Multiple sequence alignment - TraesCS2B01G357700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G357700 chr2B 100.000 2905 0 0 1 2905 510785600 510788504 0.000000e+00 5365
1 TraesCS2B01G357700 chr2B 87.020 547 70 1 2262 2808 510792753 510793298 1.480000e-172 616
2 TraesCS2B01G357700 chr2B 76.981 265 47 13 683 938 731719893 731719634 3.900000e-29 139
3 TraesCS2B01G357700 chr2A 92.879 1980 97 19 937 2893 554520872 554518914 0.000000e+00 2835
4 TraesCS2B01G357700 chr2A 86.289 547 74 1 2262 2808 554512318 554511773 6.930000e-166 593
5 TraesCS2B01G357700 chr2D 96.316 1113 34 5 934 2045 431968684 431969790 0.000000e+00 1821
6 TraesCS2B01G357700 chr2D 93.597 859 47 4 2039 2895 432000079 432000931 0.000000e+00 1275
7 TraesCS2B01G357700 chr2D 85.375 547 79 1 2262 2808 432029813 432030358 1.510000e-157 566
8 TraesCS2B01G357700 chr7D 88.413 397 28 11 533 918 141646117 141645728 2.040000e-126 462
9 TraesCS2B01G357700 chr7D 93.443 183 12 0 1 183 141647325 141647143 3.690000e-69 272
10 TraesCS2B01G357700 chr7D 78.195 266 44 12 683 938 349316481 349316220 1.080000e-34 158
11 TraesCS2B01G357700 chr4B 96.350 274 10 0 235 508 64389772 64390045 4.410000e-123 451
12 TraesCS2B01G357700 chr4B 95.985 274 9 2 237 509 595954873 595955145 7.390000e-121 444
13 TraesCS2B01G357700 chr7B 96.324 272 10 0 237 508 501191583 501191854 5.710000e-122 448
14 TraesCS2B01G357700 chr5B 96.310 271 10 0 237 507 84566952 84567222 2.050000e-121 446
15 TraesCS2B01G357700 chr5B 96.310 271 10 0 237 507 84569094 84569364 2.050000e-121 446
16 TraesCS2B01G357700 chr5B 96.296 270 10 0 242 511 342661638 342661369 7.390000e-121 444
17 TraesCS2B01G357700 chr5B 95.956 272 11 0 237 508 624418522 624418793 2.660000e-120 442
18 TraesCS2B01G357700 chr3B 96.296 270 9 1 239 508 649957844 649958112 2.660000e-120 442
19 TraesCS2B01G357700 chr6B 95.956 272 10 1 237 508 322309975 322309705 9.560000e-120 440
20 TraesCS2B01G357700 chr1B 90.909 253 18 4 688 938 92586902 92586653 4.640000e-88 335
21 TraesCS2B01G357700 chrUn 91.129 124 8 3 818 938 466775850 466775727 6.440000e-37 165
22 TraesCS2B01G357700 chr5A 75.875 257 51 11 689 938 564191784 564192036 1.410000e-23 121
23 TraesCS2B01G357700 chr6D 77.612 201 38 7 743 939 452344876 452345073 6.580000e-22 115


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G357700 chr2B 510785600 510788504 2904 False 5365 5365 100.000 1 2905 1 chr2B.!!$F1 2904
1 TraesCS2B01G357700 chr2B 510792753 510793298 545 False 616 616 87.020 2262 2808 1 chr2B.!!$F2 546
2 TraesCS2B01G357700 chr2A 554518914 554520872 1958 True 2835 2835 92.879 937 2893 1 chr2A.!!$R2 1956
3 TraesCS2B01G357700 chr2A 554511773 554512318 545 True 593 593 86.289 2262 2808 1 chr2A.!!$R1 546
4 TraesCS2B01G357700 chr2D 431968684 431969790 1106 False 1821 1821 96.316 934 2045 1 chr2D.!!$F1 1111
5 TraesCS2B01G357700 chr2D 432000079 432000931 852 False 1275 1275 93.597 2039 2895 1 chr2D.!!$F2 856
6 TraesCS2B01G357700 chr2D 432029813 432030358 545 False 566 566 85.375 2262 2808 1 chr2D.!!$F3 546
7 TraesCS2B01G357700 chr7D 141645728 141647325 1597 True 367 462 90.928 1 918 2 chr7D.!!$R2 917
8 TraesCS2B01G357700 chr5B 84566952 84569364 2412 False 446 446 96.310 237 507 2 chr5B.!!$F2 270

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
215 216 0.178932 ATGTGCGGATAGGCTAGGGA 60.179 55.0 0.00 0.00 0.00 4.20 F
523 524 0.249741 CCCCAAAGTATACCGAGCGG 60.250 60.0 7.48 7.48 42.03 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1519 1995 1.971357 GTGTGGTGGAGAGAAGGAGAA 59.029 52.381 0.0 0.0 0.00 2.87 R
2322 3831 0.528684 CTCGCCCTTGTCGAATCTCC 60.529 60.000 0.0 0.0 35.38 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.135315 GTCATGGTGTCACATGCGC 59.865 57.895 0.00 0.00 46.02 6.09
29 30 2.173382 GTGTCACATGCGCCGTTC 59.827 61.111 4.18 0.00 0.00 3.95
32 33 3.109547 TCACATGCGCCGTTCGAC 61.110 61.111 4.18 0.00 41.67 4.20
35 36 3.195002 CATGCGCCGTTCGACCAT 61.195 61.111 4.18 0.00 41.67 3.55
69 70 2.766313 CCATATTGAAGGGATTCGCGA 58.234 47.619 3.71 3.71 0.00 5.87
126 127 6.568869 TGACTCTAGCTCTAGAATTTTCAGC 58.431 40.000 7.88 0.00 41.22 4.26
141 142 3.808466 TTCAGCTAGCTAGATGTGGTG 57.192 47.619 32.00 18.12 40.41 4.17
152 153 3.040147 AGATGTGGTGAAGTGGTTACG 57.960 47.619 0.00 0.00 0.00 3.18
164 165 2.132762 GTGGTTACGGTGACAAGAGTG 58.867 52.381 5.38 0.00 0.00 3.51
165 166 1.069513 TGGTTACGGTGACAAGAGTGG 59.930 52.381 5.38 0.00 0.00 4.00
183 184 4.024670 AGTGGTACTCCAGTAAAGGCTAG 58.975 47.826 0.00 0.00 44.71 3.42
184 185 4.021916 GTGGTACTCCAGTAAAGGCTAGA 58.978 47.826 0.00 0.00 45.24 2.43
185 186 4.465305 GTGGTACTCCAGTAAAGGCTAGAA 59.535 45.833 0.00 0.00 45.24 2.10
186 187 5.046807 GTGGTACTCCAGTAAAGGCTAGAAA 60.047 44.000 0.00 0.00 45.24 2.52
187 188 5.046807 TGGTACTCCAGTAAAGGCTAGAAAC 60.047 44.000 0.00 0.00 39.03 2.78
