Multiple sequence alignment - TraesCS2B01G356100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G356100 chr2B 100.000 3400 0 0 1 3400 508216002 508212603 0.000000e+00 6279.0
1 TraesCS2B01G356100 chr2B 91.096 730 63 2 1823 2551 508182925 508182197 0.000000e+00 987.0
2 TraesCS2B01G356100 chr2B 88.525 793 82 5 2610 3400 508037309 508036524 0.000000e+00 952.0
3 TraesCS2B01G356100 chr2B 87.957 739 68 14 1808 2530 507911709 507910976 0.000000e+00 852.0
4 TraesCS2B01G356100 chr2B 89.490 647 52 5 822 1459 508193399 508192760 0.000000e+00 804.0
5 TraesCS2B01G356100 chr2B 87.838 592 42 12 1180 1744 507912309 507911721 0.000000e+00 667.0
6 TraesCS2B01G356100 chr2B 94.695 377 14 2 773 1143 507912693 507912317 6.320000e-162 580.0
7 TraesCS2B01G356100 chr2B 88.435 294 25 2 1455 1748 508183220 508182936 2.510000e-91 346.0
8 TraesCS2B01G356100 chr2B 93.750 48 2 1 1747 1793 148242191 148242238 1.690000e-08 71.3
9 TraesCS2B01G356100 chr2A 92.231 1995 143 8 1417 3400 555883989 555885982 0.000000e+00 2815.0
10 TraesCS2B01G356100 chr2A 89.452 986 67 8 772 1748 555887339 555888296 0.000000e+00 1210.0
11 TraesCS2B01G356100 chr2A 90.095 737 65 4 1823 2551 555888308 555889044 0.000000e+00 950.0
12 TraesCS2B01G356100 chr2A 87.327 797 91 6 2606 3400 556511802 556512590 0.000000e+00 904.0
13 TraesCS2B01G356100 chr2A 91.463 656 33 11 773 1422 556986279 556986917 0.000000e+00 880.0
14 TraesCS2B01G356100 chr2A 91.225 661 20 9 772 1422 555883243 555883875 0.000000e+00 865.0
15 TraesCS2B01G356100 chr2A 87.198 703 70 9 1823 2516 556987319 556988010 0.000000e+00 782.0
16 TraesCS2B01G356100 chr2A 88.663 344 34 4 1982 2325 556378767 556379105 6.790000e-112 414.0
17 TraesCS2B01G356100 chr2A 87.742 310 31 5 1445 1748 556987000 556987308 4.170000e-94 355.0
18 TraesCS2B01G356100 chr2A 87.313 268 25 3 331 597 732004024 732003765 7.130000e-77 298.0
19 TraesCS2B01G356100 chr2A 78.571 210 36 4 1213 1413 451013338 451013129 2.750000e-26 130.0
20 TraesCS2B01G356100 chr2A 88.732 71 8 0 3314 3384 613330928 613330858 1.680000e-13 87.9
21 TraesCS2B01G356100 chr2D 93.939 924 49 5 1784 2700 430440521 430439598 0.000000e+00 1389.0
22 TraesCS2B01G356100 chr2D 89.959 986 59 10 772 1748 430434268 430433314 0.000000e+00 1236.0
23 TraesCS2B01G356100 chr2D 93.030 703 47 2 2699 3400 430436374 430435673 0.000000e+00 1026.0
24 TraesCS2B01G356100 chr2D 91.962 734 53 3 1823 2551 430433303 430432571 0.000000e+00 1024.0
25 TraesCS2B01G356100 chr2D 92.846 657 32 7 772 1422 430023097 430022450 0.000000e+00 939.0
26 TraesCS2B01G356100 chr2D 87.516 793 90 6 2610 3400 430241985 430241200 0.000000e+00 907.0
27 TraesCS2B01G356100 chr2D 86.968 729 69 14 1823 2530 430022022 430021299 0.000000e+00 797.0
28 TraesCS2B01G356100 chr2D 89.711 622 26 14 772 1379 430442064 430441467 0.000000e+00 760.0
29 TraesCS2B01G356100 chr2D 88.482 382 23 8 1411 1788 430441005 430440641 3.110000e-120 442.0
30 TraesCS2B01G356100 chr2D 90.237 338 26 5 1420 1751 430022366 430022030 5.210000e-118 435.0
31 TraesCS2B01G356100 chr2D 86.752 234 23 6 874 1102 340510867 340511097 1.570000e-63 254.0
32 TraesCS2B01G356100 chr2D 88.000 175 14 2 583 752 430442226 430442054 2.070000e-47 200.0
33 TraesCS2B01G356100 chr2D 95.833 48 1 1 1750 1796 535105569 535105616 3.640000e-10 76.8
34 TraesCS2B01G356100 chr3D 91.667 264 18 2 331 592 22976637 22976376 2.490000e-96 363.0
35 TraesCS2B01G356100 chrUn 89.655 261 24 3 334 592 37061955 37061696 2.530000e-86 329.0
36 TraesCS2B01G356100 chrUn 92.157 51 3 1 1747 1796 48473119 48473169 1.690000e-08 71.3
37 TraesCS2B01G356100 chr4B 88.931 262 25 3 331 589 600519095 600519355 1.520000e-83 320.0
38 TraesCS2B01G356100 chr4B 98.462 65 1 0 1 65 104810092 104810156 7.710000e-22 115.0
39 TraesCS2B01G356100 chr4B 97.059 68 2 0 1 68 666660221 666660154 7.710000e-22 115.0
40 TraesCS2B01G356100 chr4B 97.059 68 2 0 1 68 666696847 666696780 7.710000e-22 115.0
41 TraesCS2B01G356100 chr4B 98.413 63 1 0 1 63 18780270 18780332 9.970000e-21 111.0
42 TraesCS2B01G356100 chr6A 88.327 257 30 0 333 589 33298918 33298662 3.300000e-80 309.0
43 TraesCS2B01G356100 chr6A 87.786 262 29 2 331 589 91432478 91432739 1.530000e-78 303.0
44 TraesCS2B01G356100 chr7D 90.789 228 19 1 331 558 155299539 155299314 1.530000e-78 303.0
45 TraesCS2B01G356100 chr7D 92.982 57 4 0 275 331 87367258 87367202 2.170000e-12 84.2
46 TraesCS2B01G356100 chr3A 89.069 247 22 4 88 329 714117586 714117832 5.510000e-78 302.0
47 TraesCS2B01G356100 chr7B 87.361 269 23 8 65 328 7436979 7437241 7.130000e-77 298.0
48 TraesCS2B01G356100 chr7B 84.444 270 30 8 69 327 12959216 12959484 4.350000e-64 255.0
49 TraesCS2B01G356100 chr7B 98.485 66 1 0 1 66 48250473 48250538 2.140000e-22 117.0
50 TraesCS2B01G356100 chr5B 87.854 247 25 4 88 329 345538887 345538641 5.550000e-73 285.0
51 TraesCS2B01G356100 chr5B 98.485 66 1 0 1 66 352140483 352140548 2.140000e-22 117.0
52 TraesCS2B01G356100 chr5A 89.083 229 25 0 331 559 631861322 631861550 5.550000e-73 285.0
53 TraesCS2B01G356100 chr5A 84.783 92 11 2 240 331 42739381 42739293 4.670000e-14 89.8
54 TraesCS2B01G356100 chr5A 93.878 49 2 1 1750 1797 707806578 707806530 4.710000e-09 73.1
55 TraesCS2B01G356100 chr5A 86.441 59 5 3 1854 1910 540321099 540321156 1.020000e-05 62.1
56 TraesCS2B01G356100 chr4D 87.251 251 27 4 334 584 485410312 485410067 7.180000e-72 281.0
57 TraesCS2B01G356100 chr5D 92.857 182 13 0 149 330 41828145 41827964 7.230000e-67 265.0
58 TraesCS2B01G356100 chr7A 84.270 267 34 6 71 329 76893816 76894082 1.570000e-63 254.0
59 TraesCS2B01G356100 chr1D 75.862 406 74 15 2905 3296 8006044 8005649 5.790000e-43 185.0
60 TraesCS2B01G356100 chr1D 93.617 47 2 1 1748 1793 184473458 184473412 6.090000e-08 69.4
61 TraesCS2B01G356100 chr1B 80.603 232 41 3 3067 3296 10273278 10273049 3.490000e-40 176.0
62 TraesCS2B01G356100 chr1A 76.875 320 55 9 2990 3296 9651764 9651451 2.710000e-36 163.0
63 TraesCS2B01G356100 chr1A 93.750 48 2 1 1750 1796 206793778 206793731 1.690000e-08 71.3
64 TraesCS2B01G356100 chr6D 79.426 209 41 2 3067 3275 379559818 379559612 2.730000e-31 147.0
65 TraesCS2B01G356100 chr6D 95.745 47 1 1 1750 1795 419274693 419274647 1.310000e-09 75.0
66 TraesCS2B01G356100 chr6B 98.413 63 1 0 1 63 717541077 717541139 9.970000e-21 111.0
67 TraesCS2B01G356100 chr4A 94.521 73 2 2 1 73 540057626 540057556 9.970000e-21 111.0
68 TraesCS2B01G356100 chr3B 96.970 66 2 0 1 66 740514066 740514001 9.970000e-21 111.0
69 TraesCS2B01G356100 chr3B 84.884 86 12 1 239 324 19098600 19098516 6.040000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G356100 chr2B 508212603 508216002 3399 True 6279.000000 6279 100.000000 1 3400 1 chr2B.!!$R3 3399
1 TraesCS2B01G356100 chr2B 508036524 508037309 785 True 952.000000 952 88.525000 2610 3400 1 chr2B.!!$R1 790
2 TraesCS2B01G356100 chr2B 508192760 508193399 639 True 804.000000 804 89.490000 822 1459 1 chr2B.!!$R2 637
3 TraesCS2B01G356100 chr2B 507910976 507912693 1717 True 699.666667 852 90.163333 773 2530 3 chr2B.!!$R4 1757
4 TraesCS2B01G356100 chr2B 508182197 508183220 1023 True 666.500000 987 89.765500 1455 2551 2 chr2B.!!$R5 1096
5 TraesCS2B01G356100 chr2A 555883243 555889044 5801 False 1460.000000 2815 90.750750 772 3400 4 chr2A.!!$F3 2628
6 TraesCS2B01G356100 chr2A 556511802 556512590 788 False 904.000000 904 87.327000 2606 3400 1 chr2A.!!$F2 794
7 TraesCS2B01G356100 chr2A 556986279 556988010 1731 False 672.333333 880 88.801000 773 2516 3 chr2A.!!$F4 1743
8 TraesCS2B01G356100 chr2D 430241200 430241985 785 True 907.000000 907 87.516000 2610 3400 1 chr2D.!!$R1 790
9 TraesCS2B01G356100 chr2D 430432571 430442226 9655 True 868.142857 1389 90.726143 583 3400 7 chr2D.!!$R3 2817
10 TraesCS2B01G356100 chr2D 430021299 430023097 1798 True 723.666667 939 90.017000 772 2530 3 chr2D.!!$R2 1758

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
539 540 0.025513 GTTGATCGAGCGCACATGAC 59.974 55.0 11.47 0.0 0.00 3.06 F
1143 1185 0.106268 TGTTCCTTGGCTCCTTGCAA 60.106 50.0 0.00 0.0 45.15 4.08 F
1170 1212 0.307453 TTGCCATATCATTCGCACGC 59.693 50.0 0.00 0.0 0.00 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1604 2109 0.392863 CAGCGGTGATGGGATGAACA 60.393 55.000 9.50 0.00 0.00 3.18 R
2234 2898 1.135139 GACAGCGCTATCAGGTTCTGA 59.865 52.381 10.99 0.00 44.99 3.27 R
3030 6930 1.835483 GATCGGCGCCACTGCATAAG 61.835 60.000 28.98 6.54 37.32 1.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.350219 TGGTTGTTAGATGGAAGGAGC 57.650 47.619 0.00 0.00 0.00 4.70
