Multiple sequence alignment - TraesCS2B01G357300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G357300 chr2B 100.000 4115 0 0 1 4115 510401054 510396940 0.000000e+00 7600.0
1 TraesCS2B01G357300 chr2B 100.000 200 0 0 4473 4672 510396582 510396383 2.050000e-98 370.0
2 TraesCS2B01G357300 chr2B 90.244 82 7 1 3969 4049 547919332 547919413 6.390000e-19 106.0
3 TraesCS2B01G357300 chr2B 95.161 62 3 0 4523 4584 716121080 716121019 1.070000e-16 99.0
4 TraesCS2B01G357300 chr2B 95.161 62 3 0 4523 4584 799704037 799703976 1.070000e-16 99.0
5 TraesCS2B01G357300 chr2B 92.537 67 4 1 4518 4584 154232477 154232412 1.380000e-15 95.3
6 TraesCS2B01G357300 chr2A 95.201 3459 131 13 1 3442 554823024 554826464 0.000000e+00 5435.0
7 TraesCS2B01G357300 chr2A 90.714 560 29 8 3410 3963 554826462 554827004 0.000000e+00 725.0
8 TraesCS2B01G357300 chr2A 93.750 64 4 0 4521 4584 763791931 763791994 3.850000e-16 97.1
9 TraesCS2B01G357300 chr2D 95.105 3371 143 13 1 3364 431516188 431512833 0.000000e+00 5291.0
10 TraesCS2B01G357300 chr2D 90.719 334 16 7 3532 3864 431512435 431512116 9.290000e-117 431.0
11 TraesCS2B01G357300 chr2D 97.297 111 3 0 3355 3465 431512543 431512433 6.170000e-44 189.0
12 TraesCS2B01G357300 chr2D 93.277 119 6 1 3860 3978 431503847 431503731 1.730000e-39 174.0
13 TraesCS2B01G357300 chr2D 91.429 70 4 2 4516 4584 98995680 98995612 1.380000e-15 95.3
14 TraesCS2B01G357300 chr3B 96.721 61 2 0 4524 4584 173856874 173856934 8.270000e-18 102.0
15 TraesCS2B01G357300 chr1B 95.312 64 1 2 4522 4584 370046258 370046320 2.970000e-17 100.0
16 TraesCS2B01G357300 chr1B 89.333 75 8 0 3973 4047 455940125 455940051 1.380000e-15 95.3
17 TraesCS2B01G357300 chr6A 95.161 62 3 0 4523 4584 498589901 498589840 1.070000e-16 99.0
18 TraesCS2B01G357300 chr7B 89.744 78 5 3 4508 4584 677427563 677427638 3.850000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G357300 chr2B 510396383 510401054 4671 True 3985.000000 7600 100.000000 1 4672 2 chr2B.!!$R4 4671
1 TraesCS2B01G357300 chr2A 554823024 554827004 3980 False 3080.000000 5435 92.957500 1 3963 2 chr2A.!!$F2 3962
2 TraesCS2B01G357300 chr2D 431512116 431516188 4072 True 1970.333333 5291 94.373667 1 3864 3 chr2D.!!$R3 3863

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
445 455 0.463116 GGTCTGGGTTGTTGACACGT 60.463 55.0 0.00 0.00 32.95 4.49 F
1851 1863 0.301987 GAGAACTTGATAAGGCGCGC 59.698 55.0 25.94 25.94 0.00 6.86 F
2330 2342 0.321919 CTCCTAGCTTGCAGCCACAA 60.322 55.0 0.00 0.00 43.77 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1989 2001 0.796312 GCACACTGACCATGGTTACG 59.204 55.0 20.85 12.74 0.00 3.18 R
3151 3163 0.179468 GGTGTGCCCGGTGTACATAT 59.821 55.0 14.75 0.00 41.79 1.78 R
4009 4370 0.107116 ACGTGCCACCAAACCAGTTA 60.107 50.0 0.00 0.00 0.00 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 7.579726 CACTCTAGCAGCAACAAATATATTCC 58.420 38.462 0.00 0.00 0.00 3.01
64 65 6.425114 ACTCTAGCAGCAACAAATATATTCCG 59.575 38.462 0.00 0.00 0.00 4.30
264 274 8.450964 TGCACTTTGAATACTAGCTAAATGAAC 58.549 33.333 0.00 0.00 0.00 3.18
350 360 1.283029 CAATCTTGGCTTCTCAGGGGA 59.717 52.381 0.00 0.00 0.00 4.81
351 361 1.904440 ATCTTGGCTTCTCAGGGGAT 58.096 50.000 0.00 0.00 0.00 3.85
352 362 2.568546 TCTTGGCTTCTCAGGGGATA 57.431 50.000 0.00 0.00 0.00 2.59
353 363 2.845659 TCTTGGCTTCTCAGGGGATAA 58.154 47.619 0.00 0.00 0.00 1.75
376 386 5.996669 ATAACCTCGGTTATTTAAAGCGG 57.003 39.130 14.11 1.41 45.70 5.52
403 413 2.103339 AACCACCTACCCGGAACACG 62.103 60.000 0.73 0.00 43.80 4.49
445 455 0.463116 GGTCTGGGTTGTTGACACGT 60.463 55.000 0.00 0.00 32.95 4.49
835 845 0.490017 TTACTGGGACTGGGACTGGA 59.510 55.000 0.00 0.00 0.00 3.86
869 879 3.886123 CGGATCTGGAGTTTAAATGGGT 58.114 45.455 0.00 0.00 0.00 4.51
882 893 5.458451 TTAAATGGGTATGACATGTGGGA 57.542 39.130 1.15 0.00 0.00 4.37
887 898 1.559682 GGTATGACATGTGGGACCACT 59.440 52.381 21.05 2.27 46.30 4.00
889 900 3.391296 GGTATGACATGTGGGACCACTAT 59.609 47.826 21.05 10.85 46.30 2.12
939 950 2.584835 TGGTTGCTGCTTGGATAAGT 57.415 45.000 0.00 0.00 36.27 2.24
1185 1197 4.914420 CTCGAGGCTACCGCGCTG 62.914 72.222 5.56 0.00 45.89 5.18
1446 1458 3.612247 CTTGGCTACAGGGCGCAGT 62.612 63.158 10.83 7.22 44.11 4.40
1534 1546 3.076258 TACGCGAGCTGTGGGGATG 62.076 63.158 15.93 0.00 0.00 3.51
1538 1550 2.512515 GAGCTGTGGGGATGTCGC 60.513 66.667 0.00 0.00 0.00 5.19
1539 1551 3.315142 GAGCTGTGGGGATGTCGCA 62.315 63.158 0.00 0.00 35.87 5.10
1608 1620 1.021390 GGAATGCGATGATAGCGGGG 61.021 60.000 0.00 0.00 37.44 5.73
1614 1626 0.313043 CGATGATAGCGGGGTACGTT 59.687 55.000 0.00 0.00 46.52 3.99
1686 1698 2.562298 GGTTCAGGCACCATTTGATGAA 59.438 45.455 0.00 0.00 36.73 2.57
1776 1788 3.452627 GAGTTTATGCAGAGGAGAAGGGA 59.547 47.826 0.00 0.00 0.00 4.20
1851 1863 0.301987 GAGAACTTGATAAGGCGCGC 59.698 55.000 25.94 25.94 0.00 6.86
1929 1941 1.585006 CTACACTCAAGCCGACCGT 59.415 57.895 0.00 0.00 0.00 4.83
1989 2001 0.739813 CCGAGGTGAACCCGAATGAC 60.740 60.000 10.68 0.00 38.74 3.06
2042 2054 0.326264 GTCCTGGGTGCACTTGAGAT 59.674 55.000 17.98 0.00 0.00 2.75
2133 2145 3.181445 TGGTGGACTTCTATGCAAAGTGT 60.181 43.478 6.99 0.00 37.10 3.55
2259 2271 1.682005 AGCGCTGGAGCTCTTCTCT 60.682 57.895 10.39 2.15 45.67 3.10
2277 2289 3.419580 TCCATGCGGGAGGCCAAT 61.420 61.111 5.01 0.00 42.15 3.16
2330 2342 0.321919 CTCCTAGCTTGCAGCCACAA 60.322 55.000 0.00 0.00 43.77 3.33
2517 2529 2.046507 GTCTGGAGGGCACTGCTG 60.047 66.667 9.57 8.79 35.84 4.41
2529 2541 2.249535 ACTGCTGTCTGCTTGCACG 61.250 57.895 3.20 0.00 43.37 5.34
2562 2574 3.074412 TGTTGAAATCGGAGAAGAAGCC 58.926 45.455 0.00 0.00 43.58 4.35
2576 2588 1.845143 AGAAGCCCTGAAGCAGATCAT 59.155 47.619 0.00 0.00 32.44 2.45
2590 2602 3.788933 CAGATCATCCCACTAGATCCCT 58.211 50.000 0.00 0.00 39.10 4.20
2591 2603 3.514706 CAGATCATCCCACTAGATCCCTG 59.485 52.174 0.00 0.00 39.10 4.45
2619 2631 8.683615 CACAGTGGTAACTACATACTTCTATCA 58.316 37.037 0.00 0.00 33.79 2.15
2631 2643 7.564793 ACATACTTCTATCAAACACCTATGCA 58.435 34.615 0.00 0.00 0.00 3.96
2679 2691 5.529060 AGCTATGATTCGGAAGGAAATGAAC 59.471 40.000 0.00 0.00 38.36 3.18
2739 2751 0.755686 AGCTGGATGGGACGATCTTC 59.244 55.000 0.00 0.00 0.00 2.87
2973 2985 1.140407 CGATCCGGCTGTCGAAGAAC 61.140 60.000 15.65 0.00 39.69 3.01
