Multiple sequence alignment - TraesCS2B01G357000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G357000 chr2B 100.000 3221 0 0 1 3221 510056559 510059779 0.000000e+00 5949.0
1 TraesCS2B01G357000 chr2B 88.511 853 65 10 1475 2322 510340146 510340970 0.000000e+00 1002.0
2 TraesCS2B01G357000 chr2B 94.809 366 14 3 2652 3013 510347142 510347506 1.680000e-157 566.0
3 TraesCS2B01G357000 chr2B 96.835 316 10 0 1475 1790 509688115 509688430 2.200000e-146 529.0
4 TraesCS2B01G357000 chr2B 87.158 475 30 14 2201 2652 509688663 509689129 7.970000e-141 510.0
5 TraesCS2B01G357000 chr2B 91.331 323 10 9 2307 2627 510346370 510346676 2.970000e-115 425.0
6 TraesCS2B01G357000 chr2B 95.652 230 10 0 1902 2131 509688433 509688662 1.410000e-98 370.0
7 TraesCS2B01G357000 chr2B 90.909 253 17 3 2971 3221 510347638 510347886 5.150000e-88 335.0
8 TraesCS2B01G357000 chr2B 91.489 235 20 0 1047 1281 509578782 509579016 1.110000e-84 324.0
9 TraesCS2B01G357000 chr2B 90.871 241 13 3 2855 3090 509702805 509703041 6.710000e-82 315.0
10 TraesCS2B01G357000 chr2B 92.647 204 15 0 1276 1479 509587576 509587779 8.740000e-76 294.0
11 TraesCS2B01G357000 chr2B 89.444 180 15 3 3045 3221 509994386 509994564 1.160000e-54 224.0
12 TraesCS2B01G357000 chr2B 88.889 180 16 3 3045 3221 509572272 509572450 5.410000e-53 219.0
13 TraesCS2B01G357000 chr2B 93.333 135 8 1 3087 3221 509703144 509703277 7.050000e-47 198.0
14 TraesCS2B01G357000 chr2B 93.333 105 7 0 2652 2756 509689164 509689268 4.300000e-34 156.0
15 TraesCS2B01G357000 chr2B 97.917 48 1 0 3034 3081 510347507 510347554 2.060000e-12 84.2
16 TraesCS2B01G357000 chr2D 94.500 1291 61 3 991 2277 431393540 431394824 0.000000e+00 1982.0
17 TraesCS2B01G357000 chr2D 90.120 668 51 3 991 1652 431018131 431018789 0.000000e+00 854.0
18 TraesCS2B01G357000 chr2D 93.243 444 20 5 2652 3090 431423797 431424235 0.000000e+00 645.0
19 TraesCS2B01G357000 chr2D 87.045 494 51 6 366 852 431386893 431387380 2.190000e-151 545.0
20 TraesCS2B01G357000 chr2D 87.990 383 19 6 2270 2652 431423407 431423762 8.260000e-116 427.0
21 TraesCS2B01G357000 chr2D 91.061 179 13 2 3045 3221 431380971 431381148 4.150000e-59 239.0
22 TraesCS2B01G357000 chr2D 88.950 181 15 3 3045 3221 431003030 431003209 5.410000e-53 219.0
23 TraesCS2B01G357000 chr2D 94.030 134 8 0 3088 3221 431424292 431424425 1.510000e-48 204.0
24 TraesCS2B01G357000 chr2D 93.636 110 7 0 858 967 431017727 431017836 7.150000e-37 165.0
25 TraesCS2B01G357000 chr2D 91.743 109 9 0 859 967 431387522 431387630 5.570000e-33 152.0
26 TraesCS2B01G357000 chr3B 95.568 361 16 0 1 361 212452062 212452422 2.150000e-161 579.0
27 TraesCS2B01G357000 chr3B 94.766 363 18 1 1 362 830285301 830285663 6.030000e-157 564.0
28 TraesCS2B01G357000 chr3B 94.215 363 20 1 1 362 830559259 830559621 1.310000e-153 553.0
29 TraesCS2B01G357000 chr7B 95.238 357 17 0 1 357 748394744 748394388 1.680000e-157 566.0
30 TraesCS2B01G357000 chr7B 94.382 356 20 0 1 356 593020272 593019917 6.080000e-152 547.0
31 TraesCS2B01G357000 chr7B 85.944 498 64 4 368 860 743535893 743535397 7.910000e-146 527.0
32 TraesCS2B01G357000 chr6B 86.561 506 66 2 359 863 530132966 530132462 1.010000e-154 556.0
33 TraesCS2B01G357000 chr6B 94.382 356 20 0 1 356 247746086 247745731 6.080000e-152 547.0
34 TraesCS2B01G357000 chr6B 94.382 356 14 1 1 356 280680357 280680008 2.830000e-150 542.0
35 TraesCS2B01G357000 chr5B 94.663 356 19 0 1 356 65116089 65115734 1.310000e-153 553.0
36 TraesCS2B01G357000 chr5B 94.398 357 20 0 1 357 530907682 530908038 1.690000e-152 549.0
37 TraesCS2B01G357000 chr5B 86.400 500 60 5 361 860 494293572 494294063 1.020000e-149 540.0
38 TraesCS2B01G357000 chr5B 83.633 501 68 6 359 859 18351969 18352455 2.930000e-125 459.0
39 TraesCS2B01G357000 chr2A 86.193 507 61 6 359 860 49810003 49809501 1.020000e-149 540.0
40 TraesCS2B01G357000 chr2A 85.027 374 28 6 2872 3221 554956195 554955826 3.950000e-94 355.0
41 TraesCS2B01G357000 chr1A 85.913 504 61 9 359 860 366127164 366126669 2.200000e-146 529.0
42 TraesCS2B01G357000 chr6D 85.141 498 68 3 359 855 43638059 43638551 3.710000e-139 505.0
43 TraesCS2B01G357000 chr5A 83.466 502 77 4 359 860 378484635 378484140 2.260000e-126 462.0
44 TraesCS2B01G357000 chr7D 81.980 505 65 12 359 860 111350755 111351236 3.870000e-109 405.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G357000 chr2B 510056559 510059779 3220 False 5949.000000 5949 100.000000 1 3221 1 chr2B.!!$F5 3220
1 TraesCS2B01G357000 chr2B 510340146 510340970 824 False 1002.000000 1002 88.511000 1475 2322 1 chr2B.!!$F6 847
2 TraesCS2B01G357000 chr2B 509688115 509689268 1153 False 391.250000 529 93.244500 1475 2756 4 chr2B.!!$F7 1281
3 TraesCS2B01G357000 chr2B 510346370 510347886 1516 False 352.550000 566 93.741500 2307 3221 4 chr2B.!!$F9 914
4 TraesCS2B01G357000 chr2D 431393540 431394824 1284 False 1982.000000 1982 94.500000 991 2277 1 chr2D.!!$F3 1286
5 TraesCS2B01G357000 chr2D 431017727 431018789 1062 False 509.500000 854 91.878000 858 1652 2 chr2D.!!$F4 794
6 TraesCS2B01G357000 chr2D 431423407 431424425 1018 False 425.333333 645 91.754333 2270 3221 3 chr2D.!!$F6 951
7 TraesCS2B01G357000 chr2D 431386893 431387630 737 False 348.500000 545 89.394000 366 967 2 chr2D.!!$F5 601
8 TraesCS2B01G357000 chr6B 530132462 530132966 504 True 556.000000 556 86.561000 359 863 1 chr6B.!!$R3 504
9 TraesCS2B01G357000 chr2A 49809501 49810003 502 True 540.000000 540 86.193000 359 860 1 chr2A.!!$R1 501

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
288 289 0.102481 GCCAGCGCTACTGCTAGTTA 59.898 55.000 10.99 0.0 45.23 2.24 F
614 615 0.179029 CCACCAAAGTCCTCCACGTT 60.179 55.000 0.00 0.0 0.00 3.99 F