23 24 2.280628 GGTTGTTAGATGGAAGGAGCG 58.719 52.381 0.00 0.00 0.00 5.03
24 25 2.354805 GGTTGTTAGATGGAAGGAGCGT 60.355 50.000 0.00 0.00 0.00 5.07
25 26 2.672961 TGTTAGATGGAAGGAGCGTG 57.327 50.000 0.00 0.00 0.00 5.34
26 27 1.899814 TGTTAGATGGAAGGAGCGTGT 59.100 47.619 0.00 0.00 0.00 4.49
27 28 3.093814 TGTTAGATGGAAGGAGCGTGTA 58.906 45.455 0.00 0.00 0.00 2.90
28 29 3.512329 TGTTAGATGGAAGGAGCGTGTAA 59.488 43.478 0.00 0.00 0.00 2.41
29 30 4.020928 TGTTAGATGGAAGGAGCGTGTAAA 60.021 41.667 0.00 0.00 0.00 2.01
30 31 3.695830 AGATGGAAGGAGCGTGTAAAA 57.304 42.857 0.00 0.00 0.00 1.52
31 32 3.600388 AGATGGAAGGAGCGTGTAAAAG 58.400 45.455 0.00 0.00 0.00 2.27
32 33 1.519408 TGGAAGGAGCGTGTAAAAGC 58.481 50.000 0.00 0.00 0.00 3.51
33 34 0.442699 GGAAGGAGCGTGTAAAAGCG 59.557 55.000 0.00 0.00 38.61 4.68
34 35 1.145803 GAAGGAGCGTGTAAAAGCGT 58.854 50.000 0.00 0.00 38.61 5.07
35 36 0.865769 AAGGAGCGTGTAAAAGCGTG 59.134 50.000 0.00 0.00 38.61 5.34
36 37 0.249741 AGGAGCGTGTAAAAGCGTGT 60.250 50.000 0.00 0.00 38.61 4.49
37 38 1.000060 AGGAGCGTGTAAAAGCGTGTA 60.000 47.619 0.00 0.00 38.61 2.90
38 39 1.794116 GGAGCGTGTAAAAGCGTGTAA 59.206 47.619 0.00 0.00 38.61 2.41
39 40 2.221517 GGAGCGTGTAAAAGCGTGTAAA 59.778 45.455 0.00 0.00 38.61 2.01
40 41 3.120442 GGAGCGTGTAAAAGCGTGTAAAT 60.120 43.478 0.00 0.00 38.61 1.40
41 42 4.061570 AGCGTGTAAAAGCGTGTAAATC 57.938 40.909 0.00 0.00 38.61 2.17
42 43 3.744426 AGCGTGTAAAAGCGTGTAAATCT 59.256 39.130 0.00 0.00 38.61 2.40
43 44 4.212636 AGCGTGTAAAAGCGTGTAAATCTT 59.787 37.500 0.00 0.00 38.61 2.40
44 45 4.907582 GCGTGTAAAAGCGTGTAAATCTTT 59.092 37.500 0.00 0.00 0.00 2.52
45 46 5.164320 GCGTGTAAAAGCGTGTAAATCTTTG 60.164 40.000 0.00 0.00 31.21 2.77
46 47 5.905181 CGTGTAAAAGCGTGTAAATCTTTGT 59.095 36.000 0.00 0.00 31.21 2.83
47 48 7.064674 CGTGTAAAAGCGTGTAAATCTTTGTA 58.935 34.615 0.00 0.00 31.21 2.41
48 49 7.742963 CGTGTAAAAGCGTGTAAATCTTTGTAT 59.257 33.333 0.00 0.00 31.21 2.29
49 50 8.837059 GTGTAAAAGCGTGTAAATCTTTGTATG 58.163 33.333 0.00 0.00 31.21 2.39
50 51 8.561212 TGTAAAAGCGTGTAAATCTTTGTATGT 58.439 29.630 0.00 0.00 31.21 2.29
51 52 9.047871 GTAAAAGCGTGTAAATCTTTGTATGTC 57.952 33.333 0.00 0.00 31.21 3.06
52 53 7.435068 AAAGCGTGTAAATCTTTGTATGTCT 57.565 32.000 0.00 0.00 0.00 3.41
53 54 8.542497 AAAGCGTGTAAATCTTTGTATGTCTA 57.458 30.769 0.00 0.00 0.00 2.59
54 55 7.757097 AGCGTGTAAATCTTTGTATGTCTAG 57.243 36.000 0.00 0.00 0.00 2.43
55 56 6.255887 AGCGTGTAAATCTTTGTATGTCTAGC 59.744 38.462 0.00 0.00 0.00 3.42
56 57 6.035650 GCGTGTAAATCTTTGTATGTCTAGCA 59.964 38.462 0.00 0.00 0.00 3.49
57 58 7.254455 GCGTGTAAATCTTTGTATGTCTAGCAT 60.254 37.037 5.25 5.25 41.42 3.79
58 59 8.604035 CGTGTAAATCTTTGTATGTCTAGCATT 58.396 33.333 5.22 0.00 38.94 3.56
67 68 9.941664 CTTTGTATGTCTAGCATTTTTGATAGG 57.058 33.333 5.22 0.00 38.94 2.57
68 69 7.496529 TGTATGTCTAGCATTTTTGATAGGC 57.503 36.000 5.22 0.00 38.94 3.93
69 70 6.486657 TGTATGTCTAGCATTTTTGATAGGCC 59.513 38.462 0.00 0.00 38.94 5.19
70 71 3.876914 TGTCTAGCATTTTTGATAGGCCG 59.123 43.478 0.00 0.00 32.06 6.13
71 72 3.251004 GTCTAGCATTTTTGATAGGCCGG 59.749 47.826 0.00 0.00 0.00 6.13
72 73 0.746659 AGCATTTTTGATAGGCCGGC 59.253 50.000 21.18 21.18 0.00 6.13
73 74 0.746659 GCATTTTTGATAGGCCGGCT 59.253 50.000 28.56 15.07 0.00 5.52
74 75 1.536709 GCATTTTTGATAGGCCGGCTG 60.537 52.381 28.56 13.63 0.00 4.85
75 76 1.750778 CATTTTTGATAGGCCGGCTGT 59.249 47.619 28.56 16.88 0.00 4.40
76 77 1.173043 TTTTTGATAGGCCGGCTGTG 58.827 50.000 28.56 0.00 0.00 3.66
77 78 1.312371 TTTTGATAGGCCGGCTGTGC 61.312 55.000 28.56 14.33 0.00 4.57
78 79 4.529219 TGATAGGCCGGCTGTGCG 62.529 66.667 28.56 0.00 0.00 5.34
79 80 4.221422 GATAGGCCGGCTGTGCGA 62.221 66.667 28.56 5.98 0.00 5.10
80 81 4.227134 ATAGGCCGGCTGTGCGAG 62.227 66.667 28.56 0.00 0.00 5.03
89 90 4.103103 CTGTGCGAGCCTCGTCGA 62.103 66.667 16.50 0.00 42.85 4.20
90 91 3.610791 CTGTGCGAGCCTCGTCGAA 62.611 63.158 16.50 0.00 42.85 3.71
91 92 3.173240 GTGCGAGCCTCGTCGAAC 61.173 66.667 16.50 5.87 41.22 3.95
92 93 3.666253 TGCGAGCCTCGTCGAACA 61.666 61.111 16.50 1.37 42.85 3.18
93 94 3.173240 GCGAGCCTCGTCGAACAC 61.173 66.667 16.50 0.00 42.85 3.32
94 95 2.504244 CGAGCCTCGTCGAACACC 60.504 66.667 5.82 0.00 42.85 4.16
95 96 2.649034 GAGCCTCGTCGAACACCA 59.351 61.111 0.00 0.00 0.00 4.17
96 97 1.006571 GAGCCTCGTCGAACACCAA 60.007 57.895 0.00 0.00 0.00 3.67
97 98 1.282930 GAGCCTCGTCGAACACCAAC 61.283 60.000 0.00 0.00 0.00 3.77
98 99 1.300697 GCCTCGTCGAACACCAACT 60.301 57.895 0.00 0.00 0.00 3.16
99 100 1.557443 GCCTCGTCGAACACCAACTG 61.557 60.000 0.00 0.00 0.00 3.16
100 101 0.249322 CCTCGTCGAACACCAACTGT 60.249 55.000 0.00 0.00 32.89 3.55
101 102 1.001048 CCTCGTCGAACACCAACTGTA 60.001 52.381 0.00 0.00 30.51 2.74
102 103 2.544277 CCTCGTCGAACACCAACTGTAA 60.544 50.000 0.00 0.00 30.51 2.41
103 104 3.314553 CTCGTCGAACACCAACTGTAAT 58.685 45.455 0.00 0.00 30.51 1.89
104 105 4.478699 CTCGTCGAACACCAACTGTAATA 58.521 43.478 0.00 0.00 30.51 0.98
105 106 5.063180 TCGTCGAACACCAACTGTAATAT 57.937 39.130 0.00 0.00 30.51 1.28
106 107 4.860352 TCGTCGAACACCAACTGTAATATG 59.140 41.667 0.00 0.00 30.51 1.78
107 108 4.491924 CGTCGAACACCAACTGTAATATGC 60.492 45.833 0.00 0.00 30.51 3.14
108 109 4.390603 GTCGAACACCAACTGTAATATGCA 59.609 41.667 0.00 0.00 30.51 3.96
109 110 5.064707 GTCGAACACCAACTGTAATATGCAT 59.935 40.000 3.79 3.79 30.51 3.96
110 111 6.256975 GTCGAACACCAACTGTAATATGCATA 59.743 38.462 9.27 9.27 30.51 3.14
111 112 6.256975 TCGAACACCAACTGTAATATGCATAC 59.743 38.462 8.99 0.00 30.51 2.39
112 113 6.036626 CGAACACCAACTGTAATATGCATACA 59.963 38.462 8.99 4.48 30.51 2.29
113 114 6.677781 ACACCAACTGTAATATGCATACAC 57.322 37.500 8.99 10.63 0.00 2.90
114 115 5.588648 ACACCAACTGTAATATGCATACACC 59.411 40.000 8.99 0.00 0.00 4.16
115 116 5.588246 CACCAACTGTAATATGCATACACCA 59.412 40.000 8.99 4.83 0.00 4.17
116 117 6.094742 CACCAACTGTAATATGCATACACCAA 59.905 38.462 8.99 0.00 0.00 3.67
117 118 6.833416 ACCAACTGTAATATGCATACACCAAT 59.167 34.615 8.99 0.00 0.00 3.16
118 119 7.996066 ACCAACTGTAATATGCATACACCAATA 59.004 33.333 8.99 0.00 0.00 1.90
119 120 8.845227 CCAACTGTAATATGCATACACCAATAA 58.155 33.333 8.99 0.00 0.00 1.40
120 121 9.882996 CAACTGTAATATGCATACACCAATAAG 57.117 33.333 8.99 5.93 0.00 1.73
121 122 9.627123 AACTGTAATATGCATACACCAATAAGT 57.373 29.630 8.99 6.50 0.00 2.24
122 123 9.627123 ACTGTAATATGCATACACCAATAAGTT 57.373 29.630 8.99 0.00 0.00 2.66
130 131 7.038659 TGCATACACCAATAAGTTTATTTGGC 58.961 34.615 10.30 0.00 31.28 4.52
131 132 7.093552 TGCATACACCAATAAGTTTATTTGGCT 60.094 33.333 10.30 2.07 31.28 4.75
132 133 8.410141 GCATACACCAATAAGTTTATTTGGCTA 58.590 33.333 10.30 3.65 31.28 3.93
133 134 9.730420 CATACACCAATAAGTTTATTTGGCTAC 57.270 33.333 10.30 0.00 31.28 3.58
134 135 9.695155 ATACACCAATAAGTTTATTTGGCTACT 57.305 29.630 10.30 0.00 31.28 2.57
135 136 8.417273 ACACCAATAAGTTTATTTGGCTACTT 57.583 30.769 10.30 0.00 35.25 2.24
136 137 8.303876 ACACCAATAAGTTTATTTGGCTACTTG 58.696 33.333 10.30 5.48 33.28 3.16
137 138 7.759433 CACCAATAAGTTTATTTGGCTACTTGG 59.241 37.037 10.30 0.00 33.28 3.61
138 139 7.453439 ACCAATAAGTTTATTTGGCTACTTGGT 59.547 33.333 10.30 0.00 34.83 3.67
139 140 8.311109 CCAATAAGTTTATTTGGCTACTTGGTT 58.689 33.333 0.00 0.00 33.28 3.67
150 151 9.705290 ATTTGGCTACTTGGTTATTTTTAAGTG 57.295 29.630 0.00 0.00 35.26 3.16
151 152 7.826918 TGGCTACTTGGTTATTTTTAAGTGT 57.173 32.000 0.00 0.00 35.26 3.55
152 153 8.921353 TGGCTACTTGGTTATTTTTAAGTGTA 57.079 30.769 0.00 0.00 35.26 2.90
153 154 9.523168 TGGCTACTTGGTTATTTTTAAGTGTAT 57.477 29.630 0.00 0.00 35.26 2.29
154 155 9.999009 GGCTACTTGGTTATTTTTAAGTGTATC 57.001 33.333 0.00 0.00 35.26 2.24
178 179 8.578308 TCTCAATTTGTAATTTCTTTGCAGTG 57.422 30.769 0.00 0.00 31.22 3.66
179 180 8.412456 TCTCAATTTGTAATTTCTTTGCAGTGA 58.588 29.630 0.00 0.00 31.22 3.41
180 181 8.939201 TCAATTTGTAATTTCTTTGCAGTGAA 57.061 26.923 0.00 0.20 31.22 3.18
181 182 9.545105 TCAATTTGTAATTTCTTTGCAGTGAAT 57.455 25.926 0.00 0.00 31.22 2.57
197 198 8.925161 TGCAGTGAATTATAAATTGTTTAGGC 57.075 30.769 0.00 0.00 0.00 3.93
198 199 8.526978 TGCAGTGAATTATAAATTGTTTAGGCA 58.473 29.630 0.00 0.00 0.00 4.75
199 200 9.533253 GCAGTGAATTATAAATTGTTTAGGCAT 57.467 29.630 0.00 0.00 0.00 4.40
211 212 9.729281 AAATTGTTTAGGCATGAGAATTTGAAT 57.271 25.926 0.00 0.00 0.00 2.57
212 213 9.729281 AATTGTTTAGGCATGAGAATTTGAATT 57.271 25.926 0.00 0.00 0.00 2.17
213 214 9.729281 ATTGTTTAGGCATGAGAATTTGAATTT 57.271 25.926 0.00 0.00 0.00 1.82
214 215 9.558396 TTGTTTAGGCATGAGAATTTGAATTTT 57.442 25.926 0.00 0.00 0.00 1.82
