATGTTACCGTAC 59.304 42.308 0.00 0.00 0.00 3.67
1912 3047 6.682113 GCAGAACTGGAATCTATGTTACCGTA 60.682 42.308 3.99 0.00 0.00 4.02
1913 3048 5.661458 CAGAACTGGAATCTATGTTACCGT 58.339 41.667 0.00 0.00 0.00 4.83
1914 3049 4.508124 GCAGAACTGGAATCTATGTTACCG 59.492 45.833 3.99 0.00 0.00 4.02
1915 3050 5.428253 TGCAGAACTGGAATCTATGTTACC 58.572 41.667 3.99 0.00 0.00 2.85
1916 3051 5.007136 GCTGCAGAACTGGAATCTATGTTAC 59.993 44.000 20.43 0.00 0.00 2.50
1917 3052 5.104776 AGCTGCAGAACTGGAATCTATGTTA 60.105 40.000 20.43 0.00 0.00 2.41
1919 3054 3.199508 AGCTGCAGAACTGGAATCTATGT 59.800 43.478 20.43 0.00 0.00 2.29
1920 3055 3.806380 AGCTGCAGAACTGGAATCTATG 58.194 45.455 20.43 0.00 0.00 2.23
1921 3056 3.453717 TGAGCTGCAGAACTGGAATCTAT 59.546 43.478 20.43 0.00 0.00 1.98
1923 3058 1.627329 TGAGCTGCAGAACTGGAATCT 59.373 47.619 20.43 0.33 0.00 2.40
1925 3060 2.224719 ACTTGAGCTGCAGAACTGGAAT 60.225 45.455 20.43 0.00 0.00 3.01
1931 3066 2.160822 TCAGACTTGAGCTGCAGAAC 57.839 50.000 20.43 10.79 33.45 3.01
1934 3069 3.336468 AGAATTCAGACTTGAGCTGCAG 58.664 45.455 10.11 10.11 34.15 4.41
1940 3075 6.204301 TCTGCAAGAAAGAATTCAGACTTGAG 59.796 38.462 26.80 21.88 42.31 3.02
1942 3077 6.309712 TCTGCAAGAAAGAATTCAGACTTG 57.690 37.500 22.31 22.31 42.31 3.16
1944 3079 5.002516 CCTCTGCAAGAAAGAATTCAGACT 58.997 41.667 8.44 0.55 46.34 3.24
1945 3080 4.379290 GCCTCTGCAAGAAAGAATTCAGAC 60.379 45.833 8.44 0.00 46.34 3.51
1956 3091 0.035881 CTGGACAGCCTCTGCAAGAA 59.964 55.000 0.00 0.00 46.34 2.52
2181 3324 1.199558 GGGCGGCGTGTTATTTAACAA 59.800 47.619 9.37 0.00 46.54 2.83
2182 3325 0.803740 GGGCGGCGTGTTATTTAACA 59.196 50.000 9.37 0.00 43.32 2.41
2191 3334 4.015406 TGAATCAGGGCGGCGTGT 62.015 61.111 27.65 12.58 0.00 4.49
2192 3335 3.499737 GTGAATCAGGGCGGCGTG 61.500 66.667 24.03 24.03 0.00 5.34
2230 3376 2.417586 GGGGAAGTACGAAATTGGAACG 59.582 50.000 0.00 0.00 0.00 3.95
2246 3406 3.073356 ACAAGTATTTTCAGACGGGGGAA 59.927 43.478 0.00 0.00 0.00 3.97
2247 3407 2.640826 ACAAGTATTTTCAGACGGGGGA 59.359 45.455 0.00 0.00 0.00 4.81
2248 3408 3.007635 GACAAGTATTTTCAGACGGGGG 58.992 50.000 0.00 0.00 0.00 5.40
2249 3409 2.671396 CGACAAGTATTTTCAGACGGGG 59.329 50.000 0.00 0.00 0.00 5.73
2250 3410 2.671396 CCGACAAGTATTTTCAGACGGG 59.329 50.000 0.00 0.00 35.24 5.28
2251 3411 3.367025 GTCCGACAAGTATTTTCAGACGG 59.633 47.826 0.00 0.00 39.30 4.79
2252 3412 3.985279 TGTCCGACAAGTATTTTCAGACG 59.015 43.478 0.00 0.00 0.00 4.18
