Multiple sequence alignment - TraesCS2B01G356700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G356700 chr2B 100.000 4969 0 0 1 4969 508956611 508961579 0.000000e+00 9177.0
1 TraesCS2B01G356700 chr2D 91.787 1875 92 20 726 2569 430623358 430625201 0.000000e+00 2553.0
2 TraesCS2B01G356700 chr2D 90.691 999 36 12 2568 3532 430625305 430626280 0.000000e+00 1277.0
3 TraesCS2B01G356700 chr2D 92.801 764 36 7 3630 4389 430626355 430627103 0.000000e+00 1088.0
4 TraesCS2B01G356700 chr2D 96.802 469 8 5 1 465 430622514 430622979 0.000000e+00 776.0
5 TraesCS2B01G356700 chr2D 87.633 283 24 2 4548 4823 37874255 37873977 8.030000e-83 318.0
6 TraesCS2B01G356700 chr2D 85.590 229 29 2 2777 3002 139025724 139025497 2.310000e-58 237.0
7 TraesCS2B01G356700 chr2D 85.806 155 15 2 4390 4537 37874458 37874304 1.850000e-34 158.0
8 TraesCS2B01G356700 chr2D 93.333 105 7 0 619 723 430623099 430623203 6.660000e-34 156.0
9 TraesCS2B01G356700 chr2D 95.946 74 3 0 450 523 430622995 430623068 2.430000e-23 121.0
10 TraesCS2B01G356700 chr2D 96.154 52 2 0 4324 4375 637605958 637605907 8.860000e-13 86.1
11 TraesCS2B01G356700 chr2D 100.000 31 0 0 552 582 430623064 430623094 1.930000e-04 58.4
12 TraesCS2B01G356700 chr2A 93.861 1694 78 17 914 2594 555337051 555335371 0.000000e+00 2529.0
13 TraesCS2B01G356700 chr2A 90.377 1299 90 19 3030 4322 555334447 555333178 0.000000e+00 1674.0
14 TraesCS2B01G356700 chr2A 92.127 724 26 10 1 721 555338271 555337576 0.000000e+00 992.0
15 TraesCS2B01G356700 chr2A 83.740 246 34 4 2777 3018 161954591 161954834 1.390000e-55 228.0
16 TraesCS2B01G356700 chr2A 83.854 192 10 7 726 903 555337389 555337205 3.980000e-36 163.0
17 TraesCS2B01G356700 chr2A 83.851 161 13 8 4387 4537 514864232 514864075 1.860000e-29 141.0
18 TraesCS2B01G356700 chr2A 84.298 121 16 2 4548 4668 514863195 514863312 1.130000e-21 115.0
19 TraesCS2B01G356700 chr2A 89.706 68 5 1 2705 2770 555334543 555334476 8.860000e-13 86.1
20 TraesCS2B01G356700 chr2A 86.885 61 8 0 4747 4807 514863362 514863422 8.930000e-08 69.4
21 TraesCS2B01G356700 chr2A 86.154 65 5 3 4319 4383 209261141 209261081 3.210000e-07 67.6
22 TraesCS2B01G356700 chr2A 100.000 31 0 0 4824 4854 514863515 514863545 1.930000e-04 58.4
23 TraesCS2B01G356700 chrUn 95.775 213 6 1 1 210 478027293 478027081 1.710000e-89 340.0
24 TraesCS2B01G356700 chr4B 86.833 281 24 5 4550 4823 604535175 604534901 8.080000e-78 302.0
25 TraesCS2B01G356700 chr4B 81.132 159 19 7 4388 4537 604533823 604533979 3.140000e-22 117.0
26 TraesCS2B01G356700 chr3B 86.170 282 24 5 4550 4823 755301290 755301016 1.750000e-74 291.0
27 TraesCS2B01G356700 chr3B 88.710 62 3 3 4318 4376 525999128 525999188 6.900000e-09 73.1
28 TraesCS2B01G356700 chr3B 92.157 51 4 0 4857 4907 702837407 702837357 6.900000e-09 73.1
29 TraesCS2B01G356700 chr5B 85.560 277 32 5 4554 4823 586627330 586627605 2.930000e-72 283.0
30 TraesCS2B01G356700 chr5B 85.443 158 13 6 4389 4537 586624252 586624408 6.660000e-34 156.0
31 TraesCS2B01G356700 chr5B 88.119 101 12 0 4855 4955 467175200 467175100 2.430000e-23 121.0
32 TraesCS2B01G356700 chr5B 91.525 59 5 0 4316 4374 43692070 43692128 1.150000e-11 82.4
33 TraesCS2B01G356700 chr5A 86.800 250 26 6 2775 3019 445133911 445134158 6.340000e-69 272.0
34 TraesCS2B01G356700 chr7B 84.646 254 30 8 2775 3024 297400473 297400721 1.380000e-60 244.0
35 TraesCS2B01G356700 chr7B 85.714 112 10 2 4386 4491 596682009 596682120 4.070000e-21 113.0
36 TraesCS2B01G356700 chr7A 83.858 254 33 8 2775 3024 391906756 391906507 8.320000e-58 235.0
37 TraesCS2B01G356700 chr7A 81.132 159 16 8 4390 4537 105406873 105406718 1.130000e-21 115.0
38 TraesCS2B01G356700 chr7A 75.686 255 30 19 4553 4807 105405849 105406071 1.140000e-16 99.0
39 TraesCS2B01G356700 chr7A 85.135 74 4 4 4310 4378 44885017 44884946 8.930000e-08 69.4
40 TraesCS2B01G356700 chr7A 100.000 31 0 0 4824 4854 105406164 105406194 1.930000e-04 58.4
41 TraesCS2B01G356700 chr3A 83.399 253 36 3 2776 3025 468533879 468533630 3.870000e-56 230.0
42 TraesCS2B01G356700 chr3A 81.739 230 22 5 4542 4763 686707396 686707613 1.840000e-39 174.0