215 216 9.206870 TGTTTAGGCATGAGAATTTGAATTTTC 57.793 29.630 0.00 1.28 32.01 2.29
216 217 8.659491 GTTTAGGCATGAGAATTTGAATTTTCC 58.341 33.333 0.00 0.00 30.74 3.13
217 218 6.363167 AGGCATGAGAATTTGAATTTTCCA 57.637 33.333 0.00 0.00 30.74 3.53
218 219 6.168389 AGGCATGAGAATTTGAATTTTCCAC 58.832 36.000 0.00 0.00 30.74 4.02
219 220 5.933463 GGCATGAGAATTTGAATTTTCCACA 59.067 36.000 0.00 0.00 30.74 4.17
220 221 6.596497 GGCATGAGAATTTGAATTTTCCACAT 59.404 34.615 0.00 0.00 30.74 3.21
221 222 7.413657 GGCATGAGAATTTGAATTTTCCACATG 60.414 37.037 0.00 14.35 38.57 3.21
222 223 7.332430 GCATGAGAATTTGAATTTTCCACATGA 59.668 33.333 18.73 0.00 38.24 3.07
223 224 9.210329 CATGAGAATTTGAATTTTCCACATGAA 57.790 29.630 0.00 0.00 38.24 2.57
224 225 9.781633 ATGAGAATTTGAATTTTCCACATGAAA 57.218 25.926 0.00 0.00 41.18 2.69
225 226 9.781633 TGAGAATTTGAATTTTCCACATGAAAT 57.218 25.926 0.00 0.00 42.38 2.17
230 231 9.962809 ATTTGAATTTTCCACATGAAATATGGT 57.037 25.926 0.00 0.00 42.38 3.55
231 232 8.774890 TTGAATTTTCCACATGAAATATGGTG 57.225 30.769 0.00 0.00 42.38 4.17
232 233 8.131847 TGAATTTTCCACATGAAATATGGTGA 57.868 30.769 0.00 0.00 42.38 4.02
233 234 8.760735 TGAATTTTCCACATGAAATATGGTGAT 58.239 29.630 0.00 0.00 42.38 3.06
239 240 9.465199 TTCCACATGAAATATGGTGATATATGG 57.535 33.333 0.00 0.00 34.89 2.74
240 241 8.613923 TCCACATGAAATATGGTGATATATGGT 58.386 33.333 0.00 0.00 34.89 3.55
241 242 9.246670 CCACATGAAATATGGTGATATATGGTT 57.753 33.333 0.00 0.00 33.16 3.67
250 251 5.726397 TGGTGATATATGGTTATACACGGC 58.274 41.667 0.00 0.00 30.86 5.68
251 252 5.246429 TGGTGATATATGGTTATACACGGCA 59.754 40.000 0.00 0.00 30.86 5.69
252 253 6.167685 GGTGATATATGGTTATACACGGCAA 58.832 40.000 0.00 0.00 30.86 4.52
253 254 6.651643 GGTGATATATGGTTATACACGGCAAA 59.348 38.462 0.00 0.00 30.86 3.68
254 255 7.173562 GGTGATATATGGTTATACACGGCAAAA 59.826 37.037 0.00 0.00 30.86 2.44
255 256 8.561212 GTGATATATGGTTATACACGGCAAAAA 58.439 33.333 0.00 0.00 0.00 1.94
279 280 8.588290 AAAAAGGCTTTAAGGTTTGGAAAAAT 57.412 26.923 13.77 0.00 0.00 1.82
280 281 8.588290 AAAAGGCTTTAAGGTTTGGAAAAATT 57.412 26.923 13.77 0.00 0.00 1.82
281 282 7.566760 AAGGCTTTAAGGTTTGGAAAAATTG 57.433 32.000 0.00 0.00 0.00 2.32
282 283 5.530915 AGGCTTTAAGGTTTGGAAAAATTGC 59.469 36.000 0.00 0.00 0.00 3.56
283 284 5.278266 GGCTTTAAGGTTTGGAAAAATTGCC 60.278 40.000 0.00 0.00 0.00 4.52
284 285 5.530915 GCTTTAAGGTTTGGAAAAATTGCCT 59.469 36.000 0.00 0.00 0.00 4.75
285 286 6.039270 GCTTTAAGGTTTGGAAAAATTGCCTT 59.961 34.615 0.00 0.00 38.30 4.35
286 287 7.416213 GCTTTAAGGTTTGGAAAAATTGCCTTT 60.416 33.333 0.00 0.00 36.43 3.11
287 288 5.833406 AAGGTTTGGAAAAATTGCCTTTG 57.167 34.783 0.00 0.00 31.59 2.77
288 289 5.109500 AGGTTTGGAAAAATTGCCTTTGA 57.891 34.783 0.00 0.00 0.00 2.69
289 290 5.504853 AGGTTTGGAAAAATTGCCTTTGAA 58.495 33.333 0.00 0.00 0.00 2.69
290 291 5.948758 AGGTTTGGAAAAATTGCCTTTGAAA 59.051 32.000 0.00 0.00 0.00 2.69
291 292 6.606796 AGGTTTGGAAAAATTGCCTTTGAAAT 59.393 30.769 0.00 0.00 0.00 2.17
292 293 7.123997 AGGTTTGGAAAAATTGCCTTTGAAATT 59.876 29.630 0.00 0.00 0.00 1.82
293 294 7.763528 GGTTTGGAAAAATTGCCTTTGAAATTT 59.236 29.630 0.00 0.00 37.54 1.82
294 295 9.149225 GTTTGGAAAAATTGCCTTTGAAATTTT 57.851 25.926 0.00 0.00 44.04 1.82
295 296 8.699283 TTGGAAAAATTGCCTTTGAAATTTTG 57.301 26.923 5.07 0.00 42.33 2.44
296 297 8.059798 TGGAAAAATTGCCTTTGAAATTTTGA 57.940 26.923 5.07 0.00 42.33 2.69
297 298 8.526147 TGGAAAAATTGCCTTTGAAATTTTGAA 58.474 25.926 5.07 0.00 42.33 2.69
298 299 9.531942 GGAAAAATTGCCTTTGAAATTTTGAAT 57.468 25.926 5.07 0.00 42.33 2.57
302 303 9.949174 AAATTGCCTTTGAAATTTTGAATACAC 57.051 25.926 0.00 0.00 33.30 2.90
303 304 8.674263 ATTGCCTTTGAAATTTTGAATACACA 57.326 26.923 0.00 0.00 0.00 3.72
304 305 7.475771 TGCCTTTGAAATTTTGAATACACAC 57.524 32.000 0.00 0.00 0.00 3.82
305 306 7.271511 TGCCTTTGAAATTTTGAATACACACT 58.728 30.769 0.00 0.00 0.00 3.55
306 307 7.437862 TGCCTTTGAAATTTTGAATACACACTC 59.562 33.333 0.00 0.00 0.00 3.51
307 308 7.437862 GCCTTTGAAATTTTGAATACACACTCA 59.562 33.333 0.00 0.00 0.00 3.41
308 309 9.480053 CCTTTGAAATTTTGAATACACACTCAT 57.520 29.630 0.00 0.00 0.00 2.90
315 316 9.643693 AATTTTGAATACACACTCATCAAATCC 57.356 29.630 0.00 0.00 39.10 3.01
316 317 8.408043 TTTTGAATACACACTCATCAAATCCT 57.592 30.769 0.00 0.00 39.10 3.24
317 318 6.990341 TGAATACACACTCATCAAATCCTG 57.010 37.500 0.00 0.00 0.00 3.86
318 319 5.882000 TGAATACACACTCATCAAATCCTGG 59.118 40.000 0.00 0.00 0.00 4.45
319 320 3.077484 ACACACTCATCAAATCCTGGG 57.923 47.619 0.00 0.00 0.00 4.45
320 321 1.747355 CACACTCATCAAATCCTGGGC 59.253 52.381 0.00 0.00 0.00 5.36
321 322 1.341383 ACACTCATCAAATCCTGGGCC 60.341 52.381 0.00 0.00 0.00 5.80
322 323 0.259938 ACTCATCAAATCCTGGGCCC 59.740 55.000 17.59 17.59 0.00 5.80
323 324 0.820891 CTCATCAAATCCTGGGCCCG 60.821 60.000 19.37 12.19 0.00 6.13
324 325 2.123726 ATCAAATCCTGGGCCCGC 60.124 61.111 19.37 0.00 0.00 6.13
325 326 3.738745 ATCAAATCCTGGGCCCGCC 62.739 63.158 19.37 0.00 0.00 6.13
344 345 2.060370 CCTGGCAAAAAGGGCATGT 58.940 52.632 0.00 0.00 42.89 3.21
345 346 0.320946 CCTGGCAAAAAGGGCATGTG 60.321 55.000 0.00 0.00 42.89 3.21
346 347 0.680618 CTGGCAAAAAGGGCATGTGA 59.319 50.000 0.00 0.00 42.89 3.58
347 348 1.276989 CTGGCAAAAAGGGCATGTGAT 59.723 47.619 0.00 0.00 42.89 3.06
348 349 1.698532 TGGCAAAAAGGGCATGTGATT 59.301 42.857 0.00 0.00 38.55 2.57
349 350 2.078392 GGCAAAAAGGGCATGTGATTG 58.922 47.619 0.00 0.00 0.00 2.67
350 351 2.078392 GCAAAAAGGGCATGTGATTGG 58.922 47.619 0.00 0.00 0.00 3.16
351 352 2.702261 CAAAAAGGGCATGTGATTGGG 58.298 47.619 0.00 0.00 0.00 4.12
352 353 2.028561 AAAAGGGCATGTGATTGGGT 57.971 45.000 0.00 0.00 0.00 4.51
353 354 2.028561 AAAGGGCATGTGATTGGGTT 57.971 45.000 0.00 0.00 0.00 4.11
354 355 2.028561 AAGGGCATGTGATTGGGTTT 57.971 45.000 0.00 0.00 0.00 3.27
355 356 1.560505 AGGGCATGTGATTGGGTTTC 58.439 50.000 0.00 0.00 0.00 2.78
356 357 1.077663 AGGGCATGTGATTGGGTTTCT 59.922 47.619 0.00 0.00 0.00 2.52
357 358 1.205417 GGGCATGTGATTGGGTTTCTG 59.795 52.381 0.00 0.00 0.00 3.02
358 359 1.895131 GGCATGTGATTGGGTTTCTGT 59.105 47.619 0.00 0.00 0.00 3.41
359 360 2.353011 GGCATGTGATTGGGTTTCTGTG 60.353 50.000 0.00 0.00 0.00 3.66
360 361 2.927871 GCATGTGATTGGGTTTCTGTGC 60.928 50.000 0.00 0.00 0.00 4.57
361 362 2.363306 TGTGATTGGGTTTCTGTGCT 57.637 45.000 0.00 0.00 0.00 4.40
362 363 1.955778 TGTGATTGGGTTTCTGTGCTG 59.044 47.619 0.00 0.00 0.00 4.41
363 364 1.270550 GTGATTGGGTTTCTGTGCTGG 59.729 52.381 0.00 0.00 0.00 4.85
364 365 1.133513 TGATTGGGTTTCTGTGCTGGT 60.134 47.619 0.00 0.00 0.00 4.00
365 366 1.963515 GATTGGGTTTCTGTGCTGGTT 59.036 47.619 0.00 0.00 0.00 3.67
366 367 1.859302 TTGGGTTTCTGTGCTGGTTT 58.141 45.000 0.00 0.00 0.00 3.27
367 368 1.110442 TGGGTTTCTGTGCTGGTTTG 58.890 50.000 0.00 0.00 0.00 2.93
368 369 0.249447 GGGTTTCTGTGCTGGTTTGC 60.249 55.000 0.00 0.00 0.00 3.68
369 370 0.459489 GGTTTCTGTGCTGGTTTGCA 59.541 50.000 0.00 0.00 41.05 4.08
370 371 1.536709 GGTTTCTGTGCTGGTTTGCAG 60.537 52.381 0.00 0.00 44.20 4.41
371 372 0.102844 TTTCTGTGCTGGTTTGCAGC 59.897 50.000 0.00 0.00 44.20 5.25
377 378 4.347453 CTGGTTTGCAGCGGCCAC 62.347 66.667 6.32 2.88 40.13 5.01
380 381 4.389576 GTTTGCAGCGGCCACGAG 62.390 66.667 6.32 0.00 44.60 4.18
407 408 4.996434 GGCTGCACACGAGGCTGT 62.996 66.667 0.50 0.00 33.29 4.40
408 409 2.974698 GCTGCACACGAGGCTGTT 60.975 61.111 0.00 0.00 33.36 3.16
409 410 2.941333 CTGCACACGAGGCTGTTG 59.059 61.111 0.00 0.00 0.00 3.33
410 411 2.591429 TGCACACGAGGCTGTTGG 60.591 61.111 0.00 0.00 0.00 3.77
411 412 2.591715 GCACACGAGGCTGTTGGT 60.592 61.111 0.00 0.00 0.00 3.67
412 413 2.896801 GCACACGAGGCTGTTGGTG 61.897 63.158 0.00 0.00 36.50 4.17
413 414 2.591715 ACACGAGGCTGTTGGTGC 60.592 61.111 0.00 0.00 33.81 5.01
414 415 2.281070 CACGAGGCTGTTGGTGCT 60.281 61.111 0.00 0.00 0.00 4.40
415 416 2.031163 ACGAGGCTGTTGGTGCTC 59.969 61.111 0.00 0.00 0.00 4.26
416 417 3.114616 CGAGGCTGTTGGTGCTCG 61.115 66.667 0.00 0.00 0.00 5.03
417 418 3.426568 GAGGCTGTTGGTGCTCGC 61.427 66.667 0.00 0.00 0.00 5.03
427 428 4.388499 GTGCTCGCCGGGGAAAGA 62.388 66.667 22.77 6.19 0.00 2.52
428 429 4.082523 TGCTCGCCGGGGAAAGAG 62.083 66.667 22.77 11.69 0.00 2.85
429 430 4.840005 GCTCGCCGGGGAAAGAGG 62.840 72.222 22.77 11.31 0.00 3.69
430 431 3.075005 CTCGCCGGGGAAAGAGGA 61.075 66.667 22.77 0.00 0.00 3.71
431 432 2.365105 TCGCCGGGGAAAGAGGAT 60.365 61.111 20.34 0.00 0.00 3.24
432 433 1.075822 TCGCCGGGGAAAGAGGATA 60.076 57.895 20.34 0.00 0.00 2.59
433 434 1.113517 TCGCCGGGGAAAGAGGATAG 61.114 60.000 20.34 0.00 0.00 2.08
434 435 1.755384 GCCGGGGAAAGAGGATAGG 59.245 63.158 2.18 0.00 0.00 2.57