617 621 0.535102 CCAAAGTCCTCCACGTTGCT 60.535 55.000 0.00 0.0 41.66 3.91 F
988 1330 1.069090 TGACGAAGCAAGAAGGCGT 59.931 52.632 0.00 0.0 39.27 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1870 2293 0.395311 AAGCACTGAGATGGCATGGG 60.395 55.000 3.81 0.0 0.0 4.00 R
2008 2431 1.662608 CGCCACTGACAGACTGACT 59.337 57.895 10.08 0.0 0.0 3.41 R
2044 2467 1.798813 CCGCTCGCCCATAAAATAGAC 59.201 52.381 0.00 0.0 0.0 2.59 R
2750 3643 1.814394 TGTGCAAGAGAATGGTGATGC 59.186 47.619 0.00 0.0 0.0 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.266510 AGTGCTTGTCAAAGTGTGAGA 57.733 42.857 0.00 0.00 36.74 3.27
22 23 3.609853 AGTGCTTGTCAAAGTGTGAGAA 58.390 40.909 0.00 0.00 37.18 2.87
31 32 8.902540 TTGTCAAAGTGTGAGAAGTAACATAT 57.097 30.769 0.00 0.00 34.72 1.78
32 33 8.902540 TGTCAAAGTGTGAGAAGTAACATATT 57.097 30.769 0.00 0.00 36.74 1.28
33 34 9.337396 TGTCAAAGTGTGAGAAGTAACATATTT 57.663 29.630 0.00 0.00 36.74 1.40
39 40 9.436957 AGTGTGAGAAGTAACATATTTAAGGTG 57.563 33.333 0.00 0.00 0.00 4.00
40 41 8.665685 GTGTGAGAAGTAACATATTTAAGGTGG 58.334 37.037 0.00 0.00 0.00 4.61
41 42 8.380099 TGTGAGAAGTAACATATTTAAGGTGGT 58.620 33.333 0.00 0.00 0.00 4.16
42 43 9.880157 GTGAGAAGTAACATATTTAAGGTGGTA 57.120 33.333 0.00 0.00 0.00 3.25
56 57 9.668497 ATTTAAGGTGGTATAAACTCTCTTCAC 57.332 33.333 0.00 0.00 0.00 3.18
57 58 5.326200 AGGTGGTATAAACTCTCTTCACG 57.674 43.478 0.00 0.00 0.00 4.35
58 59 4.159879 AGGTGGTATAAACTCTCTTCACGG 59.840 45.833 0.00 0.00 0.00 4.94
59 60 4.159135 GGTGGTATAAACTCTCTTCACGGA 59.841 45.833 0.00 0.00 0.00 4.69
60 61 5.341617 GTGGTATAAACTCTCTTCACGGAG 58.658 45.833 0.00 0.00 35.86 4.63
61 62 4.142227 TGGTATAAACTCTCTTCACGGAGC 60.142 45.833 0.00 0.00 33.70 4.70
62 63 2.631418 TAAACTCTCTTCACGGAGCG 57.369 50.000 0.00 0.00 33.70 5.03
63 64 0.959553 AAACTCTCTTCACGGAGCGA 59.040 50.000 0.00 0.00 33.70 4.93
64 65 0.523966 AACTCTCTTCACGGAGCGAG 59.476 55.000 0.00 0.00 35.23 5.03
65 66 1.309499 ACTCTCTTCACGGAGCGAGG 61.309 60.000 0.00 0.00 33.78 4.63
66 67 1.303398 TCTCTTCACGGAGCGAGGT 60.303 57.895 0.00 0.00 33.70 3.85
67 68 1.153939 CTCTTCACGGAGCGAGGTG 60.154 63.158 0.00 0.00 35.50 4.00
68 69 2.125912 CTTCACGGAGCGAGGTGG 60.126 66.667 0.00 0.00 34.93 4.61
69 70 3.649277 CTTCACGGAGCGAGGTGGG 62.649 68.421 0.00 0.00 34.93 4.61
70 71 4.671590 TCACGGAGCGAGGTGGGA 62.672 66.667 0.00 0.00 34.93 4.37
71 72 4.436998 CACGGAGCGAGGTGGGAC 62.437 72.222 0.00 0.00 0.00 4.46
72 73 4.680537 ACGGAGCGAGGTGGGACT 62.681 66.667 0.00 0.00 0.00 3.85
73 74 2.439701 CGGAGCGAGGTGGGACTA 60.440 66.667 0.00 0.00 0.00 2.59
74 75 2.050350 CGGAGCGAGGTGGGACTAA 61.050 63.158 0.00 0.00 0.00 2.24
75 76 1.601419 CGGAGCGAGGTGGGACTAAA 61.601 60.000 0.00 0.00 0.00 1.85
76 77 0.831307 GGAGCGAGGTGGGACTAAAT 59.169 55.000 0.00 0.00 0.00 1.40
77 78 1.209747 GGAGCGAGGTGGGACTAAATT 59.790 52.381 0.00 0.00 0.00 1.82
78 79 2.355818 GGAGCGAGGTGGGACTAAATTT 60.356 50.000 0.00 0.00 0.00 1.82
79 80 3.344515 GAGCGAGGTGGGACTAAATTTT 58.655 45.455 0.00 0.00 0.00 1.82
80 81 3.756963 GAGCGAGGTGGGACTAAATTTTT 59.243 43.478 0.00 0.00 0.00 1.94
81 82 3.506067 AGCGAGGTGGGACTAAATTTTTG 59.494 43.478 0.00 0.00 0.00 2.44
82 83 3.254903 GCGAGGTGGGACTAAATTTTTGT 59.745 43.478 0.00 0.00 0.00 2.83
83 84 4.456566 GCGAGGTGGGACTAAATTTTTGTA 59.543 41.667 0.00 0.00 0.00 2.41
84 85 5.391629 GCGAGGTGGGACTAAATTTTTGTAG 60.392 44.000 0.00 0.00 0.00 2.74
85 86 5.123344 CGAGGTGGGACTAAATTTTTGTAGG 59.877 44.000 0.00 0.00 0.00 3.18
86 87 6.208840 AGGTGGGACTAAATTTTTGTAGGA 57.791 37.500 0.00 0.00 0.00 2.94
87 88 6.616577 AGGTGGGACTAAATTTTTGTAGGAA 58.383 36.000 0.00 0.00 0.00 3.36
88 89 7.070629 AGGTGGGACTAAATTTTTGTAGGAAA 58.929 34.615 0.00 0.00 0.00 3.13
89 90 7.014905 AGGTGGGACTAAATTTTTGTAGGAAAC 59.985 37.037 0.00 0.00 0.00 2.78
91 92 8.418662 GTGGGACTAAATTTTTGTAGGAAACTT 58.581 33.333 0.00 0.00 43.67 2.66
92 93 9.643735 TGGGACTAAATTTTTGTAGGAAACTTA 57.356 29.630 0.00 0.00 43.67 2.24
94 95 9.622004 GGACTAAATTTTTGTAGGAAACTTAGC 57.378 33.333 0.00 0.00 43.67 3.09
100 101 6.796705 TTTTGTAGGAAACTTAGCAGTAGC 57.203 37.500 0.00 0.00 43.67 3.58
101 102 4.106029 TGTAGGAAACTTAGCAGTAGCG 57.894 45.455 0.00 0.00 44.28 4.26
102 103 2.011540 AGGAAACTTAGCAGTAGCGC 57.988 50.000 0.00 0.00 42.62 5.92
103 104 1.550976 AGGAAACTTAGCAGTAGCGCT 59.449 47.619 17.26 17.26 42.62 5.92
104 105 2.028020 AGGAAACTTAGCAGTAGCGCTT 60.028 45.455 18.68 0.00 42.62 4.68
105 106 4.169875 AGGAAACTTAGCAGTAGCGCTTG 61.170 47.826 18.68 10.60 42.62 4.01
106 107 6.601224 AGGAAACTTAGCAGTAGCGCTTGT 62.601 45.833 18.68 0.00 42.62 3.16
107 108 7.298323 AGGAAACTTAGCAGTAGCGCTTGTA 62.298 44.000 18.68 0.00 42.62 2.41
108 109 8.521370 AGGAAACTTAGCAGTAGCGCTTGTAT 62.521 42.308 18.68 4.68 42.62 2.29
111 112 2.311294 GCAGTAGCGCTTGTATGGG 58.689 57.895 18.68 0.00 0.00 4.00
112 113 0.179084 GCAGTAGCGCTTGTATGGGA 60.179 55.000 18.68 0.00 0.00 4.37
113 114 1.742411 GCAGTAGCGCTTGTATGGGAA 60.742 52.381 18.68 0.00 0.00 3.97
114 115 2.627945 CAGTAGCGCTTGTATGGGAAA 58.372 47.619 18.68 0.00 0.00 3.13
115 116 3.206150 CAGTAGCGCTTGTATGGGAAAT 58.794 45.455 18.68 0.00 0.00 2.17
116 117 3.002656 CAGTAGCGCTTGTATGGGAAATG 59.997 47.826 18.68 0.00 0.00 2.32
117 118 0.740737 AGCGCTTGTATGGGAAATGC 59.259 50.000 2.64 0.00 0.00 3.56
118 119 0.592247 GCGCTTGTATGGGAAATGCG 60.592 55.000 0.00 0.00 43.91 4.73
119 120 0.592247 CGCTTGTATGGGAAATGCGC 60.592 55.000 0.00 0.00 35.77 6.09
120 121 0.740737 GCTTGTATGGGAAATGCGCT 59.259 50.000 9.73 0.00 0.00 5.92
121 122 1.534595 GCTTGTATGGGAAATGCGCTG 60.535 52.381 9.73 0.00 0.00 5.18
122 123 0.455410 TTGTATGGGAAATGCGCTGC 59.545 50.000 9.73 0.00 0.00 5.25
123 124 0.394216 TGTATGGGAAATGCGCTGCT 60.394 50.000 9.73 0.00 0.00 4.24