43 TraesCS2B01G356700 chr3A 84.375 160 16 5 4387 4537 686705044 686705203 1.110000e-31 148.0
44 TraesCS2B01G356700 chr1D 83.740 246 30 8 2776 3013 435755375 435755132 1.800000e-54 224.0
45 TraesCS2B01G356700 chr1D 91.379 58 4 1 4319 4375 447913108 447913165 1.480000e-10 78.7
46 TraesCS2B01G356700 chr3D 83.058 242 32 5 2776 3013 330286202 330286438 1.400000e-50 211.0
47 TraesCS2B01G356700 chr3D 88.889 63 5 2 4319 4380 475441989 475441928 5.330000e-10 76.8
48 TraesCS2B01G356700 chr3D 88.333 60 4 2 4319 4378 352110702 352110646 8.930000e-08 69.4
49 TraesCS2B01G356700 chr1B 90.099 101 10 0 4855 4955 563749396 563749296 1.120000e-26 132.0
50 TraesCS2B01G356700 chr6D 80.921 152 22 4 4387 4531 35019930 35019779 4.070000e-21 113.0
51 TraesCS2B01G356700 chr5D 79.195 149 22 7 4390 4531 560028978 560028832 1.470000e-15 95.3
52 TraesCS2B01G356700 chr5D 87.143 70 3 4 4318 4384 273117944 273117878 1.920000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G356700 chr2B 508956611 508961579 4968 False 9177.000000 9177 100.0000 1 4969 1 chr2B.!!$F1 4968
1 TraesCS2B01G356700 chr2D 430622514 430627103 4589 False 861.342857 2553 94.4800 1 4389 7 chr2D.!!$F1 4388
2 TraesCS2B01G356700 chr2A 555333178 555338271 5093 True 1088.820000 2529 89.9850 1 4322 5 chr2A.!!$R3 4321
3 TraesCS2B01G356700 chr5B 586624252 586627605 3353 False 219.500000 283 85.5015 4389 4823 2 chr5B.!!$F2 434

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
684 719 0.230769 CGCGCATGCTAAACTAGAGC 59.769 55.0 17.13 7.23 39.65 4.09 F
1598 2007 0.031178 GTGTTGCAGGTCCAAGCTTG 59.969 55.0 19.93 19.93 0.00 4.01 F
2646 3922 0.958822 ATTCGGTTCCAACTGTTGCC 59.041 50.0 14.94 9.86 36.65 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1630 2039 0.397675 TCCAGATGTGCTCCTCCGAT 60.398 55.000 0.00 0.00 0.00 4.18 R
3077 4379 2.029200 TGTGCACATTGCCCTTGTATTG 60.029 45.455 17.42 0.00 44.23 1.90 R
4547 5900 0.593008 TAGCGCCGTTAGTACATGCG 60.593 55.000 2.29 2.96 43.80 4.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 0.747255 GAAGCTGACTGGAGCCGATA 59.253 55.000 0.00 0.00 40.08 2.92
157 161 8.758829 TCTGTAAAGGTGCTAATTCATCTAGAA 58.241 33.333 0.00 0.00 41.28 2.10
234 238 0.603707 GCAGCAGCTCTGTTGTACCA 60.604 55.000 13.77 0.00 44.66 3.25
236 240 1.532868 CAGCAGCTCTGTTGTACCAAC 59.467 52.381 0.00 0.22 37.09 3.77
237 241 1.140852 AGCAGCTCTGTTGTACCAACA 59.859 47.619 9.25 9.25 0.00 3.33
238 242 2.154462 GCAGCTCTGTTGTACCAACAT 58.846 47.619 9.96 0.00 34.97 2.71
326 330 0.953960 AGATGTTTGGTCGGTTCGGC 60.954 55.000 0.00 0.00 0.00 5.54
500 535 2.040278 TGAAAGTTGGATGGAGGACTGG 59.960 50.000 0.00 0.00 0.00 4.00
582 617 3.838565 TGGAAGCCAAACCAAACAGATA 58.161 40.909 0.00 0.00 32.93 1.98
584 619 3.826729 GGAAGCCAAACCAAACAGATAGT 59.173 43.478 0.00 0.00 0.00 2.12
585 620 4.280929 GGAAGCCAAACCAAACAGATAGTT 59.719 41.667 0.00 0.00 43.89 2.24
586 621 8.993341 TTGGAAGCCAAACCAAACAGATAGTTT 61.993 37.037 0.00 0.00 44.82 2.66
646 681 0.803117 GAGTTTAACCGAGGCAAGGC 59.197 55.000 0.00 0.00 0.00 4.35
684 719 0.230769 CGCGCATGCTAAACTAGAGC 59.769 55.000 17.13 7.23 39.65 4.09
700 735 2.359900 AGAGCAGGCATTTTCTTACGG 58.640 47.619 0.00 0.00 0.00 4.02
731 949 1.463674 GTGTATGGGGTTGGCTTCTG 58.536 55.000 0.00 0.00 0.00 3.02
764 984 0.612174 AGCCCAGACTCGTAAGCAGA 60.612 55.000 0.00 0.00 37.18 4.26
890 1123 4.344104 TCATAGGAAAGCAAGGGGAAAAG 58.656 43.478 0.00 0.00 0.00 2.27
1349 1731 2.690778 GCCTGATGCGTGTCCAACC 61.691 63.158 0.00 0.00 0.00 3.77
1361 1743 2.304761 GTGTCCAACCTAGATTGTCCCA 59.695 50.000 0.00 0.00 0.00 4.37
1366 1748 5.589050 GTCCAACCTAGATTGTCCCAAATAC 59.411 44.000 0.00 0.00 0.00 1.89
1372 1763 6.659242 ACCTAGATTGTCCCAAATACTTTGTG 59.341 38.462 0.00 0.00 38.98 3.33
1403 1794 1.605710 GATTGCTCATTCGGTCCCATG 59.394 52.381 0.00 0.00 0.00 3.66
1407 1798 0.758734 CTCATTCGGTCCCATGGCTA 59.241 55.000 6.09 0.00 0.00 3.93
1496 1891 6.094061 GTGCCAAACAAGTACTAACAAACAA 58.906 36.000 0.00 0.00 0.00 2.83
1503 1912 8.905103 AACAAGTACTAACAAACAAACATGAC 57.095 30.769 0.00 0.00 0.00 3.06
1509 1918 9.169468 GTACTAACAAACAAACATGACTCATTG 57.831 33.333 0.00 1.83 0.00 2.82