435 436 0.763223 GCCGGGGAAAGAGGATAGGA 60.763 60.000 2.18 0.00 0.00 2.94
436 437 1.343069 CCGGGGAAAGAGGATAGGAG 58.657 60.000 0.00 0.00 0.00 3.69
437 438 1.343069 CGGGGAAAGAGGATAGGAGG 58.657 60.000 0.00 0.00 0.00 4.30
438 439 1.413227 CGGGGAAAGAGGATAGGAGGT 60.413 57.143 0.00 0.00 0.00 3.85
439 440 2.050918 GGGGAAAGAGGATAGGAGGTG 58.949 57.143 0.00 0.00 0.00 4.00
440 441 2.050918 GGGAAAGAGGATAGGAGGTGG 58.949 57.143 0.00 0.00 0.00 4.61
441 442 2.629909 GGGAAAGAGGATAGGAGGTGGT 60.630 54.545 0.00 0.00 0.00 4.16
442 443 2.701423 GGAAAGAGGATAGGAGGTGGTC 59.299 54.545 0.00 0.00 0.00 4.02
443 444 2.074729 AAGAGGATAGGAGGTGGTCG 57.925 55.000 0.00 0.00 0.00 4.79
444 445 0.186386 AGAGGATAGGAGGTGGTCGG 59.814 60.000 0.00 0.00 0.00 4.79
445 446 0.106116 GAGGATAGGAGGTGGTCGGT 60.106 60.000 0.00 0.00 0.00 4.69
446 447 0.338814 AGGATAGGAGGTGGTCGGTT 59.661 55.000 0.00 0.00 0.00 4.44
447 448 0.464452 GGATAGGAGGTGGTCGGTTG 59.536 60.000 0.00 0.00 0.00 3.77
448 449 1.481871 GATAGGAGGTGGTCGGTTGA 58.518 55.000 0.00 0.00 0.00 3.18
449 450 1.409427 GATAGGAGGTGGTCGGTTGAG 59.591 57.143 0.00 0.00 0.00 3.02
450 451 0.613853 TAGGAGGTGGTCGGTTGAGG 60.614 60.000 0.00 0.00 0.00 3.86
451 452 2.214920 GGAGGTGGTCGGTTGAGGT 61.215 63.158 0.00 0.00 0.00 3.85
452 453 1.004918 GAGGTGGTCGGTTGAGGTG 60.005 63.158 0.00 0.00 0.00 4.00
453 454 2.032071 GGTGGTCGGTTGAGGTGG 59.968 66.667 0.00 0.00 0.00 4.61
454 455 2.513259 GGTGGTCGGTTGAGGTGGA 61.513 63.158 0.00 0.00 0.00 4.02
455 456 1.448497 GTGGTCGGTTGAGGTGGAA 59.552 57.895 0.00 0.00 0.00 3.53
456 457 0.602905 GTGGTCGGTTGAGGTGGAAG 60.603 60.000 0.00 0.00 0.00 3.46
457 458 1.003718 GGTCGGTTGAGGTGGAAGG 60.004 63.158 0.00 0.00 0.00 3.46
458 459 1.477685 GGTCGGTTGAGGTGGAAGGA 61.478 60.000 0.00 0.00 0.00 3.36
459 460 0.395312 GTCGGTTGAGGTGGAAGGAA 59.605 55.000 0.00 0.00 0.00 3.36
460 461 0.685097 TCGGTTGAGGTGGAAGGAAG 59.315 55.000 0.00 0.00 0.00 3.46
461 462 0.685097 CGGTTGAGGTGGAAGGAAGA 59.315 55.000 0.00 0.00 0.00 2.87
462 463 1.071699 CGGTTGAGGTGGAAGGAAGAA 59.928 52.381 0.00 0.00 0.00 2.52
463 464 2.784347 GGTTGAGGTGGAAGGAAGAAG 58.216 52.381 0.00 0.00 0.00 2.85
464 465 2.372172 GGTTGAGGTGGAAGGAAGAAGA 59.628 50.000 0.00 0.00 0.00 2.87
465 466 3.009584 GGTTGAGGTGGAAGGAAGAAGAT 59.990 47.826 0.00 0.00 0.00 2.40
466 467 4.225267 GGTTGAGGTGGAAGGAAGAAGATA 59.775 45.833 0.00 0.00 0.00 1.98
467 468 5.280521 GGTTGAGGTGGAAGGAAGAAGATAA 60.281 44.000 0.00 0.00 0.00 1.75
468 469 5.683876 TGAGGTGGAAGGAAGAAGATAAG 57.316 43.478 0.00 0.00 0.00 1.73
469 470 5.342017 TGAGGTGGAAGGAAGAAGATAAGA 58.658 41.667 0.00 0.00 0.00 2.10
470 471 5.187967 TGAGGTGGAAGGAAGAAGATAAGAC 59.812 44.000 0.00 0.00 0.00 3.01
471 472 5.094387 AGGTGGAAGGAAGAAGATAAGACA 58.906 41.667 0.00 0.00 0.00 3.41
472 473 5.548056 AGGTGGAAGGAAGAAGATAAGACAA 59.452 40.000 0.00 0.00 0.00 3.18
473 474 6.044404 AGGTGGAAGGAAGAAGATAAGACAAA 59.956 38.462 0.00 0.00 0.00 2.83
474 475 6.372937 GGTGGAAGGAAGAAGATAAGACAAAG 59.627 42.308 0.00 0.00 0.00 2.77
475 476 7.162082 GTGGAAGGAAGAAGATAAGACAAAGA 58.838 38.462 0.00 0.00 0.00 2.52
476 477 7.661847 GTGGAAGGAAGAAGATAAGACAAAGAA 59.338 37.037 0.00 0.00 0.00 2.52
477 478 8.217799 TGGAAGGAAGAAGATAAGACAAAGAAA 58.782 33.333 0.00 0.00 0.00 2.52
478 479 9.067986 GGAAGGAAGAAGATAAGACAAAGAAAA 57.932 33.333 0.00 0.00 0.00 2.29
498 499 1.834188 AAAAACATAGGAGGCGTGGG 58.166 50.000 0.00 0.00 0.00 4.61
499 500 0.988832 AAAACATAGGAGGCGTGGGA 59.011 50.000 0.00 0.00 0.00 4.37
500 501 1.213296 AAACATAGGAGGCGTGGGAT 58.787 50.000 0.00 0.00 0.00 3.85
501 502 2.097110 AACATAGGAGGCGTGGGATA 57.903 50.000 0.00 0.00 0.00 2.59
502 503 1.633774 ACATAGGAGGCGTGGGATAG 58.366 55.000 0.00 0.00 0.00 2.08
503 504 1.147191 ACATAGGAGGCGTGGGATAGA 59.853 52.381 0.00 0.00 0.00 1.98
504 505 1.546476 CATAGGAGGCGTGGGATAGAC 59.454 57.143 0.00 0.00 0.00 2.59
505 506 0.536687 TAGGAGGCGTGGGATAGACG 60.537 60.000 0.00 0.00 39.87 4.18
513 514 2.038690 TGGGATAGACGCACGATCC 58.961 57.895 11.75 11.75 45.76 3.36
514 515 4.968197 GGATAGACGCACGATCCC 57.032 61.111 9.88 0.00 42.41 3.85
515 516 2.342478 GGATAGACGCACGATCCCT 58.658 57.895 9.88 0.00 42.41 4.20
516 517 1.531423 GGATAGACGCACGATCCCTA 58.469 55.000 9.88 0.00 42.41 3.53
517 518 2.093106 GGATAGACGCACGATCCCTAT 58.907 52.381 9.88 0.00 42.41 2.57
518 519 3.276857 GGATAGACGCACGATCCCTATA 58.723 50.000 9.88 0.00 42.41 1.31
519 520 3.312973 GGATAGACGCACGATCCCTATAG 59.687 52.174 9.88 0.00 42.41 1.31
520 521 1.535833 AGACGCACGATCCCTATAGG 58.464 55.000 12.27 12.27 0.00 2.57
521 522 1.202903 AGACGCACGATCCCTATAGGT 60.203 52.381 17.72 0.00 36.75 3.08
522 523 1.612463 GACGCACGATCCCTATAGGTT 59.388 52.381 17.72 4.62 36.75 3.50
523 524 1.340248 ACGCACGATCCCTATAGGTTG 59.660 52.381 17.72 6.56 36.75 3.77
524 525 1.611977 CGCACGATCCCTATAGGTTGA 59.388 52.381 17.72 8.97 36.75 3.18
525 526 2.231478 CGCACGATCCCTATAGGTTGAT 59.769 50.000 17.72 13.30 36.75 2.57
526 527 3.673594 CGCACGATCCCTATAGGTTGATC 60.674 52.174 20.28 20.28 36.75 2.92
530 531 4.379339 GATCCCTATAGGTTGATCGAGC 57.621 50.000 17.72 3.80 36.75 5.03
531 532 2.160205 TCCCTATAGGTTGATCGAGCG 58.840 52.381 17.72 0.00 36.75 5.03
532 533 1.402984 CCCTATAGGTTGATCGAGCGC 60.403 57.143 17.72 0.00 0.00 5.92
533 534 1.269723 CCTATAGGTTGATCGAGCGCA 59.730 52.381 11.47 0.00 0.00 6.09
534 535 2.320367 CTATAGGTTGATCGAGCGCAC 58.680 52.381 11.47 0.96 0.00 5.34
535 536 0.459899 ATAGGTTGATCGAGCGCACA 59.540 50.000 11.47 0.00 0.00 4.57
536 537 0.459899 TAGGTTGATCGAGCGCACAT 59.540 50.000 11.47 0.00 0.00 3.21
537 538 1.086067 AGGTTGATCGAGCGCACATG 61.086 55.000 11.47 0.00 0.00 3.21
538 539 1.083806 GGTTGATCGAGCGCACATGA 61.084 55.000 11.47 1.07 0.00 3.07
539 540 0.025513 GTTGATCGAGCGCACATGAC 59.974 55.000 11.47 0.00 0.00 3.06
540 541 1.413008 TTGATCGAGCGCACATGACG 61.413 55.000 11.47 3.87 0.00 4.35
541 542 1.874019 GATCGAGCGCACATGACGT 60.874 57.895 11.47 0.00 0.00 4.34
550 551 2.048222 ACATGACGTGACCAGCCG 60.048 61.111 0.00 0.00 0.00 5.52
551 552 2.261361 CATGACGTGACCAGCCGA 59.739 61.111 0.00 0.00 0.00 5.54
552 553 1.374125 CATGACGTGACCAGCCGAA 60.374 57.895 0.00 0.00 0.00 4.30
553 554 0.740868 CATGACGTGACCAGCCGAAT 60.741 55.000 0.00 0.00 0.00 3.34
554 555 0.460284 ATGACGTGACCAGCCGAATC 60.460 55.000 0.00 0.00 0.00 2.52
555 556 2.126071 ACGTGACCAGCCGAATCG 60.126 61.111 0.00 0.00 0.00 3.34
556 557 2.126071 CGTGACCAGCCGAATCGT 60.126 61.111 0.82 0.00 0.00 3.73
557 558 1.736645 CGTGACCAGCCGAATCGTT 60.737 57.895 0.82 0.00 0.00 3.85
558 559 1.683790 CGTGACCAGCCGAATCGTTC 61.684 60.000 0.82 0.00 0.00 3.95
567 568 3.861263 GAATCGTTCGGCCGGCAC 61.861 66.667 30.85 20.97 0.00 5.01
580 581 3.608041 GGCACGCCGTTTTGAAAC 58.392 55.556 0.00 0.00 35.59 2.78
609 610 6.489603 TCCTAAAAATATTTGCCTGGACTGA 58.510 36.000 0.39 0.00 0.00 3.41
620 621 2.622942 GCCTGGACTGAATTGTTTGACA 59.377 45.455 0.00 0.00 0.00 3.58
621 622 3.068024 GCCTGGACTGAATTGTTTGACAA 59.932 43.478 0.00 0.00 42.95 3.18
646 647 0.677731 AATGGTCACGCATCAGTGGG 60.678 55.000 0.00 0.00 42.10 4.61
697 703 0.679505 TGACGCTCTAGTTTGGCAGT 59.320 50.000 0.00 0.00 0.00 4.40
706 712 5.278463 GCTCTAGTTTGGCAGTTCATTCAAA 60.278 40.000 0.00 0.00 0.00 2.69
728 734 1.738099 GCAGCCTGGTGACGTACTG 60.738 63.158 0.00 0.00 0.00 2.74
737 743 1.799916 TGACGTACTGCATGACGCG 60.800 57.895 17.62 3.53 46.97 6.01
740 746 2.697425 GTACTGCATGACGCGCTG 59.303 61.111 5.73 2.21 46.97 5.18
741 747 3.188100 TACTGCATGACGCGCTGC 61.188 61.111 18.59 18.59 46.97 5.25
742 748 3.930772 TACTGCATGACGCGCTGCA 62.931 57.895 24.16 24.16 46.97 4.41
743 749 4.806481 CTGCATGACGCGCTGCAC 62.806 66.667 22.64 4.96 46.97 4.57
752 758 3.499737 GCGCTGCACGGCACTATT 61.500 61.111 0.00 0.00 43.93 1.73
753 759 3.039202 GCGCTGCACGGCACTATTT 62.039 57.895 0.00 0.00 43.93 1.40
754 760 1.501741 CGCTGCACGGCACTATTTT 59.498 52.632 0.00 0.00 38.44 1.82
755 761 0.109781 CGCTGCACGGCACTATTTTT 60.110 50.000 0.00 0.00 38.44 1.94
830 836 4.615513 AGCTCCAGACCTACTTACTCATT 58.384 43.478 0.00 0.00 0.00 2.57
862 868 1.594021 TTCATCACACACGCAGCGT 60.594 52.632 16.61 16.61 42.36 5.07
897 903 2.743928 CTGCTGCTCCGGTGGTTC 60.744 66.667 0.00 0.00 0.00 3.62
1101 1109 2.609737 CGAACTCTTACTCGGCAAGGTT 60.610 50.000 0.00 0.00 0.00 3.50
1143 1185 0.106268 TGTTCCTTGGCTCCTTGCAA 60.106 50.000 0.00 0.00 45.15 4.08
1161 1203 3.808728 GCAAGGAGTAGTTGCCATATCA 58.191 45.455 0.00 0.00 43.80 2.15
1162 1204 4.392940 GCAAGGAGTAGTTGCCATATCAT 58.607 43.478 0.00 0.00 43.80 2.45
1163 1205 4.823989 GCAAGGAGTAGTTGCCATATCATT 59.176 41.667 0.00 0.00 43.80 2.57