3018 3030 1.084370 CCGCCACGAAGTTGATCTCC 61.084 60.000 0.00 0.00 41.61 3.71
3066 3078 2.135933 CGAGACAGGAACAGGTTTCAC 58.864 52.381 0.00 0.00 0.00 3.18
3075 3087 4.342092 AGGAACAGGTTTCACCATTTCAAG 59.658 41.667 8.17 0.00 41.95 3.02
3081 3093 3.831911 GGTTTCACCATTTCAAGGATGGA 59.168 43.478 9.92 0.00 45.59 3.41
3112 3124 4.572389 CCTGCAATGATTACTGGTGAGTAC 59.428 45.833 0.00 0.00 34.23 2.73
3114 3126 5.178061 TGCAATGATTACTGGTGAGTACAG 58.822 41.667 0.00 0.00 41.64 2.74
3144 3156 6.479001 TCTGTTCGTCAAGGTTTTTCTCTTAG 59.521 38.462 0.00 0.00 0.00 2.18
3150 3162 8.365647 TCGTCAAGGTTTTTCTCTTAGATAAGT 58.634 33.333 0.00 0.00 34.93 2.24
3151 3163 9.635520 CGTCAAGGTTTTTCTCTTAGATAAGTA 57.364 33.333 0.00 0.00 34.93 2.24
3330 3356 3.372440 AACCTGATGATTCAGTTCCCC 57.628 47.619 2.61 0.00 46.71 4.81
3505 3859 1.488393 AGATTCCTAGCCTGCCAGAAC 59.512 52.381 0.00 0.00 0.00 3.01
3531 3885 1.888215 TGGTTCTGCAGCTTCAAGAG 58.112 50.000 9.47 0.00 0.00 2.85
3582 3936 2.003196 TGCTGTGCATTGCATGAATG 57.997 45.000 15.49 5.25 41.91 2.67
3616 3970 8.644374 AGGAATAAACCTGTTGCATTTTACTA 57.356 30.769 0.00 0.00 39.01 1.82
3617 3971 8.520351 AGGAATAAACCTGTTGCATTTTACTAC 58.480 33.333 0.00 0.00 39.01 2.73
3618 3972 8.520351 GGAATAAACCTGTTGCATTTTACTACT 58.480 33.333 0.00 0.00 0.00 2.57
3621 3975 9.734984 ATAAACCTGTTGCATTTTACTACTACT 57.265 29.630 0.00 0.00 0.00 2.57
3650 4004 0.308993 AAGAAACTGTGCTGCGCTTC 59.691 50.000 14.92 9.81 0.00 3.86
3661 4015 5.708948 TGTGCTGCGCTTCTATAAAATTTT 58.291 33.333 14.92 8.75 0.00 1.82
3687 4041 1.155042 CAGAGCAGCACAGTTTCCTC 58.845 55.000 0.00 0.00 0.00 3.71
3710 4064 1.433053 TTGTCTTGGCCACAACGACG 61.433 55.000 3.88 0.00 37.46 5.12
3765 4119 2.435372 TGGTTGCTTCTGGTGAGTTT 57.565 45.000 0.00 0.00 0.00 2.66
3814 4174 3.065233 TGGATGCGCACATGTCTAATTTC 59.935 43.478 14.90 0.48 36.35 2.17
3815 4175 3.313526 GGATGCGCACATGTCTAATTTCT 59.686 43.478 14.90 0.00 36.35 2.52
3816 4176 4.201950 GGATGCGCACATGTCTAATTTCTT 60.202 41.667 14.90 0.00 36.35 2.52
3817 4177 4.764679 TGCGCACATGTCTAATTTCTTT 57.235 36.364 5.66 0.00 0.00 2.52
3818 4178 5.119931 TGCGCACATGTCTAATTTCTTTT 57.880 34.783 5.66 0.00 0.00 2.27
3828 4188 9.346725 CATGTCTAATTTCTTTTGTTTAGCCTC 57.653 33.333 0.00 0.00 0.00 4.70
3865 4226 3.195610 TGTAATCCCGGCTGCTGATATAG 59.804 47.826 10.70 0.00 0.00 1.31
3882 4243 7.833285 TGATATAGCCACTTATCTGTACACA 57.167 36.000 0.00 0.00 0.00 3.72
3889 4250 4.382685 CCACTTATCTGTACACATCGGGTT 60.383 45.833 0.00 0.00 0.00 4.11
3942 4303 0.804989 CCTTTCAAGTGTCATCCGGC 59.195 55.000 0.00 0.00 0.00 6.13
3963 4324 1.263217 CGGCAAGTACACCAAGTTGTC 59.737 52.381 1.45 0.00 33.21 3.18
3964 4325 2.294074 GGCAAGTACACCAAGTTGTCA 58.706 47.619 1.45 0.00 35.05 3.58
3965 4326 2.685897 GGCAAGTACACCAAGTTGTCAA 59.314 45.455 1.45 0.00 35.05 3.18
3966 4327 3.129638 GGCAAGTACACCAAGTTGTCAAA 59.870 43.478 1.45 0.00 35.05 2.69
3967 4328 4.202111 GGCAAGTACACCAAGTTGTCAAAT 60.202 41.667 1.45 0.00 35.05 2.32
3968 4329 4.976116 GCAAGTACACCAAGTTGTCAAATC 59.024 41.667 1.45 0.00 33.21 2.17
3969 4330 5.449862 GCAAGTACACCAAGTTGTCAAATCA 60.450 40.000 1.45 0.00 33.21 2.57
3970 4331 6.201517 CAAGTACACCAAGTTGTCAAATCAG 58.798 40.000 1.45 0.00 0.00 2.90
3971 4332 5.680619 AGTACACCAAGTTGTCAAATCAGA 58.319 37.500 1.45 0.00 0.00 3.27
3972 4333 6.119536 AGTACACCAAGTTGTCAAATCAGAA 58.880 36.000 1.45 0.00 0.00 3.02
3973 4334 6.772716 AGTACACCAAGTTGTCAAATCAGAAT 59.227 34.615 1.45 0.00 0.00 2.40
3974 4335 5.835257 ACACCAAGTTGTCAAATCAGAATG 58.165 37.500 1.45 0.00 37.54 2.67
3975 4336 4.682860 CACCAAGTTGTCAAATCAGAATGC 59.317 41.667 1.45 0.00 34.76 3.56
3976 4337 4.586001 ACCAAGTTGTCAAATCAGAATGCT 59.414 37.500 1.45 0.00 34.76 3.79
3977 4338 5.769662 ACCAAGTTGTCAAATCAGAATGCTA 59.230 36.000 1.45 0.00 34.76 3.49
3978 4339 6.088824 CCAAGTTGTCAAATCAGAATGCTAC 58.911 40.000 1.45 0.00 34.76 3.58
3979 4340 6.294120 CCAAGTTGTCAAATCAGAATGCTACA 60.294 38.462 1.45 0.00 34.76 2.74
3980 4341 6.246420 AGTTGTCAAATCAGAATGCTACAC 57.754 37.500 0.00 0.00 34.76 2.90
3981 4342 5.182001 AGTTGTCAAATCAGAATGCTACACC 59.818 40.000 0.00 0.00 34.76 4.16
3982 4343 4.910195 TGTCAAATCAGAATGCTACACCT 58.090 39.130 0.00 0.00 34.76 4.00
3983 4344 6.048732 TGTCAAATCAGAATGCTACACCTA 57.951 37.500 0.00 0.00 34.76 3.08
3984 4345 5.874810 TGTCAAATCAGAATGCTACACCTAC 59.125 40.000 0.00 0.00 34.76 3.18
3985 4346 5.874810 GTCAAATCAGAATGCTACACCTACA 59.125 40.000 0.00 0.00 34.76 2.74
3986 4347 6.540189 GTCAAATCAGAATGCTACACCTACAT 59.460 38.462 0.00 0.00 34.76 2.29
3987 4348 7.710907 GTCAAATCAGAATGCTACACCTACATA 59.289 37.037 0.00 0.00 34.76 2.29
3988 4349 8.264347 TCAAATCAGAATGCTACACCTACATAA 58.736 33.333 0.00 0.00 34.76 1.90
3989 4350 8.892723 CAAATCAGAATGCTACACCTACATAAA 58.107 33.333 0.00 0.00 34.76 1.40
3990 4351 8.668510 AATCAGAATGCTACACCTACATAAAG 57.331 34.615 0.00 0.00 34.76 1.85
3991 4352 7.418337 TCAGAATGCTACACCTACATAAAGA 57.582 36.000 0.00 0.00 34.76 2.52
3992 4353 8.023021 TCAGAATGCTACACCTACATAAAGAT 57.977 34.615 0.00 0.00 34.76 2.40
3993 4354 8.486210 TCAGAATGCTACACCTACATAAAGATT 58.514 33.333 0.00 0.00 34.76 2.40
3994 4355 8.768955 CAGAATGCTACACCTACATAAAGATTC 58.231 37.037 0.00 0.00 0.00 2.52
3995 4356 7.934120 AGAATGCTACACCTACATAAAGATTCC 59.066 37.037 0.00 0.00 0.00 3.01
3996 4357 6.808321 TGCTACACCTACATAAAGATTCCT 57.192 37.500 0.00 0.00 0.00 3.36
3997 4358 7.907841 TGCTACACCTACATAAAGATTCCTA 57.092 36.000 0.00 0.00 0.00 2.94
3998 4359 7.723324 TGCTACACCTACATAAAGATTCCTAC 58.277 38.462 0.00 0.00 0.00 3.18
3999 4360 6.862090 GCTACACCTACATAAAGATTCCTACG 59.138 42.308 0.00 0.00 0.00 3.51
4000 4361 6.786967 ACACCTACATAAAGATTCCTACGT 57.213 37.500 0.00 0.00 0.00 3.57
4001 4362 7.886629 ACACCTACATAAAGATTCCTACGTA 57.113 36.000 0.00 0.00 0.00 3.57
4002 4363 8.297470 ACACCTACATAAAGATTCCTACGTAA 57.703 34.615 0.00 0.00 0.00 3.18
4003 4364 8.921205 ACACCTACATAAAGATTCCTACGTAAT 58.079 33.333 0.00 0.00 0.00 1.89
4004 4365 9.760077 CACCTACATAAAGATTCCTACGTAATT 57.240 33.333 0.00 0.00 0.00 1.40
4005 4366 9.978044 ACCTACATAAAGATTCCTACGTAATTC 57.022 33.333 0.00 0.00 0.00 2.17
4006 4367 9.976511 CCTACATAAAGATTCCTACGTAATTCA 57.023 33.333 0.00 0.00 0.00 2.57
4008 4369 8.658499 ACATAAAGATTCCTACGTAATTCACC 57.342 34.615 0.00 0.00 0.00 4.02