1528 1937 0.451783 GGCTTGTAATTCGGCTGTGG 59.548 55.000 0.00 0.00 0.00 4.17
1535 1944 2.200373 AATTCGGCTGTGGTTTAGCT 57.800 45.000 0.00 0.00 40.92 3.32
1538 1947 0.107831 TCGGCTGTGGTTTAGCTGTT 59.892 50.000 0.00 0.00 45.53 3.16
1540 1949 0.039165 GGCTGTGGTTTAGCTGTTGC 60.039 55.000 0.00 0.00 40.92 4.17
1547 1956 4.037446 TGTGGTTTAGCTGTTGCCTTTTAG 59.963 41.667 0.00 0.00 40.80 1.85
1553 1962 3.500343 AGCTGTTGCCTTTTAGGATGTT 58.500 40.909 0.00 0.00 37.67 2.71
1555 1964 3.614870 GCTGTTGCCTTTTAGGATGTTGG 60.615 47.826 0.00 0.00 37.67 3.77
1574 1983 1.464997 GGTCTGTCGAATTGAGTTGGC 59.535 52.381 0.00 0.00 0.00 4.52
1597 2006 0.395586 TGTGTTGCAGGTCCAAGCTT 60.396 50.000 0.00 0.00 0.00 3.74
1598 2007 0.031178 GTGTTGCAGGTCCAAGCTTG 59.969 55.000 19.93 19.93 0.00 4.01
1630 2039 1.145325 ACCGGGGACACCATAAACAAA 59.855 47.619 6.32 0.00 40.22 2.83
1825 2237 4.708421 AGAACCATGATGAATTTCCCACTG 59.292 41.667 0.00 0.00 0.00 3.66
1828 2240 2.601240 TGATGAATTTCCCACTGCCA 57.399 45.000 0.00 0.00 0.00 4.92
1853 2265 3.067320 TCCATGTATCTGTCTGCTTCTCG 59.933 47.826 0.00 0.00 0.00 4.04
1930 2342 4.634004 TGTTATGAAATGTTAGCTGGTCCG 59.366 41.667 0.00 0.00 0.00 4.79
2168 2580 2.102578 GGCATGTTTGGTTGCTCCTAT 58.897 47.619 0.00 0.00 38.88 2.57
2284 2696 3.499918 AGTCGCAAAGAAATCCAAGTCTG 59.500 43.478 0.00 0.00 0.00 3.51
2333 2745 4.972751 AGAAGGAGAAGAAGAAAGCTGT 57.027 40.909 0.00 0.00 0.00 4.40
2526 2938 7.118680 TCCGGTAAGTGTCATTCTTTTTATCAC 59.881 37.037 0.00 0.00 0.00 3.06
2646 3922 0.958822 ATTCGGTTCCAACTGTTGCC 59.041 50.000 14.94 9.86 36.65 4.52
2651 3927 2.525368 GGTTCCAACTGTTGCCCTTAT 58.475 47.619 14.94 0.00 0.00 1.73
3147 4449 5.048504 TGTCTTCAGTTGATTTGCATTCCTC 60.049 40.000 0.00 0.00 0.00 3.71
3262 4564 6.319141 ACATCTCCACAAGAAGCTAAAAAC 57.681 37.500 0.00 0.00 37.61 2.43
3303 4606 7.883229 ATATTCGCCAAAGTTTTACTTTTGG 57.117 32.000 10.76 10.76 45.38 3.28
3344 4647 7.093322 CCTTCTTTTGGGATCTTGTTATCTG 57.907 40.000 0.00 0.00 0.00 2.90
3434 4743 6.863126 AGCAATTTAAGTTATGTGTGCAAGAC 59.137 34.615 0.00 0.00 33.21 3.01
3440 4758 3.565482 AGTTATGTGTGCAAGACCTTGTG 59.435 43.478 10.96 0.00 42.31 3.33
3464 4782 6.602803 TGGTTACATTGTGATGTGCTCAATAT 59.397 34.615 0.00 0.00 45.80 1.28
3506 4825 3.311048 GCTTCTGAATTTCGTGATCCCTC 59.689 47.826 0.00 0.00 0.00 4.30
3565 4884 9.311916 CAATCATTTCTTTCAGTGGTGTTAAAA 57.688 29.630 0.00 0.00 0.00 1.52
3566 4885 9.533253 AATCATTTCTTTCAGTGGTGTTAAAAG 57.467 29.630 0.00 0.00 0.00 2.27
3567 4886 8.062065 TCATTTCTTTCAGTGGTGTTAAAAGT 57.938 30.769 0.00 0.00 0.00 2.66
3597 4916 9.158233 CCAAATTAATTTTGTGATCTTCAGCAT 57.842 29.630 10.77 0.00 42.68 3.79
3697 5034 6.207691 AGTTGCCGCATACAGAAAATTTAT 57.792 33.333 0.00 0.00 0.00 1.40
3698 5035 6.035843 AGTTGCCGCATACAGAAAATTTATG 58.964 36.000 0.00 0.00 0.00 1.90
3737 5074 8.885494 TTTGTCTGATTTGGAAAAATAACTGG 57.115 30.769 0.00 0.00 0.00 4.00
3838 5175 9.877178 AGAACAGTTCTTCTAATCGAATAATGT 57.123 29.630 10.27 0.00 36.36 2.71
4112 5452 7.311364 TGGCCGATTTTGTATTAGTTAACTC 57.689 36.000 12.39 0.00 0.00 3.01
4123 5463 8.301730 TGTATTAGTTAACTCGTGTTTCCTTG 57.698 34.615 12.39 0.00 37.59 3.61
4146 5486 2.689553 TTTCTCAGTGCTGTCACACA 57.310 45.000 0.00 0.00 45.49 3.72
4156 5496 2.051882 GTCACACACGCTGCTTGC 60.052 61.111 6.00 0.00 38.57 4.01
4174 5514 0.242825 GCTGCAACATGATGTGTGCT 59.757 50.000 23.09 0.00 41.14 4.40
4210 5550 6.869913 CCTTTCGTTAGTGGTAATGAACAGTA 59.130 38.462 0.32 0.00 41.74 2.74
4213 5553 7.821595 TCGTTAGTGGTAATGAACAGTAATG 57.178 36.000 8.23 8.23 39.30 1.90
4215 5555 6.456449 CGTTAGTGGTAATGAACAGTAATGGC 60.456 42.308 6.94 0.00 36.53 4.40
4216 5556 4.270008 AGTGGTAATGAACAGTAATGGCC 58.730 43.478 0.00 0.00 0.00 5.36
4248 5588 3.119101 CGCCTACACTTTGTGACTATCCT 60.119 47.826 4.61 0.00 36.96 3.24
4250 5590 4.631813 GCCTACACTTTGTGACTATCCTTG 59.368 45.833 4.61 0.00 36.96 3.61
4275 5615 7.504574 TGATCATATAAGTTTGACGTAGGAGGA 59.495 37.037 0.00 0.00 0.00 3.71
4283 5623 2.313317 TGACGTAGGAGGAAACTGTGT 58.687 47.619 0.00 0.00 44.43 3.72
4326 5666 9.784531 TGATTTGAATTTGAGATATACTCCCTC 57.215 33.333 0.00 0.00 44.34 4.30