188 189 5.046807 GGTACTCCAGTAAAGGCTAGAAACA 60.047 44.000 0.00 0.00 31.52 2.83
189 190 5.763876 ACTCCAGTAAAGGCTAGAAACAT 57.236 39.130 0.00 0.00 0.00 2.71
190 191 5.735766 ACTCCAGTAAAGGCTAGAAACATC 58.264 41.667 0.00 0.00 0.00 3.06
191 192 5.485708 ACTCCAGTAAAGGCTAGAAACATCT 59.514 40.000 0.00 0.00 0.00 2.90
192 193 6.013293 ACTCCAGTAAAGGCTAGAAACATCTT 60.013 38.462 0.00 0.00 0.00 2.40
193 194 6.407202 TCCAGTAAAGGCTAGAAACATCTTC 58.593 40.000 0.00 0.00 0.00 2.87
194 195 6.013725 TCCAGTAAAGGCTAGAAACATCTTCA 60.014 38.462 0.00 0.00 0.00 3.02
195 196 6.314896 CCAGTAAAGGCTAGAAACATCTTCAG 59.685 42.308 0.00 0.00 0.00 3.02
196 197 7.099764 CAGTAAAGGCTAGAAACATCTTCAGA 58.900 38.462 0.00 0.00 0.00 3.27
197 198 7.768120 CAGTAAAGGCTAGAAACATCTTCAGAT 59.232 37.037 0.00 0.00 34.56 2.90
208 209 3.324117 CATCTTCAGATGTGCGGATAGG 58.676 50.000 8.45 0.00 45.10 2.57
209 210 1.069204 TCTTCAGATGTGCGGATAGGC 59.931 52.381 0.00 0.00 0.00 3.93
210 211 1.069823 CTTCAGATGTGCGGATAGGCT 59.930 52.381 0.00 0.00 0.00 4.58
211 212 1.995376 TCAGATGTGCGGATAGGCTA 58.005 50.000 0.00 0.00 0.00 3.93
212 213 1.889170 TCAGATGTGCGGATAGGCTAG 59.111 52.381 0.00 0.00 0.00 3.42
213 214 1.067283 CAGATGTGCGGATAGGCTAGG 60.067 57.143 0.00 0.00 0.00 3.02
214 215 0.247736 GATGTGCGGATAGGCTAGGG 59.752 60.000 0.00 0.00 0.00 3.53
215 216 0.178932 ATGTGCGGATAGGCTAGGGA 60.179 55.000 0.00 0.00 0.00 4.20
216 217 1.113517 TGTGCGGATAGGCTAGGGAC 61.114 60.000 0.00 4.23 0.00 4.46
217 218 1.901948 TGCGGATAGGCTAGGGACG 60.902 63.158 0.00 3.19 0.00 4.79
218 219 1.902432 GCGGATAGGCTAGGGACGT 60.902 63.158 0.00 0.00 0.00 4.34
219 220 0.607489 GCGGATAGGCTAGGGACGTA 60.607 60.000 0.00 0.00 0.00 3.57
220 221 1.163554 CGGATAGGCTAGGGACGTAC 58.836 60.000 0.00 0.00 0.00 3.67
221 222 1.271271 CGGATAGGCTAGGGACGTACT 60.271 57.143 0.00 0.00 0.00 2.73
222 223 2.161030 GGATAGGCTAGGGACGTACTG 58.839 57.143 0.00 0.00 0.00 2.74
223 224 2.488710 GGATAGGCTAGGGACGTACTGT 60.489 54.545 0.00 0.00 0.00 3.55
224 225 3.244700 GGATAGGCTAGGGACGTACTGTA 60.245 52.174 0.00 0.00 0.00 2.74
225 226 2.345124 AGGCTAGGGACGTACTGTAG 57.655 55.000 0.00 0.26 0.00 2.74
226 227 0.667453 GGCTAGGGACGTACTGTAGC 59.333 60.000 19.00 19.00 36.23 3.58
227 228 1.386533 GCTAGGGACGTACTGTAGCA 58.613 55.000 21.11 0.00 36.83 3.49
228 229 1.334243 GCTAGGGACGTACTGTAGCAG 59.666 57.143 21.11 5.37 36.83 4.24
229 230 1.334243 CTAGGGACGTACTGTAGCAGC 59.666 57.143 0.00 0.00 34.37 5.25
230 231 1.226603 GGGACGTACTGTAGCAGCG 60.227 63.158 0.00 0.00 34.37 5.18
231 232 1.505353 GGACGTACTGTAGCAGCGT 59.495 57.895 0.00 1.50 34.15 5.07
232 233 0.729116 GGACGTACTGTAGCAGCGTA 59.271 55.000 0.00 0.00 32.32 4.42
233 234 1.530646 GGACGTACTGTAGCAGCGTAC 60.531 57.143 0.00 0.00 32.32 3.67
234 235 1.396301 GACGTACTGTAGCAGCGTACT 59.604 52.381 0.00 0.00 32.32 2.73
235 236 1.808945 ACGTACTGTAGCAGCGTACTT 59.191 47.619 6.72 0.00 34.37 2.24
236 237 2.227388 ACGTACTGTAGCAGCGTACTTT 59.773 45.455 6.72 0.00 34.37 2.66
237 238 3.240069 CGTACTGTAGCAGCGTACTTTT 58.760 45.455 6.72 0.00 34.37 2.27
238 239 3.671928 CGTACTGTAGCAGCGTACTTTTT 59.328 43.478 6.72 0.00 34.37 1.94
296 297 5.499004 AGATTGCCACACCTAAAGTTAGA 57.501 39.130 0.00 0.00 32.47 2.10
297 298 5.876357 AGATTGCCACACCTAAAGTTAGAA 58.124 37.500 0.00 0.00 32.47 2.10
405 406 4.725790 ATGTGGCAAGATTTCCTTAAGC 57.274 40.909 0.00 0.00 32.86 3.09
468 469 3.196463 CAAGCTTGGCAAAATTGTGTGA 58.804 40.909 19.14 0.00 0.00 3.58
478 479 4.624882 GCAAAATTGTGTGACAAAGTGTGA 59.375 37.500 0.00 0.00 41.96 3.58
503 504 2.373836 TGCTAGGCCTAGAACCAAACAA 59.626 45.455 38.74 11.98 35.21 2.83
507 508 1.254026 GCCTAGAACCAAACAACCCC 58.746 55.000 0.00 0.00 0.00 4.95
508 509 1.479757 GCCTAGAACCAAACAACCCCA 60.480 52.381 0.00 0.00 0.00 4.96
509 510 2.952116 CCTAGAACCAAACAACCCCAA 58.048 47.619 0.00 0.00 0.00 4.12
510 511 3.301274 CCTAGAACCAAACAACCCCAAA 58.699 45.455 0.00 0.00 0.00 3.28
513 514 3.983821 AGAACCAAACAACCCCAAAGTA 58.016 40.909 0.00 0.00 0.00 2.24
516 517 5.537295 AGAACCAAACAACCCCAAAGTATAC 59.463 40.000 0.00 0.00 0.00 1.47
517 518 4.154176 ACCAAACAACCCCAAAGTATACC 58.846 43.478 0.00 0.00 0.00 2.73
518 519 3.191791 CCAAACAACCCCAAAGTATACCG 59.808 47.826 0.00 0.00 0.00 4.02
519 520 4.073549 CAAACAACCCCAAAGTATACCGA 58.926 43.478 0.00 0.00 0.00 4.69
520 521 3.622166 ACAACCCCAAAGTATACCGAG 57.378 47.619 0.00 0.00 0.00 4.63
521 522 2.285977 CAACCCCAAAGTATACCGAGC 58.714 52.381 0.00 0.00 0.00 5.03
523 524 0.249741 CCCCAAAGTATACCGAGCGG 60.250 60.000 7.48 7.48 42.03 5.52
524 525 0.878961 CCCAAAGTATACCGAGCGGC 60.879 60.000 9.14 0.00 39.32 6.53
542 755 2.286885 GGGGGAGGGGGATGTTCA 60.287 66.667 0.00 0.00 0.00 3.18
544 757 1.296662 GGGGGAGGGGGATGTTCAAT 61.297 60.000 0.00 0.00 0.00 2.57
547 760 1.287739 GGGAGGGGGATGTTCAATTGA 59.712 52.381 3.38 3.38 0.00 2.57
548 761 2.091111 GGGAGGGGGATGTTCAATTGAT 60.091 50.000 9.40 0.00 0.00 2.57