4009 4370 8.483758 ACATAAAGATTCCTACGTAATTCACCT 58.516 33.333 0.00 0.00 0.00 4.00
4010 4371 9.976511 CATAAAGATTCCTACGTAATTCACCTA 57.023 33.333 0.00 0.00 0.00 3.08
4012 4373 8.713737 AAAGATTCCTACGTAATTCACCTAAC 57.286 34.615 0.00 0.00 0.00 2.34
4013 4374 7.657023 AGATTCCTACGTAATTCACCTAACT 57.343 36.000 0.00 0.00 0.00 2.24
4014 4375 7.490000 AGATTCCTACGTAATTCACCTAACTG 58.510 38.462 0.00 0.00 0.00 3.16
4015 4376 5.587388 TCCTACGTAATTCACCTAACTGG 57.413 43.478 0.00 0.00 42.93 4.00
4025 4386 3.430473 CCTAACTGGTTTGGTGGCA 57.570 52.632 5.93 0.00 32.12 4.92
4026 4387 0.958822 CCTAACTGGTTTGGTGGCAC 59.041 55.000 9.70 9.70 32.12 5.01
4027 4388 0.591170 CTAACTGGTTTGGTGGCACG 59.409 55.000 12.17 0.00 0.00 5.34
4028 4389 0.107116 TAACTGGTTTGGTGGCACGT 60.107 50.000 12.17 0.00 0.00 4.49
4029 4390 0.968393 AACTGGTTTGGTGGCACGTT 60.968 50.000 12.17 5.29 0.00 3.99
4030 4391 0.968393 ACTGGTTTGGTGGCACGTTT 60.968 50.000 12.17 0.00 0.00 3.60
4031 4392 0.174617 CTGGTTTGGTGGCACGTTTT 59.825 50.000 12.17 0.00 0.00 2.43
4032 4393 0.108615 TGGTTTGGTGGCACGTTTTG 60.109 50.000 12.17 0.00 0.00 2.44
4033 4394 0.808060 GGTTTGGTGGCACGTTTTGG 60.808 55.000 12.17 0.00 0.00 3.28
4034 4395 0.108567 GTTTGGTGGCACGTTTTGGT 60.109 50.000 12.17 0.00 0.00 3.67
4035 4396 0.608640 TTTGGTGGCACGTTTTGGTT 59.391 45.000 12.17 0.00 0.00 3.67
4036 4397 1.471119 TTGGTGGCACGTTTTGGTTA 58.529 45.000 12.17 0.00 0.00 2.85
4037 4398 1.025812 TGGTGGCACGTTTTGGTTAG 58.974 50.000 12.17 0.00 0.00 2.34
4038 4399 1.310904 GGTGGCACGTTTTGGTTAGA 58.689 50.000 12.17 0.00 0.00 2.10
4039 4400 1.265905 GGTGGCACGTTTTGGTTAGAG 59.734 52.381 12.17 0.00 0.00 2.43
4040 4401 1.265905 GTGGCACGTTTTGGTTAGAGG 59.734 52.381 0.00 0.00 0.00 3.69
4041 4402 1.141254 TGGCACGTTTTGGTTAGAGGA 59.859 47.619 0.00 0.00 0.00 3.71
4042 4403 2.223745 GGCACGTTTTGGTTAGAGGAA 58.776 47.619 0.00 0.00 0.00 3.36
4043 4404 2.619646 GGCACGTTTTGGTTAGAGGAAA 59.380 45.455 0.00 0.00 0.00 3.13
4044 4405 3.254903 GGCACGTTTTGGTTAGAGGAAAT 59.745 43.478 0.00 0.00 0.00 2.17
4045 4406 4.456566 GGCACGTTTTGGTTAGAGGAAATA 59.543 41.667 0.00 0.00 0.00 1.40
4046 4407 5.048573 GGCACGTTTTGGTTAGAGGAAATAA 60.049 40.000 0.00 0.00 0.00 1.40
4047 4408 6.084277 GCACGTTTTGGTTAGAGGAAATAAG 58.916 40.000 0.00 0.00 0.00 1.73
4048 4409 6.608610 CACGTTTTGGTTAGAGGAAATAAGG 58.391 40.000 0.00 0.00 0.00 2.69
4049 4410 5.182570 ACGTTTTGGTTAGAGGAAATAAGGC 59.817 40.000 0.00 0.00 0.00 4.35
4050 4411 5.182380 CGTTTTGGTTAGAGGAAATAAGGCA 59.818 40.000 0.00 0.00 0.00 4.75
4051 4412 6.294286 CGTTTTGGTTAGAGGAAATAAGGCAA 60.294 38.462 0.00 0.00 0.00 4.52
4052 4413 7.438564 GTTTTGGTTAGAGGAAATAAGGCAAA 58.561 34.615 0.00 0.00 0.00 3.68
4053 4414 7.604657 TTTGGTTAGAGGAAATAAGGCAAAA 57.395 32.000 0.00 0.00 0.00 2.44
4054 4415 7.790782 TTGGTTAGAGGAAATAAGGCAAAAT 57.209 32.000 0.00 0.00 0.00 1.82
4055 4416 7.790782 TGGTTAGAGGAAATAAGGCAAAATT 57.209 32.000 0.00 0.00 0.00 1.82
4056 4417 7.610865 TGGTTAGAGGAAATAAGGCAAAATTG 58.389 34.615 0.00 0.00 0.00 2.32
4072 4433 6.236017 CAAAATTGCTACACCTACGAAAGA 57.764 37.500 0.00 0.00 0.00 2.52
4073 4434 6.307155 CAAAATTGCTACACCTACGAAAGAG 58.693 40.000 0.00 0.00 0.00 2.85
4074 4435 4.803098 ATTGCTACACCTACGAAAGAGT 57.197 40.909 0.00 0.00 0.00 3.24
4075 4436 4.595762 TTGCTACACCTACGAAAGAGTT 57.404 40.909 0.00 0.00 0.00 3.01
4076 4437 4.170292 TGCTACACCTACGAAAGAGTTC 57.830 45.455 0.00 0.00 0.00 3.01
4077 4438 3.825014 TGCTACACCTACGAAAGAGTTCT 59.175 43.478 0.00 0.00 0.00 3.01
4078 4439 5.005740 TGCTACACCTACGAAAGAGTTCTA 58.994 41.667 0.00 0.00 0.00 2.10
4079 4440 5.106396 TGCTACACCTACGAAAGAGTTCTAC 60.106 44.000 0.00 0.00 0.00 2.59
4080 4441 4.416505 ACACCTACGAAAGAGTTCTACG 57.583 45.455 0.00 6.96 34.11 3.51
4081 4442 3.817647 ACACCTACGAAAGAGTTCTACGT 59.182 43.478 14.85 14.85 40.26 3.57
4082 4443 4.997395 ACACCTACGAAAGAGTTCTACGTA 59.003 41.667 15.30 15.30 38.90 3.57
4083 4444 5.645497 ACACCTACGAAAGAGTTCTACGTAT 59.355 40.000 15.99 5.94 39.03 3.06
4084 4445 6.183360 ACACCTACGAAAGAGTTCTACGTATC 60.183 42.308 15.99 0.00 39.03 2.24
4085 4446 5.295540 ACCTACGAAAGAGTTCTACGTATCC 59.704 44.000 15.99 0.00 39.03 2.59
4086 4447 5.526846 CCTACGAAAGAGTTCTACGTATCCT 59.473 44.000 15.99 0.00 39.03 3.24
4087 4448 6.703607 CCTACGAAAGAGTTCTACGTATCCTA 59.296 42.308 15.99 3.34 39.03 2.94
4088 4449 6.356757 ACGAAAGAGTTCTACGTATCCTAC 57.643 41.667 0.00 0.00 37.35 3.18
4101 4462 5.371344 CGTATCCTACGTAAACTTGCTTG 57.629 43.478 0.00 0.00 46.41 4.01
4102 4463 4.266976 CGTATCCTACGTAAACTTGCTTGG 59.733 45.833 0.00 0.00 46.41 3.61
4103 4464 2.419667 TCCTACGTAAACTTGCTTGGC 58.580 47.619 0.00 0.00 0.00 4.52
4104 4465 1.467342 CCTACGTAAACTTGCTTGGCC 59.533 52.381 0.00 0.00 0.00 5.36
4105 4466 2.423577 CTACGTAAACTTGCTTGGCCT 58.576 47.619 3.32 0.00 0.00 5.19
4106 4467 2.554370 ACGTAAACTTGCTTGGCCTA 57.446 45.000 3.32 0.00 0.00 3.93
4107 4468 2.853705 ACGTAAACTTGCTTGGCCTAA 58.146 42.857 3.32 0.00 0.00 2.69
4108 4469 3.215975 ACGTAAACTTGCTTGGCCTAAA 58.784 40.909 3.32 0.00 0.00 1.85
4109 4470 3.004002 ACGTAAACTTGCTTGGCCTAAAC 59.996 43.478 3.32 0.00 0.00 2.01
4110 4471 3.610821 CGTAAACTTGCTTGGCCTAAACC 60.611 47.826 3.32 0.00 0.00 3.27
4111 4472 2.080654 AACTTGCTTGGCCTAAACCA 57.919 45.000 3.32 0.00 38.16 3.67
4497 4858 3.015145 GCCCTGCCCCCTCACTAA 61.015 66.667 0.00 0.00 0.00 2.24
4498 4859 2.998949 CCCTGCCCCCTCACTAAC 59.001 66.667 0.00 0.00 0.00 2.34
4499 4860 1.923395 CCCTGCCCCCTCACTAACA 60.923 63.158 0.00 0.00 0.00 2.41
4500 4861 1.299976 CCTGCCCCCTCACTAACAC 59.700 63.158 0.00 0.00 0.00 3.32
4501 4862 1.299976 CTGCCCCCTCACTAACACC 59.700 63.158 0.00 0.00 0.00 4.16
4502 4863 2.198304 CTGCCCCCTCACTAACACCC 62.198 65.000 0.00 0.00 0.00 4.61
4503 4864 2.980177 GCCCCCTCACTAACACCCC 61.980 68.421 0.00 0.00 0.00 4.95
4504 4865 1.540367 CCCCCTCACTAACACCCCA 60.540 63.158 0.00 0.00 0.00 4.96
4505 4866 0.919289 CCCCCTCACTAACACCCCAT 60.919 60.000 0.00 0.00 0.00 4.00
4506 4867 0.999712 CCCCTCACTAACACCCCATT 59.000 55.000 0.00 0.00 0.00 3.16
4507 4868 2.201830 CCCCTCACTAACACCCCATTA 58.798 52.381 0.00 0.00 0.00 1.90
4508 4869 2.578940 CCCCTCACTAACACCCCATTAA 59.421 50.000 0.00 0.00 0.00 1.40
4509 4870 3.010808 CCCCTCACTAACACCCCATTAAA 59.989 47.826 0.00 0.00 0.00 1.52