4345 5685 8.414778 ACTCCCTCTATAAAGAAATGTAAGACG 58.585 37.037 0.00 0.00 0.00 4.18
4346 5686 8.529424 TCCCTCTATAAAGAAATGTAAGACGA 57.471 34.615 0.00 0.00 0.00 4.20
4428 5776 4.202781 ACCTTCACAATTGGGACCCTAATT 60.203 41.667 10.68 12.73 0.00 1.40
4429 5777 4.777366 CCTTCACAATTGGGACCCTAATTT 59.223 41.667 10.68 0.00 0.00 1.82
4430 5778 5.955355 CCTTCACAATTGGGACCCTAATTTA 59.045 40.000 10.68 0.00 0.00 1.40
4439 5787 5.326900 TGGGACCCTAATTTAGAAAACCAC 58.673 41.667 13.00 0.00 0.00 4.16
4442 5790 5.955959 GGACCCTAATTTAGAAAACCACCAT 59.044 40.000 4.96 0.00 0.00 3.55
4448 5796 8.748412 CCTAATTTAGAAAACCACCATCATTCA 58.252 33.333 4.96 0.00 0.00 2.57
4449 5797 9.793252 CTAATTTAGAAAACCACCATCATTCAG 57.207 33.333 0.00 0.00 0.00 3.02
4451 5799 7.595819 TTTAGAAAACCACCATCATTCAGTT 57.404 32.000 0.00 0.00 0.00 3.16
4456 5809 8.482128 AGAAAACCACCATCATTCAGTTTAAAA 58.518 29.630 0.00 0.00 0.00 1.52
4469 5822 7.602517 TTCAGTTTAAAAACCACCAACATTG 57.397 32.000 2.02 0.00 39.71 2.82
4524 5877 5.320723 CGATTATAGCAGTTTGACGCAAAA 58.679 37.500 6.59 0.00 35.03 2.44
4525 5878 5.965334 CGATTATAGCAGTTTGACGCAAAAT 59.035 36.000 6.59 3.58 35.03 1.82
4527 5880 7.008266 CGATTATAGCAGTTTGACGCAAAATTT 59.992 33.333 6.59 0.00 35.03 1.82
4528 5881 5.827568 ATAGCAGTTTGACGCAAAATTTG 57.172 34.783 0.57 0.57 35.03 2.32
4529 5882 3.779759 AGCAGTTTGACGCAAAATTTGA 58.220 36.364 10.26 0.00 35.03 2.69
4530 5883 3.551485 AGCAGTTTGACGCAAAATTTGAC 59.449 39.130 10.26 0.23 35.03 3.18
4532 5885 3.061271 CAGTTTGACGCAAAATTTGACGG 60.061 43.478 20.10 8.28 35.03 4.79
4533 5886 3.109619 GTTTGACGCAAAATTTGACGGA 58.890 40.909 20.10 8.83 35.03 4.69
4534 5887 3.634568 TTGACGCAAAATTTGACGGAT 57.365 38.095 20.10 6.48 35.52 4.18
4576 8833 4.248058 ACTAACGGCGCTAACTTTGTTAT 58.752 39.130 6.90 0.00 0.00 1.89
4583 8840 5.216648 GGCGCTAACTTTGTTATGTTTGAA 58.783 37.500 7.64 0.00 0.00 2.69
4586 8843 6.129457 GCGCTAACTTTGTTATGTTTGAACAG 60.129 38.462 0.00 0.00 43.04 3.16
4588 8845 7.431084 CGCTAACTTTGTTATGTTTGAACAGTT 59.569 33.333 2.77 2.60 43.04 3.16
4589 8846 9.083080 GCTAACTTTGTTATGTTTGAACAGTTT 57.917 29.630 2.77 0.00 43.04 2.66
4594 8851 7.462109 TTGTTATGTTTGAACAGTTTGCATC 57.538 32.000 2.77 0.00 43.04 3.91
4605 8862 1.173043 GTTTGCATCCATCGTTCCCA 58.827 50.000 0.00 0.00 0.00 4.37
4738 9002 3.443045 CCCCGCACCAAGCATGTC 61.443 66.667 0.00 0.00 46.13 3.06
4740 9004 2.672651 CCGCACCAAGCATGTCCA 60.673 61.111 0.00 0.00 46.13 4.02
4742 9006 2.260154 CGCACCAAGCATGTCCACA 61.260 57.895 0.00 0.00 46.13 4.17
4749 9013 1.174712 AAGCATGTCCACACCTGCAC 61.175 55.000 7.78 0.00 44.35 4.57
4750 9014 2.969806 GCATGTCCACACCTGCACG 61.970 63.158 0.00 0.00 42.19 5.34
4759 9023 2.989824 ACCTGCACGCTAGTCGGT 60.990 61.111 10.53 0.00 43.86 4.69
4761 9025 2.577112 CTGCACGCTAGTCGGTCG 60.577 66.667 10.53 0.00 43.86 4.79
4811 9075 3.146913 GCGAGCTCTGCCTCCTCT 61.147 66.667 12.85 0.00 0.00 3.69
4823 9087 1.612395 CCTCCTCTGTGGCCTCACTC 61.612 65.000 3.32 0.00 43.94 3.51
4824 9088 1.943116 CTCCTCTGTGGCCTCACTCG 61.943 65.000 3.32 0.00 43.94 4.18
4825 9089 2.279069 CCTCTGTGGCCTCACTCGT 61.279 63.158 3.32 0.00 43.94 4.18
4826 9090 1.080230 CTCTGTGGCCTCACTCGTG 60.080 63.158 3.32 0.00 43.94 4.35
4827 9091 2.047844 CTGTGGCCTCACTCGTGG 60.048 66.667 3.32 0.00 43.94 4.94
4828 9092 3.596066 CTGTGGCCTCACTCGTGGG 62.596 68.421 3.32 0.00 43.94 4.61
4833 9097 4.087892 CCTCACTCGTGGGGCCAG 62.088 72.222 4.39 0.00 45.46 4.85
4834 9098 4.087892 CTCACTCGTGGGGCCAGG 62.088 72.222 4.39 0.00 0.00 4.45
4841 9105 3.798511 GTGGGGCCAGGGCTAGAC 61.799 72.222 13.81 3.48 41.60 2.59
4844 9108 3.483869 GGGCCAGGGCTAGACCAG 61.484 72.222 19.45 9.18 42.05 4.00
4845 9109 2.365635 GGCCAGGGCTAGACCAGA 60.366 66.667 19.45 0.00 42.05 3.86
4846 9110 2.439104 GGCCAGGGCTAGACCAGAG 61.439 68.421 19.45 5.72 42.05 3.35
4847 9111 2.439104 GCCAGGGCTAGACCAGAGG 61.439 68.421 19.45 16.65 42.05 3.69
4848 9112 1.764054 CCAGGGCTAGACCAGAGGG 60.764 68.421 19.45 8.89 42.05 4.30
4849 9113 1.764054 CAGGGCTAGACCAGAGGGG 60.764 68.421 19.45 0.00 42.05 4.79
4850 9114 2.446802 GGGCTAGACCAGAGGGGG 60.447 72.222 10.77 0.00 42.91 5.40
4851 9115 2.696893 GGCTAGACCAGAGGGGGA 59.303 66.667 0.00 0.00 42.91 4.81