2253 3413 5.917541 TTGTCCGACAAGTATTTTCAGAC 57.082 39.130 9.99 0.00 32.34 3.51
2254 3414 6.567701 GCATTTGTCCGACAAGTATTTTCAGA 60.568 38.462 13.51 0.00 39.53 3.27
2255 3415 5.569059 GCATTTGTCCGACAAGTATTTTCAG 59.431 40.000 13.51 0.00 39.53 3.02
2256 3416 5.009110 TGCATTTGTCCGACAAGTATTTTCA 59.991 36.000 13.51 4.75 39.53 2.69
2257 3417 5.342259 GTGCATTTGTCCGACAAGTATTTTC 59.658 40.000 13.51 2.58 39.53 2.29
2258 3418 5.219633 GTGCATTTGTCCGACAAGTATTTT 58.780 37.500 13.51 0.00 39.53 1.82
2259 3419 4.277174 TGTGCATTTGTCCGACAAGTATTT 59.723 37.500 13.51 0.00 39.53 1.40
2260 3420 3.818210 TGTGCATTTGTCCGACAAGTATT 59.182 39.130 13.51 0.00 39.53 1.89
2261 3421 3.407698 TGTGCATTTGTCCGACAAGTAT 58.592 40.909 13.51 3.62 39.53 2.12
2262 3422 2.839975 TGTGCATTTGTCCGACAAGTA 58.160 42.857 13.51 1.28 39.53 2.24
2263 3423 1.674359 TGTGCATTTGTCCGACAAGT 58.326 45.000 13.51 8.64 39.53 3.16
2264 3424 2.772568 TTGTGCATTTGTCCGACAAG 57.227 45.000 13.51 5.27 39.53 3.16
2265 3425 3.510388 TTTTGTGCATTTGTCCGACAA 57.490 38.095 9.99 9.99 36.11 3.18
2266 3426 3.510388 TTTTTGTGCATTTGTCCGACA 57.490 38.095 0.00 0.00 0.00 4.35
2267 3427 6.517914 TTTATTTTTGTGCATTTGTCCGAC 57.482 33.333 0.00 0.00 0.00 4.79
2268 3428 8.994429 ATATTTATTTTTGTGCATTTGTCCGA 57.006 26.923 0.00 0.00 0.00 4.55
2306 3466 9.490379 GGAAAAATGGATGTATCTAGACGTATT 57.510 33.333 0.00 0.00 0.00 1.89
2307 3467 8.871125 AGGAAAAATGGATGTATCTAGACGTAT 58.129 33.333 0.00 0.00 0.00 3.06
2308 3468 8.246430 AGGAAAAATGGATGTATCTAGACGTA 57.754 34.615 0.00 0.00 0.00 3.57
2309 3469 7.125792 AGGAAAAATGGATGTATCTAGACGT 57.874 36.000 0.00 0.00 0.00 4.34
2310 3470 8.141909 TGTAGGAAAAATGGATGTATCTAGACG 58.858 37.037 0.00 0.00 0.00 4.18
2311 3471 9.832445 TTGTAGGAAAAATGGATGTATCTAGAC 57.168 33.333 0.00 0.00 0.00 2.59
2313 3473 9.838339 ACTTGTAGGAAAAATGGATGTATCTAG 57.162 33.333 0.00 0.00 0.00 2.43
2320 3480 9.289303 CGAAAATACTTGTAGGAAAAATGGATG 57.711 33.333 0.00 0.00 0.00 3.51
2321 3481 8.466798 CCGAAAATACTTGTAGGAAAAATGGAT 58.533 33.333 0.00 0.00 0.00 3.41
2322 3482 7.666388 TCCGAAAATACTTGTAGGAAAAATGGA 59.334 33.333 0.00 0.00 0.00 3.41
2323 3483 7.753580 GTCCGAAAATACTTGTAGGAAAAATGG 59.246 37.037 0.00 0.00 0.00 3.16
2324 3484 7.480542 CGTCCGAAAATACTTGTAGGAAAAATG 59.519 37.037 0.00 0.00 0.00 2.32
2325 3485 7.361457 CCGTCCGAAAATACTTGTAGGAAAAAT 60.361 37.037 0.00 0.00 0.00 1.82