4510 4871 4.509482 CCCCTCACTAACACCCCATTAAAA 60.509 45.833 0.00 0.00 0.00 1.52
4511 4872 5.081032 CCCTCACTAACACCCCATTAAAAA 58.919 41.667 0.00 0.00 0.00 1.94
4512 4873 5.047590 CCCTCACTAACACCCCATTAAAAAC 60.048 44.000 0.00 0.00 0.00 2.43
4513 4874 5.773176 CCTCACTAACACCCCATTAAAAACT 59.227 40.000 0.00 0.00 0.00 2.66
4514 4875 6.294508 CCTCACTAACACCCCATTAAAAACTG 60.295 42.308 0.00 0.00 0.00 3.16
4515 4876 6.366340 TCACTAACACCCCATTAAAAACTGA 58.634 36.000 0.00 0.00 0.00 3.41
4516 4877 6.263617 TCACTAACACCCCATTAAAAACTGAC 59.736 38.462 0.00 0.00 0.00 3.51
4517 4878 6.039941 CACTAACACCCCATTAAAAACTGACA 59.960 38.462 0.00 0.00 0.00 3.58
4518 4879 5.941555 AACACCCCATTAAAAACTGACAA 57.058 34.783 0.00 0.00 0.00 3.18
4519 4880 5.529581 ACACCCCATTAAAAACTGACAAG 57.470 39.130 0.00 0.00 0.00 3.16
4520 4881 4.959839 ACACCCCATTAAAAACTGACAAGT 59.040 37.500 0.00 0.00 38.71 3.16
4521 4882 5.068591 ACACCCCATTAAAAACTGACAAGTC 59.931 40.000 0.00 0.00 34.77 3.01
4522 4883 5.068460 CACCCCATTAAAAACTGACAAGTCA 59.932 40.000 2.56 2.56 34.77 3.41
4523 4884 5.838521 ACCCCATTAAAAACTGACAAGTCAT 59.161 36.000 3.01 0.00 39.13 3.06
4524 4885 7.007723 ACCCCATTAAAAACTGACAAGTCATA 58.992 34.615 3.01 0.00 39.13 2.15
4525 4886 7.673926 ACCCCATTAAAAACTGACAAGTCATAT 59.326 33.333 3.01 0.00 39.13 1.78
4526 4887 9.184523 CCCCATTAAAAACTGACAAGTCATATA 57.815 33.333 3.01 0.00 39.13 0.86
4534 4895 8.779354 AAACTGACAAGTCATATACTTTCTCC 57.221 34.615 3.01 0.00 46.61 3.71
4535 4896 6.565234 ACTGACAAGTCATATACTTTCTCCG 58.435 40.000 3.01 0.00 46.61 4.63
4536 4897 6.153000 ACTGACAAGTCATATACTTTCTCCGT 59.847 38.462 3.01 0.00 46.61 4.69
4537 4898 6.561614 TGACAAGTCATATACTTTCTCCGTC 58.438 40.000 0.00 0.00 46.61 4.79
4538 4899 5.903810 ACAAGTCATATACTTTCTCCGTCC 58.096 41.667 0.00 0.00 46.61 4.79
4539 4900 4.832590 AGTCATATACTTTCTCCGTCCG 57.167 45.455 0.00 0.00 33.35 4.79
4540 4901 4.458397 AGTCATATACTTTCTCCGTCCGA 58.542 43.478 0.00 0.00 33.35 4.55
4541 4902 4.885907 AGTCATATACTTTCTCCGTCCGAA 59.114 41.667 0.00 0.00 33.35 4.30
4542 4903 5.359009 AGTCATATACTTTCTCCGTCCGAAA 59.641 40.000 0.00 0.00 33.35 3.46
4543 4904 6.038356 GTCATATACTTTCTCCGTCCGAAAA 58.962 40.000 0.00 0.00 30.73 2.29
4544 4905 6.700520 GTCATATACTTTCTCCGTCCGAAAAT 59.299 38.462 0.00 0.00 30.73 1.82
4545 4906 7.864379 GTCATATACTTTCTCCGTCCGAAAATA 59.136 37.037 0.00 0.00 30.73 1.40
4546 4907 7.864379 TCATATACTTTCTCCGTCCGAAAATAC 59.136 37.037 0.00 0.00 30.73 1.89
4547 4908 4.532314 ACTTTCTCCGTCCGAAAATACT 57.468 40.909 0.00 0.00 30.73 2.12
4548 4909 4.891260 ACTTTCTCCGTCCGAAAATACTT 58.109 39.130 0.00 0.00 30.73 2.24
4549 4910 4.689345 ACTTTCTCCGTCCGAAAATACTTG 59.311 41.667 0.00 0.00 30.73 3.16
4550 4911 3.947910 TCTCCGTCCGAAAATACTTGT 57.052 42.857 0.00 0.00 0.00 3.16
4551 4912 3.841643 TCTCCGTCCGAAAATACTTGTC 58.158 45.455 0.00 0.00 0.00 3.18
4552 4913 3.256383 TCTCCGTCCGAAAATACTTGTCA 59.744 43.478 0.00 0.00 0.00 3.58
4553 4914 4.081862 TCTCCGTCCGAAAATACTTGTCAT 60.082 41.667 0.00 0.00 0.00 3.06
4554 4915 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
4555 4916 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
4556 4917 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
4557 4918 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
4558 4919 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
4559 4920 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
4560 4921 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
4561 4922 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
4562 4923 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
4563 4924 7.975616 CCGAAAATACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
4591 4952 8.635765 AAAAGAATGTATCTAGAAAACTGCCA 57.364 30.769 0.00 0.00 37.42 4.92
4592 4953 8.635765 AAAGAATGTATCTAGAAAACTGCCAA 57.364 30.769 0.00 0.00 37.42 4.52
4593 4954 7.856145 AGAATGTATCTAGAAAACTGCCAAG 57.144 36.000 0.00 0.00 36.32 3.61
4594 4955 7.398024 AGAATGTATCTAGAAAACTGCCAAGT 58.602 34.615 0.00 0.00 36.32 3.16
4595 4956 7.550906 AGAATGTATCTAGAAAACTGCCAAGTC 59.449 37.037 0.00 0.00 36.32 3.01
4596 4957 6.109156 TGTATCTAGAAAACTGCCAAGTCA 57.891 37.500 0.00 0.00 34.77 3.41
4597 4958 5.932303 TGTATCTAGAAAACTGCCAAGTCAC 59.068 40.000 0.00 0.00 34.77 3.67
4598 4959 4.415881 TCTAGAAAACTGCCAAGTCACA 57.584 40.909 0.00 0.00 34.77 3.58
4599 4960 4.973168 TCTAGAAAACTGCCAAGTCACAT 58.027 39.130 0.00 0.00 34.77 3.21
4600 4961 6.109156 TCTAGAAAACTGCCAAGTCACATA 57.891 37.500 0.00 0.00 34.77 2.29
4601 4962 6.530120 TCTAGAAAACTGCCAAGTCACATAA 58.470 36.000 0.00 0.00 34.77 1.90
4602 4963 5.438761 AGAAAACTGCCAAGTCACATAAC 57.561 39.130 0.00 0.00 34.77 1.89
4603 4964 4.887071 AGAAAACTGCCAAGTCACATAACA 59.113 37.500 0.00 0.00 34.77 2.41
4604 4965 5.359576 AGAAAACTGCCAAGTCACATAACAA 59.640 36.000 0.00 0.00 34.77 2.83
4605 4966 4.568152 AACTGCCAAGTCACATAACAAC 57.432 40.909 0.00 0.00 34.77 3.32
4606 4967 2.884639 ACTGCCAAGTCACATAACAACC 59.115 45.455 0.00 0.00 26.77 3.77
4607 4968 2.884012 CTGCCAAGTCACATAACAACCA 59.116 45.455 0.00 0.00 0.00 3.67
4608 4969 2.884012 TGCCAAGTCACATAACAACCAG 59.116 45.455 0.00 0.00 0.00 4.00
4609 4970 2.351738 GCCAAGTCACATAACAACCAGC 60.352 50.000 0.00 0.00 0.00 4.85
4610 4971 2.884012 CCAAGTCACATAACAACCAGCA 59.116 45.455 0.00 0.00 0.00 4.41
4611 4972 3.507233 CCAAGTCACATAACAACCAGCAT 59.493 43.478 0.00 0.00 0.00 3.79
4612 4973 4.478699 CAAGTCACATAACAACCAGCATG 58.521 43.478 0.00 0.00 0.00 4.06
4613 4974 3.754965 AGTCACATAACAACCAGCATGT 58.245 40.909 0.00 0.00 31.91 3.21
4614 4975 4.905429 AGTCACATAACAACCAGCATGTA 58.095 39.130 0.00 0.00 30.66 2.29
4615 4976 4.937620 AGTCACATAACAACCAGCATGTAG 59.062 41.667 0.00 0.00 30.66 2.74
4616 4977 4.094887 GTCACATAACAACCAGCATGTAGG 59.905 45.833 4.29 4.29 30.66 3.18
4617 4978 4.009675 CACATAACAACCAGCATGTAGGT 58.990 43.478 5.51 5.51 40.61 3.08
4618 4979 4.094887 CACATAACAACCAGCATGTAGGTC 59.905 45.833 10.95 0.00 37.07 3.85
4619 4980 4.019321 ACATAACAACCAGCATGTAGGTCT 60.019 41.667 10.95 3.45 37.07 3.85
4620 4981 5.188948 ACATAACAACCAGCATGTAGGTCTA 59.811 40.000 10.95 5.16 37.07 2.59
4621 4982 3.895232 ACAACCAGCATGTAGGTCTAG 57.105 47.619 10.95 7.58 37.07 2.43
4622 4983 2.093447 ACAACCAGCATGTAGGTCTAGC 60.093 50.000 10.95 0.00 37.07 3.42