1164 1206 5.049129 GCAAGGAGTAGTTGCCATATCATTC 60.049 44.000 0.00 0.00 43.80 2.67
1165 1207 4.887748 AGGAGTAGTTGCCATATCATTCG 58.112 43.478 0.00 0.00 0.00 3.34
1166 1208 3.433615 GGAGTAGTTGCCATATCATTCGC 59.566 47.826 0.00 0.00 0.00 4.70
1167 1209 4.058124 GAGTAGTTGCCATATCATTCGCA 58.942 43.478 0.00 0.00 0.00 5.10
1168 1210 3.809832 AGTAGTTGCCATATCATTCGCAC 59.190 43.478 0.00 0.00 0.00 5.34
1169 1211 1.599071 AGTTGCCATATCATTCGCACG 59.401 47.619 0.00 0.00 0.00 5.34
1170 1212 0.307453 TTGCCATATCATTCGCACGC 59.693 50.000 0.00 0.00 0.00 5.34
1171 1213 1.154599 GCCATATCATTCGCACGCG 60.155 57.895 3.53 3.53 41.35 6.01
1188 1230 1.687494 GCGAATGTCAGTCTGACCGC 61.687 60.000 27.59 27.59 46.40 5.68
1208 1252 2.893637 CCCAGAGTTCTCCGTGTAATG 58.106 52.381 0.00 0.00 0.00 1.90
1380 1744 0.747255 CTACTACCAGCACCGCATCT 59.253 55.000 0.00 0.00 0.00 2.90
1430 1919 4.269844 GTCAGTACCTACTACGTAGCACTC 59.730 50.000 22.40 8.43 35.06 3.51
1464 1962 7.335627 TCGTTTCATTTATACAGATTGAGGGT 58.664 34.615 0.00 0.00 0.00 4.34
1477 1975 5.590259 CAGATTGAGGGTTTGTAGGTATTGG 59.410 44.000 0.00 0.00 0.00 3.16
1481 1979 2.097036 GGGTTTGTAGGTATTGGCCAC 58.903 52.381 3.88 0.00 0.00 5.01
1487 1985 2.691526 TGTAGGTATTGGCCACTCTACG 59.308 50.000 3.88 0.00 32.28 3.51
1489 1987 1.755380 AGGTATTGGCCACTCTACGTC 59.245 52.381 3.88 0.00 0.00 4.34
1559 2064 5.240844 CCAAGAAGGAAAGGTGAAATACGTT 59.759 40.000 0.00 0.00 41.22 3.99
1571 2076 2.547299 AATACGTTGGGTTGTCGGAA 57.453 45.000 0.00 0.00 0.00 4.30
1577 2082 2.046217 GGGTTGTCGGAAGCCTCC 60.046 66.667 8.55 0.00 38.52 4.30
1604 2109 1.271379 ACAATAAGAAGGGCACACGCT 60.271 47.619 0.00 0.00 41.64 5.07
1800 2441 4.465305 AGCCCTAGTACAACTTTGTCGTAT 59.535 41.667 0.00 0.00 42.35 3.06
1853 2496 9.087424 AGAAAGAACTTACAAATTGTTTTCTGC 57.913 29.630 15.98 11.72 29.16 4.26
1890 2533 3.404224 TTGGAATTGTGGCGTACAGTA 57.596 42.857 0.00 0.00 41.10 2.74
1932 2575 4.122337 TCCACTGGACCTAAACTAGTGA 57.878 45.455 11.73 0.00 45.26 3.41
1936 2579 5.280011 CCACTGGACCTAAACTAGTGAACAT 60.280 44.000 11.73 0.00 45.26 2.71
1937 2580 5.639506 CACTGGACCTAAACTAGTGAACATG 59.360 44.000 0.00 0.00 45.26 3.21
1942 2585 6.309737 GGACCTAAACTAGTGAACATGTTACG 59.690 42.308 11.95 1.12 0.00 3.18
1943 2586 6.161381 ACCTAAACTAGTGAACATGTTACGG 58.839 40.000 11.95 10.48 0.00 4.02
2024 2688 6.764085 GCTATCTTACTTTTCTCCTTTCTCCC 59.236 42.308 0.00 0.00 0.00 4.30
2046 2710 5.279910 CCCTTTTCTAACAAATGCATCCCAA 60.280 40.000 0.00 0.00 0.00 4.12
2159 2823 3.454587 TTGCACGTCGTCCCAGCTT 62.455 57.895 0.00 0.00 0.00 3.74
2378 3051 2.287427 TCCGAGACCCCTCCCCTA 60.287 66.667 0.00 0.00 36.04 3.53
2384 3057 1.435168 GAGACCCCTCCCCTATCATCT 59.565 57.143 0.00 0.00 33.30 2.90
2411 3084 8.282982 TGGAAAGCCACTTAATTGGGTATTATA 58.717 33.333 15.97 1.55 46.96 0.98
2447 3120 1.260033 GCTGATGCTTCGTATCACTGC 59.740 52.381 0.00 0.00 31.86 4.40
2516 3189 2.954318 GATGGAATCATGGAACCACCAG 59.046 50.000 7.56 0.00 42.73 4.00
2519 3192 6.564523 GATGGAATCATGGAACCACCAGTTT 61.565 44.000 7.56 0.00 42.73 2.66
2560 3233 0.883833 CTGCCCATGAGTGTTGAACC 59.116 55.000 0.00 0.00 0.00 3.62
2574 3247 7.885922 TGAGTGTTGAACCTTTTATTATGCCTA 59.114 33.333 0.00 0.00 0.00 3.93
2623 3296 5.083821 ACTTTTTGGCAAGGCTATAAAGGA 58.916 37.500 18.71 0.00 40.27 3.36
2643 3317 5.205056 AGGACCTTTTGTAACACATTTCCA 58.795 37.500 0.00 0.00 0.00 3.53
2685 3360 4.371624 TCCAACCTCATGTGAAGATTGT 57.628 40.909 0.00 0.00 0.00 2.71
2697 3372 1.659098 GAAGATTGTGGTAAGCGTCGG 59.341 52.381 0.00 0.00 0.00 4.79
2748 6648 1.094785 GTTGCACCTTCGGCATACAT 58.905 50.000 0.00 0.00 41.58 2.29
2886 6786 2.419436 GGAAGCCTCTAGAGTCCTTTGC 60.419 54.545 18.42 12.79 0.00 3.68
2932 6832 4.820897 GTCACTGTGGATTGTGATGACTA 58.179 43.478 8.11 0.00 43.75 2.59
3106 7006 3.355077 TGGCGACAACCCATGATTT 57.645 47.368 0.00 0.00 37.44 2.17
3149 7049 3.740115 GAGTACCCAGTTTTGAGCTTCA 58.260 45.455 0.00 0.00 0.00 3.02
3206 7106 6.598525 TGTACATGACAATGACGATGTTTTC 58.401 36.000 0.00 0.00 37.24 2.29
3263 7164 0.034896 TCAGACTGGTTCTTTCGGGC 59.965 55.000 1.81 0.00 28.96 6.13
3276 7177 3.682858 TCTTTCGGGCAAAAATCTAGACG 59.317 43.478 0.00 0.00 0.00 4.18
3342 7243 2.280797 TCGCTGTCCTTGTGGTGC 60.281 61.111 0.00 0.00 34.23 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.273318 GCTCCTTCCATCTAACAACCAAT 58.727 43.478 0.00 0.00 0.00 3.16
1 2 3.686016 GCTCCTTCCATCTAACAACCAA 58.314 45.455 0.00 0.00 0.00 3.67
2 3 2.354704 CGCTCCTTCCATCTAACAACCA 60.355 50.000 0.00 0.00 0.00 3.67
3 4 2.280628 CGCTCCTTCCATCTAACAACC 58.719 52.381 0.00 0.00 0.00 3.77
4 5 2.673368 CACGCTCCTTCCATCTAACAAC 59.327 50.000 0.00 0.00 0.00 3.32
5 6 2.301870 ACACGCTCCTTCCATCTAACAA 59.698 45.455 0.00 0.00 0.00 2.83
6 7 1.899814 ACACGCTCCTTCCATCTAACA 59.100 47.619 0.00 0.00 0.00 2.41
7 8 2.674796 ACACGCTCCTTCCATCTAAC 57.325 50.000 0.00 0.00 0.00 2.34
8 9 4.811969 TTTACACGCTCCTTCCATCTAA 57.188 40.909 0.00 0.00 0.00 2.10
9 10 4.755411 CTTTTACACGCTCCTTCCATCTA 58.245 43.478 0.00 0.00 0.00 1.98
10 11 3.600388 CTTTTACACGCTCCTTCCATCT 58.400 45.455 0.00 0.00 0.00 2.90
11 12 2.096013 GCTTTTACACGCTCCTTCCATC 59.904 50.000 0.00 0.00 0.00 3.51
12 13 2.084546 GCTTTTACACGCTCCTTCCAT 58.915 47.619 0.00 0.00 0.00 3.41
13 14 1.519408 GCTTTTACACGCTCCTTCCA 58.481 50.000 0.00 0.00 0.00 3.53
14 15 0.442699 CGCTTTTACACGCTCCTTCC 59.557 55.000 0.00 0.00 0.00 3.46
15 16 1.136336 CACGCTTTTACACGCTCCTTC 60.136 52.381 0.00 0.00 0.00 3.46
16 17 0.865769 CACGCTTTTACACGCTCCTT 59.134 50.000 0.00 0.00 0.00 3.36
17 18 0.249741 ACACGCTTTTACACGCTCCT 60.250 50.000 0.00 0.00 0.00 3.69
18 19 1.421382 TACACGCTTTTACACGCTCC 58.579 50.000 0.00 0.00 0.00 4.70
19 20 3.508648 TTTACACGCTTTTACACGCTC 57.491 42.857 0.00 0.00 0.00 5.03
20 21 3.744426 AGATTTACACGCTTTTACACGCT 59.256 39.130 0.00 0.00 0.00 5.07
21 22 4.061570 AGATTTACACGCTTTTACACGC 57.938 40.909 0.00 0.00 0.00 5.34
22 23 5.905181 ACAAAGATTTACACGCTTTTACACG 59.095 36.000 0.00 0.00 30.00 4.49
23 24 8.837059 CATACAAAGATTTACACGCTTTTACAC 58.163 33.333 0.00 0.00 30.00 2.90
24 25 8.561212 ACATACAAAGATTTACACGCTTTTACA 58.439 29.630 0.00 0.00 30.00 2.41
25 26 8.944212 ACATACAAAGATTTACACGCTTTTAC 57.056 30.769 0.00 0.00 30.00 2.01
26 27 8.995220 AGACATACAAAGATTTACACGCTTTTA 58.005 29.630 0.00 0.00 30.00 1.52
27 28 7.871853 AGACATACAAAGATTTACACGCTTTT 58.128 30.769 0.00 0.00 30.00 2.27
28 29 7.435068 AGACATACAAAGATTTACACGCTTT 57.565 32.000 0.00 0.00 32.46 3.51
29 30 7.201530 GCTAGACATACAAAGATTTACACGCTT 60.202 37.037 0.00 0.00 0.00 4.68
30 31 6.255887 GCTAGACATACAAAGATTTACACGCT 59.744 38.462 0.00 0.00 0.00 5.07
31 32 6.035650 TGCTAGACATACAAAGATTTACACGC 59.964 38.462 0.00 0.00 0.00 5.34
32 33 7.520119 TGCTAGACATACAAAGATTTACACG 57.480 36.000 0.00 0.00 0.00 4.49
41 42 9.941664 CCTATCAAAAATGCTAGACATACAAAG 57.058 33.333 0.00 0.00 38.34 2.77
42 43 8.405531 GCCTATCAAAAATGCTAGACATACAAA 58.594 33.333 0.00 0.00 38.34 2.83
43 44 7.013274 GGCCTATCAAAAATGCTAGACATACAA 59.987 37.037 0.00 0.00 38.34 2.41
44 45 6.486657 GGCCTATCAAAAATGCTAGACATACA 59.513 38.462 0.00 0.00 38.34 2.29
45 46 6.347725 CGGCCTATCAAAAATGCTAGACATAC 60.348 42.308 0.00 0.00 38.34 2.39
46 47 5.700832 CGGCCTATCAAAAATGCTAGACATA 59.299 40.000 0.00 0.00 38.34 2.29
47 48 4.516698 CGGCCTATCAAAAATGCTAGACAT 59.483 41.667 0.00 0.00 42.30 3.06
48 49 3.876914 CGGCCTATCAAAAATGCTAGACA 59.123 43.478 0.00 0.00 0.00 3.41
49 50 3.251004 CCGGCCTATCAAAAATGCTAGAC 59.749 47.826 0.00 0.00 0.00 2.59
50 51 3.476552 CCGGCCTATCAAAAATGCTAGA 58.523 45.455 0.00 0.00 0.00 2.43
51 52 2.030805 GCCGGCCTATCAAAAATGCTAG 60.031 50.000 18.11 0.00 0.00 3.42
52 53 1.953686 GCCGGCCTATCAAAAATGCTA 59.046 47.619 18.11 0.00 0.00 3.49
53 54 0.746659 GCCGGCCTATCAAAAATGCT 59.253 50.000 18.11 0.00 0.00 3.79
54 55 0.746659 AGCCGGCCTATCAAAAATGC 59.253 50.000 26.15 0.00 0.00 3.56
55 56 1.750778 ACAGCCGGCCTATCAAAAATG 59.249 47.619 26.15 13.41 0.00 2.32
56 57 1.750778 CACAGCCGGCCTATCAAAAAT 59.249 47.619 26.15 0.00 0.00 1.82
57 58 1.173043 CACAGCCGGCCTATCAAAAA 58.827 50.000 26.15 0.00 0.00 1.94
58 59 1.312371 GCACAGCCGGCCTATCAAAA 61.312 55.000 26.15 0.00 0.00 2.44
59 60 1.748879 GCACAGCCGGCCTATCAAA 60.749 57.895 26.15 0.00 0.00 2.69
60 61 2.124736 GCACAGCCGGCCTATCAA 60.125 61.111 26.15 0.00 0.00 2.57
61 62 4.529219 CGCACAGCCGGCCTATCA 62.529 66.667 26.15 0.00 0.00 2.15
62 63 4.221422 TCGCACAGCCGGCCTATC 62.221 66.667 26.15 9.69 0.00 2.08
63 64 4.227134 CTCGCACAGCCGGCCTAT 62.227 66.667 26.15 5.69 0.00 2.57
72 73 3.610791 TTCGACGAGGCTCGCACAG 62.611 63.158 34.76 22.59 45.12 3.66
73 74 3.666253 TTCGACGAGGCTCGCACA 61.666 61.111 34.76 16.79 45.12 4.57