4852 9116 1.237458 GGCTAGACCAGAGGGGGAT 59.763 63.158 0.00 0.00 42.91 3.85
4853 9117 1.124477 GGCTAGACCAGAGGGGGATG 61.124 65.000 0.00 0.00 42.91 3.51
4854 9118 1.124477 GCTAGACCAGAGGGGGATGG 61.124 65.000 0.00 0.00 42.91 3.51
4855 9119 1.074471 TAGACCAGAGGGGGATGGC 60.074 63.158 0.00 0.00 42.91 4.40
4856 9120 1.897037 TAGACCAGAGGGGGATGGCA 61.897 60.000 0.00 0.00 42.91 4.92
4857 9121 2.693864 ACCAGAGGGGGATGGCAG 60.694 66.667 0.00 0.00 42.91 4.85
4858 9122 3.496160 CCAGAGGGGGATGGCAGG 61.496 72.222 0.00 0.00 0.00 4.85
4859 9123 2.367377 CAGAGGGGGATGGCAGGA 60.367 66.667 0.00 0.00 0.00 3.86
4860 9124 2.040043 AGAGGGGGATGGCAGGAG 60.040 66.667 0.00 0.00 0.00 3.69
4861 9125 2.040464 GAGGGGGATGGCAGGAGA 60.040 66.667 0.00 0.00 0.00 3.71
4862 9126 2.367512 AGGGGGATGGCAGGAGAC 60.368 66.667 0.00 0.00 0.00 3.36
4863 9127 3.866582 GGGGGATGGCAGGAGACG 61.867 72.222 0.00 0.00 0.00 4.18
4864 9128 3.866582 GGGGATGGCAGGAGACGG 61.867 72.222 0.00 0.00 0.00 4.79
4865 9129 3.866582 GGGATGGCAGGAGACGGG 61.867 72.222 0.00 0.00 0.00 5.28
4866 9130 2.764128 GGATGGCAGGAGACGGGA 60.764 66.667 0.00 0.00 0.00 5.14
4867 9131 2.801631 GGATGGCAGGAGACGGGAG 61.802 68.421 0.00 0.00 0.00 4.30
4868 9132 2.765807 ATGGCAGGAGACGGGAGG 60.766 66.667 0.00 0.00 0.00 4.30
4869 9133 3.317436 ATGGCAGGAGACGGGAGGA 62.317 63.158 0.00 0.00 0.00 3.71
4870 9134 3.151022 GGCAGGAGACGGGAGGAG 61.151 72.222 0.00 0.00 0.00 3.69
4871 9135 3.151022 GCAGGAGACGGGAGGAGG 61.151 72.222 0.00 0.00 0.00 4.30
4872 9136 2.684104 CAGGAGACGGGAGGAGGA 59.316 66.667 0.00 0.00 0.00 3.71
4873 9137 1.454847 CAGGAGACGGGAGGAGGAG 60.455 68.421 0.00 0.00 0.00 3.69
4874 9138 2.123640 GGAGACGGGAGGAGGAGG 60.124 72.222 0.00 0.00 0.00 4.30
4875 9139 2.123640 GAGACGGGAGGAGGAGGG 60.124 72.222 0.00 0.00 0.00 4.30
4876 9140 4.467107 AGACGGGAGGAGGAGGGC 62.467 72.222 0.00 0.00 0.00 5.19
4877 9141 4.779733 GACGGGAGGAGGAGGGCA 62.780 72.222 0.00 0.00 0.00 5.36
4878 9142 4.332543 ACGGGAGGAGGAGGGCAA 62.333 66.667 0.00 0.00 0.00 4.52
4879 9143 3.474570 CGGGAGGAGGAGGGCAAG 61.475 72.222 0.00 0.00 0.00 4.01
4880 9144 3.803162 GGGAGGAGGAGGGCAAGC 61.803 72.222 0.00 0.00 0.00 4.01
4881 9145 4.168291 GGAGGAGGAGGGCAAGCG 62.168 72.222 0.00 0.00 0.00 4.68
4882 9146 4.847444 GAGGAGGAGGGCAAGCGC 62.847 72.222 0.00 0.00 37.44 5.92
4901 9165 4.787280 CGGAGAGGAGCTGGGGGT 62.787 72.222 0.00 0.00 0.00 4.95
4902 9166 3.086600 GGAGAGGAGCTGGGGGTG 61.087 72.222 0.00 0.00 0.00 4.61
4903 9167 3.086600 GAGAGGAGCTGGGGGTGG 61.087 72.222 0.00 0.00 0.00 4.61
4958 9222 4.404654 GCGCGGCTTGTTCCCTTG 62.405 66.667 8.83 0.00 0.00 3.61
4959 9223 2.978010 CGCGGCTTGTTCCCTTGT 60.978 61.111 0.00 0.00 0.00 3.16
4960 9224 2.954611 GCGGCTTGTTCCCTTGTC 59.045 61.111 0.00 0.00 0.00 3.18
4961 9225 2.966309 GCGGCTTGTTCCCTTGTCG 61.966 63.158 0.00 0.00 0.00 4.35
4962 9226 1.301401 CGGCTTGTTCCCTTGTCGA 60.301 57.895 0.00 0.00 0.00 4.20
4963 9227 1.566018 CGGCTTGTTCCCTTGTCGAC 61.566 60.000 9.11 9.11 0.00 4.20
4964 9228 1.566018 GGCTTGTTCCCTTGTCGACG 61.566 60.000 11.62 0.00 0.00 5.12
4965 9229 1.566018 GCTTGTTCCCTTGTCGACGG 61.566 60.000 11.62 6.80 0.00 4.79
4966 9230 1.566018 CTTGTTCCCTTGTCGACGGC 61.566 60.000 11.62 0.00 0.00 5.68
4967 9231 3.110178 GTTCCCTTGTCGACGGCG 61.110 66.667 2.87 2.87 39.35 6.46
4968 9232 3.296836 TTCCCTTGTCGACGGCGA 61.297 61.111 10.67 10.67 45.71 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 1.124477 GGCGGATCAGAGGAGGGATT 61.124 60.000 0.00 0.00 0.00 3.01
157 161 2.573083 CGGCCCCAAGCACAACATT 61.573 57.895 0.00 0.00 46.50 2.71
178 182 2.122144 TGGTACAGGGGGCTGTGT 60.122 61.111 0.00 0.00 38.16 3.72
229 233 3.495100 CCCTAGCTGGATGATGTTGGTAC 60.495 52.174 0.00 0.00 38.35 3.34
230 234 2.705658 CCCTAGCTGGATGATGTTGGTA 59.294 50.000 0.00 0.00 38.35 3.25
231 235 1.492176 CCCTAGCTGGATGATGTTGGT 59.508 52.381 0.00 0.00 38.35 3.67
232 236 1.492176 ACCCTAGCTGGATGATGTTGG 59.508 52.381 0.00 0.00 38.35 3.77
234 238 4.298626 TCTAACCCTAGCTGGATGATGTT 58.701 43.478 0.00 0.00 38.35 2.71
236 240 5.395103 GCTATCTAACCCTAGCTGGATGATG 60.395 48.000 0.00 0.00 37.85 3.07