124 125 1.134250 TGTATGGGAAATGCGCTGCTA 60.134 47.619 9.73 0.00 0.00 3.49
125 126 1.264288 GTATGGGAAATGCGCTGCTAC 59.736 52.381 9.73 0.00 0.00 3.58
126 127 0.107017 ATGGGAAATGCGCTGCTACT 60.107 50.000 9.73 0.00 0.00 2.57
127 128 0.539518 TGGGAAATGCGCTGCTACTA 59.460 50.000 9.73 0.00 0.00 1.82
128 129 0.938008 GGGAAATGCGCTGCTACTAC 59.062 55.000 9.73 0.00 0.00 2.73
129 130 0.577269 GGAAATGCGCTGCTACTACG 59.423 55.000 9.73 0.00 0.00 3.51
134 135 4.191111 CGCTGCTACTACGCTACG 57.809 61.111 0.00 0.00 0.00 3.51
135 136 1.351012 CGCTGCTACTACGCTACGT 59.649 57.895 0.00 0.00 44.35 3.57
136 137 0.578683 CGCTGCTACTACGCTACGTA 59.421 55.000 0.00 0.00 41.54 3.57
156 157 4.695231 AGTAGCGCGCGTCGTGTT 62.695 61.111 32.35 8.96 39.70 3.32
157 158 2.871080 GTAGCGCGCGTCGTGTTA 60.871 61.111 32.35 7.77 39.70 2.41
158 159 2.126927 TAGCGCGCGTCGTGTTAA 60.127 55.556 32.35 5.08 39.70 2.01
159 160 2.427765 TAGCGCGCGTCGTGTTAAC 61.428 57.895 32.35 11.09 39.70 2.01
168 169 4.093836 CGTGTTAACGCGTTGCTG 57.906 55.556 33.40 17.48 43.98 4.41
169 170 2.067039 CGTGTTAACGCGTTGCTGC 61.067 57.895 33.40 19.50 43.98 5.25
170 171 1.278637 GTGTTAACGCGTTGCTGCT 59.721 52.632 33.40 9.63 0.00 4.24
171 172 0.509499 GTGTTAACGCGTTGCTGCTA 59.491 50.000 33.40 10.49 0.00 3.49
172 173 1.127951 GTGTTAACGCGTTGCTGCTAT 59.872 47.619 33.40 7.98 0.00 2.97
173 174 2.346244 GTGTTAACGCGTTGCTGCTATA 59.654 45.455 33.40 8.85 0.00 1.31
174 175 2.994578 TGTTAACGCGTTGCTGCTATAA 59.005 40.909 33.40 14.74 0.00 0.98
175 176 3.181528 TGTTAACGCGTTGCTGCTATAAC 60.182 43.478 33.40 24.73 35.70 1.89
176 177 1.722011 AACGCGTTGCTGCTATAACT 58.278 45.000 26.00 0.00 0.00 2.24
177 178 2.572191 ACGCGTTGCTGCTATAACTA 57.428 45.000 5.58 0.00 0.00 2.24
178 179 2.460918 ACGCGTTGCTGCTATAACTAG 58.539 47.619 5.58 0.00 0.00 2.57
186 187 3.403276 GCTATAACTAGCCTCGCGG 57.597 57.895 6.13 0.00 43.90 6.46
201 202 3.912907 CGGCGGCCTCGTAGGAAT 61.913 66.667 18.34 0.00 37.67 3.01
202 203 2.504519 GGCGGCCTCGTAGGAATT 59.495 61.111 12.87 0.00 37.67 2.17
203 204 1.744014 GGCGGCCTCGTAGGAATTA 59.256 57.895 12.87 0.00 37.67 1.40
204 205 0.320697 GGCGGCCTCGTAGGAATTAT 59.679 55.000 12.87 0.00 37.67 1.28
205 206 1.547372 GGCGGCCTCGTAGGAATTATA 59.453 52.381 12.87 0.00 37.67 0.98
206 207 2.416972 GGCGGCCTCGTAGGAATTATAG 60.417 54.545 12.87 0.00 37.67 1.31
207 208 2.877335 CGGCCTCGTAGGAATTATAGC 58.123 52.381 0.00 0.00 37.67 2.97
208 209 2.230508 CGGCCTCGTAGGAATTATAGCA 59.769 50.000 0.00 0.00 37.67 3.49
209 210 3.673594 CGGCCTCGTAGGAATTATAGCAG 60.674 52.174 0.00 0.00 37.67 4.24
210 211 3.254892 GCCTCGTAGGAATTATAGCAGC 58.745 50.000 5.24 0.00 37.67 5.25
211 212 3.306088 GCCTCGTAGGAATTATAGCAGCA 60.306 47.826 0.00 0.00 37.67 4.41
212 213 4.489810 CCTCGTAGGAATTATAGCAGCAG 58.510 47.826 0.00 0.00 37.67 4.24
213 214 3.914312 TCGTAGGAATTATAGCAGCAGC 58.086 45.455 0.00 0.00 42.56 5.25
223 224 4.748679 GCAGCAGCGCGTCTTTGG 62.749 66.667 8.43 0.00 0.00 3.28
224 225 4.093952 CAGCAGCGCGTCTTTGGG 62.094 66.667 8.43 0.00 0.00 4.12
241 242 4.547905 GCGGACGCGCTACTGCTA 62.548 66.667 21.31 0.00 36.97 3.49
242 243 2.331805 CGGACGCGCTACTGCTAT 59.668 61.111 5.73 0.00 36.97 2.97
243 244 2.011349 CGGACGCGCTACTGCTATG 61.011 63.158 5.73 0.00 36.97 2.23
244 245 1.065928 GGACGCGCTACTGCTATGT 59.934 57.895 5.73 0.00 36.97 2.29
245 246 0.527817 GGACGCGCTACTGCTATGTT 60.528 55.000 5.73 0.00 36.97 2.71
246 247 1.278238 GACGCGCTACTGCTATGTTT 58.722 50.000 5.73 0.00 36.97 2.83
247 248 0.999406 ACGCGCTACTGCTATGTTTG 59.001 50.000 5.73 0.00 36.97 2.93
248 249 0.999406 CGCGCTACTGCTATGTTTGT 59.001 50.000 5.56 0.00 36.97 2.83
249 250 2.190161 CGCGCTACTGCTATGTTTGTA 58.810 47.619 5.56 0.00 36.97 2.41
250 251 2.794910 CGCGCTACTGCTATGTTTGTAT 59.205 45.455 5.56 0.00 36.97 2.29
251 252 3.121328 CGCGCTACTGCTATGTTTGTATC 60.121 47.826 5.56 0.00 36.97 2.24
252 253 3.802139 GCGCTACTGCTATGTTTGTATCA 59.198 43.478 0.00 0.00 36.97 2.15
253 254 4.084849 GCGCTACTGCTATGTTTGTATCAG 60.085 45.833 0.00 0.00 36.97 2.90
254 255 4.084849 CGCTACTGCTATGTTTGTATCAGC 60.085 45.833 0.00 0.00 36.97 4.26
255 256 4.811024 GCTACTGCTATGTTTGTATCAGCA 59.189 41.667 0.00 0.00 39.79 4.41
258 259 2.609002 TGCTATGTTTGTATCAGCAGCG 59.391 45.455 0.00 0.00 37.32 5.18
259 260 2.866156 GCTATGTTTGTATCAGCAGCGA 59.134 45.455 0.00 0.00 32.46 4.93
260 261 3.060003 GCTATGTTTGTATCAGCAGCGAG 60.060 47.826 0.00 0.00 32.46 5.03
261 262 2.455674 TGTTTGTATCAGCAGCGAGT 57.544 45.000 0.00 0.00 0.00 4.18
262 263 2.766313 TGTTTGTATCAGCAGCGAGTT 58.234 42.857 0.00 0.00 0.00 3.01
263 264 3.138304 TGTTTGTATCAGCAGCGAGTTT 58.862 40.909 0.00 0.00 0.00 2.66
264 265 3.186409 TGTTTGTATCAGCAGCGAGTTTC 59.814 43.478 0.00 0.00 0.00 2.78
265 266 2.010145 TGTATCAGCAGCGAGTTTCC 57.990 50.000 0.00 0.00 0.00 3.13
266 267 0.924090 GTATCAGCAGCGAGTTTCCG 59.076 55.000 0.00 0.00 0.00 4.30
274 275 3.793144 CGAGTTTCCGCAGCCAGC 61.793 66.667 0.00 0.00 40.87 4.85
284 285 2.496341 CAGCCAGCGCTACTGCTA 59.504 61.111 22.81 0.00 46.25 3.49
285 286 1.591059 CAGCCAGCGCTACTGCTAG 60.591 63.158 22.81 15.27 46.25 3.42
286 287 2.055042 AGCCAGCGCTACTGCTAGT 61.055 57.895 22.21 3.86 46.08 2.57
287 288 1.153549 GCCAGCGCTACTGCTAGTT 60.154 57.895 10.99 0.00 45.23 2.24
288 289 0.102481 GCCAGCGCTACTGCTAGTTA 59.898 55.000 10.99 0.00 45.23 2.24
289 290 1.866063 GCCAGCGCTACTGCTAGTTAG 60.866 57.143 10.99 0.00 45.23 2.34
290 291 1.405821 CCAGCGCTACTGCTAGTTAGT 59.594 52.381 10.99 6.94 45.23 2.24
291 292 2.617308 CCAGCGCTACTGCTAGTTAGTA 59.383 50.000 10.99 8.20 45.23 1.82
292 293 3.304123 CCAGCGCTACTGCTAGTTAGTAG 60.304 52.174 21.99 21.99 45.23 2.57
306 307 7.988904 CTAGTTAGTAGCAGCGAGTTATTTT 57.011 36.000 0.00 0.00 0.00 1.82
307 308 6.648725 AGTTAGTAGCAGCGAGTTATTTTG 57.351 37.500 0.00 0.00 0.00 2.44