4623 4984 1.866015 ACCAGCATGTAGGTCTAGCA 58.134 50.000 5.51 0.00 30.79 3.49
4624 4985 2.402564 ACCAGCATGTAGGTCTAGCAT 58.597 47.619 5.51 0.00 30.79 3.79
4625 4986 2.774234 ACCAGCATGTAGGTCTAGCATT 59.226 45.455 5.51 0.00 30.79 3.56
4626 4987 3.967326 ACCAGCATGTAGGTCTAGCATTA 59.033 43.478 5.51 0.00 30.79 1.90
4627 4988 4.202264 ACCAGCATGTAGGTCTAGCATTAC 60.202 45.833 5.51 0.00 30.79 1.89
4628 4989 4.039730 CCAGCATGTAGGTCTAGCATTACT 59.960 45.833 0.00 0.00 0.00 2.24
4629 4990 5.226396 CAGCATGTAGGTCTAGCATTACTC 58.774 45.833 0.00 0.00 0.00 2.59
4630 4991 4.022762 AGCATGTAGGTCTAGCATTACTCG 60.023 45.833 0.00 0.00 0.00 4.18
4631 4992 4.023107 GCATGTAGGTCTAGCATTACTCGA 60.023 45.833 0.00 0.00 0.00 4.04
4632 4993 5.507482 GCATGTAGGTCTAGCATTACTCGAA 60.507 44.000 0.00 0.00 0.00 3.71
4633 4994 6.504398 CATGTAGGTCTAGCATTACTCGAAA 58.496 40.000 0.00 0.00 0.00 3.46
4634 4995 6.710597 TGTAGGTCTAGCATTACTCGAAAT 57.289 37.500 0.00 0.00 0.00 2.17
4635 4996 7.812690 TGTAGGTCTAGCATTACTCGAAATA 57.187 36.000 0.00 0.00 0.00 1.40
4636 4997 8.229253 TGTAGGTCTAGCATTACTCGAAATAA 57.771 34.615 0.00 0.00 0.00 1.40
4637 4998 8.350722 TGTAGGTCTAGCATTACTCGAAATAAG 58.649 37.037 0.00 0.00 0.00 1.73
4638 4999 6.750148 AGGTCTAGCATTACTCGAAATAAGG 58.250 40.000 0.00 0.00 0.00 2.69
4639 5000 5.927115 GGTCTAGCATTACTCGAAATAAGGG 59.073 44.000 3.74 0.00 0.00 3.95
4640 5001 5.927115 GTCTAGCATTACTCGAAATAAGGGG 59.073 44.000 3.74 0.00 0.00 4.79
4641 5002 5.836898 TCTAGCATTACTCGAAATAAGGGGA 59.163 40.000 3.74 0.00 0.00 4.81
4642 5003 4.962155 AGCATTACTCGAAATAAGGGGAG 58.038 43.478 3.74 0.00 0.00 4.30
4643 5004 4.065789 GCATTACTCGAAATAAGGGGAGG 58.934 47.826 3.74 0.00 0.00 4.30
4644 5005 4.642429 CATTACTCGAAATAAGGGGAGGG 58.358 47.826 0.00 0.00 0.00 4.30
4645 5006 1.508256 ACTCGAAATAAGGGGAGGGG 58.492 55.000 0.00 0.00 0.00 4.79
4646 5007 0.108774 CTCGAAATAAGGGGAGGGGC 59.891 60.000 0.00 0.00 0.00 5.80
4647 5008 1.150764 CGAAATAAGGGGAGGGGCC 59.849 63.158 0.00 0.00 0.00 5.80
4661 5022 3.332385 GGCCCTACCCCGGTTGAA 61.332 66.667 0.00 0.00 0.00 2.69
4662 5023 2.758434 GCCCTACCCCGGTTGAAA 59.242 61.111 0.00 0.00 0.00 2.69
4663 5024 1.305287 GCCCTACCCCGGTTGAAAT 59.695 57.895 0.00 0.00 0.00 2.17
4664 5025 0.750546 GCCCTACCCCGGTTGAAATC 60.751 60.000 0.00 0.00 0.00 2.17
4665 5026 0.621609 CCCTACCCCGGTTGAAATCA 59.378 55.000 0.00 0.00 0.00 2.57
4666 5027 1.408266 CCCTACCCCGGTTGAAATCAG 60.408 57.143 0.00 0.00 0.00 2.90
4667 5028 1.408266 CCTACCCCGGTTGAAATCAGG 60.408 57.143 0.00 0.00 0.00 3.86
4668 5029 0.621609 TACCCCGGTTGAAATCAGGG 59.378 55.000 0.00 4.39 39.44 4.45
4669 5030 4.337013 CCCGGTTGAAATCAGGGG 57.663 61.111 0.00 1.34 36.82 4.79
4670 5031 1.379843 CCCGGTTGAAATCAGGGGG 60.380 63.158 0.00 5.24 36.82 5.40
4671 5032 2.052104 CCGGTTGAAATCAGGGGGC 61.052 63.158 0.00 0.00 0.00 5.80
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 4.678509 GTGAACTGAACTTCACAACACA 57.321 40.909 7.10 0.00 46.38 3.72
220 230 2.064014 GCAAGAAGCAATGGTCAAAGC 58.936 47.619 0.00 0.00 44.79 3.51
264 274 7.315247 TGATGTCGGTATTAATCAAACCTTG 57.685 36.000 4.72 0.00 0.00 3.61
293 303 4.142881 GGATTCCTGCGTTGTTCTAGTTTC 60.143 45.833 0.00 0.00 0.00 2.78
376 386 1.472728 CGGGTAGGTGGTTGCTATCAC 60.473 57.143 2.64 2.64 0.00 3.06
403 413 2.501610 GACCTGCCCCTCATCGAC 59.498 66.667 0.00 0.00 0.00 4.20
679 689 3.014538 TGGGTGGTGGATGCGGAT 61.015 61.111 0.00 0.00 0.00 4.18
788 798 1.625818 GGCTTCTTCCTCTCCAACTCA 59.374 52.381 0.00 0.00 0.00 3.41
835 845 0.396974 AGATCCGCCTCTCTGCTCTT 60.397 55.000 0.00 0.00 0.00 2.85
910 921 2.031919 AGCAACCAATCCGTGCGA 59.968 55.556 0.00 0.00 0.00 5.10
939 950 2.113860 ATCGCTGCTTGCCTTTCTTA 57.886 45.000 0.00 0.00 38.78 2.10
957 969 0.527565 CTTAAGCGCACCAAGCCAAT 59.472 50.000 11.47 0.00 41.38 3.16
988 1000 2.512515 GGCCATTCGAGCTCGCTT 60.513 61.111 30.97 17.37 39.60 4.68
1422 1434 0.819666 GCCCTGTAGCCAAGGCATAC 60.820 60.000 14.40 12.54 45.89 2.39
1446 1458 1.372499 GACAGCGTACGCCTGAACA 60.372 57.895 34.88 0.00 43.17 3.18
1561 1573 1.133792 CACACCCTTTTCCTCCACTGT 60.134 52.381 0.00 0.00 0.00 3.55
1566 1578 2.158579 TGTAACCACACCCTTTTCCTCC 60.159 50.000 0.00 0.00 0.00 4.30
1608 1620 5.320549 TCCAGTCTCCATTCTTAACGTAC 57.679 43.478 0.00 0.00 0.00 3.67
1612 1624 5.422214 TCCTTCCAGTCTCCATTCTTAAC 57.578 43.478 0.00 0.00 0.00 2.01
1614 1626 4.033709 CCTCCTTCCAGTCTCCATTCTTA 58.966 47.826 0.00 0.00 0.00 2.10
1686 1698 1.949525 GCAACACTCACCAATGTGACT 59.050 47.619 0.00 0.00 46.40 3.41
1776 1788 3.891366 CCAAGTTTCTGTTCCTCACCATT 59.109 43.478 0.00 0.00 0.00 3.16
1851 1863 3.504906 AGTGCATCCTGTCAAACAATCTG 59.495 43.478 0.00 0.00 0.00 2.90
1929 1941 5.401531 AAATAGTAAGTGCCTCTCGACAA 57.598 39.130 0.00 0.00 0.00 3.18
1945 1957 5.198965 AGCCTGCATCTCATTGAAAATAGT 58.801 37.500 0.00 0.00 0.00 2.12
1989 2001 0.796312 GCACACTGACCATGGTTACG 59.204 55.000 20.85 12.74 0.00 3.18
2042 2054 1.907807 GAATGCACCCACTTGCCCA 60.908 57.895 0.00 0.00 42.25 5.36
2259 2271 1.640593 TATTGGCCTCCCGCATGGAA 61.641 55.000 3.32 0.00 44.57 3.53
2277 2289 5.876651 ATGTGACATCTGTAGGCTCAATA 57.123 39.130 0.00 0.00 0.00 1.90
2330 2342 1.903183 GACCCTCCTCAACTAAGCAGT 59.097 52.381 0.00 0.00 36.19 4.40
2517 2529 1.279840 GTGAACCGTGCAAGCAGAC 59.720 57.895 0.00 0.00 0.00 3.51
2529 2541 5.751028 TCCGATTTCAACATTTTTGTGAACC 59.249 36.000 0.00 0.00 0.00 3.62
2562 2574 1.489649 AGTGGGATGATCTGCTTCAGG 59.510 52.381 0.00 0.00 31.51 3.86
2576 2588 1.361197 TGTGACAGGGATCTAGTGGGA 59.639 52.381 0.00 0.00 0.00 4.37
2590 2602 6.492429 AGAAGTATGTAGTTACCACTGTGACA 59.508 38.462 9.86 4.78 33.62 3.58
2591 2603 6.921914 AGAAGTATGTAGTTACCACTGTGAC 58.078 40.000 9.86 0.00 34.06 3.67
2619 2631 2.308570 TCCCACTGATGCATAGGTGTTT 59.691 45.455 21.96 0.00 0.00 2.83
2628 2640 0.697658 TCCATTGTCCCACTGATGCA 59.302 50.000 0.00 0.00 0.00 3.96
2631 2643 3.308688 CCTCTTTCCATTGTCCCACTGAT 60.309 47.826 0.00 0.00 0.00 2.90
2652 2664 1.070758 TCCTTCCGAATCATAGCTGCC 59.929 52.381 0.00 0.00 0.00 4.85
2679 2691 4.813697 GGAATTTTCTTGATCCCTCTCTCG 59.186 45.833 0.00 0.00 0.00 4.04
2739 2751 3.784883 CTGTCTTCAGCAAAGAACTCG 57.215 47.619 3.40 0.00 45.50 4.18
2973 2985 1.373497 GTCCACGCACACTCTCAGG 60.373 63.158 0.00 0.00 0.00 3.86