550 763 4.033009 GGAGGGGGATGTTCAATTGATTT 58.967 43.478 9.40 0.00 0.00 2.17
552 765 5.395657 GGAGGGGGATGTTCAATTGATTTTC 60.396 44.000 9.40 6.27 0.00 2.29
573 786 8.859517 TTTTCTAATTTTTGTTTCAGTACCGG 57.140 30.769 0.00 0.00 0.00 5.28
574 787 7.804843 TTCTAATTTTTGTTTCAGTACCGGA 57.195 32.000 9.46 0.00 0.00 5.14
575 788 7.193377 TCTAATTTTTGTTTCAGTACCGGAC 57.807 36.000 9.46 1.42 0.00 4.79
576 789 5.838531 AATTTTTGTTTCAGTACCGGACA 57.161 34.783 9.46 0.00 0.00 4.02
577 790 5.838531 ATTTTTGTTTCAGTACCGGACAA 57.161 34.783 9.46 2.93 0.00 3.18
579 792 4.886247 TTTGTTTCAGTACCGGACAAAG 57.114 40.909 9.46 0.00 35.86 2.77
580 793 3.547054 TGTTTCAGTACCGGACAAAGT 57.453 42.857 9.46 0.00 0.00 2.66
581 794 3.460103 TGTTTCAGTACCGGACAAAGTC 58.540 45.455 9.46 0.00 0.00 3.01
582 795 3.118702 TGTTTCAGTACCGGACAAAGTCA 60.119 43.478 9.46 0.00 33.68 3.41
583 796 4.062991 GTTTCAGTACCGGACAAAGTCAT 58.937 43.478 9.46 0.00 33.68 3.06
584 797 3.313012 TCAGTACCGGACAAAGTCATG 57.687 47.619 9.46 0.00 33.68 3.07
585 798 1.732259 CAGTACCGGACAAAGTCATGC 59.268 52.381 9.46 0.00 33.68 4.06
586 799 1.346395 AGTACCGGACAAAGTCATGCA 59.654 47.619 9.46 0.00 33.68 3.96
587 800 2.147958 GTACCGGACAAAGTCATGCAA 58.852 47.619 9.46 0.00 33.68 4.08
589 802 3.066291 ACCGGACAAAGTCATGCAATA 57.934 42.857 9.46 0.00 33.68 1.90
590 803 3.009723 ACCGGACAAAGTCATGCAATAG 58.990 45.455 9.46 0.00 33.68 1.73
591 804 3.270027 CCGGACAAAGTCATGCAATAGA 58.730 45.455 0.00 0.00 33.68 1.98
592 805 3.689161 CCGGACAAAGTCATGCAATAGAA 59.311 43.478 0.00 0.00 33.68 2.10
593 806 4.155826 CCGGACAAAGTCATGCAATAGAAA 59.844 41.667 0.00 0.00 33.68 2.52
594 807 5.327091 CGGACAAAGTCATGCAATAGAAAG 58.673 41.667 0.00 0.00 33.68 2.62
596 809 6.092122 CGGACAAAGTCATGCAATAGAAAGTA 59.908 38.462 0.00 0.00 33.68 2.24
597 810 7.244192 GGACAAAGTCATGCAATAGAAAGTAC 58.756 38.462 0.00 0.00 33.68 2.73
601 814 9.979270 CAAAGTCATGCAATAGAAAGTACTTAG 57.021 33.333 8.92 0.00 0.00 2.18
604 817 8.972127 AGTCATGCAATAGAAAGTACTTAGAGA 58.028 33.333 8.92 0.00 0.00 3.10
615 828 9.930158 AGAAAGTACTTAGAGATATCCAGACTT 57.070 33.333 8.92 0.00 0.00 3.01
619 832 9.802039 AGTACTTAGAGATATCCAGACTTAAGG 57.198 37.037 7.53 0.00 0.00 2.69
620 833 9.016438 GTACTTAGAGATATCCAGACTTAAGGG 57.984 40.741 7.53 0.00 0.00 3.95
621 834 7.597327 ACTTAGAGATATCCAGACTTAAGGGT 58.403 38.462 7.53 0.00 0.00 4.34
622 835 7.507616 ACTTAGAGATATCCAGACTTAAGGGTG 59.492 40.741 7.53 3.48 0.00 4.61
623 836 6.031964 AGAGATATCCAGACTTAAGGGTGA 57.968 41.667 7.53 0.00 0.00 4.02
624 837 6.074648 AGAGATATCCAGACTTAAGGGTGAG 58.925 44.000 7.53 0.00 0.00 3.51
625 838 6.031964 AGATATCCAGACTTAAGGGTGAGA 57.968 41.667 7.53 4.22 0.00 3.27
626 839 6.444704 AGATATCCAGACTTAAGGGTGAGAA 58.555 40.000 7.53 0.00 0.00 2.87
627 840 6.903534 AGATATCCAGACTTAAGGGTGAGAAA 59.096 38.462 7.53 0.00 0.00 2.52
628 841 5.843019 ATCCAGACTTAAGGGTGAGAAAA 57.157 39.130 7.53 0.00 0.00 2.29
629 842 5.228945 TCCAGACTTAAGGGTGAGAAAAG 57.771 43.478 7.53 0.00 0.00 2.27
630 843 4.041691 TCCAGACTTAAGGGTGAGAAAAGG 59.958 45.833 7.53 0.00 0.00 3.11
631 844 4.041691 CCAGACTTAAGGGTGAGAAAAGGA 59.958 45.833 7.53 0.00 0.00 3.36
632 845 5.241662 CAGACTTAAGGGTGAGAAAAGGAG 58.758 45.833 7.53 0.00 0.00 3.69
633 846 5.012148 CAGACTTAAGGGTGAGAAAAGGAGA 59.988 44.000 7.53 0.00 0.00 3.71
634 847 5.607171 AGACTTAAGGGTGAGAAAAGGAGAA 59.393 40.000 7.53 0.00 0.00 2.87
635 848 6.101296 AGACTTAAGGGTGAGAAAAGGAGAAA 59.899 38.462 7.53 0.00 0.00 2.52
636 849 6.669631 ACTTAAGGGTGAGAAAAGGAGAAAA 58.330 36.000 7.53 0.00 0.00 2.29
637 850 7.123383 ACTTAAGGGTGAGAAAAGGAGAAAAA 58.877 34.615 7.53 0.00 0.00 1.94
723 936 6.860790 TTTTAAGAAACAAAGGTTGGGTCT 57.139 33.333 0.00 0.00 37.30 3.85
724 937 7.957992 TTTTAAGAAACAAAGGTTGGGTCTA 57.042 32.000 0.00 0.00 37.30 2.59
727 940 6.860790 AAGAAACAAAGGTTGGGTCTAAAA 57.139 33.333 0.00 0.00 37.30 1.52
729 942 5.717654 AGAAACAAAGGTTGGGTCTAAAACA 59.282 36.000 0.00 0.00 37.30 2.83
732 945 5.020795 ACAAAGGTTGGGTCTAAAACAGTT 58.979 37.500 0.00 0.00 34.12 3.16
734 947 5.592104 AAGGTTGGGTCTAAAACAGTTTG 57.408 39.130 0.00 0.00 0.00 2.93
735 948 4.862371 AGGTTGGGTCTAAAACAGTTTGA 58.138 39.130 0.00 0.00 0.00 2.69
736 949 5.265989 AGGTTGGGTCTAAAACAGTTTGAA 58.734 37.500 0.00 0.00 0.00 2.69
737 950 5.126545 AGGTTGGGTCTAAAACAGTTTGAAC 59.873 40.000 0.00 0.00 0.00 3.18
738 951 5.105675 GGTTGGGTCTAAAACAGTTTGAACA 60.106 40.000 0.00 0.00 0.00 3.18
739 952 6.391537 GTTGGGTCTAAAACAGTTTGAACAA 58.608 36.000 0.00 1.03 0.00 2.83
740 953 6.591750 TGGGTCTAAAACAGTTTGAACAAA 57.408 33.333 0.00 0.00 0.00 2.83
742 955 8.294954 TGGGTCTAAAACAGTTTGAACAAATA 57.705 30.769 0.00 0.00 32.36 1.40
743 956 8.750298 TGGGTCTAAAACAGTTTGAACAAATAA 58.250 29.630 0.00 0.00 32.36 1.40
744 957 9.244799 GGGTCTAAAACAGTTTGAACAAATAAG 57.755 33.333 0.00 0.56 32.36 1.73
753 966 9.097257 ACAGTTTGAACAAATAAGAAATTGGTG 57.903 29.630 3.34 0.00 32.36 4.17