308 309 5.581085 AGTTAGTAGCAGCGAGTTATTTTGG 59.419 40.000 0.00 0.00 0.00 3.28
309 310 3.270877 AGTAGCAGCGAGTTATTTTGGG 58.729 45.455 0.00 0.00 0.00 4.12
310 311 2.489938 AGCAGCGAGTTATTTTGGGA 57.510 45.000 0.00 0.00 0.00 4.37
311 312 2.084546 AGCAGCGAGTTATTTTGGGAC 58.915 47.619 0.00 0.00 0.00 4.46
312 313 1.202031 GCAGCGAGTTATTTTGGGACG 60.202 52.381 0.00 0.00 0.00 4.79
313 314 1.084289 AGCGAGTTATTTTGGGACGC 58.916 50.000 0.00 0.00 43.84 5.19
314 315 0.247537 GCGAGTTATTTTGGGACGCG 60.248 55.000 3.53 3.53 39.13 6.01
315 316 0.247537 CGAGTTATTTTGGGACGCGC 60.248 55.000 5.73 0.00 30.63 6.86
316 317 1.084289 GAGTTATTTTGGGACGCGCT 58.916 50.000 5.73 0.00 0.00 5.92
317 318 0.802494 AGTTATTTTGGGACGCGCTG 59.198 50.000 5.73 1.02 0.00 5.18
318 319 0.796870 GTTATTTTGGGACGCGCTGC 60.797 55.000 5.73 0.00 0.00 5.25
319 320 0.958382 TTATTTTGGGACGCGCTGCT 60.958 50.000 5.73 0.00 0.00 4.24
320 321 1.643868 TATTTTGGGACGCGCTGCTG 61.644 55.000 5.73 0.00 0.00 4.41
321 322 3.969710 TATTTTGGGACGCGCTGCTGA 62.970 52.381 5.73 0.00 0.00 4.26
322 323 3.899981 TTTGGGACGCGCTGCTGAT 62.900 57.895 5.73 0.00 0.00 2.90
323 324 2.514510 TTTGGGACGCGCTGCTGATA 62.515 55.000 5.73 0.00 0.00 2.15
324 325 2.202878 GGGACGCGCTGCTGATAA 60.203 61.111 5.73 0.00 0.00 1.75
325 326 2.240500 GGGACGCGCTGCTGATAAG 61.241 63.158 5.73 0.00 0.00 1.73
326 327 1.226974 GGACGCGCTGCTGATAAGA 60.227 57.895 5.73 0.00 0.00 2.10
327 328 0.598680 GGACGCGCTGCTGATAAGAT 60.599 55.000 5.73 0.00 0.00 2.40
328 329 1.212616 GACGCGCTGCTGATAAGATT 58.787 50.000 5.73 0.00 0.00 2.40
329 330 1.191204 GACGCGCTGCTGATAAGATTC 59.809 52.381 5.73 0.00 0.00 2.52
330 331 1.202463 ACGCGCTGCTGATAAGATTCT 60.202 47.619 5.73 0.00 0.00 2.40
331 332 1.191868 CGCGCTGCTGATAAGATTCTG 59.808 52.381 5.56 0.00 0.00 3.02
332 333 2.208431 GCGCTGCTGATAAGATTCTGT 58.792 47.619 0.00 0.00 0.00 3.41
333 334 2.033065 GCGCTGCTGATAAGATTCTGTG 60.033 50.000 0.00 0.00 0.00 3.66
334 335 3.193263 CGCTGCTGATAAGATTCTGTGT 58.807 45.455 0.00 0.00 0.00 3.72
335 336 4.363138 CGCTGCTGATAAGATTCTGTGTA 58.637 43.478 0.00 0.00 0.00 2.90
336 337 4.987285 CGCTGCTGATAAGATTCTGTGTAT 59.013 41.667 0.00 0.00 0.00 2.29
337 338 6.152379 CGCTGCTGATAAGATTCTGTGTATA 58.848 40.000 0.00 0.00 0.00 1.47
338 339 6.307558 CGCTGCTGATAAGATTCTGTGTATAG 59.692 42.308 0.00 0.00 0.00 1.31
339 340 7.374272 GCTGCTGATAAGATTCTGTGTATAGA 58.626 38.462 0.00 0.00 0.00 1.98
340 341 7.328249 GCTGCTGATAAGATTCTGTGTATAGAC 59.672 40.741 0.00 0.00 0.00 2.59
341 342 8.470657 TGCTGATAAGATTCTGTGTATAGACT 57.529 34.615 1.30 0.00 0.00 3.24
342 343 8.918116 TGCTGATAAGATTCTGTGTATAGACTT 58.082 33.333 1.30 0.00 0.00 3.01
343 344 9.757227 GCTGATAAGATTCTGTGTATAGACTTT 57.243 33.333 1.30 0.00 0.00 2.66
348 349 7.741554 AGATTCTGTGTATAGACTTTTCCCT 57.258 36.000 1.30 0.00 0.00 4.20
349 350 8.840200 AGATTCTGTGTATAGACTTTTCCCTA 57.160 34.615 1.30 0.00 0.00 3.53
350 351 8.919145 AGATTCTGTGTATAGACTTTTCCCTAG 58.081 37.037 1.30 0.00 0.00 3.02
351 352 8.611051 ATTCTGTGTATAGACTTTTCCCTAGT 57.389 34.615 1.30 0.00 0.00 2.57
352 353 9.710818 ATTCTGTGTATAGACTTTTCCCTAGTA 57.289 33.333 1.30 0.00 0.00 1.82
353 354 8.749026 TCTGTGTATAGACTTTTCCCTAGTAG 57.251 38.462 1.30 0.00 0.00 2.57
354 355 8.334734 TCTGTGTATAGACTTTTCCCTAGTAGT 58.665 37.037 1.30 0.00 0.00 2.73
355 356 8.289939 TGTGTATAGACTTTTCCCTAGTAGTG 57.710 38.462 1.30 0.00 0.00 2.74
356 357 8.111545 TGTGTATAGACTTTTCCCTAGTAGTGA 58.888 37.037 1.30 0.00 0.00 3.41
357 358 8.964772 GTGTATAGACTTTTCCCTAGTAGTGAA 58.035 37.037 0.00 0.00 0.00 3.18
364 365 7.015064 ACTTTTCCCTAGTAGTGAAAGGTCTA 58.985 38.462 14.39 0.00 34.46 2.59
432 433 4.812476 CGCCATCGCCGGTCTTGA 62.812 66.667 1.90 0.00 0.00 3.02
473 474 3.606662 CACCCGGATCCGCTCGAT 61.607 66.667 29.12 8.27 38.24 3.59
487 488 1.410517 GCTCGATGAACCTCCATCTCA 59.589 52.381 0.00 0.00 40.46 3.27
495 496 1.852633 ACCTCCATCTCACATCGTGA 58.147 50.000 0.00 0.00 40.50 4.35
506 507 1.807165 CATCGTGAGCACAGACCGG 60.807 63.158 0.00 0.00 0.00 5.28
516 517 3.449227 CAGACCGGCACCGAGCTA 61.449 66.667 11.42 0.00 44.79 3.32
518 519 3.755628 GACCGGCACCGAGCTACA 61.756 66.667 11.42 0.00 44.79 2.74
542 543 3.570638 CGGAGCGAGCAAGCCATG 61.571 66.667 0.00 0.00 38.01 3.66
613 614 1.052124 TCCACCAAAGTCCTCCACGT 61.052 55.000 0.00 0.00 0.00 4.49
614 615 0.179029 CCACCAAAGTCCTCCACGTT 60.179 55.000 0.00 0.00 0.00 3.99
617 621 0.535102 CCAAAGTCCTCCACGTTGCT 60.535 55.000 0.00 0.00 41.66 3.91
621 625 3.555324 TCCTCCACGTTGCTGCCA 61.555 61.111 0.00 0.00 0.00 4.92
626 630 2.267351 CCACGTTGCTGCCAATCCA 61.267 57.895 0.00 0.00 32.75 3.41
638 642 1.080569 CAATCCAAGGTGCCGCAAC 60.081 57.895 0.00 0.00 0.00 4.17
868 1011 3.458189 CGGCTAAGGTTGGAGTTCATAG 58.542 50.000 0.00 0.00 0.00 2.23
971 1114 7.220741 AGGCGAGCCTGTATATATATATGTG 57.779 40.000 16.83 5.36 46.22 3.21
973 1116 7.040340 AGGCGAGCCTGTATATATATATGTGAC 60.040 40.741 16.83 6.38 46.22 3.67
974 1117 6.797513 GCGAGCCTGTATATATATATGTGACG 59.202 42.308 14.42 11.17 0.00 4.35
985 1327 9.809096 ATATATATATGTGACGAAGCAAGAAGG 57.191 33.333 4.37 0.00 0.00 3.46
986 1328 1.160137 ATGTGACGAAGCAAGAAGGC 58.840 50.000 0.00 0.00 0.00 4.35
988 1330 1.069090 TGACGAAGCAAGAAGGCGT 59.931 52.632 0.00 0.00 39.27 5.68
1104 1524 2.515523 CTCCGCCAGATGCTTGGG 60.516 66.667 4.95 0.00 38.72 4.12
1220 1640 2.956194 CATCTGCGCTGTTTGCCA 59.044 55.556 9.73 0.00 38.78 4.92
1333 1753 1.354506 GCAGTTCATCGCATGCCTC 59.645 57.895 13.15 0.00 32.49 4.70
1431 1851 1.684049 CCTCGTGAGCCCTTCCTCT 60.684 63.158 0.00 0.00 33.02 3.69
1659 2079 2.885135 TGGACATTGCACTCTTCCAT 57.115 45.000 2.13 0.00 31.19 3.41
1776 2199 3.978217 GCATACAGAGAACGCATAGAGAC 59.022 47.826 0.00 0.00 0.00 3.36
1821 2244 2.613506 CCTTGTGGCGTCCGGAAAC 61.614 63.158 5.23 0.00 0.00 2.78