74 75 3.173240 GTTCGACGAGGCTCGCAC 61.173 66.667 34.76 26.26 45.12 5.34
75 76 3.666253 TGTTCGACGAGGCTCGCA 61.666 61.111 34.76 21.67 45.12 5.10
76 77 3.173240 GTGTTCGACGAGGCTCGC 61.173 66.667 34.76 25.13 45.12 5.03
77 78 2.504244 GGTGTTCGACGAGGCTCG 60.504 66.667 33.42 33.42 46.93 5.03
78 79 1.006571 TTGGTGTTCGACGAGGCTC 60.007 57.895 3.87 3.87 0.00 4.70
79 80 1.300697 GTTGGTGTTCGACGAGGCT 60.301 57.895 0.00 0.00 0.00 4.58
80 81 1.300697 AGTTGGTGTTCGACGAGGC 60.301 57.895 0.00 0.00 34.93 4.70
81 82 0.249322 ACAGTTGGTGTTCGACGAGG 60.249 55.000 0.00 0.00 34.94 4.63
82 83 2.410785 TACAGTTGGTGTTCGACGAG 57.589 50.000 0.00 0.00 40.94 4.18
83 84 2.867287 TTACAGTTGGTGTTCGACGA 57.133 45.000 0.00 0.00 40.94 4.20
84 85 4.491924 GCATATTACAGTTGGTGTTCGACG 60.492 45.833 0.00 0.00 40.94 5.12
85 86 4.390603 TGCATATTACAGTTGGTGTTCGAC 59.609 41.667 0.00 0.00 40.94 4.20
86 87 4.570930 TGCATATTACAGTTGGTGTTCGA 58.429 39.130 0.00 0.00 40.94 3.71
87 88 4.937696 TGCATATTACAGTTGGTGTTCG 57.062 40.909 0.00 0.00 40.94 3.95
88 89 7.186804 GTGTATGCATATTACAGTTGGTGTTC 58.813 38.462 10.16 0.00 40.94 3.18
89 90 6.094881 GGTGTATGCATATTACAGTTGGTGTT 59.905 38.462 10.16 0.00 40.94 3.32
90 91 5.588648 GGTGTATGCATATTACAGTTGGTGT 59.411 40.000 10.16 0.00 43.86 4.16
91 92 5.588246 TGGTGTATGCATATTACAGTTGGTG 59.412 40.000 10.16 0.00 0.00 4.17
92 93 5.750524 TGGTGTATGCATATTACAGTTGGT 58.249 37.500 10.16 0.00 0.00 3.67
93 94 6.691754 TTGGTGTATGCATATTACAGTTGG 57.308 37.500 10.16 0.00 0.00 3.77
94 95 9.882996 CTTATTGGTGTATGCATATTACAGTTG 57.117 33.333 10.16 0.75 0.00 3.16
95 96 9.627123 ACTTATTGGTGTATGCATATTACAGTT 57.373 29.630 10.16 4.15 0.00 3.16
96 97 9.627123 AACTTATTGGTGTATGCATATTACAGT 57.373 29.630 10.16 8.37 0.00 3.55
104 105 7.710475 GCCAAATAAACTTATTGGTGTATGCAT 59.290 33.333 3.79 3.79 33.85 3.96
105 106 7.038659 GCCAAATAAACTTATTGGTGTATGCA 58.961 34.615 5.74 0.00 33.85 3.96
106 107 7.264947 AGCCAAATAAACTTATTGGTGTATGC 58.735 34.615 5.74 0.00 33.85 3.14
107 108 9.730420 GTAGCCAAATAAACTTATTGGTGTATG 57.270 33.333 5.74 0.00 33.85 2.39
108 109 9.695155 AGTAGCCAAATAAACTTATTGGTGTAT 57.305 29.630 5.74 0.00 33.85 2.29
109 110 9.523168 AAGTAGCCAAATAAACTTATTGGTGTA 57.477 29.630 5.74 0.00 33.85 2.90
110 111 8.303876 CAAGTAGCCAAATAAACTTATTGGTGT 58.696 33.333 5.74 0.00 33.85 4.16
111 112 7.759433 CCAAGTAGCCAAATAAACTTATTGGTG 59.241 37.037 5.74 0.00 33.85 4.17
112 113 7.453439 ACCAAGTAGCCAAATAAACTTATTGGT 59.547 33.333 5.74 0.00 36.75 3.67
113 114 7.836842 ACCAAGTAGCCAAATAAACTTATTGG 58.163 34.615 0.00 0.00 35.52 3.16
124 125 9.705290 CACTTAAAAATAACCAAGTAGCCAAAT 57.295 29.630 0.00 0.00 30.31 2.32
125 126 8.697292 ACACTTAAAAATAACCAAGTAGCCAAA 58.303 29.630 0.00 0.00 30.31 3.28
126 127 8.240267 ACACTTAAAAATAACCAAGTAGCCAA 57.760 30.769 0.00 0.00 30.31 4.52
127 128 7.826918 ACACTTAAAAATAACCAAGTAGCCA 57.173 32.000 0.00 0.00 30.31 4.75
128 129 9.999009 GATACACTTAAAAATAACCAAGTAGCC 57.001 33.333 0.00 0.00 30.31 3.93
152 153 9.199982 CACTGCAAAGAAATTACAAATTGAGAT 57.800 29.630 0.00 0.00 0.00 2.75
153 154 8.412456 TCACTGCAAAGAAATTACAAATTGAGA 58.588 29.630 0.00 0.00 0.00 3.27
154 155 8.578308 TCACTGCAAAGAAATTACAAATTGAG 57.422 30.769 0.00 0.00 0.00 3.02
155 156 8.939201 TTCACTGCAAAGAAATTACAAATTGA 57.061 26.923 0.00 0.00 0.00 2.57
171 172 9.364989 GCCTAAACAATTTATAATTCACTGCAA 57.635 29.630 0.00 0.00 0.00 4.08
172 173 8.526978 TGCCTAAACAATTTATAATTCACTGCA 58.473 29.630 0.00 0.00 0.00 4.41
173 174 8.925161 TGCCTAAACAATTTATAATTCACTGC 57.075 30.769 0.00 0.00 0.00 4.40
185 186 9.729281 ATTCAAATTCTCATGCCTAAACAATTT 57.271 25.926 0.00 0.00 0.00 1.82
186 187 9.729281 AATTCAAATTCTCATGCCTAAACAATT 57.271 25.926 0.00 0.00 0.00 2.32
187 188 9.729281 AAATTCAAATTCTCATGCCTAAACAAT 57.271 25.926 0.00 0.00 0.00 2.71
188 189 9.558396 AAAATTCAAATTCTCATGCCTAAACAA 57.442 25.926 0.00 0.00 0.00 2.83
189 190 9.206870 GAAAATTCAAATTCTCATGCCTAAACA 57.793 29.630 0.00 0.00 0.00 2.83
190 191 8.659491 GGAAAATTCAAATTCTCATGCCTAAAC 58.341 33.333 0.00 0.00 0.00 2.01
191 192 8.373981 TGGAAAATTCAAATTCTCATGCCTAAA 58.626 29.630 0.00 0.00 0.00 1.85
192 193 7.818930 GTGGAAAATTCAAATTCTCATGCCTAA 59.181 33.333 0.00 0.00 0.00 2.69
193 194 7.039152 TGTGGAAAATTCAAATTCTCATGCCTA 60.039 33.333 0.00 0.00 0.00 3.93
194 195 6.168389 GTGGAAAATTCAAATTCTCATGCCT 58.832 36.000 0.00 0.00 0.00 4.75
195 196 5.933463 TGTGGAAAATTCAAATTCTCATGCC 59.067 36.000 0.00 0.00 0.00 4.40
196 197 7.332430 TCATGTGGAAAATTCAAATTCTCATGC 59.668 33.333 14.21 0.00 0.00 4.06
197 198 8.766000 TCATGTGGAAAATTCAAATTCTCATG 57.234 30.769 13.53 13.53 0.00 3.07
198 199 9.781633 TTTCATGTGGAAAATTCAAATTCTCAT 57.218 25.926 0.00 0.00 42.37 2.90
213 214 9.465199 CCATATATCACCATATTTCATGTGGAA 57.535 33.333 6.31 0.00 43.52 3.53
214 215 8.613923 ACCATATATCACCATATTTCATGTGGA 58.386 33.333 6.31 0.00 43.52 4.02
215 216 8.812513 ACCATATATCACCATATTTCATGTGG 57.187 34.615 0.00 0.00 45.94 4.17
224 225 8.148351 GCCGTGTATAACCATATATCACCATAT 58.852 37.037 0.00 0.00 30.53 1.78
225 226 7.124448 TGCCGTGTATAACCATATATCACCATA 59.876 37.037 0.00 0.00 30.53 2.74
226 227 6.070481 TGCCGTGTATAACCATATATCACCAT 60.070 38.462 0.00 0.00 30.53 3.55
227 228 5.246429 TGCCGTGTATAACCATATATCACCA 59.754 40.000 0.00 0.00 30.53 4.17
228 229 5.726397 TGCCGTGTATAACCATATATCACC 58.274 41.667 0.00 0.00 30.53 4.02
229 230 7.661127 TTTGCCGTGTATAACCATATATCAC 57.339 36.000 0.00 0.00 0.00 3.06
230 231 8.678593 TTTTTGCCGTGTATAACCATATATCA 57.321 30.769 0.00 0.00 0.00 2.15
254 255 8.588290 ATTTTTCCAAACCTTAAAGCCTTTTT 57.412 26.923 0.00 0.00 0.00 1.94
255 256 8.465999 CAATTTTTCCAAACCTTAAAGCCTTTT 58.534 29.630 0.00 0.00 0.00 2.27
256 257 7.416213 GCAATTTTTCCAAACCTTAAAGCCTTT 60.416 33.333 0.00 0.00 0.00 3.11
257 258 6.039270 GCAATTTTTCCAAACCTTAAAGCCTT 59.961 34.615 0.00 0.00 0.00 4.35
258 259 5.530915 GCAATTTTTCCAAACCTTAAAGCCT 59.469 36.000 0.00 0.00 0.00 4.58
259 260 5.278266 GGCAATTTTTCCAAACCTTAAAGCC 60.278 40.000 0.00 0.00 0.00 4.35
260 261 5.530915 AGGCAATTTTTCCAAACCTTAAAGC 59.469 36.000 0.00 0.00 0.00 3.51
261 262 7.566760 AAGGCAATTTTTCCAAACCTTAAAG 57.433 32.000 0.00 0.00 34.37 1.85
262 263 7.611855 TCAAAGGCAATTTTTCCAAACCTTAAA 59.388 29.630 0.00 0.00 35.04 1.52
263 264 7.112779 TCAAAGGCAATTTTTCCAAACCTTAA 58.887 30.769 0.00 0.00 35.04 1.85
264 265 6.653989 TCAAAGGCAATTTTTCCAAACCTTA 58.346 32.000 0.00 0.00 35.04 2.69
265 266 5.504853 TCAAAGGCAATTTTTCCAAACCTT 58.495 33.333 0.00 0.00 37.64 3.50
266 267 5.109500 TCAAAGGCAATTTTTCCAAACCT 57.891 34.783 0.00 0.00 0.00 3.50
267 268 5.826601 TTCAAAGGCAATTTTTCCAAACC 57.173 34.783 0.00 0.00 0.00 3.27
268 269 8.700722 AAATTTCAAAGGCAATTTTTCCAAAC 57.299 26.923 0.00 0.00 29.98 2.93
269 270 9.148104 CAAAATTTCAAAGGCAATTTTTCCAAA 57.852 25.926 3.32 0.00 39.49 3.28
270 271 8.526147 TCAAAATTTCAAAGGCAATTTTTCCAA 58.474 25.926 3.32 0.00 39.49 3.53
271 272 8.059798 TCAAAATTTCAAAGGCAATTTTTCCA 57.940 26.923 3.32 0.00 39.49 3.53
272 273 8.923609 TTCAAAATTTCAAAGGCAATTTTTCC 57.076 26.923 3.32 0.00 39.49 3.13
276 277 9.949174 GTGTATTCAAAATTTCAAAGGCAATTT 57.051 25.926 0.00 0.00 34.68 1.82
277 278 9.118300 TGTGTATTCAAAATTTCAAAGGCAATT 57.882 25.926 0.00 0.00 0.00 2.32
278 279 8.558700 GTGTGTATTCAAAATTTCAAAGGCAAT 58.441 29.630 0.00 0.00 0.00 3.56
279 280 7.768120 AGTGTGTATTCAAAATTTCAAAGGCAA 59.232 29.630 0.00 0.00 0.00 4.52
280 281 7.271511 AGTGTGTATTCAAAATTTCAAAGGCA 58.728 30.769 0.00 0.00 0.00 4.75
281 282 7.437862 TGAGTGTGTATTCAAAATTTCAAAGGC 59.562 33.333 0.00 0.00 0.00 4.35
282 283 8.870160 TGAGTGTGTATTCAAAATTTCAAAGG 57.130 30.769 0.00 0.00 0.00 3.11
289 290 9.643693 GGATTTGATGAGTGTGTATTCAAAATT 57.356 29.630 0.00 0.00 0.00 1.82
290 291 9.028284 AGGATTTGATGAGTGTGTATTCAAAAT 57.972 29.630 0.00 0.00 0.00 1.82
291 292 8.298854 CAGGATTTGATGAGTGTGTATTCAAAA 58.701 33.333 0.00 0.00 0.00 2.44
292 293 7.094248 CCAGGATTTGATGAGTGTGTATTCAAA 60.094 37.037 0.00 0.00 0.00 2.69
293 294 6.375174 CCAGGATTTGATGAGTGTGTATTCAA 59.625 38.462 0.00 0.00 0.00 2.69
294 295 5.882000 CCAGGATTTGATGAGTGTGTATTCA 59.118 40.000 0.00 0.00 0.00 2.57
295 296 5.297776 CCCAGGATTTGATGAGTGTGTATTC 59.702 44.000 0.00 0.00 0.00 1.75
296 297 5.195940 CCCAGGATTTGATGAGTGTGTATT 58.804 41.667 0.00 0.00 0.00 1.89
297 298 4.785301 CCCAGGATTTGATGAGTGTGTAT 58.215 43.478 0.00 0.00 0.00 2.29
298 299 3.622206 GCCCAGGATTTGATGAGTGTGTA 60.622 47.826 0.00 0.00 0.00 2.90
299 300 2.881403 GCCCAGGATTTGATGAGTGTGT 60.881 50.000 0.00 0.00 0.00 3.72
300 301 1.747355 GCCCAGGATTTGATGAGTGTG 59.253 52.381 0.00 0.00 0.00 3.82
301 302 1.341383 GGCCCAGGATTTGATGAGTGT 60.341 52.381 0.00 0.00 0.00 3.55