755 968 9.097257 AGTTTGAACAAATAAGAAATTGGTGTG 57.903 29.630 3.34 0.00 32.36 3.82
756 969 7.475771 TTGAACAAATAAGAAATTGGTGTGC 57.524 32.000 0.00 0.00 0.00 4.57
757 970 6.815089 TGAACAAATAAGAAATTGGTGTGCT 58.185 32.000 0.00 0.00 0.00 4.40
759 972 8.584157 TGAACAAATAAGAAATTGGTGTGCTAT 58.416 29.630 0.00 0.00 0.00 2.97
761 974 8.986477 ACAAATAAGAAATTGGTGTGCTATTC 57.014 30.769 0.00 0.00 0.00 1.75
763 976 9.079833 CAAATAAGAAATTGGTGTGCTATTCTG 57.920 33.333 0.00 0.00 0.00 3.02
764 977 8.579850 AATAAGAAATTGGTGTGCTATTCTGA 57.420 30.769 0.00 0.00 0.00 3.27
765 978 8.757982 ATAAGAAATTGGTGTGCTATTCTGAT 57.242 30.769 0.00 0.00 0.00 2.90
766 979 7.472334 AAGAAATTGGTGTGCTATTCTGATT 57.528 32.000 0.00 0.00 0.00 2.57
767 980 7.472334 AGAAATTGGTGTGCTATTCTGATTT 57.528 32.000 0.00 0.00 0.00 2.17
768 981 7.318141 AGAAATTGGTGTGCTATTCTGATTTG 58.682 34.615 0.00 0.00 0.00 2.32
769 982 6.839124 AATTGGTGTGCTATTCTGATTTGA 57.161 33.333 0.00 0.00 0.00 2.69
770 983 7.414222 AATTGGTGTGCTATTCTGATTTGAT 57.586 32.000 0.00 0.00 0.00 2.57
771 984 5.823209 TGGTGTGCTATTCTGATTTGATG 57.177 39.130 0.00 0.00 0.00 3.07
772 985 4.096833 TGGTGTGCTATTCTGATTTGATGC 59.903 41.667 0.00 0.00 0.00 3.91
773 986 4.277258 GTGTGCTATTCTGATTTGATGCG 58.723 43.478 0.00 0.00 0.00 4.73
774 987 4.034394 GTGTGCTATTCTGATTTGATGCGA 59.966 41.667 0.00 0.00 0.00 5.10
775 988 4.271776 TGTGCTATTCTGATTTGATGCGAG 59.728 41.667 0.00 0.00 0.00 5.03
776 989 4.272018 GTGCTATTCTGATTTGATGCGAGT 59.728 41.667 0.00 0.00 0.00 4.18
777 990 5.463392 GTGCTATTCTGATTTGATGCGAGTA 59.537 40.000 0.00 0.00 0.00 2.59
778 991 6.018751 GTGCTATTCTGATTTGATGCGAGTAA 60.019 38.462 0.00 0.00 0.00 2.24
779 992 6.018751 TGCTATTCTGATTTGATGCGAGTAAC 60.019 38.462 0.00 0.00 0.00 2.50
780 993 6.018751 GCTATTCTGATTTGATGCGAGTAACA 60.019 38.462 0.00 0.00 0.00 2.41
781 994 6.741992 ATTCTGATTTGATGCGAGTAACAA 57.258 33.333 0.00 0.00 0.00 2.83
782 995 5.784750 TCTGATTTGATGCGAGTAACAAG 57.215 39.130 0.00 0.00 0.00 3.16
783 996 5.237815 TCTGATTTGATGCGAGTAACAAGT 58.762 37.500 0.00 0.00 0.00 3.16
784 997 6.394809 TCTGATTTGATGCGAGTAACAAGTA 58.605 36.000 0.00 0.00 0.00 2.24
785 998 6.871492 TCTGATTTGATGCGAGTAACAAGTAA 59.129 34.615 0.00 0.00 0.00 2.24
786 999 7.549134 TCTGATTTGATGCGAGTAACAAGTAAT 59.451 33.333 0.00 0.00 0.00 1.89
787 1000 7.684670 TGATTTGATGCGAGTAACAAGTAATC 58.315 34.615 0.00 0.00 0.00 1.75
788 1001 7.549134 TGATTTGATGCGAGTAACAAGTAATCT 59.451 33.333 0.00 0.00 0.00 2.40
789 1002 7.667043 TTTGATGCGAGTAACAAGTAATCTT 57.333 32.000 0.00 0.00 0.00 2.40
790 1003 6.887376 TGATGCGAGTAACAAGTAATCTTC 57.113 37.500 0.00 0.00 0.00 2.87
791 1004 5.810587 TGATGCGAGTAACAAGTAATCTTCC 59.189 40.000 0.00 0.00 0.00 3.46
792 1005 5.142061 TGCGAGTAACAAGTAATCTTCCA 57.858 39.130 0.00 0.00 0.00 3.53
793 1006 5.730550 TGCGAGTAACAAGTAATCTTCCAT 58.269 37.500 0.00 0.00 0.00 3.41
794 1007 5.580691 TGCGAGTAACAAGTAATCTTCCATG 59.419 40.000 0.00 0.00 0.00 3.66
795 1008 5.810587 GCGAGTAACAAGTAATCTTCCATGA 59.189 40.000 0.00 0.00 0.00 3.07
796 1009 6.019479 GCGAGTAACAAGTAATCTTCCATGAG 60.019 42.308 0.00 0.00 0.00 2.90
797 1010 6.019479 CGAGTAACAAGTAATCTTCCATGAGC 60.019 42.308 0.00 0.00 0.00 4.26
798 1011 6.951971 AGTAACAAGTAATCTTCCATGAGCT 58.048 36.000 0.00 0.00 0.00 4.09
799 1012 7.044798 AGTAACAAGTAATCTTCCATGAGCTC 58.955 38.462 6.82 6.82 0.00 4.09
800 1013 4.775236 ACAAGTAATCTTCCATGAGCTCC 58.225 43.478 12.15 0.00 0.00 4.70
801 1014 4.472833 ACAAGTAATCTTCCATGAGCTCCT 59.527 41.667 12.15 0.00 0.00 3.69
802 1015 5.663106 ACAAGTAATCTTCCATGAGCTCCTA 59.337 40.000 12.15 0.00 0.00 2.94
803 1016 6.328672 ACAAGTAATCTTCCATGAGCTCCTAT 59.671 38.462 12.15 0.00 0.00 2.57
804 1017 6.357579 AGTAATCTTCCATGAGCTCCTATG 57.642 41.667 12.15 9.15 0.00 2.23
805 1018 6.080682 AGTAATCTTCCATGAGCTCCTATGA 58.919 40.000 12.15 2.62 0.00 2.15
806 1019 5.486735 AATCTTCCATGAGCTCCTATGAG 57.513 43.478 12.15 4.10 41.84 2.90
807 1020 4.190370 TCTTCCATGAGCTCCTATGAGA 57.810 45.455 12.15 6.34 41.42 3.27
808 1021 4.550669 TCTTCCATGAGCTCCTATGAGAA 58.449 43.478 12.15 12.63 41.42 2.87
809 1022 4.964897 TCTTCCATGAGCTCCTATGAGAAA 59.035 41.667 12.15 4.30 41.42 2.52
810 1023 5.426509 TCTTCCATGAGCTCCTATGAGAAAA 59.573 40.000 12.15 0.22 41.42 2.29
811 1024 5.901413 TCCATGAGCTCCTATGAGAAAAT 57.099 39.130 12.15 0.00 41.42 1.82
812 1025 7.290948 TCTTCCATGAGCTCCTATGAGAAAATA 59.709 37.037 12.15 2.41 41.42 1.40
813 1026 7.002250 TCCATGAGCTCCTATGAGAAAATAG 57.998 40.000 12.15 0.00 41.42 1.73
911 1124 8.888579 ATTCTGTTATACATAAAAGTCTCCCG 57.111 34.615 0.24 0.00 31.08 5.14
912 1125 7.414222 TCTGTTATACATAAAAGTCTCCCGT 57.586 36.000 0.24 0.00 31.08 5.28
913 1126 7.262772 TCTGTTATACATAAAAGTCTCCCGTG 58.737 38.462 0.24 0.00 31.08 4.94
914 1127 5.813672 TGTTATACATAAAAGTCTCCCGTGC 59.186 40.000 0.00 0.00 0.00 5.34
915 1128 2.851263 ACATAAAAGTCTCCCGTGCA 57.149 45.000 0.00 0.00 0.00 4.57