3018 3030 3.703001 ATCTCCCTGTTGTACACCTTG 57.297 47.619 0.00 0.00 0.00 3.61
3045 3057 2.036387 TGAAACCTGTTCCTGTCTCGA 58.964 47.619 0.00 0.00 0.00 4.04
3066 3078 3.449737 AGCACAATCCATCCTTGAAATGG 59.550 43.478 0.00 0.00 44.27 3.16
3075 3087 2.412605 GCAGGAGCACAATCCATCC 58.587 57.895 0.00 0.00 42.26 3.51
3114 3126 5.674933 AAAACCTTGACGAACAGAGAATC 57.325 39.130 0.00 0.00 0.00 2.52
3124 3136 8.365647 ACTTATCTAAGAGAAAAACCTTGACGA 58.634 33.333 4.03 0.00 37.08 4.20
3144 3156 5.166398 GTGCCCGGTGTACATATACTTATC 58.834 45.833 0.00 0.00 32.00 1.75
3150 3162 1.413445 GGTGTGCCCGGTGTACATATA 59.587 52.381 14.75 0.00 41.79 0.86
3151 3163 0.179468 GGTGTGCCCGGTGTACATAT 59.821 55.000 14.75 0.00 41.79 1.78
3189 3205 4.579454 TTGTCGTACTTACAGAGTGCTT 57.421 40.909 0.00 0.00 38.67 3.91
3260 3286 5.308014 TCAAACTCTGCAGAGAATTTGCTA 58.692 37.500 42.76 25.82 44.74 3.49
3481 3835 3.010584 TCTGGCAGGCTAGGAATCTTTTT 59.989 43.478 15.73 0.00 0.00 1.94
3483 3837 2.200081 TCTGGCAGGCTAGGAATCTTT 58.800 47.619 15.73 0.00 0.00 2.52
3531 3885 2.052157 GTACACACTCACAGTTCTCGC 58.948 52.381 0.00 0.00 0.00 5.03
3582 3936 3.254903 ACAGGTTTATTCCTCGTTTTGGC 59.745 43.478 0.00 0.00 35.37 4.52
3616 3970 8.610035 GCACAGTTTCTTTACAAGTTAAGTAGT 58.390 33.333 0.00 0.00 0.00 2.73
3617 3971 8.827677 AGCACAGTTTCTTTACAAGTTAAGTAG 58.172 33.333 0.00 0.00 0.00 2.57
3618 3972 8.609176 CAGCACAGTTTCTTTACAAGTTAAGTA 58.391 33.333 0.00 0.00 0.00 2.24
3619 3973 7.472543 CAGCACAGTTTCTTTACAAGTTAAGT 58.527 34.615 0.00 0.00 0.00 2.24
3620 3974 6.414987 GCAGCACAGTTTCTTTACAAGTTAAG 59.585 38.462 0.00 0.00 0.00 1.85
3621 3975 6.262601 GCAGCACAGTTTCTTTACAAGTTAA 58.737 36.000 0.00 0.00 0.00 2.01
3642 3996 7.842721 GCATTTGAAAATTTTATAGAAGCGCAG 59.157 33.333 11.47 0.00 0.00 5.18
3650 4004 8.325997 GCTGCTCTGCATTTGAAAATTTTATAG 58.674 33.333 2.75 0.00 38.13 1.31
3661 4015 0.879090 CTGTGCTGCTCTGCATTTGA 59.121 50.000 0.00 0.00 45.23 2.69
3687 4041 1.069022 CGTTGTGGCCAAGACAATGAG 60.069 52.381 17.74 6.97 41.10 2.90
3710 4064 2.361104 TCGACCCAGCAAATGCCC 60.361 61.111 0.94 0.00 43.38 5.36
3841 4202 1.419381 TCAGCAGCCGGGATTACATA 58.581 50.000 2.18 0.00 0.00 2.29
3865 4226 3.123804 CCGATGTGTACAGATAAGTGGC 58.876 50.000 5.33 0.00 0.00 5.01
3881 4242 4.141937 TGGAGATTTCTCACTAACCCGATG 60.142 45.833 9.65 0.00 44.60 3.84
3882 4243 4.030913 TGGAGATTTCTCACTAACCCGAT 58.969 43.478 9.65 0.00 44.60 4.18
3889 4250 6.068670 TGTCGGATATGGAGATTTCTCACTA 58.931 40.000 9.65 1.34 44.60 2.74
3942 4303 0.591170 CAACTTGGTGTACTTGCCGG 59.409 55.000 0.00 0.00 0.00 6.13
3963 4324 6.932356 ATGTAGGTGTAGCATTCTGATTTG 57.068 37.500 0.00 0.00 0.00 2.32
3964 4325 9.113838 CTTTATGTAGGTGTAGCATTCTGATTT 57.886 33.333 0.00 0.00 0.00 2.17
3965 4326 8.486210 TCTTTATGTAGGTGTAGCATTCTGATT 58.514 33.333 0.00 0.00 0.00 2.57
3966 4327 8.023021 TCTTTATGTAGGTGTAGCATTCTGAT 57.977 34.615 0.00 0.00 0.00 2.90
3967 4328 7.418337 TCTTTATGTAGGTGTAGCATTCTGA 57.582 36.000 0.00 0.00 0.00 3.27
3968 4329 8.668510 AATCTTTATGTAGGTGTAGCATTCTG 57.331 34.615 0.00 0.00 0.00 3.02
3969 4330 7.934120 GGAATCTTTATGTAGGTGTAGCATTCT 59.066 37.037 0.00 0.00 0.00 2.40
3970 4331 7.934120 AGGAATCTTTATGTAGGTGTAGCATTC 59.066 37.037 0.00 0.00 0.00 2.67
3971 4332 7.806180 AGGAATCTTTATGTAGGTGTAGCATT 58.194 34.615 0.00 0.00 0.00 3.56
3972 4333 7.380423 AGGAATCTTTATGTAGGTGTAGCAT 57.620 36.000 0.00 0.00 0.00 3.79
3973 4334 6.808321 AGGAATCTTTATGTAGGTGTAGCA 57.192 37.500 0.00 0.00 0.00 3.49
3974 4335 6.862090 CGTAGGAATCTTTATGTAGGTGTAGC 59.138 42.308 0.00 0.00 0.00 3.58
3975 4336 7.938715 ACGTAGGAATCTTTATGTAGGTGTAG 58.061 38.462 0.00 0.00 0.00 2.74
3976 4337 7.886629 ACGTAGGAATCTTTATGTAGGTGTA 57.113 36.000 0.00 0.00 0.00 2.90
3977 4338 6.786967 ACGTAGGAATCTTTATGTAGGTGT 57.213 37.500 0.00 0.00 0.00 4.16
3978 4339 9.760077 AATTACGTAGGAATCTTTATGTAGGTG 57.240 33.333 0.00 0.00 0.00 4.00
3979 4340 9.978044 GAATTACGTAGGAATCTTTATGTAGGT 57.022 33.333 0.00 0.00 0.00 3.08
3980 4341 9.976511 TGAATTACGTAGGAATCTTTATGTAGG 57.023 33.333 0.00 0.00 0.00 3.18
3982 4343 9.754382 GGTGAATTACGTAGGAATCTTTATGTA 57.246 33.333 0.00 0.00 0.00 2.29
3983 4344 8.483758 AGGTGAATTACGTAGGAATCTTTATGT 58.516 33.333 0.00 0.00 0.00 2.29
3984 4345 8.888579 AGGTGAATTACGTAGGAATCTTTATG 57.111 34.615 0.00 0.00 0.00 1.90
3986 4347 9.807649 GTTAGGTGAATTACGTAGGAATCTTTA 57.192 33.333 0.00 0.00 31.87 1.85
3987 4348 8.537858 AGTTAGGTGAATTACGTAGGAATCTTT 58.462 33.333 0.00 0.00 31.87 2.52
3988 4349 7.980099 CAGTTAGGTGAATTACGTAGGAATCTT 59.020 37.037 0.00 0.00 31.87 2.40
3989 4350 7.417570 CCAGTTAGGTGAATTACGTAGGAATCT 60.418 40.741 0.00 0.00 31.87 2.40
3990 4351 6.700520 CCAGTTAGGTGAATTACGTAGGAATC 59.299 42.308 0.00 0.00 31.87 2.52
3991 4352 6.579865 CCAGTTAGGTGAATTACGTAGGAAT 58.420 40.000 0.00 0.00 31.87 3.01
3992 4353 5.969423 CCAGTTAGGTGAATTACGTAGGAA 58.031 41.667 0.00 0.00 31.87 3.36
3993 4354 5.587388 CCAGTTAGGTGAATTACGTAGGA 57.413 43.478 0.00 0.00 31.87 2.94
4007 4368 0.958822 GTGCCACCAAACCAGTTAGG 59.041 55.000 0.00 0.00 45.67 2.69
4008 4369 0.591170 CGTGCCACCAAACCAGTTAG 59.409 55.000 0.00 0.00 0.00 2.34
4009 4370 0.107116 ACGTGCCACCAAACCAGTTA 60.107 50.000 0.00 0.00 0.00 2.24
4010 4371 0.968393 AACGTGCCACCAAACCAGTT 60.968 50.000 0.00 0.00 0.00 3.16
4011 4372 0.968393 AAACGTGCCACCAAACCAGT 60.968 50.000 0.00 0.00 0.00 4.00
4012 4373 0.174617 AAAACGTGCCACCAAACCAG 59.825 50.000 0.00 0.00 0.00 4.00
4013 4374 0.108615 CAAAACGTGCCACCAAACCA 60.109 50.000 0.00 0.00 0.00 3.67
4014 4375 0.808060 CCAAAACGTGCCACCAAACC 60.808 55.000 0.00 0.00 0.00 3.27
4015 4376 0.108567 ACCAAAACGTGCCACCAAAC 60.109 50.000 0.00 0.00 0.00 2.93
4016 4377 0.608640 AACCAAAACGTGCCACCAAA 59.391 45.000 0.00 0.00 0.00 3.28
4017 4378 1.405821 CTAACCAAAACGTGCCACCAA 59.594 47.619 0.00 0.00 0.00 3.67
4018 4379 1.025812 CTAACCAAAACGTGCCACCA 58.974 50.000 0.00 0.00 0.00 4.17
4019 4380 1.265905 CTCTAACCAAAACGTGCCACC 59.734 52.381 0.00 0.00 0.00 4.61
4020 4381 1.265905 CCTCTAACCAAAACGTGCCAC 59.734 52.381 0.00 0.00 0.00 5.01
4021 4382 1.141254 TCCTCTAACCAAAACGTGCCA 59.859 47.619 0.00 0.00 0.00 4.92
4022 4383 1.886886 TCCTCTAACCAAAACGTGCC 58.113 50.000 0.00 0.00 0.00 5.01
4023 4384 3.974871 TTTCCTCTAACCAAAACGTGC 57.025 42.857 0.00 0.00 0.00 5.34