302 303 1.396653 GGCCCAGGATTTGATGAGTG 58.603 55.000 0.00 0.00 0.00 3.51
303 304 0.259938 GGGCCCAGGATTTGATGAGT 59.740 55.000 19.95 0.00 0.00 3.41
304 305 0.820891 CGGGCCCAGGATTTGATGAG 60.821 60.000 24.92 0.00 0.00 2.90
305 306 1.227102 CGGGCCCAGGATTTGATGA 59.773 57.895 24.92 0.00 0.00 2.92
306 307 2.492773 GCGGGCCCAGGATTTGATG 61.493 63.158 24.92 1.45 0.00 3.07
307 308 2.123726 GCGGGCCCAGGATTTGAT 60.124 61.111 24.92 0.00 0.00 2.57
308 309 4.440829 GGCGGGCCCAGGATTTGA 62.441 66.667 24.92 0.00 0.00 2.69
326 327 0.320946 CACATGCCCTTTTTGCCAGG 60.321 55.000 0.00 0.00 0.00 4.45
327 328 0.680618 TCACATGCCCTTTTTGCCAG 59.319 50.000 0.00 0.00 0.00 4.85
328 329 1.350071 ATCACATGCCCTTTTTGCCA 58.650 45.000 0.00 0.00 0.00 4.92
329 330 2.078392 CAATCACATGCCCTTTTTGCC 58.922 47.619 0.00 0.00 0.00 4.52
330 331 2.078392 CCAATCACATGCCCTTTTTGC 58.922 47.619 0.00 0.00 0.00 3.68
331 332 2.038820 ACCCAATCACATGCCCTTTTTG 59.961 45.455 0.00 0.00 0.00 2.44
332 333 2.337849 ACCCAATCACATGCCCTTTTT 58.662 42.857 0.00 0.00 0.00 1.94
333 334 2.028561 ACCCAATCACATGCCCTTTT 57.971 45.000 0.00 0.00 0.00 2.27
334 335 2.028561 AACCCAATCACATGCCCTTT 57.971 45.000 0.00 0.00 0.00 3.11
335 336 1.901833 GAAACCCAATCACATGCCCTT 59.098 47.619 0.00 0.00 0.00 3.95
336 337 1.077663 AGAAACCCAATCACATGCCCT 59.922 47.619 0.00 0.00 0.00 5.19
337 338 1.205417 CAGAAACCCAATCACATGCCC 59.795 52.381 0.00 0.00 0.00 5.36
338 339 1.895131 ACAGAAACCCAATCACATGCC 59.105 47.619 0.00 0.00 0.00 4.40
339 340 2.927871 GCACAGAAACCCAATCACATGC 60.928 50.000 0.00 0.00 0.00 4.06
340 341 2.559668 AGCACAGAAACCCAATCACATG 59.440 45.455 0.00 0.00 0.00 3.21
341 342 2.559668 CAGCACAGAAACCCAATCACAT 59.440 45.455 0.00 0.00 0.00 3.21
342 343 1.955778 CAGCACAGAAACCCAATCACA 59.044 47.619 0.00 0.00 0.00 3.58
343 344 1.270550 CCAGCACAGAAACCCAATCAC 59.729 52.381 0.00 0.00 0.00 3.06
344 345 1.133513 ACCAGCACAGAAACCCAATCA 60.134 47.619 0.00 0.00 0.00 2.57
345 346 1.620822 ACCAGCACAGAAACCCAATC 58.379 50.000 0.00 0.00 0.00 2.67
346 347 2.086610 AACCAGCACAGAAACCCAAT 57.913 45.000 0.00 0.00 0.00 3.16
347 348 1.480137 CAAACCAGCACAGAAACCCAA 59.520 47.619 0.00 0.00 0.00 4.12
348 349 1.110442 CAAACCAGCACAGAAACCCA 58.890 50.000 0.00 0.00 0.00 4.51
349 350 0.249447 GCAAACCAGCACAGAAACCC 60.249 55.000 0.00 0.00 0.00 4.11
350 351 0.459489 TGCAAACCAGCACAGAAACC 59.541 50.000 0.00 0.00 40.11 3.27
351 352 1.843992 CTGCAAACCAGCACAGAAAC 58.156 50.000 0.00 0.00 40.11 2.78
360 361 4.347453 GTGGCCGCTGCAAACCAG 62.347 66.667 9.68 0.00 44.67 4.00
363 364 4.389576 CTCGTGGCCGCTGCAAAC 62.390 66.667 15.69 0.00 40.13 2.93
390 391 4.996434 ACAGCCTCGTGTGCAGCC 62.996 66.667 0.00 0.00 0.00 4.85
391 392 2.974698 AACAGCCTCGTGTGCAGC 60.975 61.111 0.00 0.00 0.00 5.25
392 393 2.610694 CCAACAGCCTCGTGTGCAG 61.611 63.158 0.00 0.00 0.00 4.41
393 394 2.591429 CCAACAGCCTCGTGTGCA 60.591 61.111 0.00 0.00 0.00 4.57
394 395 2.591715 ACCAACAGCCTCGTGTGC 60.592 61.111 0.00 0.00 0.00 4.57
395 396 2.896801 GCACCAACAGCCTCGTGTG 61.897 63.158 0.00 0.00 0.00 3.82
396 397 2.591715 GCACCAACAGCCTCGTGT 60.592 61.111 0.00 0.00 0.00 4.49
397 398 2.281070 AGCACCAACAGCCTCGTG 60.281 61.111 0.00 0.00 0.00 4.35
398 399 2.031163 GAGCACCAACAGCCTCGT 59.969 61.111 0.00 0.00 0.00 4.18
399 400 3.114616 CGAGCACCAACAGCCTCG 61.115 66.667 0.00 0.00 0.00 4.63
400 401 3.426568 GCGAGCACCAACAGCCTC 61.427 66.667 0.00 0.00 0.00 4.70
410 411 4.388499 TCTTTCCCCGGCGAGCAC 62.388 66.667 9.30 0.00 0.00 4.40
411 412 4.082523 CTCTTTCCCCGGCGAGCA 62.083 66.667 9.30 0.00 0.00 4.26
412 413 4.840005 CCTCTTTCCCCGGCGAGC 62.840 72.222 9.30 0.00 0.00 5.03
413 414 1.113517 TATCCTCTTTCCCCGGCGAG 61.114 60.000 9.30 0.00 0.00 5.03
414 415 1.075822 TATCCTCTTTCCCCGGCGA 60.076 57.895 9.30 0.00 0.00 5.54
415 416 1.367840 CTATCCTCTTTCCCCGGCG 59.632 63.158 0.00 0.00 0.00 6.46
416 417 0.763223 TCCTATCCTCTTTCCCCGGC 60.763 60.000 0.00 0.00 0.00 6.13
417 418 1.343069 CTCCTATCCTCTTTCCCCGG 58.657 60.000 0.00 0.00 0.00 5.73
418 419 1.343069 CCTCCTATCCTCTTTCCCCG 58.657 60.000 0.00 0.00 0.00 5.73
419 420 2.050918 CACCTCCTATCCTCTTTCCCC 58.949 57.143 0.00 0.00 0.00 4.81
420 421 2.050918 CCACCTCCTATCCTCTTTCCC 58.949 57.143 0.00 0.00 0.00 3.97
421 422 2.701423 GACCACCTCCTATCCTCTTTCC 59.299 54.545 0.00 0.00 0.00 3.13
422 423 2.362717 CGACCACCTCCTATCCTCTTTC 59.637 54.545 0.00 0.00 0.00 2.62
423 424 2.389715 CGACCACCTCCTATCCTCTTT 58.610 52.381 0.00 0.00 0.00 2.52
424 425 1.411787 CCGACCACCTCCTATCCTCTT 60.412 57.143 0.00 0.00 0.00 2.85
425 426 0.186386 CCGACCACCTCCTATCCTCT 59.814 60.000 0.00 0.00 0.00 3.69
426 427 0.106116 ACCGACCACCTCCTATCCTC 60.106 60.000 0.00 0.00 0.00 3.71
427 428 0.338814 AACCGACCACCTCCTATCCT 59.661 55.000 0.00 0.00 0.00 3.24
428 429 0.464452 CAACCGACCACCTCCTATCC 59.536 60.000 0.00 0.00 0.00 2.59
429 430 1.409427 CTCAACCGACCACCTCCTATC 59.591 57.143 0.00 0.00 0.00 2.08
430 431 1.486211 CTCAACCGACCACCTCCTAT 58.514 55.000 0.00 0.00 0.00 2.57
431 432 0.613853 CCTCAACCGACCACCTCCTA 60.614 60.000 0.00 0.00 0.00 2.94
432 433 1.913762 CCTCAACCGACCACCTCCT 60.914 63.158 0.00 0.00 0.00 3.69
433 434 2.214920 ACCTCAACCGACCACCTCC 61.215 63.158 0.00 0.00 0.00 4.30
434 435 1.004918 CACCTCAACCGACCACCTC 60.005 63.158 0.00 0.00 0.00 3.85
435 436 2.516888 CCACCTCAACCGACCACCT 61.517 63.158 0.00 0.00 0.00 4.00
436 437 2.032071 CCACCTCAACCGACCACC 59.968 66.667 0.00 0.00 0.00 4.61
437 438 0.602905 CTTCCACCTCAACCGACCAC 60.603 60.000 0.00 0.00 0.00 4.16
438 439 1.752198 CTTCCACCTCAACCGACCA 59.248 57.895 0.00 0.00 0.00 4.02
439 440 1.003718 CCTTCCACCTCAACCGACC 60.004 63.158 0.00 0.00 0.00 4.79
440 441 0.395312 TTCCTTCCACCTCAACCGAC 59.605 55.000 0.00 0.00 0.00 4.79
441 442 0.685097 CTTCCTTCCACCTCAACCGA 59.315 55.000 0.00 0.00 0.00 4.69
442 443 0.685097 TCTTCCTTCCACCTCAACCG 59.315 55.000 0.00 0.00 0.00 4.44
443 444 2.372172 TCTTCTTCCTTCCACCTCAACC 59.628 50.000 0.00 0.00 0.00 3.77
444 445 3.771577 TCTTCTTCCTTCCACCTCAAC 57.228 47.619 0.00 0.00 0.00 3.18
445 446 5.785423 TCTTATCTTCTTCCTTCCACCTCAA 59.215 40.000 0.00 0.00 0.00 3.02
446 447 5.187967 GTCTTATCTTCTTCCTTCCACCTCA 59.812 44.000 0.00 0.00 0.00 3.86
447 448 5.187967 TGTCTTATCTTCTTCCTTCCACCTC 59.812 44.000 0.00 0.00 0.00 3.85
448 449 5.094387 TGTCTTATCTTCTTCCTTCCACCT 58.906 41.667 0.00 0.00 0.00 4.00
449 450 5.422214 TGTCTTATCTTCTTCCTTCCACC 57.578 43.478 0.00 0.00 0.00 4.61
450 451 7.162082 TCTTTGTCTTATCTTCTTCCTTCCAC 58.838 38.462 0.00 0.00 0.00 4.02
451 452 7.316393 TCTTTGTCTTATCTTCTTCCTTCCA 57.684 36.000 0.00 0.00 0.00 3.53
452 453 8.622948 TTTCTTTGTCTTATCTTCTTCCTTCC 57.377 34.615 0.00 0.00 0.00 3.46
479 480 1.353022 TCCCACGCCTCCTATGTTTTT 59.647 47.619 0.00 0.00 0.00 1.94
480 481 0.988832 TCCCACGCCTCCTATGTTTT 59.011 50.000 0.00 0.00 0.00 2.43
481 482 1.213296 ATCCCACGCCTCCTATGTTT 58.787 50.000 0.00 0.00 0.00 2.83
482 483 1.971357 CTATCCCACGCCTCCTATGTT 59.029 52.381 0.00 0.00 0.00 2.71
483 484 1.147191 TCTATCCCACGCCTCCTATGT 59.853 52.381 0.00 0.00 0.00 2.29
484 485 1.546476 GTCTATCCCACGCCTCCTATG 59.454 57.143 0.00 0.00 0.00 2.23
485 486 1.887088 CGTCTATCCCACGCCTCCTAT 60.887 57.143 0.00 0.00 0.00 2.57
486 487 0.536687 CGTCTATCCCACGCCTCCTA 60.537 60.000 0.00 0.00 0.00 2.94
487 488 1.828660 CGTCTATCCCACGCCTCCT 60.829 63.158 0.00 0.00 0.00 3.69
488 489 2.728817 CGTCTATCCCACGCCTCC 59.271 66.667 0.00 0.00 0.00 4.30
494 495 0.318784 GGATCGTGCGTCTATCCCAC 60.319 60.000 0.00 0.00 33.76 4.61
495 496 2.038690 GGATCGTGCGTCTATCCCA 58.961 57.895 0.00 0.00 33.76 4.37
496 497 1.289380 GGGATCGTGCGTCTATCCC 59.711 63.158 12.12 12.12 46.55 3.85
497 498 1.531423 TAGGGATCGTGCGTCTATCC 58.469 55.000 0.00 0.00 37.58 2.59
498 499 3.312973 CCTATAGGGATCGTGCGTCTATC 59.687 52.174 11.33 0.00 37.23 2.08
499 500 3.280295 CCTATAGGGATCGTGCGTCTAT 58.720 50.000 11.33 0.00 37.23 1.98
500 501 2.039480 ACCTATAGGGATCGTGCGTCTA 59.961 50.000 22.91 0.00 40.27 2.59
501 502 1.202903 ACCTATAGGGATCGTGCGTCT 60.203 52.381 22.91 0.00 40.27 4.18
502 503 1.245732 ACCTATAGGGATCGTGCGTC 58.754 55.000 22.91 0.00 40.27 5.19
503 504 1.340248 CAACCTATAGGGATCGTGCGT 59.660 52.381 22.91 0.00 40.27 5.24
504 505 1.611977 TCAACCTATAGGGATCGTGCG 59.388 52.381 22.91 2.32 40.27 5.34
505 506 3.673594 CGATCAACCTATAGGGATCGTGC 60.674 52.174 31.85 14.84 44.25 5.34
506 507 3.756963 TCGATCAACCTATAGGGATCGTG 59.243 47.826 34.87 21.78 46.71 4.35
507 508 4.011023 CTCGATCAACCTATAGGGATCGT 58.989 47.826 34.87 17.56 46.71 3.73
509 510 3.181495 CGCTCGATCAACCTATAGGGATC 60.181 52.174 22.91 21.34 40.27 3.36