916 1129 3.134574 ACATAAAAGTCTCCCGTGCAA 57.865 42.857 0.00 0.00 0.00 4.08
917 1130 3.482436 ACATAAAAGTCTCCCGTGCAAA 58.518 40.909 0.00 0.00 0.00 3.68
918 1131 3.502211 ACATAAAAGTCTCCCGTGCAAAG 59.498 43.478 0.00 0.00 0.00 2.77
919 1132 0.668535 AAAAGTCTCCCGTGCAAAGC 59.331 50.000 0.00 0.00 0.00 3.51
920 1133 0.465460 AAAGTCTCCCGTGCAAAGCA 60.465 50.000 0.00 0.00 35.60 3.91
932 1145 2.993545 TGCAAAGCACGTACAAATGAC 58.006 42.857 0.00 0.00 31.71 3.06
933 1146 2.616376 TGCAAAGCACGTACAAATGACT 59.384 40.909 0.00 0.00 31.71 3.41
934 1147 3.810386 TGCAAAGCACGTACAAATGACTA 59.190 39.130 0.00 0.00 31.71 2.59
935 1148 4.084066 TGCAAAGCACGTACAAATGACTAG 60.084 41.667 0.00 0.00 31.71 2.57
1243 1719 4.835891 ACCTCTACCGGGAGCGGG 62.836 72.222 26.63 22.82 32.43 6.13
1501 1977 4.013728 TGAAAAAGTATGTCCCATTCCCG 58.986 43.478 0.00 0.00 0.00 5.14
1510 1986 2.125269 CCATTCCCGTCCACCGTC 60.125 66.667 0.00 0.00 33.66 4.79
1519 1995 1.749634 CCGTCCACCGTCTTCTTATCT 59.250 52.381 0.00 0.00 33.66 1.98
1555 2044 4.681025 CACCACACAATTGATACAGTTTGC 59.319 41.667 13.59 0.00 0.00 3.68
1605 2151 1.931841 GTAAGGTTTTCGCGGAGATCC 59.068 52.381 6.13 0.87 0.00 3.36
1865 3220 1.737008 GGCGAACTCTGACCCGTTC 60.737 63.158 0.00 0.00 36.92 3.95
1982 3487 3.130340 GTCCCGATGTTGGTTATGCAAAT 59.870 43.478 0.00 0.00 0.00 2.32
1986 3491 5.273170 CCGATGTTGGTTATGCAAATACAG 58.727 41.667 0.00 0.00 0.00 2.74
1995 3500 7.534282 TGGTTATGCAAATACAGTACAACATG 58.466 34.615 0.00 0.00 0.00 3.21
2107 3613 1.062886 TCTGGAGATGGGAATCCGAGT 60.063 52.381 0.00 0.00 38.52 4.18
2259 3768 1.154150 CACCGTAGTCCGTCGAACC 60.154 63.158 0.00 0.00 33.66 3.62
2260 3769 2.335712 ACCGTAGTCCGTCGAACCC 61.336 63.158 0.00 0.00 33.66 4.11
2266 3775 4.047059 TCCGTCGAACCCACGAGC 62.047 66.667 0.00 0.00 42.88 5.03
2378 3887 2.108566 CAGAGATCCTGCGGCTGG 59.891 66.667 18.81 18.81 35.89 4.85
2379 3888 3.859414 AGAGATCCTGCGGCTGGC 61.859 66.667 19.91 8.06 43.96 4.85
2500 4009 3.003173 CACAGGGCGGAGGAGGAA 61.003 66.667 0.00 0.00 0.00 3.36
2852 4520 3.940852 TCCACAACTGATTTCATCCGATG 59.059 43.478 1.55 1.55 0.00 3.84
2877 4548 4.584743 ACTACCAGAATACGAGATCATGCA 59.415 41.667 0.00 0.00 0.00 3.96
2895 4566 7.089770 TCATGCAGTTTGTTACTTTTGTGTA 57.910 32.000 0.00 0.00 33.85 2.90
2898 4569 8.651588 CATGCAGTTTGTTACTTTTGTGTAAAA 58.348 29.630 0.00 0.00 33.85 1.52
2899 4570 8.589335 TGCAGTTTGTTACTTTTGTGTAAAAA 57.411 26.923 0.00 0.00 35.50 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 3.410516 CGAACGGCGCATGTGACA 61.411 61.111 13.61 0.00 0.00 3.58
24 25 1.721487 GGATTGCATGGTCGAACGG 59.279 57.895 0.00 0.00 0.00 4.44
29 30 1.518352 TCGTCGGATTGCATGGTCG 60.518 57.895 0.00 0.00 0.00 4.79
32 33 2.180204 GGGTCGTCGGATTGCATGG 61.180 63.158 0.00 0.00 0.00 3.66
35 36 0.756294 ATATGGGTCGTCGGATTGCA 59.244 50.000 0.00 0.00 0.00 4.08
66 67 4.796495 GGTGGTGGTCCCCATCGC 62.796 72.222 0.00 0.00 43.73 4.58
69 70 1.925455 CAGAGGTGGTGGTCCCCAT 60.925 63.158 2.76 0.00 36.74 4.00
126 127 3.449018 ACCACTTCACCACATCTAGCTAG 59.551 47.826 15.01 15.01 0.00 3.42
141 142 3.057734 CTCTTGTCACCGTAACCACTTC 58.942 50.000 0.00 0.00 0.00 3.01
152 153 1.968493 TGGAGTACCACTCTTGTCACC 59.032 52.381 6.30 0.00 44.46 4.02
164 165 5.046807 TGTTTCTAGCCTTTACTGGAGTACC 60.047 44.000 0.00 0.00 0.00 3.34
165 166 6.034161 TGTTTCTAGCCTTTACTGGAGTAC 57.966 41.667 0.00 0.00 0.00 2.73
188 189 2.289320 GCCTATCCGCACATCTGAAGAT 60.289 50.000 0.00 0.00 34.56 2.40
189 190 1.069204 GCCTATCCGCACATCTGAAGA 59.931 52.381 0.00 0.00 0.00 2.87
190 191 1.069823 AGCCTATCCGCACATCTGAAG 59.930 52.381 0.00 0.00 0.00 3.02
191 192 1.123077 AGCCTATCCGCACATCTGAA 58.877 50.000 0.00 0.00 0.00 3.02
192 193 1.889170 CTAGCCTATCCGCACATCTGA 59.111 52.381 0.00 0.00 0.00 3.27
193 194 1.067283 CCTAGCCTATCCGCACATCTG 60.067 57.143 0.00 0.00 0.00 2.90
194 195 1.261480 CCTAGCCTATCCGCACATCT 58.739 55.000 0.00 0.00 0.00 2.90
195 196 0.247736 CCCTAGCCTATCCGCACATC 59.752 60.000 0.00 0.00 0.00 3.06
196 197 0.178932 TCCCTAGCCTATCCGCACAT 60.179 55.000 0.00 0.00 0.00 3.21
197 198 1.113517 GTCCCTAGCCTATCCGCACA 61.114 60.000 0.00 0.00 0.00 4.57
198 199 1.666580 GTCCCTAGCCTATCCGCAC 59.333 63.158 0.00 0.00 0.00 5.34
199 200 1.901948 CGTCCCTAGCCTATCCGCA 60.902 63.158 0.00 0.00 0.00 5.69
200 201 0.607489 TACGTCCCTAGCCTATCCGC 60.607 60.000 0.00 0.00 0.00 5.54
201 202 1.163554 GTACGTCCCTAGCCTATCCG 58.836 60.000 0.00 0.00 0.00 4.18
202 203 2.161030 CAGTACGTCCCTAGCCTATCC 58.839 57.143 0.00 0.00 0.00 2.59
203 204 2.861274 ACAGTACGTCCCTAGCCTATC 58.139 52.381 0.00 0.00 0.00 2.08
204 205 3.810033 GCTACAGTACGTCCCTAGCCTAT 60.810 52.174 0.00 0.00 0.00 2.57
205 206 2.486191 GCTACAGTACGTCCCTAGCCTA 60.486 54.545 0.00 0.00 0.00 3.93
206 207 1.749983 GCTACAGTACGTCCCTAGCCT 60.750 57.143 0.00 0.00 0.00 4.58
207 208 0.667453 GCTACAGTACGTCCCTAGCC 59.333 60.000 0.00 0.00 0.00 3.93
208 209 1.334243 CTGCTACAGTACGTCCCTAGC 59.666 57.143 0.00 0.00 0.00 3.42