237 241 4.714308 GCTATCTAACCCTAGCTGGATGAT 59.286 45.833 0.00 1.36 37.85 2.45
238 242 4.090090 GCTATCTAACCCTAGCTGGATGA 58.910 47.826 0.00 0.00 37.85 2.92
506 541 2.060383 CCGTCTGGGGCTGAGATCA 61.060 63.158 0.00 0.00 0.00 2.92
617 652 4.058817 CTCGGTTAAACTCAGCTCAAGTT 58.941 43.478 5.38 5.38 38.59 2.66
626 661 1.880646 GCCTTGCCTCGGTTAAACTCA 60.881 52.381 0.00 0.00 0.00 3.41
646 681 1.543802 CGAGGCTAGGGATAAGAGCTG 59.456 57.143 0.00 0.00 0.00 4.24
684 719 1.463674 AGGCCGTAAGAAAATGCCTG 58.536 50.000 0.00 0.00 46.20 4.85
700 735 1.144057 CATACACCCGACCAGAGGC 59.856 63.158 0.00 0.00 0.00 4.70
731 949 2.093128 TCTGGGCTCCGTAGAATTTTCC 60.093 50.000 0.00 0.00 0.00 3.13
788 1008 5.062528 GGCCATTTGAAATTTTGGTTCTCA 58.937 37.500 0.00 0.00 0.00 3.27
854 1083 6.976925 GCTTTCCTATGATGAAACAGGAATTG 59.023 38.462 2.94 1.82 44.51 2.32
855 1084 6.664816 TGCTTTCCTATGATGAAACAGGAATT 59.335 34.615 2.94 0.00 44.51 2.17
890 1123 0.392706 CTTTGGGGGCTTTGGTGAAC 59.607 55.000 0.00 0.00 0.00 3.18
925 1301 3.110178 GAGGTTGTCCGCGAACCG 61.110 66.667 18.99 0.00 46.49 4.44
937 1313 2.364448 GGGCGGAGAGGAGAGGTT 60.364 66.667 0.00 0.00 0.00 3.50
1290 1672 3.562635 GGTACGCACTTGTGCTCC 58.437 61.111 21.17 16.32 0.00 4.70
1361 1743 9.436957 CAATCTACACTCCTACACAAAGTATTT 57.563 33.333 0.00 0.00 40.26 1.40
1366 1748 5.482908 AGCAATCTACACTCCTACACAAAG 58.517 41.667 0.00 0.00 0.00 2.77
1372 1763 4.979197 CGAATGAGCAATCTACACTCCTAC 59.021 45.833 0.00 0.00 0.00 3.18
1403 1794 2.237392 AGGGATAGCCGATCAAATAGCC 59.763 50.000 0.00 0.00 36.12 3.93
1407 1798 5.308825 CACTTAAGGGATAGCCGATCAAAT 58.691 41.667 7.53 0.00 36.12 2.32
1496 1891 6.594788 AATTACAAGCCAATGAGTCATGTT 57.405 33.333 6.34 0.00 0.00 2.71
1503 1912 2.684881 AGCCGAATTACAAGCCAATGAG 59.315 45.455 0.00 0.00 0.00 2.90
1509 1918 0.451783 CCACAGCCGAATTACAAGCC 59.548 55.000 0.00 0.00 0.00 4.35
1528 1937 5.048013 ACATCCTAAAAGGCAACAGCTAAAC 60.048 40.000 0.00 0.00 34.61 2.01
1535 1944 3.571590 ACCAACATCCTAAAAGGCAACA 58.428 40.909 0.00 0.00 34.61 3.33
1538 1947 3.181434 ACAGACCAACATCCTAAAAGGCA 60.181 43.478 0.00 0.00 34.61 4.75
1540 1949 3.684788 CGACAGACCAACATCCTAAAAGG 59.315 47.826 0.00 0.00 36.46 3.11
1547 1956 3.334691 TCAATTCGACAGACCAACATCC 58.665 45.455 0.00 0.00 0.00 3.51
1553 1962 2.766313 CCAACTCAATTCGACAGACCA 58.234 47.619 0.00 0.00 0.00 4.02
1555 1964 2.143122 TGCCAACTCAATTCGACAGAC 58.857 47.619 0.00 0.00 0.00 3.51
1574 1983 2.746269 CTTGGACCTGCAACACAATTG 58.254 47.619 3.24 3.24 0.00 2.32
1597 2006 1.560146 TCCCCGGTAATGTTGCATACA 59.440 47.619 0.00 4.56 41.97 2.29
1598 2007 1.944709 GTCCCCGGTAATGTTGCATAC 59.055 52.381 0.00 0.00 0.00 2.39
1630 2039 0.397675 TCCAGATGTGCTCCTCCGAT 60.398 55.000 0.00 0.00 0.00 4.18
1825 2237 3.004106 GCAGACAGATACATGGAAATGGC 59.996 47.826 0.00 0.00 0.00 4.40
1828 2240 5.999044 AGAAGCAGACAGATACATGGAAAT 58.001 37.500 0.00 0.00 0.00 2.17
1925 2337 4.830826 AAATTGTTCAGAGAAACGGACC 57.169 40.909 0.00 0.00 31.58 4.46
2168 2580 9.111519 TCAAAATAGGGATAGGCATGTTAGATA 57.888 33.333 0.00 0.00 0.00 1.98
2284 2696 3.744660 TCTTCTTGTCCTTCTTCTTGGC 58.255 45.455 0.00 0.00 0.00 4.52
2333 2745 2.167487 GGCAAAGAAGGGTTGACAACAA 59.833 45.455 19.58 0.00 33.91 2.83
2617 3893 8.603242 ACAGTTGGAACCGAATATTATATGAC 57.397 34.615 0.00 0.00 0.00 3.06
2651 3927 9.653516 AGAGATTCATCACCTAAAGAGAAGATA 57.346 33.333 0.00 0.00 0.00 1.98
3077 4379 2.029200 TGTGCACATTGCCCTTGTATTG 60.029 45.455 17.42 0.00 44.23 1.90
3262 4564 6.025896 GCGAATATAACATCTGATGGCAATG 58.974 40.000 20.83 0.00 33.60 2.82
3303 4606 4.786425 AGAAGGGGACAAGAATATTCAGC 58.214 43.478 17.56 3.73 0.00 4.26
3434 4743 4.797471 CACATCACAATGTAACCACAAGG 58.203 43.478 0.00 0.00 44.41 3.61
3440 4758 4.764679 TTGAGCACATCACAATGTAACC 57.235 40.909 0.00 0.00 44.41 2.85
3454 4772 4.746729 TGCCACAAAATGATATTGAGCAC 58.253 39.130 0.00 0.00 36.45 4.40
3464 4782 3.401182 GCAAGGAAATGCCACAAAATGA 58.599 40.909 0.00 0.00 40.49 2.57
3532 4851 6.292488 CCACTGAAAGAAATGATTGTGTTTGC 60.292 38.462 0.00 0.00 37.43 3.68
3597 4916 3.557185 CGCAGCAGCAAGATAATCACTTA 59.443 43.478 0.82 0.00 42.27 2.24
3697 5034 8.408043 AATCAGACAAAGAACATTCCATAACA 57.592 30.769 0.00 0.00 0.00 2.41