2326 3486 6.073112 CCGTCCGAAAATACTTGTAGGAAAAA 60.073 38.462 0.00 0.00 0.00 1.94
2327 3487 5.409214 CCGTCCGAAAATACTTGTAGGAAAA 59.591 40.000 0.00 0.00 0.00 2.29
2328 3488 4.931002 CCGTCCGAAAATACTTGTAGGAAA 59.069 41.667 0.00 0.00 0.00 3.13
2329 3489 4.220382 TCCGTCCGAAAATACTTGTAGGAA 59.780 41.667 0.00 0.00 0.00 3.36
2330 3490 3.763360 TCCGTCCGAAAATACTTGTAGGA 59.237 43.478 0.00 0.00 0.00 2.94
2331 3491 4.110482 CTCCGTCCGAAAATACTTGTAGG 58.890 47.826 0.00 0.00 0.00 3.18
2332 3492 4.110482 CCTCCGTCCGAAAATACTTGTAG 58.890 47.826 0.00 0.00 0.00 2.74
2333 3493 3.119029 CCCTCCGTCCGAAAATACTTGTA 60.119 47.826 0.00 0.00 0.00 2.41
2334 3494 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
2335 3495 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
2336 3496 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
2337 3497 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
2338 3498 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
2339 3499 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
2340 3500 1.479730 GTACTCCCTCCGTCCGAAAAT 59.520 52.381 0.00 0.00 0.00 1.82
2341 3501 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
2342 3502 0.251297 TGTACTCCCTCCGTCCGAAA 60.251 55.000 0.00 0.00 0.00 3.46
2343 3503 0.251297 TTGTACTCCCTCCGTCCGAA 60.251 55.000 0.00 0.00 0.00 4.30
2344 3504 0.033796 ATTGTACTCCCTCCGTCCGA 60.034 55.000 0.00 0.00 0.00 4.55
2345 3505 0.822164 AATTGTACTCCCTCCGTCCG 59.178 55.000 0.00 0.00 0.00 4.79
2346 3506 3.268330 GAAAATTGTACTCCCTCCGTCC 58.732 50.000 0.00 0.00 0.00 4.79
2347 3507 3.268330 GGAAAATTGTACTCCCTCCGTC 58.732 50.000 0.00 0.00 0.00 4.79
2348 3508 2.026542 GGGAAAATTGTACTCCCTCCGT 60.027 50.000 9.40 0.00 44.81 4.69
2349 3509 2.640184 GGGAAAATTGTACTCCCTCCG 58.360 52.381 9.40 0.00 44.81 4.63
2354 3514 6.605471 AAAATCCAGGGAAAATTGTACTCC 57.395 37.500 0.00 0.00 0.00 3.85
2355 3515 8.244113 CAGTAAAATCCAGGGAAAATTGTACTC 58.756 37.037 0.00 0.00 0.00 2.59
2356 3516 7.728532 ACAGTAAAATCCAGGGAAAATTGTACT 59.271 33.333 0.00 0.00 0.00 2.73
2357 3517 7.892609 ACAGTAAAATCCAGGGAAAATTGTAC 58.107 34.615 0.00 0.00 0.00 2.90
2358 3518 7.177744 GGACAGTAAAATCCAGGGAAAATTGTA 59.822 37.037 0.00 0.00 34.87 2.41
2359 3519 6.014584 GGACAGTAAAATCCAGGGAAAATTGT 60.015 38.462 0.00 0.00 34.87 2.71
2360 3520 6.211384 AGGACAGTAAAATCCAGGGAAAATTG 59.789 38.462 0.00 0.00 37.47 2.32
2361 3521 6.322931 AGGACAGTAAAATCCAGGGAAAATT 58.677 36.000 0.00 0.00 37.47 1.82