1870 2293 2.671177 CCGCATCCCATCGATTCGC 61.671 63.158 0.00 0.00 36.44 4.70
1998 2421 1.825281 AAGGCTGCTCTCGCTCACTT 61.825 55.000 0.00 0.00 36.97 3.16
2044 2467 0.649475 CGGAGCTCAAGAAGATTGCG 59.351 55.000 17.19 1.45 0.00 4.85
2056 2479 7.919690 TCAAGAAGATTGCGTCTATTTTATGG 58.080 34.615 0.00 0.00 35.67 2.74
2190 2618 2.042433 TCCTAGTTGGGGGATTTGGTTG 59.958 50.000 0.00 0.00 36.20 3.77
2226 2654 6.260936 TCTTTCCAGCTGAAGTTTGAGTTAAG 59.739 38.462 17.39 3.91 33.63 1.85
2237 2665 8.804204 TGAAGTTTGAGTTAAGTTGGGTTTTAA 58.196 29.630 0.00 0.00 0.00 1.52
2245 2674 6.785466 AGTTAAGTTGGGTTTTAATGTGGGAT 59.215 34.615 0.00 0.00 0.00 3.85
2246 2675 7.291416 AGTTAAGTTGGGTTTTAATGTGGGATT 59.709 33.333 0.00 0.00 0.00 3.01
2247 2676 6.508030 AAGTTGGGTTTTAATGTGGGATTT 57.492 33.333 0.00 0.00 0.00 2.17
2248 2677 6.508030 AGTTGGGTTTTAATGTGGGATTTT 57.492 33.333 0.00 0.00 0.00 1.82
2249 2678 6.905736 AGTTGGGTTTTAATGTGGGATTTTT 58.094 32.000 0.00 0.00 0.00 1.94
2314 2743 6.072175 GGCCACTCATGTAACTTCATTGTAAA 60.072 38.462 0.00 0.00 0.00 2.01
2368 2797 2.469826 CCAACGTATGAGCGCAATAGA 58.530 47.619 11.47 0.00 34.88 1.98
2471 2903 4.429854 AAGTGCTTTCTTCCTCAAGAGT 57.570 40.909 0.00 0.00 39.90 3.24
2472 2904 4.429854 AGTGCTTTCTTCCTCAAGAGTT 57.570 40.909 0.00 0.00 39.90 3.01
2750 3643 6.592994 TCAACAAGCTCAAAGACATGAGATAG 59.407 38.462 8.41 0.00 44.78 2.08
2766 3659 5.608449 TGAGATAGCATCACCATTCTCTTG 58.392 41.667 0.00 0.00 32.69 3.02
2851 3749 0.543277 TTGAAGATGAGCGGGCAGAT 59.457 50.000 0.00 0.00 0.00 2.90
2893 3793 3.996150 AAAACACCTTGAGCAGTCATG 57.004 42.857 0.00 0.00 30.85 3.07
3019 4097 6.534079 GCGTCTTACATTTTGATAGTGGTAGT 59.466 38.462 0.00 0.00 0.00 2.73
3020 4098 7.703621 GCGTCTTACATTTTGATAGTGGTAGTA 59.296 37.037 0.00 0.00 0.00 1.82
3021 4099 9.017669 CGTCTTACATTTTGATAGTGGTAGTAC 57.982 37.037 0.00 0.00 0.00 2.73
3026 4104 8.922058 ACATTTTGATAGTGGTAGTACTTACG 57.078 34.615 0.00 0.00 32.79 3.18
3166 4303 1.003580 GCCCAGACAGAATCAGGTTGA 59.996 52.381 0.00 0.00 31.92 3.18
3174 4311 2.746362 CAGAATCAGGTTGAGGAGTTGC 59.254 50.000 0.00 0.00 0.00 4.17
3179 4316 0.886490 AGGTTGAGGAGTTGCTTGCG 60.886 55.000 0.00 0.00 0.00 4.85
3194 4331 1.745087 CTTGCGGTAATTGTGCCATCT 59.255 47.619 0.00 0.00 0.00 2.90
3201 4338 4.270008 GGTAATTGTGCCATCTACCAAGT 58.730 43.478 0.00 0.00 33.60 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.609853 TCTCACACTTTGACAAGCACTT 58.390 40.909 0.00 0.00 32.57 3.16
2 3 3.375299 ACTTCTCACACTTTGACAAGCAC 59.625 43.478 0.00 0.00 34.43 4.40
7 8 8.902540 AATATGTTACTTCTCACACTTTGACA 57.097 30.769 0.00 0.00 0.00 3.58
13 14 9.436957 CACCTTAAATATGTTACTTCTCACACT 57.563 33.333 0.00 0.00 0.00 3.55
16 17 8.788325 ACCACCTTAAATATGTTACTTCTCAC 57.212 34.615 0.00 0.00 0.00 3.51
30 31 9.668497 GTGAAGAGAGTTTATACCACCTTAAAT 57.332 33.333 0.00 0.00 0.00 1.40
31 32 7.816031 CGTGAAGAGAGTTTATACCACCTTAAA 59.184 37.037 0.00 0.00 0.00 1.52
32 33 7.318141 CGTGAAGAGAGTTTATACCACCTTAA 58.682 38.462 0.00 0.00 0.00 1.85
33 34 6.127535 CCGTGAAGAGAGTTTATACCACCTTA 60.128 42.308 0.00 0.00 0.00 2.69
34 35 5.337330 CCGTGAAGAGAGTTTATACCACCTT 60.337 44.000 0.00 0.00 0.00 3.50
35 36 4.159879 CCGTGAAGAGAGTTTATACCACCT 59.840 45.833 0.00 0.00 0.00 4.00
36 37 4.159135 TCCGTGAAGAGAGTTTATACCACC 59.841 45.833 0.00 0.00 0.00 4.61
37 38 5.320549 TCCGTGAAGAGAGTTTATACCAC 57.679 43.478 0.00 0.00 0.00 4.16
38 39 4.142227 GCTCCGTGAAGAGAGTTTATACCA 60.142 45.833 0.00 0.00 35.82 3.25
39 40 4.361420 GCTCCGTGAAGAGAGTTTATACC 58.639 47.826 0.00 0.00 35.82 2.73
40 41 4.036352 CGCTCCGTGAAGAGAGTTTATAC 58.964 47.826 0.00 0.00 35.82 1.47
41 42 3.943381 TCGCTCCGTGAAGAGAGTTTATA 59.057 43.478 0.00 0.00 35.82 0.98
42 43 2.753452 TCGCTCCGTGAAGAGAGTTTAT 59.247 45.455 0.00 0.00 35.82 1.40
43 44 2.156917 TCGCTCCGTGAAGAGAGTTTA 58.843 47.619 0.00 0.00 35.82 2.01
44 45 0.959553 TCGCTCCGTGAAGAGAGTTT 59.040 50.000 0.00 0.00 35.82 2.66
45 46 0.523966 CTCGCTCCGTGAAGAGAGTT 59.476 55.000 0.00 0.00 38.11 3.01
46 47 1.309499 CCTCGCTCCGTGAAGAGAGT 61.309 60.000 8.75 0.00 40.41 3.24
47 48 1.309499 ACCTCGCTCCGTGAAGAGAG 61.309 60.000 0.00 4.26 41.32 3.20
48 49 1.303398 ACCTCGCTCCGTGAAGAGA 60.303 57.895 0.00 0.00 35.82 3.10
49 50 1.153939 CACCTCGCTCCGTGAAGAG 60.154 63.158 0.00 0.00 36.92 2.85
50 51 2.636412 CCACCTCGCTCCGTGAAGA 61.636 63.158 0.00 0.00 31.36 2.87
51 52 2.125912 CCACCTCGCTCCGTGAAG 60.126 66.667 0.00 0.00 31.36 3.02
52 53 3.691342 CCCACCTCGCTCCGTGAA 61.691 66.667 0.00 0.00 31.36 3.18
53 54 4.671590 TCCCACCTCGCTCCGTGA 62.672 66.667 0.00 0.00 31.36 4.35
54 55 4.436998 GTCCCACCTCGCTCCGTG 62.437 72.222 0.00 0.00 0.00 4.94
55 56 2.776370 TTAGTCCCACCTCGCTCCGT 62.776 60.000 0.00 0.00 0.00 4.69
56 57 1.601419 TTTAGTCCCACCTCGCTCCG 61.601 60.000 0.00 0.00 0.00 4.63
57 58 0.831307 ATTTAGTCCCACCTCGCTCC 59.169 55.000 0.00 0.00 0.00 4.70
58 59 2.693267 AATTTAGTCCCACCTCGCTC 57.307 50.000 0.00 0.00 0.00 5.03
59 60 3.434940 AAAATTTAGTCCCACCTCGCT 57.565 42.857 0.00 0.00 0.00 4.93
60 61 3.254903 ACAAAAATTTAGTCCCACCTCGC 59.745 43.478 0.00 0.00 0.00 5.03
61 62 5.123344 CCTACAAAAATTTAGTCCCACCTCG 59.877 44.000 0.00 0.00 0.00 4.63
62 63 6.243148 TCCTACAAAAATTTAGTCCCACCTC 58.757 40.000 0.00 0.00 0.00 3.85
63 64 6.208840 TCCTACAAAAATTTAGTCCCACCT 57.791 37.500 0.00 0.00 0.00 4.00
64 65 6.904463 TTCCTACAAAAATTTAGTCCCACC 57.096 37.500 0.00 0.00 0.00 4.61
65 66 7.948357 AGTTTCCTACAAAAATTTAGTCCCAC 58.052 34.615 0.00 0.00 0.00 4.61
66 67 8.541899 AAGTTTCCTACAAAAATTTAGTCCCA 57.458 30.769 0.00 0.00 0.00 4.37
68 69 9.622004 GCTAAGTTTCCTACAAAAATTTAGTCC 57.378 33.333 10.53 0.00 37.81 3.85
74 75 8.297426 GCTACTGCTAAGTTTCCTACAAAAATT 58.703 33.333 0.00 0.00 37.88 1.82