209 210 1.334243 GCTGCTACAGTACGTCCCTAG 59.666 57.143 0.00 0.00 33.43 3.02
210 211 1.386533 GCTGCTACAGTACGTCCCTA 58.613 55.000 0.00 0.00 33.43 3.53
211 212 1.654954 CGCTGCTACAGTACGTCCCT 61.655 60.000 0.00 0.00 33.43 4.20
212 213 1.226603 CGCTGCTACAGTACGTCCC 60.227 63.158 0.00 0.00 33.43 4.46
213 214 0.729116 TACGCTGCTACAGTACGTCC 59.271 55.000 0.00 0.00 33.70 4.79
214 215 1.396301 AGTACGCTGCTACAGTACGTC 59.604 52.381 0.00 0.00 43.76 4.34
215 216 1.446907 AGTACGCTGCTACAGTACGT 58.553 50.000 9.02 0.00 43.76 3.57
216 217 2.539346 AAGTACGCTGCTACAGTACG 57.461 50.000 9.02 0.00 43.76 3.67
236 237 3.519913 ACAAACCAAACAGGCCCTAAAAA 59.480 39.130 0.00 0.00 43.14 1.94
237 238 3.108376 ACAAACCAAACAGGCCCTAAAA 58.892 40.909 0.00 0.00 43.14 1.52
238 239 2.432510 CACAAACCAAACAGGCCCTAAA 59.567 45.455 0.00 0.00 43.14 1.85
397 398 2.622942 CACAAGTTGGCAAGCTTAAGGA 59.377 45.455 7.96 0.00 0.00 3.36
462 463 3.427368 GCATTGTCACACTTTGTCACACA 60.427 43.478 0.00 0.00 0.00 3.72
468 469 2.554032 GCCTAGCATTGTCACACTTTGT 59.446 45.455 0.00 0.00 0.00 2.83
478 479 2.196595 TGGTTCTAGGCCTAGCATTGT 58.803 47.619 31.76 0.00 33.32 2.71
503 504 0.462789 CGCTCGGTATACTTTGGGGT 59.537 55.000 2.25 0.00 0.00 4.95
507 508 2.213483 CGCCGCTCGGTATACTTTG 58.787 57.895 10.24 0.00 37.65 2.77
508 509 4.724022 CGCCGCTCGGTATACTTT 57.276 55.556 10.24 0.00 37.65 2.66
524 525 3.489513 GAACATCCCCCTCCCCCG 61.490 72.222 0.00 0.00 0.00 5.73
527 528 1.287739 TCAATTGAACATCCCCCTCCC 59.712 52.381 5.45 0.00 0.00 4.30
528 529 2.826674 TCAATTGAACATCCCCCTCC 57.173 50.000 5.45 0.00 0.00 4.30
529 530 5.423290 AGAAAATCAATTGAACATCCCCCTC 59.577 40.000 13.09 0.10 0.00 4.30
530 531 5.344566 AGAAAATCAATTGAACATCCCCCT 58.655 37.500 13.09 0.00 0.00 4.79
531 532 5.682234 AGAAAATCAATTGAACATCCCCC 57.318 39.130 13.09 0.00 0.00 5.40
532 533 9.671279 AAATTAGAAAATCAATTGAACATCCCC 57.329 29.630 13.09 0.00 0.00 4.81
547 760 9.471084 CCGGTACTGAAACAAAAATTAGAAAAT 57.529 29.630 2.31 0.00 0.00 1.82
548 761 8.684520 TCCGGTACTGAAACAAAAATTAGAAAA 58.315 29.630 2.31 0.00 0.00 2.29
550 763 7.282675 TGTCCGGTACTGAAACAAAAATTAGAA 59.717 33.333 2.31 0.00 0.00 2.10
552 765 6.961576 TGTCCGGTACTGAAACAAAAATTAG 58.038 36.000 2.31 0.00 0.00 1.73
562 775 3.823281 TGACTTTGTCCGGTACTGAAA 57.177 42.857 2.31 0.00 0.00 2.69
565 778 1.732259 GCATGACTTTGTCCGGTACTG 59.268 52.381 0.00 0.00 0.00 2.74
566 779 1.346395 TGCATGACTTTGTCCGGTACT 59.654 47.619 0.00 0.00 0.00 2.73
567 780 1.803334 TGCATGACTTTGTCCGGTAC 58.197 50.000 0.00 0.00 0.00 3.34
568 781 2.552599 TTGCATGACTTTGTCCGGTA 57.447 45.000 0.00 0.00 0.00 4.02
569 782 1.909700 ATTGCATGACTTTGTCCGGT 58.090 45.000 0.00 0.00 0.00 5.28
570 783 3.270027 TCTATTGCATGACTTTGTCCGG 58.730 45.455 0.00 0.00 0.00 5.14
571 784 4.944962 TTCTATTGCATGACTTTGTCCG 57.055 40.909 0.00 0.00 0.00 4.79
573 786 8.034058 AGTACTTTCTATTGCATGACTTTGTC 57.966 34.615 0.00 0.00 0.00 3.18
574 787 7.986085 AGTACTTTCTATTGCATGACTTTGT 57.014 32.000 0.00 0.00 0.00 2.83
575 788 9.979270 CTAAGTACTTTCTATTGCATGACTTTG 57.021 33.333 14.49 0.00 0.00 2.77
576 789 9.944376 TCTAAGTACTTTCTATTGCATGACTTT 57.056 29.630 14.49 0.00 0.00 2.66
577 790 9.593134 CTCTAAGTACTTTCTATTGCATGACTT 57.407 33.333 14.49 0.00 0.00 3.01
579 792 9.757227 ATCTCTAAGTACTTTCTATTGCATGAC 57.243 33.333 14.49 0.00 0.00 3.06
589 802 9.930158 AAGTCTGGATATCTCTAAGTACTTTCT 57.070 33.333 14.49 0.00 0.00 2.52
593 806 9.802039 CCTTAAGTCTGGATATCTCTAAGTACT 57.198 37.037 2.05 0.00 0.00 2.73
594 807 9.016438 CCCTTAAGTCTGGATATCTCTAAGTAC 57.984 40.741 2.05 0.00 0.00 2.73
596 809 7.507616 CACCCTTAAGTCTGGATATCTCTAAGT 59.492 40.741 2.05 0.00 0.00 2.24
597 810 7.726291 TCACCCTTAAGTCTGGATATCTCTAAG 59.274 40.741 2.05 2.07 0.00 2.18
601 814 6.071984 TCTCACCCTTAAGTCTGGATATCTC 58.928 44.000 2.05 0.00 0.00 2.75
604 817 7.366011 CCTTTTCTCACCCTTAAGTCTGGATAT 60.366 40.741 0.97 0.00 0.00 1.63
606 819 5.280727 CCTTTTCTCACCCTTAAGTCTGGAT 60.281 44.000 0.97 0.00 0.00 3.41
609 822 5.012148 TCTCCTTTTCTCACCCTTAAGTCTG 59.988 44.000 0.97 0.00 0.00 3.51
610 823 5.155905 TCTCCTTTTCTCACCCTTAAGTCT 58.844 41.667 0.97 0.00 0.00 3.24
611 824 5.485209 TCTCCTTTTCTCACCCTTAAGTC 57.515 43.478 0.97 0.00 0.00 3.01
612 825 5.906772 TTCTCCTTTTCTCACCCTTAAGT 57.093 39.130 0.97 0.00 0.00 2.24
613 826 7.582667 TTTTTCTCCTTTTCTCACCCTTAAG 57.417 36.000 0.00 0.00 0.00 1.85
699 912 7.247456 AGACCCAACCTTTGTTTCTTAAAAA 57.753 32.000 0.00 0.00 30.42 1.94
700 913 6.860790 AGACCCAACCTTTGTTTCTTAAAA 57.139 33.333 0.00 0.00 30.42 1.52
701 914 7.957992 TTAGACCCAACCTTTGTTTCTTAAA 57.042 32.000 0.00 0.00 30.42 1.52
702 915 7.957992 TTTAGACCCAACCTTTGTTTCTTAA 57.042 32.000 0.00 0.00 30.42 1.85
703 916 7.396623 TGTTTTAGACCCAACCTTTGTTTCTTA 59.603 33.333 0.00 0.00 30.42 2.10
704 917 6.211785 TGTTTTAGACCCAACCTTTGTTTCTT 59.788 34.615 0.00 0.00 30.42 2.52