4024 4385 6.608610 CCTTATTTCCTCTAACCAAAACGTG 58.391 40.000 0.00 0.00 0.00 4.49
4025 4386 5.182570 GCCTTATTTCCTCTAACCAAAACGT 59.817 40.000 0.00 0.00 0.00 3.99
4026 4387 5.182380 TGCCTTATTTCCTCTAACCAAAACG 59.818 40.000 0.00 0.00 0.00 3.60
4027 4388 6.584185 TGCCTTATTTCCTCTAACCAAAAC 57.416 37.500 0.00 0.00 0.00 2.43
4028 4389 7.604657 TTTGCCTTATTTCCTCTAACCAAAA 57.395 32.000 0.00 0.00 0.00 2.44
4029 4390 7.604657 TTTTGCCTTATTTCCTCTAACCAAA 57.395 32.000 0.00 0.00 0.00 3.28
4030 4391 7.790782 ATTTTGCCTTATTTCCTCTAACCAA 57.209 32.000 0.00 0.00 0.00 3.67
4031 4392 7.610865 CAATTTTGCCTTATTTCCTCTAACCA 58.389 34.615 0.00 0.00 0.00 3.67
4049 4410 6.073222 ACTCTTTCGTAGGTGTAGCAATTTTG 60.073 38.462 0.00 0.00 0.00 2.44
4050 4411 5.995897 ACTCTTTCGTAGGTGTAGCAATTTT 59.004 36.000 0.00 0.00 0.00 1.82
4051 4412 5.548406 ACTCTTTCGTAGGTGTAGCAATTT 58.452 37.500 0.00 0.00 0.00 1.82
4052 4413 5.148651 ACTCTTTCGTAGGTGTAGCAATT 57.851 39.130 0.00 0.00 0.00 2.32
4053 4414 4.803098 ACTCTTTCGTAGGTGTAGCAAT 57.197 40.909 0.00 0.00 0.00 3.56
4054 4415 4.280174 AGAACTCTTTCGTAGGTGTAGCAA 59.720 41.667 0.00 0.00 36.78 3.91
4055 4416 3.825014 AGAACTCTTTCGTAGGTGTAGCA 59.175 43.478 0.00 0.00 36.78 3.49
4056 4417 4.437772 AGAACTCTTTCGTAGGTGTAGC 57.562 45.455 0.00 0.00 36.78 3.58
4057 4418 5.121454 ACGTAGAACTCTTTCGTAGGTGTAG 59.879 44.000 7.52 0.00 36.78 2.74
4058 4419 4.997395 ACGTAGAACTCTTTCGTAGGTGTA 59.003 41.667 7.52 0.00 36.78 2.90
4059 4420 3.817647 ACGTAGAACTCTTTCGTAGGTGT 59.182 43.478 7.52 0.00 36.78 4.16
4060 4421 4.416505 ACGTAGAACTCTTTCGTAGGTG 57.583 45.455 7.52 0.00 36.78 4.00
4061 4422 5.295540 GGATACGTAGAACTCTTTCGTAGGT 59.704 44.000 16.08 6.54 39.15 3.08
4062 4423 5.526846 AGGATACGTAGAACTCTTTCGTAGG 59.473 44.000 16.08 0.00 46.39 3.18
4063 4424 6.601741 AGGATACGTAGAACTCTTTCGTAG 57.398 41.667 16.08 0.00 46.39 3.51
4064 4425 7.470289 GTAGGATACGTAGAACTCTTTCGTA 57.530 40.000 0.08 14.45 46.39 3.43
4065 4426 6.356757 GTAGGATACGTAGAACTCTTTCGT 57.643 41.667 0.08 11.98 46.39 3.85
4080 4441 4.033702 GCCAAGCAAGTTTACGTAGGATAC 59.966 45.833 0.00 0.00 38.50 2.24
4081 4442 4.186159 GCCAAGCAAGTTTACGTAGGATA 58.814 43.478 0.00 0.00 0.00 2.59
4082 4443 3.007635 GCCAAGCAAGTTTACGTAGGAT 58.992 45.455 0.00 0.00 0.00 3.24
4083 4444 2.419667 GCCAAGCAAGTTTACGTAGGA 58.580 47.619 0.00 0.00 0.00 2.94
4084 4445 1.467342 GGCCAAGCAAGTTTACGTAGG 59.533 52.381 0.00 0.00 0.00 3.18
4085 4446 2.423577 AGGCCAAGCAAGTTTACGTAG 58.576 47.619 5.01 0.00 0.00 3.51
4086 4447 2.554370 AGGCCAAGCAAGTTTACGTA 57.446 45.000 5.01 0.00 0.00 3.57
4087 4448 2.554370 TAGGCCAAGCAAGTTTACGT 57.446 45.000 5.01 0.00 0.00 3.57
4088 4449 3.561503 GTTTAGGCCAAGCAAGTTTACG 58.438 45.455 5.01 0.00 0.00 3.18
4089 4450 3.319689 TGGTTTAGGCCAAGCAAGTTTAC 59.680 43.478 5.01 0.00 35.25 2.01
4090 4451 3.567397 TGGTTTAGGCCAAGCAAGTTTA 58.433 40.909 5.01 0.00 35.25 2.01
4091 4452 2.393646 TGGTTTAGGCCAAGCAAGTTT 58.606 42.857 5.01 0.00 35.25 2.66
4092 4453 2.080654 TGGTTTAGGCCAAGCAAGTT 57.919 45.000 5.01 0.00 35.25 2.66
4093 4454 2.080654 TTGGTTTAGGCCAAGCAAGT 57.919 45.000 14.52 0.00 42.98 3.16
4480 4841 3.015145 TTAGTGAGGGGGCAGGGC 61.015 66.667 0.00 0.00 0.00 5.19
4481 4842 1.923395 TGTTAGTGAGGGGGCAGGG 60.923 63.158 0.00 0.00 0.00 4.45
4482 4843 1.299976 GTGTTAGTGAGGGGGCAGG 59.700 63.158 0.00 0.00 0.00 4.85
4483 4844 1.299976 GGTGTTAGTGAGGGGGCAG 59.700 63.158 0.00 0.00 0.00 4.85
4484 4845 2.228480 GGGTGTTAGTGAGGGGGCA 61.228 63.158 0.00 0.00 0.00 5.36
4485 4846 2.675371 GGGTGTTAGTGAGGGGGC 59.325 66.667 0.00 0.00 0.00 5.80
4486 4847 0.919289 ATGGGGTGTTAGTGAGGGGG 60.919 60.000 0.00 0.00 0.00 5.40
4487 4848 0.999712 AATGGGGTGTTAGTGAGGGG 59.000 55.000 0.00 0.00 0.00 4.79
4488 4849 4.310022 TTTAATGGGGTGTTAGTGAGGG 57.690 45.455 0.00 0.00 0.00 4.30
4489 4850 5.773176 AGTTTTTAATGGGGTGTTAGTGAGG 59.227 40.000 0.00 0.00 0.00 3.86
4490 4851 6.488683 TCAGTTTTTAATGGGGTGTTAGTGAG 59.511 38.462 0.00 0.00 0.00 3.51
4491 4852 6.263617 GTCAGTTTTTAATGGGGTGTTAGTGA 59.736 38.462 0.00 0.00 0.00 3.41
4492 4853 6.039941 TGTCAGTTTTTAATGGGGTGTTAGTG 59.960 38.462 0.00 0.00 0.00 2.74
4493 4854 6.130569 TGTCAGTTTTTAATGGGGTGTTAGT 58.869 36.000 0.00 0.00 0.00 2.24
4494 4855 6.642707 TGTCAGTTTTTAATGGGGTGTTAG 57.357 37.500 0.00 0.00 0.00 2.34
4495 4856 6.608002 ACTTGTCAGTTTTTAATGGGGTGTTA 59.392 34.615 0.00 0.00 0.00 2.41
4496 4857 5.423931 ACTTGTCAGTTTTTAATGGGGTGTT 59.576 36.000 0.00 0.00 0.00 3.32
4497 4858 4.959839 ACTTGTCAGTTTTTAATGGGGTGT 59.040 37.500 0.00 0.00 0.00 4.16
4498 4859 5.068460 TGACTTGTCAGTTTTTAATGGGGTG 59.932 40.000 0.00 0.00 31.22 4.61
4499 4860 5.205056 TGACTTGTCAGTTTTTAATGGGGT 58.795 37.500 0.00 0.00 31.22 4.95
4500 4861 5.782893 TGACTTGTCAGTTTTTAATGGGG 57.217 39.130 0.00 0.00 31.22 4.96
4518 4879 4.458397 TCGGACGGAGAAAGTATATGACT 58.542 43.478 0.00 0.00 41.56 3.41
4519 4880 4.825546 TCGGACGGAGAAAGTATATGAC 57.174 45.455 0.00 0.00 0.00 3.06
4520 4881 5.840243 TTTCGGACGGAGAAAGTATATGA 57.160 39.130 0.00 0.00 33.23 2.15
4521 4882 7.866393 AGTATTTTCGGACGGAGAAAGTATATG 59.134 37.037 7.55 0.00 38.61 1.78
4522 4883 7.949434 AGTATTTTCGGACGGAGAAAGTATAT 58.051 34.615 7.55 0.00 38.61 0.86
4523 4884 7.338800 AGTATTTTCGGACGGAGAAAGTATA 57.661 36.000 7.55 1.49 38.61 1.47
4524 4885 6.218108 AGTATTTTCGGACGGAGAAAGTAT 57.782 37.500 7.55 2.17 38.61 2.12
4525 4886 5.649782 AGTATTTTCGGACGGAGAAAGTA 57.350 39.130 0.00 0.00 38.61 2.24
4526 4887 4.532314 AGTATTTTCGGACGGAGAAAGT 57.468 40.909 0.00 0.00 38.61 2.66
4527 4888 4.689345 ACAAGTATTTTCGGACGGAGAAAG 59.311 41.667 0.00 0.00 38.61 2.62
4528 4889 4.634199 ACAAGTATTTTCGGACGGAGAAA 58.366 39.130 0.00 0.00 36.00 2.52
4529 4890 4.240096 GACAAGTATTTTCGGACGGAGAA 58.760 43.478 0.00 0.00 0.00 2.87
4530 4891 3.256383 TGACAAGTATTTTCGGACGGAGA 59.744 43.478 0.00 0.00 0.00 3.71
4531 4892 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
4532 4893 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
4533 4894 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
4534 4895 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
4535 4896 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
4536 4897 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
4537 4898 7.312154 TCCATTTTGATGACAAGTATTTTCGG 58.688 34.615 0.00 0.00 37.32 4.30