75 76 7.360946 CGCTACTGCTAAGTTTCCTACAAAAAT 60.361 37.037 0.00 0.00 37.88 1.82
76 77 6.073440 CGCTACTGCTAAGTTTCCTACAAAAA 60.073 38.462 0.00 0.00 37.88 1.94
77 78 5.407387 CGCTACTGCTAAGTTTCCTACAAAA 59.593 40.000 0.00 0.00 37.88 2.44
78 79 4.927425 CGCTACTGCTAAGTTTCCTACAAA 59.073 41.667 0.00 0.00 37.88 2.83
79 80 4.491676 CGCTACTGCTAAGTTTCCTACAA 58.508 43.478 0.00 0.00 37.88 2.41
80 81 3.675228 GCGCTACTGCTAAGTTTCCTACA 60.675 47.826 0.00 0.00 37.88 2.74
81 82 2.858941 GCGCTACTGCTAAGTTTCCTAC 59.141 50.000 0.00 0.00 37.88 3.18
82 83 2.758979 AGCGCTACTGCTAAGTTTCCTA 59.241 45.455 8.99 0.00 45.14 2.94
83 84 1.550976 AGCGCTACTGCTAAGTTTCCT 59.449 47.619 8.99 0.00 45.14 3.36
84 85 2.011540 AGCGCTACTGCTAAGTTTCC 57.988 50.000 8.99 0.00 45.14 3.13
85 86 2.737252 ACAAGCGCTACTGCTAAGTTTC 59.263 45.455 12.05 0.00 46.60 2.78
86 87 2.767505 ACAAGCGCTACTGCTAAGTTT 58.232 42.857 12.05 0.00 46.60 2.66
87 88 2.457366 ACAAGCGCTACTGCTAAGTT 57.543 45.000 12.05 0.00 46.60 2.66
88 89 3.448686 CATACAAGCGCTACTGCTAAGT 58.551 45.455 12.05 2.18 46.60 2.24
89 90 2.797156 CCATACAAGCGCTACTGCTAAG 59.203 50.000 12.05 0.00 46.60 2.18
90 91 2.483013 CCCATACAAGCGCTACTGCTAA 60.483 50.000 12.05 0.00 46.60 3.09
91 92 1.068588 CCCATACAAGCGCTACTGCTA 59.931 52.381 12.05 2.19 46.60 3.49
93 94 0.179084 TCCCATACAAGCGCTACTGC 60.179 55.000 12.05 0.00 0.00 4.40
94 95 2.309528 TTCCCATACAAGCGCTACTG 57.690 50.000 12.05 9.38 0.00 2.74
95 96 3.206150 CATTTCCCATACAAGCGCTACT 58.794 45.455 12.05 0.01 0.00 2.57
96 97 2.287009 GCATTTCCCATACAAGCGCTAC 60.287 50.000 12.05 0.00 0.00 3.58
97 98 1.946768 GCATTTCCCATACAAGCGCTA 59.053 47.619 12.05 0.00 0.00 4.26
98 99 0.740737 GCATTTCCCATACAAGCGCT 59.259 50.000 2.64 2.64 0.00 5.92
99 100 0.592247 CGCATTTCCCATACAAGCGC 60.592 55.000 0.00 0.00 37.20 5.92
100 101 0.592247 GCGCATTTCCCATACAAGCG 60.592 55.000 0.30 0.00 45.68 4.68
101 102 0.740737 AGCGCATTTCCCATACAAGC 59.259 50.000 11.47 0.00 0.00 4.01
102 103 1.534595 GCAGCGCATTTCCCATACAAG 60.535 52.381 11.47 0.00 0.00 3.16
103 104 0.455410 GCAGCGCATTTCCCATACAA 59.545 50.000 11.47 0.00 0.00 2.41
104 105 0.394216 AGCAGCGCATTTCCCATACA 60.394 50.000 11.47 0.00 0.00 2.29
105 106 1.264288 GTAGCAGCGCATTTCCCATAC 59.736 52.381 11.47 0.00 0.00 2.39
106 107 1.140852 AGTAGCAGCGCATTTCCCATA 59.859 47.619 11.47 0.00 0.00 2.74
107 108 0.107017 AGTAGCAGCGCATTTCCCAT 60.107 50.000 11.47 0.00 0.00 4.00
108 109 0.539518 TAGTAGCAGCGCATTTCCCA 59.460 50.000 11.47 0.00 0.00 4.37
109 110 0.938008 GTAGTAGCAGCGCATTTCCC 59.062 55.000 11.47 0.00 0.00 3.97
110 111 0.577269 CGTAGTAGCAGCGCATTTCC 59.423 55.000 11.47 0.00 0.00 3.13
117 118 0.578683 TACGTAGCGTAGTAGCAGCG 59.421 55.000 0.00 4.34 41.54 5.18
130 131 2.004489 GCGCGCTACTGCTACGTAG 61.004 63.158 26.67 18.47 39.83 3.51
131 132 2.023741 GCGCGCTACTGCTACGTA 59.976 61.111 26.67 0.00 38.23 3.57
134 135 3.313257 GACGCGCGCTACTGCTAC 61.313 66.667 32.58 6.27 36.97 3.58
135 136 4.881492 CGACGCGCGCTACTGCTA 62.881 66.667 32.58 0.00 36.97 3.49
139 140 2.784957 TTAACACGACGCGCGCTACT 62.785 55.000 32.58 10.83 46.04 2.57
140 141 2.427765 TTAACACGACGCGCGCTAC 61.428 57.895 32.58 20.22 46.04 3.58
141 142 2.126927 TTAACACGACGCGCGCTA 60.127 55.556 32.58 9.92 46.04 4.26
142 143 3.759828 GTTAACACGACGCGCGCT 61.760 61.111 32.58 17.75 46.04 5.92
152 153 0.509499 TAGCAGCAACGCGTTAACAC 59.491 50.000 26.11 14.59 36.85 3.32
153 154 1.434555 ATAGCAGCAACGCGTTAACA 58.565 45.000 26.11 7.23 36.85 2.41
154 155 3.061697 AGTTATAGCAGCAACGCGTTAAC 59.938 43.478 26.11 21.02 35.82 2.01
155 156 3.255725 AGTTATAGCAGCAACGCGTTAA 58.744 40.909 26.11 9.91 36.85 2.01
156 157 2.883574 AGTTATAGCAGCAACGCGTTA 58.116 42.857 26.11 8.44 36.85 3.18
157 158 1.722011 AGTTATAGCAGCAACGCGTT 58.278 45.000 20.79 20.79 36.85 4.84
158 159 2.460918 CTAGTTATAGCAGCAACGCGT 58.539 47.619 5.58 5.58 36.85 6.01
184 185 2.079020 TAATTCCTACGAGGCCGCCG 62.079 60.000 17.07 17.07 39.95 6.46
185 186 0.320697 ATAATTCCTACGAGGCCGCC 59.679 55.000 0.00 0.00 39.95 6.13
186 187 2.877335 CTATAATTCCTACGAGGCCGC 58.123 52.381 0.00 0.00 39.95 6.53
187 188 2.230508 TGCTATAATTCCTACGAGGCCG 59.769 50.000 0.00 0.00 42.50 6.13
188 189 3.851098 CTGCTATAATTCCTACGAGGCC 58.149 50.000 0.00 0.00 34.61 5.19
189 190 3.254892 GCTGCTATAATTCCTACGAGGC 58.745 50.000 0.00 0.00 34.61 4.70
190 191 4.489810 CTGCTGCTATAATTCCTACGAGG 58.510 47.826 0.00 0.00 36.46 4.63
191 192 3.923461 GCTGCTGCTATAATTCCTACGAG 59.077 47.826 8.53 0.00 36.03 4.18
192 193 3.611766 CGCTGCTGCTATAATTCCTACGA 60.612 47.826 14.03 0.00 36.97 3.43
193 194 2.663602 CGCTGCTGCTATAATTCCTACG 59.336 50.000 14.03 0.00 36.97 3.51
194 195 2.413453 GCGCTGCTGCTATAATTCCTAC 59.587 50.000 14.03 0.00 36.97 3.18
195 196 2.688507 GCGCTGCTGCTATAATTCCTA 58.311 47.619 14.03 0.00 36.97 2.94
196 197 1.517242 GCGCTGCTGCTATAATTCCT 58.483 50.000 14.03 0.00 36.97 3.36
197 198 0.164647 CGCGCTGCTGCTATAATTCC 59.835 55.000 14.03 0.00 36.97 3.01
198 199 0.861837 ACGCGCTGCTGCTATAATTC 59.138 50.000 5.73 0.00 36.97 2.17
199 200 0.861837 GACGCGCTGCTGCTATAATT 59.138 50.000 5.73 0.00 36.97 1.40
200 201 0.032678 AGACGCGCTGCTGCTATAAT 59.967 50.000 5.73 0.00 36.97 1.28
201 202 0.179111 AAGACGCGCTGCTGCTATAA 60.179 50.000 5.73 0.00 36.97 0.98
202 203 0.179111 AAAGACGCGCTGCTGCTATA 60.179 50.000 5.73 0.00 36.97 1.31
203 204 1.448540 AAAGACGCGCTGCTGCTAT 60.449 52.632 5.73 0.00 36.97 2.97
204 205 2.048222 AAAGACGCGCTGCTGCTA 60.048 55.556 5.73 0.00 36.97 3.49
205 206 3.720193 CAAAGACGCGCTGCTGCT 61.720 61.111 5.73 0.00 36.97 4.24
206 207 4.748679 CCAAAGACGCGCTGCTGC 62.749 66.667 5.73 5.34 0.00 5.25
207 208 4.093952 CCCAAAGACGCGCTGCTG 62.094 66.667 5.73 6.02 0.00 4.41
232 233 4.811024 TGCTGATACAAACATAGCAGTAGC 59.189 41.667 0.00 0.00 40.10 3.58