3698 5035 9.132521 CAAATCAGACAAAGAACATTCCATAAC 57.867 33.333 0.00 0.00 0.00 1.89
3734 5071 1.331138 GTCGTCCTCGTCATCTACCAG 59.669 57.143 0.00 0.00 38.33 4.00
3737 5074 1.005137 GTCGTCGTCCTCGTCATCTAC 60.005 57.143 0.00 0.00 38.33 2.59
3838 5175 4.574421 CCTAAGTGTGTGTGTGACATCAAA 59.426 41.667 0.00 0.00 36.78 2.69
4112 5452 4.142469 ACTGAGAAAAACCAAGGAAACACG 60.142 41.667 0.00 0.00 0.00 4.49
4123 5463 2.682856 TGTGACAGCACTGAGAAAAACC 59.317 45.455 4.31 0.00 45.36 3.27
4156 5496 3.189910 AGTTAGCACACATCATGTTGCAG 59.810 43.478 20.22 0.55 40.64 4.41
4174 5514 2.543777 AACGAAAGGCTGCTCAGTTA 57.456 45.000 0.00 0.00 0.00 2.24
4248 5588 8.141909 CCTCCTACGTCAAACTTATATGATCAA 58.858 37.037 0.00 0.00 0.00 2.57
4250 5590 7.883217 TCCTCCTACGTCAAACTTATATGATC 58.117 38.462 0.00 0.00 0.00 2.92
4340 5680 9.680315 CTCCGTAAAGAAATATAAGATCGTCTT 57.320 33.333 5.74 5.74 40.35 3.01
4341 5681 8.298140 CCTCCGTAAAGAAATATAAGATCGTCT 58.702 37.037 0.00 0.00 0.00 4.18
4342 5682 7.541437 CCCTCCGTAAAGAAATATAAGATCGTC 59.459 40.741 0.00 0.00 0.00 4.20
4343 5683 7.232127 TCCCTCCGTAAAGAAATATAAGATCGT 59.768 37.037 0.00 0.00 0.00 3.73
4344 5684 7.600065 TCCCTCCGTAAAGAAATATAAGATCG 58.400 38.462 0.00 0.00 0.00 3.69
4345 5685 8.586744 ACTCCCTCCGTAAAGAAATATAAGATC 58.413 37.037 0.00 0.00 0.00 2.75
4346 5686 8.493787 ACTCCCTCCGTAAAGAAATATAAGAT 57.506 34.615 0.00 0.00 0.00 2.40
4406 5750 3.449746 TTAGGGTCCCAATTGTGAAGG 57.550 47.619 11.55 0.00 0.00 3.46
4407 5751 6.889722 TCTAAATTAGGGTCCCAATTGTGAAG 59.110 38.462 11.55 9.76 0.00 3.02
4408 5752 6.795590 TCTAAATTAGGGTCCCAATTGTGAA 58.204 36.000 11.55 1.87 0.00 3.18
4409 5753 6.395780 TCTAAATTAGGGTCCCAATTGTGA 57.604 37.500 11.55 11.88 0.00 3.58
4412 5756 7.038658 TGGTTTTCTAAATTAGGGTCCCAATTG 60.039 37.037 11.55 0.00 0.00 2.32
4413 5757 7.020009 TGGTTTTCTAAATTAGGGTCCCAATT 58.980 34.615 11.55 11.06 0.00 2.32
4415 5759 5.776208 GTGGTTTTCTAAATTAGGGTCCCAA 59.224 40.000 11.55 2.83 0.00 4.12
4416 5760 5.326900 GTGGTTTTCTAAATTAGGGTCCCA 58.673 41.667 11.55 0.00 0.00 4.37
4428 5776 7.595819 AAACTGAATGATGGTGGTTTTCTAA 57.404 32.000 0.00 0.00 0.00 2.10
4429 5777 8.698973 TTAAACTGAATGATGGTGGTTTTCTA 57.301 30.769 0.00 0.00 0.00 2.10
4430 5778 7.595819 TTAAACTGAATGATGGTGGTTTTCT 57.404 32.000 0.00 0.00 0.00 2.52
4439 5787 6.520272 TGGTGGTTTTTAAACTGAATGATGG 58.480 36.000 5.43 0.00 38.89 3.51
4442 5790 6.936279 TGTTGGTGGTTTTTAAACTGAATGA 58.064 32.000 5.43 0.00 38.89 2.57
4448 5796 6.976636 CACAATGTTGGTGGTTTTTAAACT 57.023 33.333 5.43 0.00 38.89 2.66
4541 5894 2.202960 TTAGTACATGCGGGCGGC 60.203 61.111 10.44 10.44 43.96 6.53
4542 5895 2.235016 CGTTAGTACATGCGGGCGG 61.235 63.158 0.00 0.00 0.00 6.13
4543 5896 2.235016 CCGTTAGTACATGCGGGCG 61.235 63.158 12.28 0.00 40.45 6.13
4544 5897 2.531376 GCCGTTAGTACATGCGGGC 61.531 63.158 18.76 10.49 43.90 6.13
4545 5898 2.235016 CGCCGTTAGTACATGCGGG 61.235 63.158 18.76 8.99 43.90 6.13
4546 5899 2.867091 GCGCCGTTAGTACATGCGG 61.867 63.158 14.80 14.80 42.25 5.69
4547 5900 0.593008 TAGCGCCGTTAGTACATGCG 60.593 55.000 2.29 2.96 43.80 4.73
4549 5902 2.805845 AGTTAGCGCCGTTAGTACATG 58.194 47.619 2.29 0.00 0.00 3.21
4550 5903 3.515330 AAGTTAGCGCCGTTAGTACAT 57.485 42.857 2.29 0.00 0.00 2.29
4551 5904 2.988493 CAAAGTTAGCGCCGTTAGTACA 59.012 45.455 2.29 0.00 0.00 2.90
4552 5905 2.989166 ACAAAGTTAGCGCCGTTAGTAC 59.011 45.455 2.29 0.00 0.00 2.73
4576 8833 4.619973 GATGGATGCAAACTGTTCAAACA 58.380 39.130 0.00 0.00 37.37 2.83
4583 8840 1.812571 GGAACGATGGATGCAAACTGT 59.187 47.619 0.00 0.00 0.00 3.55
4586 8843 1.173043 TGGGAACGATGGATGCAAAC 58.827 50.000 0.00 0.00 0.00 2.93
4588 8845 1.916506 TTTGGGAACGATGGATGCAA 58.083 45.000 0.00 0.00 0.00 4.08
4589 8846 1.916506 TTTTGGGAACGATGGATGCA 58.083 45.000 0.00 0.00 0.00 3.96
4738 9002 1.738099 GACTAGCGTGCAGGTGTGG 60.738 63.158 8.40 0.82 0.00 4.17
4740 9004 2.258591 CGACTAGCGTGCAGGTGT 59.741 61.111 8.40 5.04 34.64 4.16
4742 9006 2.989824 ACCGACTAGCGTGCAGGT 60.990 61.111 8.40 0.00 38.67 4.00
4794 9058 3.146913 AGAGGAGGCAGAGCTCGC 61.147 66.667 18.35 18.35 0.00 5.03
4811 9075 3.625897 CCCACGAGTGAGGCCACA 61.626 66.667 5.01 0.25 45.54 4.17