510 511 2.755655 CGCTCGATCAACCTATAGGGAT 59.244 50.000 22.91 15.74 40.27 3.85
511 512 2.160205 CGCTCGATCAACCTATAGGGA 58.840 52.381 22.91 11.60 40.27 4.20
512 513 1.402984 GCGCTCGATCAACCTATAGGG 60.403 57.143 22.91 6.22 40.27 3.53
513 514 1.269723 TGCGCTCGATCAACCTATAGG 59.730 52.381 17.73 17.73 42.17 2.57
514 515 2.287608 TGTGCGCTCGATCAACCTATAG 60.288 50.000 9.73 0.00 0.00 1.31
515 516 1.679153 TGTGCGCTCGATCAACCTATA 59.321 47.619 9.73 0.00 0.00 1.31
516 517 0.459899 TGTGCGCTCGATCAACCTAT 59.540 50.000 9.73 0.00 0.00 2.57
517 518 0.459899 ATGTGCGCTCGATCAACCTA 59.540 50.000 9.73 0.00 0.00 3.08
518 519 1.086067 CATGTGCGCTCGATCAACCT 61.086 55.000 9.73 0.00 0.00 3.50
519 520 1.083806 TCATGTGCGCTCGATCAACC 61.084 55.000 9.73 0.00 0.00 3.77
520 521 0.025513 GTCATGTGCGCTCGATCAAC 59.974 55.000 9.73 0.00 0.00 3.18
521 522 1.413008 CGTCATGTGCGCTCGATCAA 61.413 55.000 9.73 0.00 0.00 2.57
522 523 1.873572 CGTCATGTGCGCTCGATCA 60.874 57.895 9.73 0.44 0.00 2.92
523 524 1.874019 ACGTCATGTGCGCTCGATC 60.874 57.895 9.73 0.00 0.00 3.69
524 525 2.160853 CACGTCATGTGCGCTCGAT 61.161 57.895 9.73 0.00 42.70 3.59
525 526 2.804931 CACGTCATGTGCGCTCGA 60.805 61.111 9.73 0.00 42.70 4.04
533 534 2.048222 CGGCTGGTCACGTCATGT 60.048 61.111 0.00 0.00 0.00 3.21
534 535 0.740868 ATTCGGCTGGTCACGTCATG 60.741 55.000 0.00 0.00 0.00 3.07
535 536 0.460284 GATTCGGCTGGTCACGTCAT 60.460 55.000 0.00 0.00 0.00 3.06
536 537 1.080093 GATTCGGCTGGTCACGTCA 60.080 57.895 0.00 0.00 0.00 4.35
537 538 2.158959 CGATTCGGCTGGTCACGTC 61.159 63.158 0.00 0.00 0.00 4.34
538 539 2.126071 CGATTCGGCTGGTCACGT 60.126 61.111 0.00 0.00 0.00 4.49
539 540 1.683790 GAACGATTCGGCTGGTCACG 61.684 60.000 11.29 0.00 0.00 4.35
540 541 2.079049 GAACGATTCGGCTGGTCAC 58.921 57.895 11.29 0.00 0.00 3.67
541 542 4.590487 GAACGATTCGGCTGGTCA 57.410 55.556 11.29 0.00 0.00 4.02
550 551 3.861263 GTGCCGGCCGAACGATTC 61.861 66.667 30.73 6.72 35.47 2.52
563 564 3.608041 GTTTCAAAACGGCGTGCC 58.392 55.556 15.70 0.00 0.00 5.01
575 576 8.766151 GGCAAATATTTTTAGGAAAACGTTTCA 58.234 29.630 15.01 0.00 37.56 2.69
576 577 8.984764 AGGCAAATATTTTTAGGAAAACGTTTC 58.015 29.630 15.01 7.87 37.56 2.78
577 578 8.769891 CAGGCAAATATTTTTAGGAAAACGTTT 58.230 29.630 7.96 7.96 37.56 3.60
578 579 7.386573 CCAGGCAAATATTTTTAGGAAAACGTT 59.613 33.333 0.00 0.00 37.56 3.99
579 580 6.871492 CCAGGCAAATATTTTTAGGAAAACGT 59.129 34.615 0.00 0.00 37.56 3.99
580 581 7.062956 GTCCAGGCAAATATTTTTAGGAAAACG 59.937 37.037 0.00 0.00 37.56 3.60
581 582 8.094548 AGTCCAGGCAAATATTTTTAGGAAAAC 58.905 33.333 0.00 0.00 37.56 2.43
585 586 6.489603 TCAGTCCAGGCAAATATTTTTAGGA 58.510 36.000 0.00 1.58 0.00 2.94
589 590 7.452562 ACAATTCAGTCCAGGCAAATATTTTT 58.547 30.769 0.00 0.00 0.00 1.94
600 601 4.916983 TTGTCAAACAATTCAGTCCAGG 57.083 40.909 0.00 0.00 32.34 4.45
641 642 3.508402 CGCCCAAACTTAATTTACCCACT 59.492 43.478 0.00 0.00 0.00 4.00
646 647 2.494471 AGGGCGCCCAAACTTAATTTAC 59.506 45.455 45.13 14.93 38.92 2.01
647 648 2.810164 AGGGCGCCCAAACTTAATTTA 58.190 42.857 45.13 0.00 38.92 1.40
697 703 0.539438 AGGCTGCGGGTTTGAATGAA 60.539 50.000 0.00 0.00 0.00 2.57
723 729 2.697425 CAGCGCGTCATGCAGTAC 59.303 61.111 8.43 0.00 46.97 2.73
737 743 3.792716 AAAAATAGTGCCGTGCAGC 57.207 47.368 0.00 0.00 40.08 5.25
754 760 1.064357 GGTGCACTCCGTTTCGAAAAA 59.936 47.619 17.98 0.44 0.00 1.94
755 761 0.658897 GGTGCACTCCGTTTCGAAAA 59.341 50.000 17.98 0.00 0.00 2.29
756 762 1.492319 CGGTGCACTCCGTTTCGAAA 61.492 55.000 17.98 6.47 44.77 3.46
757 763 1.952133 CGGTGCACTCCGTTTCGAA 60.952 57.895 17.98 0.00 44.77 3.71
758 764 2.355363 CGGTGCACTCCGTTTCGA 60.355 61.111 17.98 0.00 44.77 3.71
769 775 2.842208 GCAATTTATAGTGCGGTGCA 57.158 45.000 0.00 0.00 35.47 4.57
830 836 4.696877 GTGTGATGAACTGATGATTGGTGA 59.303 41.667 0.00 0.00 0.00 4.02
862 868 1.447140 GCCATGTCGTTCGTGCCTA 60.447 57.895 0.00 0.00 0.00 3.93
1101 1109 1.005805 TCGGGTGGCTGTACTAAGGTA 59.994 52.381 0.00 0.00 0.00 3.08
1143 1185 4.800914 GCGAATGATATGGCAACTACTCCT 60.801 45.833 0.00 0.00 37.61 3.69
1145 1187 4.058124 TGCGAATGATATGGCAACTACTC 58.942 43.478 0.00 0.00 31.50 2.59
1146 1188 3.809832 GTGCGAATGATATGGCAACTACT 59.190 43.478 0.00 0.00 37.12 2.57
1148 1190 2.799978 CGTGCGAATGATATGGCAACTA 59.200 45.455 0.00 0.00 37.12 2.24
1149 1191 1.599071 CGTGCGAATGATATGGCAACT 59.401 47.619 0.00 0.00 37.12 3.16
1150 1192 1.921573 GCGTGCGAATGATATGGCAAC 60.922 52.381 0.00 0.00 37.12 4.17
1151 1193 0.307453 GCGTGCGAATGATATGGCAA 59.693 50.000 0.00 0.00 37.12 4.52
1152 1194 1.830368 CGCGTGCGAATGATATGGCA 61.830 55.000 8.89 0.00 42.83 4.92
1153 1195 1.154599 CGCGTGCGAATGATATGGC 60.155 57.895 8.89 0.00 42.83 4.40
1154 1196 2.516486 TCGCGTGCGAATGATATGG 58.484 52.632 15.36 0.00 46.01 2.74
1164 1206 2.088763 AGACTGACATTCGCGTGCG 61.089 57.895 5.77 8.14 41.35 5.34
1165 1207 1.008875 TCAGACTGACATTCGCGTGC 61.009 55.000 5.77 0.00 0.00 5.34
1166 1208 0.710567 GTCAGACTGACATTCGCGTG 59.289 55.000 27.15 0.00 46.22 5.34
1167 1209 3.108521 GTCAGACTGACATTCGCGT 57.891 52.632 27.15 0.00 46.22 6.01
1175 1217 2.219325 CTCTGGGCGGTCAGACTGAC 62.219 65.000 24.76 24.76 46.23 3.51
1176 1218 1.979155 CTCTGGGCGGTCAGACTGA 60.979 63.158 14.10 0.00 38.70 3.41
1177 1219 1.821061 AACTCTGGGCGGTCAGACTG 61.821 60.000 4.84 4.84 38.70 3.51
1178 1220 1.534235 AACTCTGGGCGGTCAGACT 60.534 57.895 0.00 0.00 38.70 3.24
1188 1230 2.496070 TCATTACACGGAGAACTCTGGG 59.504 50.000 10.87 10.87 44.78 4.45
1380 1744 1.475280 CTCGACGGGGACATTCTTGTA 59.525 52.381 0.00 0.00 35.79 2.41
1464 1962 4.382254 CGTAGAGTGGCCAATACCTACAAA 60.382 45.833 23.74 0.00 0.00 2.83
1477 1975 0.889306 AGTCAAGGACGTAGAGTGGC 59.111 55.000 0.00 0.00 37.67 5.01
1481 1979 1.811359 ACGGAAGTCAAGGACGTAGAG 59.189 52.381 0.00 0.00 44.19 2.43
1559 2064 2.747686 GAGGCTTCCGACAACCCA 59.252 61.111 0.00 0.00 0.00 4.51
1571 2076 1.895020 TTATTGTGGACGCGGAGGCT 61.895 55.000 12.47 0.00 36.88 4.58
1577 2082 1.006832 CCCTTCTTATTGTGGACGCG 58.993 55.000 3.53 3.53 0.00 6.01
1583 2088 1.135689 GCGTGTGCCCTTCTTATTGTG 60.136 52.381 0.00 0.00 33.98 3.33
1604 2109 0.392863 CAGCGGTGATGGGATGAACA 60.393 55.000 9.50 0.00 0.00 3.18
1800 2441 6.229936 ACTACATAAGGAGGCGTTTTATGA 57.770 37.500 21.39 10.81 37.90 2.15
1853 2496 3.415212 TCCAATGCCAAGTTCTCTGAAG 58.585 45.455 0.00 0.00 0.00 3.02
1890 2533 4.162509 GGATAGAAAACCTCTGCCTAGTGT 59.837 45.833 0.00 0.00 35.41 3.55
1932 2575 1.259609 TCGTCCTCCCGTAACATGTT 58.740 50.000 16.68 16.68 0.00 2.71
1936 2579 1.205417 GGAAATCGTCCTCCCGTAACA 59.795 52.381 0.00 0.00 43.98 2.41
1937 2580 1.800286 CGGAAATCGTCCTCCCGTAAC 60.800 57.143 0.00 0.00 45.36 2.50
1942 2585 1.078708 TTGCGGAAATCGTCCTCCC 60.079 57.895 0.00 0.00 45.36 4.30
1943 2586 1.090052 CCTTGCGGAAATCGTCCTCC 61.090 60.000 0.00 0.00 45.36 4.30
2024 2688 7.298507 CATTGGGATGCATTTGTTAGAAAAG 57.701 36.000 0.00 0.00 0.00 2.27
2046 2710 5.253330 TCTTGGGAGATTCTAAAAACGCAT 58.747 37.500 0.00 0.00 0.00 4.73
2159 2823 2.124109 TGAACCCAAGCCAACGCA 60.124 55.556 0.00 0.00 37.52 5.24
2234 2898 1.135139 GACAGCGCTATCAGGTTCTGA 59.865 52.381 10.99 0.00 44.99 3.27
2245 2909 1.938657 GAGCTCCACAGACAGCGCTA 61.939 60.000 10.99 0.00 40.84 4.26
2378 3051 6.127253 CCAATTAAGTGGCTTTCCAAGATGAT 60.127 38.462 9.33 0.00 45.53 2.45
2384 3057 3.582164 ACCCAATTAAGTGGCTTTCCAA 58.418 40.909 16.54 0.00 45.53 3.53
2411 3084 4.760715 GCATCAGCATAGTGATTGATTCCT 59.239 41.667 0.00 0.00 41.58 3.36
2574 3247 2.774234 CACTCAGGGGATACATCCTTGT 59.226 50.000 8.14 0.00 46.35 3.16
2590 3263 4.493547 CTTGCCAAAAAGTTCAACACTCA 58.506 39.130 0.00 0.00 32.94 3.41
2623 3296 5.838521 AGGATGGAAATGTGTTACAAAAGGT 59.161 36.000 0.00 0.00 0.00 3.50
2685 3360 2.345760 GGAGGTCCGACGCTTACCA 61.346 63.158 12.81 0.00 35.64 3.25
2697 3372 3.468140 GGCCCCTGTACGGAGGTC 61.468 72.222 2.31 0.00 33.16 3.85
2910 6810 3.668447 AGTCATCACAATCCACAGTGAC 58.332 45.455 0.62 0.00 46.38 3.67
3030 6930 1.835483 GATCGGCGCCACTGCATAAG 61.835 60.000 28.98 6.54 37.32 1.73
3106 7006 2.497675 GAGAAGTACCACCATCAGAGCA 59.502 50.000 0.00 0.00 0.00 4.26
3149 7049 7.451005 GGTTCAGACCTAGGTTTTTCACCCT 62.451 48.000 17.53 2.46 44.09 4.34
3227 7127 2.366590 TCTGAGCATATCCGAGCAATGT 59.633 45.455 0.00 0.00 0.00 2.71
3263 7164 5.447818 CCAAAGGCTAGCGTCTAGATTTTTG 60.448 44.000 10.89 8.56 0.00 2.44
3276 7177 1.745489 CCGACCACCAAAGGCTAGC 60.745 63.158 6.04 6.04 0.00 3.42
3311 7212 3.689649 GGACAGCGAGGTTATTCAACAAT 59.310 43.478 0.00 0.00 36.29 2.71
3312 7213 3.071479 GGACAGCGAGGTTATTCAACAA 58.929 45.455 0.00 0.00 36.29 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.