237 238 2.609002 CGCTGCTGATACAAACATAGCA 59.391 45.455 0.00 0.00 41.61 3.49
238 239 2.866156 TCGCTGCTGATACAAACATAGC 59.134 45.455 0.00 0.00 35.06 2.97
239 240 4.115516 ACTCGCTGCTGATACAAACATAG 58.884 43.478 0.00 0.00 0.00 2.23
240 241 4.123497 ACTCGCTGCTGATACAAACATA 57.877 40.909 0.00 0.00 0.00 2.29
241 242 2.977914 ACTCGCTGCTGATACAAACAT 58.022 42.857 0.00 0.00 0.00 2.71
242 243 2.455674 ACTCGCTGCTGATACAAACA 57.544 45.000 0.00 0.00 0.00 2.83
243 244 3.424962 GGAAACTCGCTGCTGATACAAAC 60.425 47.826 0.00 0.00 0.00 2.93
244 245 2.742053 GGAAACTCGCTGCTGATACAAA 59.258 45.455 0.00 0.00 0.00 2.83
245 246 2.346803 GGAAACTCGCTGCTGATACAA 58.653 47.619 0.00 0.00 0.00 2.41
246 247 1.735700 CGGAAACTCGCTGCTGATACA 60.736 52.381 0.00 0.00 0.00 2.29
247 248 0.924090 CGGAAACTCGCTGCTGATAC 59.076 55.000 0.00 0.00 0.00 2.24
248 249 3.345737 CGGAAACTCGCTGCTGATA 57.654 52.632 0.00 0.00 0.00 2.15
249 250 4.192000 CGGAAACTCGCTGCTGAT 57.808 55.556 0.00 0.00 0.00 2.90
257 258 3.793144 GCTGGCTGCGGAAACTCG 61.793 66.667 0.00 0.00 0.00 4.18
282 283 7.043325 CCAAAATAACTCGCTGCTACTAACTAG 60.043 40.741 0.00 0.00 0.00 2.57
283 284 6.755141 CCAAAATAACTCGCTGCTACTAACTA 59.245 38.462 0.00 0.00 0.00 2.24
284 285 5.581085 CCAAAATAACTCGCTGCTACTAACT 59.419 40.000 0.00 0.00 0.00 2.24
285 286 5.220605 CCCAAAATAACTCGCTGCTACTAAC 60.221 44.000 0.00 0.00 0.00 2.34
286 287 4.873827 CCCAAAATAACTCGCTGCTACTAA 59.126 41.667 0.00 0.00 0.00 2.24
287 288 4.160814 TCCCAAAATAACTCGCTGCTACTA 59.839 41.667 0.00 0.00 0.00 1.82
288 289 3.055385 TCCCAAAATAACTCGCTGCTACT 60.055 43.478 0.00 0.00 0.00 2.57
289 290 3.063588 GTCCCAAAATAACTCGCTGCTAC 59.936 47.826 0.00 0.00 0.00 3.58
290 291 3.267483 GTCCCAAAATAACTCGCTGCTA 58.733 45.455 0.00 0.00 0.00 3.49
291 292 2.084546 GTCCCAAAATAACTCGCTGCT 58.915 47.619 0.00 0.00 0.00 4.24
292 293 1.202031 CGTCCCAAAATAACTCGCTGC 60.202 52.381 0.00 0.00 0.00 5.25
293 294 1.202031 GCGTCCCAAAATAACTCGCTG 60.202 52.381 0.00 0.00 39.26 5.18
294 295 1.084289 GCGTCCCAAAATAACTCGCT 58.916 50.000 0.00 0.00 39.26 4.93
295 296 0.247537 CGCGTCCCAAAATAACTCGC 60.248 55.000 0.00 0.00 39.03 5.03
296 297 0.247537 GCGCGTCCCAAAATAACTCG 60.248 55.000 8.43 0.00 0.00 4.18
297 298 1.084289 AGCGCGTCCCAAAATAACTC 58.916 50.000 8.43 0.00 0.00 3.01
298 299 0.802494 CAGCGCGTCCCAAAATAACT 59.198 50.000 8.43 0.00 0.00 2.24
299 300 0.796870 GCAGCGCGTCCCAAAATAAC 60.797 55.000 8.43 0.00 0.00 1.89
300 301 0.958382 AGCAGCGCGTCCCAAAATAA 60.958 50.000 8.43 0.00 0.00 1.40
301 302 1.376683 AGCAGCGCGTCCCAAAATA 60.377 52.632 8.43 0.00 0.00 1.40
302 303 2.672996 AGCAGCGCGTCCCAAAAT 60.673 55.556 8.43 0.00 0.00 1.82
303 304 3.659092 CAGCAGCGCGTCCCAAAA 61.659 61.111 8.43 0.00 0.00 2.44
304 305 2.514510 TATCAGCAGCGCGTCCCAAA 62.515 55.000 8.43 0.00 0.00 3.28
305 306 2.514510 TTATCAGCAGCGCGTCCCAA 62.515 55.000 8.43 0.00 0.00 4.12
306 307 2.906182 CTTATCAGCAGCGCGTCCCA 62.906 60.000 8.43 0.00 0.00 4.37
307 308 2.202878 TTATCAGCAGCGCGTCCC 60.203 61.111 8.43 0.00 0.00 4.46
308 309 0.598680 ATCTTATCAGCAGCGCGTCC 60.599 55.000 8.43 0.00 0.00 4.79
309 310 1.191204 GAATCTTATCAGCAGCGCGTC 59.809 52.381 8.43 0.00 0.00 5.19
310 311 1.202463 AGAATCTTATCAGCAGCGCGT 60.202 47.619 8.43 0.00 0.00 6.01
311 312 1.191868 CAGAATCTTATCAGCAGCGCG 59.808 52.381 0.00 0.00 0.00 6.86
312 313 2.033065 CACAGAATCTTATCAGCAGCGC 60.033 50.000 0.00 0.00 0.00 5.92
313 314 3.193263 ACACAGAATCTTATCAGCAGCG 58.807 45.455 0.00 0.00 0.00 5.18
314 315 7.328249 GTCTATACACAGAATCTTATCAGCAGC 59.672 40.741 0.00 0.00 0.00 5.25
315 316 8.575589 AGTCTATACACAGAATCTTATCAGCAG 58.424 37.037 0.00 0.00 0.00 4.24
316 317 8.470657 AGTCTATACACAGAATCTTATCAGCA 57.529 34.615 0.00 0.00 0.00 4.41
317 318 9.757227 AAAGTCTATACACAGAATCTTATCAGC 57.243 33.333 0.00 0.00 0.00 4.26
322 323 9.268282 AGGGAAAAGTCTATACACAGAATCTTA 57.732 33.333 0.00 0.00 0.00 2.10
323 324 8.152023 AGGGAAAAGTCTATACACAGAATCTT 57.848 34.615 0.00 0.00 0.00 2.40
324 325 7.741554 AGGGAAAAGTCTATACACAGAATCT 57.258 36.000 0.00 0.00 0.00 2.40
325 326 8.697292 ACTAGGGAAAAGTCTATACACAGAATC 58.303 37.037 0.00 0.00 0.00 2.52
326 327 8.611051 ACTAGGGAAAAGTCTATACACAGAAT 57.389 34.615 0.00 0.00 0.00 2.40
327 328 9.186837 CTACTAGGGAAAAGTCTATACACAGAA 57.813 37.037 0.00 0.00 0.00 3.02
328 329 8.334734 ACTACTAGGGAAAAGTCTATACACAGA 58.665 37.037 0.00 0.00 0.00 3.41
329 330 8.407064 CACTACTAGGGAAAAGTCTATACACAG 58.593 40.741 0.00 0.00 0.00 3.66
330 331 8.111545 TCACTACTAGGGAAAAGTCTATACACA 58.888 37.037 0.00 0.00 0.00 3.72
331 332 8.517062 TCACTACTAGGGAAAAGTCTATACAC 57.483 38.462 0.00 0.00 0.00 2.90
332 333 9.537852 TTTCACTACTAGGGAAAAGTCTATACA 57.462 33.333 10.56 0.00 43.98 2.29
334 335 9.198475 CCTTTCACTACTAGGGAAAAGTCTATA 57.802 37.037 13.41 0.00 45.95 1.31
335 336 7.679025 ACCTTTCACTACTAGGGAAAAGTCTAT 59.321 37.037 13.41 0.00 45.95 1.98
336 337 7.015064 ACCTTTCACTACTAGGGAAAAGTCTA 58.985 38.462 13.41 0.00 45.95 2.59
337 338 5.845065 ACCTTTCACTACTAGGGAAAAGTCT 59.155 40.000 13.41 0.00 45.95 3.24
338 339 6.111669 ACCTTTCACTACTAGGGAAAAGTC 57.888 41.667 13.41 0.00 45.95 3.01
339 340 5.845065 AGACCTTTCACTACTAGGGAAAAGT 59.155 40.000 12.93 12.93 45.95 2.66
340 341 6.361768 AGACCTTTCACTACTAGGGAAAAG 57.638 41.667 13.41 10.43 45.95 2.27
341 342 7.243824 TCTAGACCTTTCACTACTAGGGAAAA 58.756 38.462 13.41 0.00 45.95 2.29
342 343 6.797707 TCTAGACCTTTCACTACTAGGGAAA 58.202 40.000 12.12 12.12 44.67 3.13
343 344 6.398655 TCTAGACCTTTCACTACTAGGGAA 57.601 41.667 0.00 0.00 35.49 3.97
344 345 5.631953 GCTCTAGACCTTTCACTACTAGGGA 60.632 48.000 0.00 0.00 34.68 4.20
345 346 4.581409 GCTCTAGACCTTTCACTACTAGGG 59.419 50.000 0.00 0.00 35.52 3.53
346 347 5.442391 AGCTCTAGACCTTTCACTACTAGG 58.558 45.833 0.00 0.00 33.61 3.02