4824 9088 3.798511 GTCTAGCCCTGGCCCCAC 61.799 72.222 4.13 0.00 43.17 4.61
4827 9091 3.483869 CTGGTCTAGCCCTGGCCC 61.484 72.222 4.13 0.00 43.17 5.80
4828 9092 2.365635 TCTGGTCTAGCCCTGGCC 60.366 66.667 4.13 0.00 43.17 5.36
4829 9093 2.439104 CCTCTGGTCTAGCCCTGGC 61.439 68.421 0.00 0.00 42.33 4.85
4830 9094 1.764054 CCCTCTGGTCTAGCCCTGG 60.764 68.421 0.00 0.00 36.04 4.45
4831 9095 1.764054 CCCCTCTGGTCTAGCCCTG 60.764 68.421 0.00 0.00 36.04 4.45
4832 9096 2.699496 CCCCTCTGGTCTAGCCCT 59.301 66.667 0.00 0.00 36.04 5.19
4833 9097 2.333695 ATCCCCCTCTGGTCTAGCCC 62.334 65.000 1.42 0.00 36.04 5.19
4834 9098 1.124477 CATCCCCCTCTGGTCTAGCC 61.124 65.000 0.00 0.00 37.90 3.93
4835 9099 1.124477 CCATCCCCCTCTGGTCTAGC 61.124 65.000 0.00 0.00 0.00 3.42
4836 9100 1.124477 GCCATCCCCCTCTGGTCTAG 61.124 65.000 0.00 0.00 34.86 2.43
4837 9101 1.074471 GCCATCCCCCTCTGGTCTA 60.074 63.158 0.00 0.00 34.86 2.59
4838 9102 2.367512 GCCATCCCCCTCTGGTCT 60.368 66.667 0.00 0.00 34.86 3.85
4839 9103 2.692368 TGCCATCCCCCTCTGGTC 60.692 66.667 0.00 0.00 34.86 4.02
4840 9104 2.693864 CTGCCATCCCCCTCTGGT 60.694 66.667 0.00 0.00 34.86 4.00
4841 9105 3.496160 CCTGCCATCCCCCTCTGG 61.496 72.222 0.00 0.00 35.53 3.86
4842 9106 2.367377 TCCTGCCATCCCCCTCTG 60.367 66.667 0.00 0.00 0.00 3.35
4843 9107 2.040043 CTCCTGCCATCCCCCTCT 60.040 66.667 0.00 0.00 0.00 3.69
4844 9108 2.040464 TCTCCTGCCATCCCCCTC 60.040 66.667 0.00 0.00 0.00 4.30
4845 9109 2.367512 GTCTCCTGCCATCCCCCT 60.368 66.667 0.00 0.00 0.00 4.79
4846 9110 3.866582 CGTCTCCTGCCATCCCCC 61.867 72.222 0.00 0.00 0.00 5.40
4847 9111 3.866582 CCGTCTCCTGCCATCCCC 61.867 72.222 0.00 0.00 0.00 4.81
4848 9112 3.866582 CCCGTCTCCTGCCATCCC 61.867 72.222 0.00 0.00 0.00 3.85
4849 9113 2.764128 TCCCGTCTCCTGCCATCC 60.764 66.667 0.00 0.00 0.00 3.51
4850 9114 2.801631 CCTCCCGTCTCCTGCCATC 61.802 68.421 0.00 0.00 0.00 3.51
4851 9115 2.765807 CCTCCCGTCTCCTGCCAT 60.766 66.667 0.00 0.00 0.00 4.40
4852 9116 3.965026 CTCCTCCCGTCTCCTGCCA 62.965 68.421 0.00 0.00 0.00 4.92
4853 9117 3.151022 CTCCTCCCGTCTCCTGCC 61.151 72.222 0.00 0.00 0.00 4.85
4854 9118 3.151022 CCTCCTCCCGTCTCCTGC 61.151 72.222 0.00 0.00 0.00 4.85
4855 9119 1.454847 CTCCTCCTCCCGTCTCCTG 60.455 68.421 0.00 0.00 0.00 3.86
4856 9120 2.695970 CCTCCTCCTCCCGTCTCCT 61.696 68.421 0.00 0.00 0.00 3.69
4857 9121 2.123640 CCTCCTCCTCCCGTCTCC 60.124 72.222 0.00 0.00 0.00 3.71
4858 9122 2.123640 CCCTCCTCCTCCCGTCTC 60.124 72.222 0.00 0.00 0.00 3.36
4859 9123 4.467107 GCCCTCCTCCTCCCGTCT 62.467 72.222 0.00 0.00 0.00 4.18
4860 9124 4.779733 TGCCCTCCTCCTCCCGTC 62.780 72.222 0.00 0.00 0.00 4.79
4861 9125 4.332543 TTGCCCTCCTCCTCCCGT 62.333 66.667 0.00 0.00 0.00 5.28
4862 9126 3.474570 CTTGCCCTCCTCCTCCCG 61.475 72.222 0.00 0.00 0.00 5.14
4863 9127 3.803162 GCTTGCCCTCCTCCTCCC 61.803 72.222 0.00 0.00 0.00 4.30
4864 9128 4.168291 CGCTTGCCCTCCTCCTCC 62.168 72.222 0.00 0.00 0.00 4.30
4865 9129 4.847444 GCGCTTGCCCTCCTCCTC 62.847 72.222 0.00 0.00 0.00 3.71
4884 9148 4.787280 ACCCCCAGCTCCTCTCCG 62.787 72.222 0.00 0.00 0.00 4.63
4885 9149 3.086600 CACCCCCAGCTCCTCTCC 61.087 72.222 0.00 0.00 0.00 3.71
4886 9150 3.086600 CCACCCCCAGCTCCTCTC 61.087 72.222 0.00 0.00 0.00 3.20
4941 9205 4.404654 CAAGGGAACAAGCCGCGC 62.405 66.667 0.00 0.00 0.00 6.86
4942 9206 2.966309 GACAAGGGAACAAGCCGCG 61.966 63.158 0.00 0.00 0.00 6.46
4943 9207 2.954611 GACAAGGGAACAAGCCGC 59.045 61.111 0.00 0.00 0.00 6.53
4944 9208 1.301401 TCGACAAGGGAACAAGCCG 60.301 57.895 0.00 0.00 0.00 5.52
4945 9209 1.566018 CGTCGACAAGGGAACAAGCC 61.566 60.000 17.16 0.00 0.00 4.35
4946 9210 1.566018 CCGTCGACAAGGGAACAAGC 61.566 60.000 17.16 0.00 34.67 4.01
4947 9211 1.566018 GCCGTCGACAAGGGAACAAG 61.566 60.000 17.16 0.00 34.67 3.16
4948 9212 1.595929 GCCGTCGACAAGGGAACAA 60.596 57.895 17.16 0.00 34.67 2.83
4949 9213 2.029964 GCCGTCGACAAGGGAACA 59.970 61.111 17.16 0.00 34.67 3.18
4950 9214 3.110178 CGCCGTCGACAAGGGAAC 61.110 66.667 17.16 0.00 38.10 3.62
4951 9215 3.296836 TCGCCGTCGACAAGGGAA 61.297 61.111 17.16 2.67 40.21 3.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.