2362 3522 5.903923 AGGACAGTAAAATCCAGGGAAAAT 58.096 37.500 0.00 0.00 37.47 1.82
2366 3526 3.655777 ACAAGGACAGTAAAATCCAGGGA 59.344 43.478 0.00 0.00 37.47 4.20
2369 3529 9.626045 GATTTTTACAAGGACAGTAAAATCCAG 57.374 33.333 10.81 0.00 45.47 3.86
2389 3549 2.046285 CCCAGCGCGGAGGATTTTT 61.046 57.895 17.96 0.00 36.56 1.94
2447 3614 2.368875 TCCAGAGACCACCACTCTTTTC 59.631 50.000 0.00 0.00 41.94 2.29
2565 3732 3.414700 CGAGGCGAACAGGTGTGC 61.415 66.667 0.00 0.00 0.00 4.57
2819 3992 2.770232 GGATAGAAAAGAGGGGGAACGA 59.230 50.000 0.00 0.00 0.00 3.85
2820 3993 2.772515 AGGATAGAAAAGAGGGGGAACG 59.227 50.000 0.00 0.00 0.00 3.95
2830 4003 4.113354 GACCGCAGTACAGGATAGAAAAG 58.887 47.826 8.71 0.00 0.00 2.27
2835 4008 1.022735 ACGACCGCAGTACAGGATAG 58.977 55.000 8.71 3.12 0.00 2.08
2837 4010 0.737219 GTACGACCGCAGTACAGGAT 59.263 55.000 8.71 0.00 42.77 3.24
2839 4012 1.878070 TGTACGACCGCAGTACAGG 59.122 57.895 10.51 0.00 46.38 4.00
2849 4022 2.475519 CGCCAAACATTCATGTACGACC 60.476 50.000 0.00 0.00 40.80 4.79
2850 4023 2.413796 TCGCCAAACATTCATGTACGAC 59.586 45.455 0.00 0.00 40.80 4.34
2861 4034 1.151777 CCGTAGCGATCGCCAAACAT 61.152 55.000 34.89 18.77 43.17 2.71
2868 4041 0.654472 CAATTTGCCGTAGCGATCGC 60.654 55.000 32.15 32.15 44.31 4.58
2873 4046 1.013596 TCATCCAATTTGCCGTAGCG 58.986 50.000 0.00 0.00 44.31 4.26
2877 4050 9.691362 GTTAATTATAATCATCCAATTTGCCGT 57.309 29.630 0.00 0.00 0.00 5.68
2895 4068 5.099042 ACTCGAGGGTGCAAGTTAATTAT 57.901 39.130 18.41 0.00 0.00 1.28
2896 4069 4.546829 ACTCGAGGGTGCAAGTTAATTA 57.453 40.909 18.41 0.00 0.00 1.40
2924 4097 3.261643 TGCAACTAAGCTCTCCTGAATCA 59.738 43.478 0.00 0.00 34.99 2.57
2952 4127 0.912486 CCCAAATCTCCCTCGAACCT 59.088 55.000 0.00 0.00 0.00 3.50
2954 4129 2.357075 GTTCCCAAATCTCCCTCGAAC 58.643 52.381 0.00 0.00 0.00 3.95
2955 4130 1.280998 GGTTCCCAAATCTCCCTCGAA 59.719 52.381 0.00 0.00 0.00 3.71
2961 4136 1.064389 CCTCCTGGTTCCCAAATCTCC 60.064 57.143 0.00 0.00 30.80 3.71
2971 4146 1.908483 CAGGTAGCCCTCCTGGTTC 59.092 63.158 10.43 0.00 46.03 3.62
2976 4151 1.152440 CCGATCAGGTAGCCCTCCT 60.152 63.158 0.00 0.00 39.89 3.69
3005 4193 2.427453 TCTCCTTTAGCGCTCTACAAGG 59.573 50.000 16.34 20.71 36.05 3.61
3039 4227 2.436292 GTGCTCTGCAGCCCTGAG 60.436 66.667 9.47 1.69 46.26 3.35
3041 4229 2.746671 CAGTGCTCTGCAGCCCTG 60.747 66.667 9.47 2.00 46.26 4.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.