706 919 5.968254 TGTTTTAGACCCAACCTTTGTTTC 58.032 37.500 0.00 0.00 30.42 2.78
707 920 5.482526 ACTGTTTTAGACCCAACCTTTGTTT 59.517 36.000 0.00 0.00 30.42 2.83
708 921 5.020795 ACTGTTTTAGACCCAACCTTTGTT 58.979 37.500 0.00 0.00 34.14 2.83
709 922 4.606210 ACTGTTTTAGACCCAACCTTTGT 58.394 39.130 0.00 0.00 0.00 2.83
710 923 5.592104 AACTGTTTTAGACCCAACCTTTG 57.408 39.130 0.00 0.00 0.00 2.77
711 924 5.717654 TCAAACTGTTTTAGACCCAACCTTT 59.282 36.000 2.41 0.00 0.00 3.11
712 925 5.265989 TCAAACTGTTTTAGACCCAACCTT 58.734 37.500 2.41 0.00 0.00 3.50
714 927 5.105675 TGTTCAAACTGTTTTAGACCCAACC 60.106 40.000 2.41 0.00 0.00 3.77
715 928 5.956642 TGTTCAAACTGTTTTAGACCCAAC 58.043 37.500 2.41 0.12 0.00 3.77
716 929 6.591750 TTGTTCAAACTGTTTTAGACCCAA 57.408 33.333 2.41 2.83 0.00 4.12
717 930 6.591750 TTTGTTCAAACTGTTTTAGACCCA 57.408 33.333 2.41 0.00 0.00 4.51
727 940 9.097257 CACCAATTTCTTATTTGTTCAAACTGT 57.903 29.630 0.00 0.00 0.00 3.55
729 942 9.097257 CACACCAATTTCTTATTTGTTCAAACT 57.903 29.630 0.00 0.00 0.00 2.66
732 945 7.271511 AGCACACCAATTTCTTATTTGTTCAA 58.728 30.769 0.00 0.00 0.00 2.69
734 947 8.986477 ATAGCACACCAATTTCTTATTTGTTC 57.014 30.769 0.00 0.00 0.00 3.18
735 948 9.423061 GAATAGCACACCAATTTCTTATTTGTT 57.577 29.630 0.00 0.00 0.00 2.83
736 949 8.806146 AGAATAGCACACCAATTTCTTATTTGT 58.194 29.630 0.00 0.00 0.00 2.83
737 950 9.079833 CAGAATAGCACACCAATTTCTTATTTG 57.920 33.333 0.00 0.00 0.00 2.32
738 951 9.023962 TCAGAATAGCACACCAATTTCTTATTT 57.976 29.630 0.00 0.00 0.00 1.40
739 952 8.579850 TCAGAATAGCACACCAATTTCTTATT 57.420 30.769 0.00 0.00 0.00 1.40
740 953 8.757982 ATCAGAATAGCACACCAATTTCTTAT 57.242 30.769 0.00 0.00 0.00 1.73
742 955 7.472334 AATCAGAATAGCACACCAATTTCTT 57.528 32.000 0.00 0.00 0.00 2.52
743 956 7.177216 TCAAATCAGAATAGCACACCAATTTCT 59.823 33.333 0.00 0.00 0.00 2.52
744 957 7.315142 TCAAATCAGAATAGCACACCAATTTC 58.685 34.615 0.00 0.00 0.00 2.17
745 958 7.230849 TCAAATCAGAATAGCACACCAATTT 57.769 32.000 0.00 0.00 0.00 1.82
746 959 6.839124 TCAAATCAGAATAGCACACCAATT 57.161 33.333 0.00 0.00 0.00 2.32
747 960 6.682113 GCATCAAATCAGAATAGCACACCAAT 60.682 38.462 0.00 0.00 0.00 3.16
748 961 5.393352 GCATCAAATCAGAATAGCACACCAA 60.393 40.000 0.00 0.00 0.00 3.67
749 962 4.096833 GCATCAAATCAGAATAGCACACCA 59.903 41.667 0.00 0.00 0.00 4.17
750 963 4.604976 GCATCAAATCAGAATAGCACACC 58.395 43.478 0.00 0.00 0.00 4.16
751 964 4.034394 TCGCATCAAATCAGAATAGCACAC 59.966 41.667 0.00 0.00 0.00 3.82
753 966 4.272018 ACTCGCATCAAATCAGAATAGCAC 59.728 41.667 0.00 0.00 0.00 4.40
755 968 6.018751 TGTTACTCGCATCAAATCAGAATAGC 60.019 38.462 0.00 0.00 0.00 2.97
756 969 7.468922 TGTTACTCGCATCAAATCAGAATAG 57.531 36.000 0.00 0.00 0.00 1.73
757 970 7.549134 ACTTGTTACTCGCATCAAATCAGAATA 59.451 33.333 0.00 0.00 0.00 1.75
759 972 5.700832 ACTTGTTACTCGCATCAAATCAGAA 59.299 36.000 0.00 0.00 0.00 3.02
761 974 5.536554 ACTTGTTACTCGCATCAAATCAG 57.463 39.130 0.00 0.00 0.00 2.90
763 976 7.910304 AGATTACTTGTTACTCGCATCAAATC 58.090 34.615 0.00 0.00 0.00 2.17
764 977 7.849804 AGATTACTTGTTACTCGCATCAAAT 57.150 32.000 0.00 0.00 0.00 2.32
765 978 7.148474 GGAAGATTACTTGTTACTCGCATCAAA 60.148 37.037 0.00 0.00 36.39 2.69
766 979 6.312918 GGAAGATTACTTGTTACTCGCATCAA 59.687 38.462 0.00 0.00 36.39 2.57
767 980 5.810587 GGAAGATTACTTGTTACTCGCATCA 59.189 40.000 0.00 0.00 36.39 3.07
768 981 5.810587 TGGAAGATTACTTGTTACTCGCATC 59.189 40.000 0.00 0.00 36.39 3.91
769 982 5.730550 TGGAAGATTACTTGTTACTCGCAT 58.269 37.500 0.00 0.00 36.39 4.73
770 983 5.142061 TGGAAGATTACTTGTTACTCGCA 57.858 39.130 0.00 0.00 36.39 5.10
771 984 5.810587 TCATGGAAGATTACTTGTTACTCGC 59.189 40.000 0.00 0.00 36.39 5.03
772 985 6.019479 GCTCATGGAAGATTACTTGTTACTCG 60.019 42.308 0.00 0.00 36.39 4.18
773 986 7.044798 AGCTCATGGAAGATTACTTGTTACTC 58.955 38.462 0.00 0.00 36.39 2.59
774 987 6.951971 AGCTCATGGAAGATTACTTGTTACT 58.048 36.000 0.00 0.00 36.39 2.24
775 988 6.258947 GGAGCTCATGGAAGATTACTTGTTAC 59.741 42.308 17.19 0.00 36.39 2.50
776 989 6.156949 AGGAGCTCATGGAAGATTACTTGTTA 59.843 38.462 17.19 0.00 36.39 2.41
777 990 5.045286 AGGAGCTCATGGAAGATTACTTGTT 60.045 40.000 17.19 0.00 36.39 2.83
778 991 4.472833 AGGAGCTCATGGAAGATTACTTGT 59.527 41.667 17.19 0.00 36.39 3.16
779 992 5.033589 AGGAGCTCATGGAAGATTACTTG 57.966 43.478 17.19 0.00 36.39 3.16
780 993 6.556495 TCATAGGAGCTCATGGAAGATTACTT 59.444 38.462 17.19 0.00 39.24 2.24
781 994 6.080682 TCATAGGAGCTCATGGAAGATTACT 58.919 40.000 17.19 0.93 0.00 2.24
782 995 6.210385 TCTCATAGGAGCTCATGGAAGATTAC 59.790 42.308 17.19 0.00 41.13 1.89
783 996 6.318112 TCTCATAGGAGCTCATGGAAGATTA 58.682 40.000 17.19 0.00 41.13 1.75
784 997 5.153675 TCTCATAGGAGCTCATGGAAGATT 58.846 41.667 17.19 0.00 41.13 2.40
785 998 4.749820 TCTCATAGGAGCTCATGGAAGAT 58.250 43.478 17.19 0.00 41.13 2.40
786 999 4.190370 TCTCATAGGAGCTCATGGAAGA 57.810 45.455 17.19 9.88 41.13 2.87