347 348 6.826741 AGAAGCTCTAGACCTTTCACTACTAG 59.173 42.308 1.84 0.00 33.94 2.57
348 349 6.723339 AGAAGCTCTAGACCTTTCACTACTA 58.277 40.000 1.84 0.00 0.00 1.82
349 350 5.576128 AGAAGCTCTAGACCTTTCACTACT 58.424 41.667 1.84 0.00 0.00 2.57
350 351 5.163591 GGAGAAGCTCTAGACCTTTCACTAC 60.164 48.000 1.84 0.00 0.00 2.73
351 352 4.951094 GGAGAAGCTCTAGACCTTTCACTA 59.049 45.833 1.84 0.00 0.00 2.74
352 353 3.767131 GGAGAAGCTCTAGACCTTTCACT 59.233 47.826 1.84 0.00 0.00 3.41
353 354 3.511934 TGGAGAAGCTCTAGACCTTTCAC 59.488 47.826 1.84 0.00 0.00 3.18
354 355 3.511934 GTGGAGAAGCTCTAGACCTTTCA 59.488 47.826 1.84 0.13 0.00 2.69
355 356 3.428316 CGTGGAGAAGCTCTAGACCTTTC 60.428 52.174 1.84 0.86 0.00 2.62
356 357 2.494073 CGTGGAGAAGCTCTAGACCTTT 59.506 50.000 1.84 0.00 0.00 3.11
357 358 2.096248 CGTGGAGAAGCTCTAGACCTT 58.904 52.381 0.00 0.00 0.00 3.50
364 365 2.055042 ATCGCCGTGGAGAAGCTCT 61.055 57.895 0.00 0.00 0.00 4.09
400 401 0.394938 TGGCGGCACTCTTTTCTGTA 59.605 50.000 7.97 0.00 0.00 2.74
432 433 1.072331 ACCTCATTCTCGGCTTGTTGT 59.928 47.619 0.00 0.00 0.00 3.32
473 474 2.094026 CACGATGTGAGATGGAGGTTCA 60.094 50.000 0.00 0.00 35.23 3.18
487 488 1.080501 CGGTCTGTGCTCACGATGT 60.081 57.895 0.00 0.00 0.00 3.06
506 507 2.815647 GGCAGTGTAGCTCGGTGC 60.816 66.667 0.00 0.00 43.29 5.01
541 542 2.926539 AGATCTGATCTGGCCAGCA 58.073 52.632 28.91 19.56 38.44 4.41
613 614 1.818959 GCACCTTGGATTGGCAGCAA 61.819 55.000 0.00 0.00 0.00 3.91
614 615 2.277591 GCACCTTGGATTGGCAGCA 61.278 57.895 0.00 0.00 0.00 4.41
617 621 2.676121 CGGCACCTTGGATTGGCA 60.676 61.111 0.00 0.00 38.17 4.92
621 625 2.625823 CGTTGCGGCACCTTGGATT 61.626 57.895 0.05 0.00 0.00 3.01
686 694 2.437359 GCGCACTGGATCCAAGCT 60.437 61.111 27.07 8.45 0.00 3.74
697 705 3.349006 CAAGCGGAAGTGCGCACT 61.349 61.111 36.44 36.44 44.94 4.40
813 821 4.888325 CCATCCCTCCCCTCCGCT 62.888 72.222 0.00 0.00 0.00 5.52
868 1011 1.845489 GCGTATGACGTAAGCGCAAAC 60.845 52.381 11.47 6.06 44.73 2.93
895 1038 3.621268 TGACATAAGCGCAGATTACCAAC 59.379 43.478 11.47 0.00 42.77 3.77
898 1041 4.090066 CGTATGACATAAGCGCAGATTACC 59.910 45.833 11.47 0.00 42.77 2.85
899 1042 4.433022 GCGTATGACATAAGCGCAGATTAC 60.433 45.833 19.78 0.93 42.77 1.89
967 1110 1.160137 GCCTTCTTGCTTCGTCACAT 58.840 50.000 0.00 0.00 0.00 3.21
968 1111 1.221466 CGCCTTCTTGCTTCGTCACA 61.221 55.000 0.00 0.00 0.00 3.58
969 1112 1.222115 ACGCCTTCTTGCTTCGTCAC 61.222 55.000 0.00 0.00 0.00 3.67
970 1113 0.531974 AACGCCTTCTTGCTTCGTCA 60.532 50.000 0.00 0.00 32.53 4.35
971 1114 0.110644 CAACGCCTTCTTGCTTCGTC 60.111 55.000 0.00 0.00 32.53 4.20
973 1116 0.586319 TTCAACGCCTTCTTGCTTCG 59.414 50.000 0.00 0.00 0.00 3.79
974 1117 1.068954 CCTTCAACGCCTTCTTGCTTC 60.069 52.381 0.00 0.00 0.00 3.86
984 1326 1.154225 CATCAACGCCTTCAACGCC 60.154 57.895 0.00 0.00 0.00 5.68
985 1327 1.797537 GCATCAACGCCTTCAACGC 60.798 57.895 0.00 0.00 0.00 4.84
986 1328 0.179215 GAGCATCAACGCCTTCAACG 60.179 55.000 0.00 0.00 33.17 4.10
988 1330 0.320334 TCGAGCATCAACGCCTTCAA 60.320 50.000 0.00 0.00 33.17 2.69
1053 1467 2.680913 CGCCTTCTTGCTCAACGGG 61.681 63.158 0.00 0.00 0.00 5.28
1094 1514 2.749044 CAGCGCACCCAAGCATCT 60.749 61.111 11.47 0.00 35.48 2.90
1333 1753 1.094073 ACGTCGTCATAGTCGGGGAG 61.094 60.000 0.00 0.00 0.00 4.30
1417 1837 1.613630 TCCCAGAGGAAGGGCTCAC 60.614 63.158 0.00 0.00 46.36 3.51
1466 1886 1.840737 GTGAGACCTGAGCTCCAGTA 58.159 55.000 12.15 0.00 41.33 2.74
1467 1887 1.247419 CGTGAGACCTGAGCTCCAGT 61.247 60.000 12.15 8.47 41.33 4.00
1659 2079 1.544691 GTGAGAACGTAGAGCTTCCCA 59.455 52.381 0.00 0.00 0.00 4.37
1750 2170 5.359756 TCTATGCGTTCTCTGTATGCATTT 58.640 37.500 3.54 0.00 43.74 2.32
1776 2199 1.269166 AGAAGCGCTTTACGTCATCG 58.731 50.000 25.84 0.00 46.11 3.84
1821 2244 2.751436 CCCACCATCAACAGCCGG 60.751 66.667 0.00 0.00 0.00 6.13
1848 2271 2.544685 GAATCGATGGGATGCGGATAG 58.455 52.381 0.00 0.00 34.93 2.08
1870 2293 0.395311 AAGCACTGAGATGGCATGGG 60.395 55.000 3.81 0.00 0.00 4.00
2008 2431 1.662608 CGCCACTGACAGACTGACT 59.337 57.895 10.08 0.00 0.00 3.41
2044 2467 1.798813 CCGCTCGCCCATAAAATAGAC 59.201 52.381 0.00 0.00 0.00 2.59
2056 2479 2.583593 GATCACACTCCGCTCGCC 60.584 66.667 0.00 0.00 0.00 5.54
2277 2706 4.588528 ACATGAGTGGCCAAATGTTAACTT 59.411 37.500 19.35 0.00 28.99 2.66
2278 2707 4.151883 ACATGAGTGGCCAAATGTTAACT 58.848 39.130 19.35 6.10 28.99 2.24
2288 2717 3.719268 ATGAAGTTACATGAGTGGCCA 57.281 42.857 0.00 0.00 0.00 5.36
2368 2797 3.161067 TCTGCACTCTTTCTCTGCTACT 58.839 45.455 0.00 0.00 0.00 2.57
2471 2903 4.523083 GTGACCTGATGGCCACTATTTAA 58.477 43.478 8.16 0.00 42.45 1.52
2472 2904 4.150897 GTGACCTGATGGCCACTATTTA 57.849 45.455 8.16 0.00 42.45 1.40
2558 2990 6.402983 CCTCTTGTCTCTGCACAAATTACATC 60.403 42.308 0.00 0.00 35.83 3.06
2750 3643 1.814394 TGTGCAAGAGAATGGTGATGC 59.186 47.619 0.00 0.00 0.00 3.91
2766 3659 5.750067 AGAGAAACATGTTTGAAATGTGTGC 59.250 36.000 27.85 9.55 38.27 4.57
2851 3749 2.212812 TGAGAGAGAAGCAGCTCTGA 57.787 50.000 12.40 0.00 44.92 3.27
2907 3807 6.942532 TTAGAAACCCTATGATGACATTGC 57.057 37.500 0.00 0.00 37.87 3.56
3021 4099 9.525007 CTTTGTAATGTTTGCTTAGTACGTAAG 57.475 33.333 0.00 0.00 41.20 2.34
3022 4100 9.258826 TCTTTGTAATGTTTGCTTAGTACGTAA 57.741 29.630 0.00 0.00 0.00 3.18
3026 4104 9.595357 GAACTCTTTGTAATGTTTGCTTAGTAC 57.405 33.333 0.00 0.00 0.00 2.73
3082 4160 8.221965 TGCCATATGGACGATACTAGTATTAG 57.778 38.462 26.47 15.12 37.39 1.73
3095 4232 1.331756 GTTGAAGCTGCCATATGGACG 59.668 52.381 26.47 15.27 37.39 4.79
3166 4303 1.812571 CAATTACCGCAAGCAACTCCT 59.187 47.619 0.00 0.00 0.00 3.69
3194 4331 3.485394 TGCTTGCAGAAATGACTTGGTA 58.515 40.909 0.00 0.00 0.00 3.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.