4538 4899 8.915871 ATCCATTTTGATGACAAGTATTTTCG 57.084 30.769 0.00 0.00 37.32 3.46
4565 4926 9.077885 TGGCAGTTTTCTAGATACATTCTTTTT 57.922 29.630 0.00 0.00 35.79 1.94
4566 4927 8.635765 TGGCAGTTTTCTAGATACATTCTTTT 57.364 30.769 0.00 0.00 35.79 2.27
4567 4928 8.635765 TTGGCAGTTTTCTAGATACATTCTTT 57.364 30.769 0.00 0.00 35.79 2.52
4568 4929 7.885399 ACTTGGCAGTTTTCTAGATACATTCTT 59.115 33.333 0.00 0.00 35.79 2.52
4569 4930 7.398024 ACTTGGCAGTTTTCTAGATACATTCT 58.602 34.615 0.00 0.00 38.57 2.40
4570 4931 7.334421 TGACTTGGCAGTTTTCTAGATACATTC 59.666 37.037 0.00 0.00 31.22 2.67
4571 4932 7.119846 GTGACTTGGCAGTTTTCTAGATACATT 59.880 37.037 0.00 0.00 31.22 2.71
4572 4933 6.595716 GTGACTTGGCAGTTTTCTAGATACAT 59.404 38.462 0.00 0.00 31.22 2.29
4573 4934 5.932303 GTGACTTGGCAGTTTTCTAGATACA 59.068 40.000 0.00 0.00 31.22 2.29
4574 4935 5.932303 TGTGACTTGGCAGTTTTCTAGATAC 59.068 40.000 0.00 0.00 31.22 2.24
4575 4936 6.109156 TGTGACTTGGCAGTTTTCTAGATA 57.891 37.500 0.00 0.00 31.22 1.98
4576 4937 4.973168 TGTGACTTGGCAGTTTTCTAGAT 58.027 39.130 0.00 0.00 31.22 1.98
4577 4938 4.415881 TGTGACTTGGCAGTTTTCTAGA 57.584 40.909 0.00 0.00 31.22 2.43
4578 4939 6.204688 TGTTATGTGACTTGGCAGTTTTCTAG 59.795 38.462 0.00 0.00 31.22 2.43
4579 4940 6.058833 TGTTATGTGACTTGGCAGTTTTCTA 58.941 36.000 0.00 0.00 31.22 2.10
4580 4941 4.887071 TGTTATGTGACTTGGCAGTTTTCT 59.113 37.500 0.00 0.00 31.22 2.52
4581 4942 5.181690 TGTTATGTGACTTGGCAGTTTTC 57.818 39.130 0.00 0.00 31.22 2.29
4582 4943 5.348164 GTTGTTATGTGACTTGGCAGTTTT 58.652 37.500 0.00 0.00 31.22 2.43
4583 4944 4.202111 GGTTGTTATGTGACTTGGCAGTTT 60.202 41.667 0.00 0.00 31.22 2.66
4584 4945 3.317993 GGTTGTTATGTGACTTGGCAGTT 59.682 43.478 0.00 0.00 31.22 3.16
4585 4946 2.884639 GGTTGTTATGTGACTTGGCAGT 59.115 45.455 0.00 0.00 35.17 4.40
4586 4947 2.884012 TGGTTGTTATGTGACTTGGCAG 59.116 45.455 0.00 0.00 0.00 4.85
4587 4948 2.884012 CTGGTTGTTATGTGACTTGGCA 59.116 45.455 0.00 0.00 0.00 4.92
4588 4949 2.351738 GCTGGTTGTTATGTGACTTGGC 60.352 50.000 0.00 0.00 0.00 4.52
4589 4950 2.884012 TGCTGGTTGTTATGTGACTTGG 59.116 45.455 0.00 0.00 0.00 3.61
4590 4951 4.022935 ACATGCTGGTTGTTATGTGACTTG 60.023 41.667 0.00 0.00 32.90 3.16
4591 4952 4.144297 ACATGCTGGTTGTTATGTGACTT 58.856 39.130 0.00 0.00 32.90 3.01
4592 4953 3.754965 ACATGCTGGTTGTTATGTGACT 58.245 40.909 0.00 0.00 32.90 3.41
4593 4954 4.094887 CCTACATGCTGGTTGTTATGTGAC 59.905 45.833 0.00 0.00 35.55 3.67
4594 4955 4.260985 CCTACATGCTGGTTGTTATGTGA 58.739 43.478 0.00 0.00 35.55 3.58
4595 4956 4.009675 ACCTACATGCTGGTTGTTATGTG 58.990 43.478 4.57 0.00 35.55 3.21
4596 4957 4.019321 AGACCTACATGCTGGTTGTTATGT 60.019 41.667 10.95 0.00 36.59 2.29
4597 4958 4.517285 AGACCTACATGCTGGTTGTTATG 58.483 43.478 10.95 0.00 36.59 1.90
4598 4959 4.844349 AGACCTACATGCTGGTTGTTAT 57.156 40.909 10.95 0.00 36.59 1.89
4599 4960 4.382685 GCTAGACCTACATGCTGGTTGTTA 60.383 45.833 10.95 5.13 36.59 2.41
4600 4961 3.619979 GCTAGACCTACATGCTGGTTGTT 60.620 47.826 10.95 4.39 36.59 2.83
4601 4962 2.093447 GCTAGACCTACATGCTGGTTGT 60.093 50.000 10.95 5.55 36.59 3.32
4602 4963 2.093500 TGCTAGACCTACATGCTGGTTG 60.093 50.000 10.95 6.76 36.59 3.77
4603 4964 2.187958 TGCTAGACCTACATGCTGGTT 58.812 47.619 10.95 5.17 36.59 3.67
4604 4965 1.866015 TGCTAGACCTACATGCTGGT 58.134 50.000 9.64 9.64 39.60 4.00
4605 4966 3.482156 AATGCTAGACCTACATGCTGG 57.518 47.619 0.00 0.00 0.00 4.85
4606 4967 5.207110 AGTAATGCTAGACCTACATGCTG 57.793 43.478 0.00 0.00 0.00 4.41
4607 4968 4.022762 CGAGTAATGCTAGACCTACATGCT 60.023 45.833 0.00 0.00 0.00 3.79
4608 4969 4.023107 TCGAGTAATGCTAGACCTACATGC 60.023 45.833 0.00 0.00 0.00 4.06
4609 4970 5.690997 TCGAGTAATGCTAGACCTACATG 57.309 43.478 0.00 0.00 0.00 3.21
4610 4971 6.710597 TTTCGAGTAATGCTAGACCTACAT 57.289 37.500 0.00 0.00 0.00 2.29
4611 4972 6.710597 ATTTCGAGTAATGCTAGACCTACA 57.289 37.500 0.00 0.00 0.00 2.74
4612 4973 7.808856 CCTTATTTCGAGTAATGCTAGACCTAC 59.191 40.741 0.00 0.00 0.00 3.18
4613 4974 7.039923 CCCTTATTTCGAGTAATGCTAGACCTA 60.040 40.741 0.00 0.00 0.00 3.08
4614 4975 6.239345 CCCTTATTTCGAGTAATGCTAGACCT 60.239 42.308 0.00 0.00 0.00 3.85
4615 4976 5.927115 CCCTTATTTCGAGTAATGCTAGACC 59.073 44.000 0.00 0.00 0.00 3.85
4616 4977 5.927115 CCCCTTATTTCGAGTAATGCTAGAC 59.073 44.000 0.00 0.00 0.00 2.59
4617 4978 5.836898 TCCCCTTATTTCGAGTAATGCTAGA 59.163 40.000 0.00 0.00 0.00 2.43
4618 4979 6.097915 TCCCCTTATTTCGAGTAATGCTAG 57.902 41.667 0.00 0.00 0.00 3.42
4619 4980 5.011738 CCTCCCCTTATTTCGAGTAATGCTA 59.988 44.000 0.00 0.00 0.00 3.49
4620 4981 4.202367 CCTCCCCTTATTTCGAGTAATGCT 60.202 45.833 0.00 0.00 0.00 3.79
4621 4982 4.065789 CCTCCCCTTATTTCGAGTAATGC 58.934 47.826 0.00 0.00 0.00 3.56
4622 4983 4.505039 CCCCTCCCCTTATTTCGAGTAATG 60.505 50.000 0.00 0.00 0.00 1.90
4623 4984 3.651423 CCCCTCCCCTTATTTCGAGTAAT 59.349 47.826 0.00 0.00 0.00 1.89
4624 4985 3.043418 CCCCTCCCCTTATTTCGAGTAA 58.957 50.000 0.00 0.00 0.00 2.24
4625 4986 2.686119 CCCCTCCCCTTATTTCGAGTA 58.314 52.381 0.00 0.00 0.00 2.59
4626 4987 1.508256 CCCCTCCCCTTATTTCGAGT 58.492 55.000 0.00 0.00 0.00 4.18
4627 4988 0.108774 GCCCCTCCCCTTATTTCGAG 59.891 60.000 0.00 0.00 0.00 4.04
4628 4989 1.350310 GGCCCCTCCCCTTATTTCGA 61.350 60.000 0.00 0.00 0.00 3.71
4629 4990 1.150764 GGCCCCTCCCCTTATTTCG 59.849 63.158 0.00 0.00 0.00 3.46
4644 5005 2.219449 ATTTCAACCGGGGTAGGGCC 62.219 60.000 6.32 0.00 35.02 5.80
4645 5006 0.750546 GATTTCAACCGGGGTAGGGC 60.751 60.000 6.32 0.00 35.02 5.19
4646 5007 0.621609 TGATTTCAACCGGGGTAGGG 59.378 55.000 6.32 0.00 35.02 3.53
4647 5008 1.408266 CCTGATTTCAACCGGGGTAGG 60.408 57.143 6.32 0.00 37.30 3.18
4648 5009 1.408266 CCCTGATTTCAACCGGGGTAG 60.408 57.143 6.32 0.00 42.72 3.18
4649 5010 0.621609 CCCTGATTTCAACCGGGGTA 59.378 55.000 6.32 0.00 42.72 3.69
4650 5011 1.382629 CCCTGATTTCAACCGGGGT 59.617 57.895 6.32 0.00 42.72 4.95
4651 5012 4.337013 CCCTGATTTCAACCGGGG 57.663 61.111 6.32 0.00 42.14 5.73
4652 5013 1.379843 CCCCCTGATTTCAACCGGG 60.380 63.158 6.32 0.00 34.62 5.73
4653 5014 2.052104 GCCCCCTGATTTCAACCGG 61.052 63.158 0.00 0.00 0.00 5.28
4654 5015 3.603365 GCCCCCTGATTTCAACCG 58.397 61.111 0.00 0.00 0.00 4.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.