787 1000 4.952071 TTCTCATAGGAGCTCATGGAAG 57.048 45.455 17.19 7.64 41.13 3.46
788 1001 5.698741 TTTTCTCATAGGAGCTCATGGAA 57.301 39.130 17.19 13.11 41.13 3.53
789 1002 5.901413 ATTTTCTCATAGGAGCTCATGGA 57.099 39.130 17.19 10.03 41.13 3.41
790 1003 6.013898 TCCTATTTTCTCATAGGAGCTCATGG 60.014 42.308 17.19 5.78 46.83 3.66
791 1004 7.002250 TCCTATTTTCTCATAGGAGCTCATG 57.998 40.000 17.19 11.75 46.83 3.07
885 1098 9.976511 CGGGAGACTTTTATGTATAACAGAATA 57.023 33.333 5.14 0.00 28.67 1.75
886 1099 8.483758 ACGGGAGACTTTTATGTATAACAGAAT 58.516 33.333 5.14 0.00 28.67 2.40
887 1100 7.762615 CACGGGAGACTTTTATGTATAACAGAA 59.237 37.037 5.14 0.00 0.00 3.02
888 1101 7.262772 CACGGGAGACTTTTATGTATAACAGA 58.737 38.462 5.14 0.00 0.00 3.41
889 1102 6.018994 GCACGGGAGACTTTTATGTATAACAG 60.019 42.308 0.00 0.00 0.00 3.16
890 1103 5.813672 GCACGGGAGACTTTTATGTATAACA 59.186 40.000 0.00 0.00 0.00 2.41
891 1104 5.813672 TGCACGGGAGACTTTTATGTATAAC 59.186 40.000 0.00 0.00 0.00 1.89
892 1105 5.979993 TGCACGGGAGACTTTTATGTATAA 58.020 37.500 0.00 0.00 0.00 0.98
893 1106 5.601583 TGCACGGGAGACTTTTATGTATA 57.398 39.130 0.00 0.00 0.00 1.47
894 1107 4.481368 TGCACGGGAGACTTTTATGTAT 57.519 40.909 0.00 0.00 0.00 2.29
895 1108 3.965379 TGCACGGGAGACTTTTATGTA 57.035 42.857 0.00 0.00 0.00 2.29
896 1109 2.851263 TGCACGGGAGACTTTTATGT 57.149 45.000 0.00 0.00 0.00 2.29
897 1110 3.670627 GCTTTGCACGGGAGACTTTTATG 60.671 47.826 0.00 0.00 0.00 1.90
898 1111 2.488153 GCTTTGCACGGGAGACTTTTAT 59.512 45.455 0.00 0.00 0.00 1.40
899 1112 1.877443 GCTTTGCACGGGAGACTTTTA 59.123 47.619 0.00 0.00 0.00 1.52
900 1113 0.668535 GCTTTGCACGGGAGACTTTT 59.331 50.000 0.00 0.00 0.00 2.27
901 1114 0.465460 TGCTTTGCACGGGAGACTTT 60.465 50.000 0.00 0.00 31.71 2.66
902 1115 1.148273 TGCTTTGCACGGGAGACTT 59.852 52.632 0.00 0.00 31.71 3.01
903 1116 2.828868 TGCTTTGCACGGGAGACT 59.171 55.556 0.00 0.00 31.71 3.24
912 1125 2.616376 AGTCATTTGTACGTGCTTTGCA 59.384 40.909 4.97 0.00 35.60 4.08
913 1126 3.268013 AGTCATTTGTACGTGCTTTGC 57.732 42.857 4.97 0.00 0.00 3.68
914 1127 5.591643 ACTAGTCATTTGTACGTGCTTTG 57.408 39.130 4.97 0.23 0.00 2.77
915 1128 6.129009 CGTTACTAGTCATTTGTACGTGCTTT 60.129 38.462 0.00 0.00 0.00 3.51
916 1129 5.344128 CGTTACTAGTCATTTGTACGTGCTT 59.656 40.000 0.00 0.00 0.00 3.91
917 1130 4.855388 CGTTACTAGTCATTTGTACGTGCT 59.145 41.667 0.00 0.00 0.00 4.40
918 1131 4.489841 GCGTTACTAGTCATTTGTACGTGC 60.490 45.833 0.00 0.00 0.00 5.34
919 1132 4.030977 GGCGTTACTAGTCATTTGTACGTG 59.969 45.833 0.00 0.00 0.00 4.49
920 1133 4.168760 GGCGTTACTAGTCATTTGTACGT 58.831 43.478 0.00 0.00 0.00 3.57
921 1134 4.030977 GTGGCGTTACTAGTCATTTGTACG 59.969 45.833 0.00 0.95 0.00 3.67
922 1135 4.030977 CGTGGCGTTACTAGTCATTTGTAC 59.969 45.833 0.00 0.00 0.00 2.90
923 1136 4.168014 CGTGGCGTTACTAGTCATTTGTA 58.832 43.478 0.00 0.00 0.00 2.41
924 1137 2.991190 CGTGGCGTTACTAGTCATTTGT 59.009 45.455 0.00 0.00 0.00 2.83
925 1138 2.991190 ACGTGGCGTTACTAGTCATTTG 59.009 45.455 0.00 0.00 36.35 2.32
926 1139 2.991190 CACGTGGCGTTACTAGTCATTT 59.009 45.455 7.95 0.00 38.32 2.32
927 1140 2.229543 TCACGTGGCGTTACTAGTCATT 59.770 45.455 17.00 0.00 38.32 2.57
928 1141 1.814394 TCACGTGGCGTTACTAGTCAT 59.186 47.619 17.00 0.00 38.32 3.06
929 1142 1.237533 TCACGTGGCGTTACTAGTCA 58.762 50.000 17.00 0.00 38.32 3.41
930 1143 1.981533 GTTCACGTGGCGTTACTAGTC 59.018 52.381 17.00 0.00 38.32 2.59
931 1144 1.337703 TGTTCACGTGGCGTTACTAGT 59.662 47.619 17.00 0.00 38.32 2.57
932 1145 2.054687 TGTTCACGTGGCGTTACTAG 57.945 50.000 17.00 0.00 38.32 2.57
933 1146 2.505628 TTGTTCACGTGGCGTTACTA 57.494 45.000 17.00 1.31 38.32 1.82
934 1147 1.654317 TTTGTTCACGTGGCGTTACT 58.346 45.000 17.00 0.00 38.32 2.24
935 1148 2.673976 ATTTGTTCACGTGGCGTTAC 57.326 45.000 17.00 7.15 38.32 2.50
1098 1574 4.344865 ACCTGCCGCCGGATGTTT 62.345 61.111 7.68 0.00 0.00 2.83
1473 1949 3.279434 GGGACATACTTTTTCAGGCGAT 58.721 45.455 0.00 0.00 0.00 4.58
1501 1977 4.440387 GGAGAAGATAAGAAGACGGTGGAC 60.440 50.000 0.00 0.00 0.00 4.02
1510 1986 6.183360 GGTGGAGAGAAGGAGAAGATAAGAAG 60.183 46.154 0.00 0.00 0.00 2.85
1519 1995 1.971357 GTGTGGTGGAGAGAAGGAGAA 59.029 52.381 0.00 0.00 0.00 2.87
2017 3522 6.695292 TTTCGTACAGAAACTTCCGTATTC 57.305 37.500 8.24 0.00 43.35 1.75
2259 3768 1.592669 CGCCCTAATCAGCTCGTGG 60.593 63.158 0.00 0.00 0.00 4.94
2260 3769 2.240500 GCGCCCTAATCAGCTCGTG 61.241 63.158 0.00 0.00 0.00 4.35
2322 3831 0.528684 CTCGCCCTTGTCGAATCTCC 60.529 60.000 0.00 0.00 35.38 3.71
2590 4099 3.695606 GTCCTCAGCCTGGCGACA 61.696 66.667 13.96 0.00 39.59 4.35
2686 4195 2.678934 AAGCCTCCACGCGGTCTA 60.679 61.111 12.47 0.00 0.00 2.59
2810 4478 1.002366 GTAGCAGTGTTGGAGCATCG 58.998 55.000 0.00 0.00 34.37 3.84
2813 4481 0.321671 GGAGTAGCAGTGTTGGAGCA 59.678 55.000 0.00 0.00 0.00 4.26
2852 4520 6.087522 GCATGATCTCGTATTCTGGTAGTAC 58.912 44.000 0.00 0.00 0.00 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.