Multiple sequence alignment - TraesCS2B01G355800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G355800 chr2B 100.000 5496 0 0 1 5496 507832458 507826963 0.000000e+00 10150.0
1 TraesCS2B01G355800 chr2B 83.989 356 35 6 1330 1671 795711560 795711907 6.870000e-84 322.0
2 TraesCS2B01G355800 chr2B 98.438 128 2 0 685 812 162515520 162515647 5.540000e-55 226.0
3 TraesCS2B01G355800 chr2D 96.527 2361 46 13 2820 5178 430005624 430003298 0.000000e+00 3873.0
4 TraesCS2B01G355800 chr2D 89.450 1962 121 40 918 2827 430007621 430005694 0.000000e+00 2398.0
5 TraesCS2B01G355800 chr2D 84.250 673 71 20 1 648 430008403 430007741 1.680000e-174 623.0
6 TraesCS2B01G355800 chr2D 85.522 297 13 14 5216 5496 430003302 430003020 3.240000e-72 283.0
7 TraesCS2B01G355800 chr2D 93.443 61 4 0 5297 5357 473093783 473093723 2.110000e-14 91.6
8 TraesCS2B01G355800 chr2D 90.000 70 4 2 829 895 430007693 430007624 2.730000e-13 87.9
9 TraesCS2B01G355800 chr2A 94.672 1858 60 7 2822 4673 557048076 557049900 0.000000e+00 2846.0
10 TraesCS2B01G355800 chr2A 88.006 2076 136 40 811 2827 557045919 557047940 0.000000e+00 2350.0
11 TraesCS2B01G355800 chr2A 88.309 479 42 6 4817 5295 557050119 557050583 3.720000e-156 562.0
12 TraesCS2B01G355800 chr2A 78.562 723 65 42 1 687 557005515 557006183 1.430000e-105 394.0
13 TraesCS2B01G355800 chr2A 92.708 192 6 4 4566 4755 557049935 557050120 2.520000e-68 270.0
14 TraesCS2B01G355800 chr2A 96.491 57 2 0 5297 5353 125205754 125205698 1.630000e-15 95.3
15 TraesCS2B01G355800 chr6B 90.814 381 23 7 4530 4906 720707949 720707577 2.960000e-137 499.0
16 TraesCS2B01G355800 chr6B 99.225 129 1 0 685 813 54420668 54420796 3.310000e-57 233.0
17 TraesCS2B01G355800 chr6B 93.478 138 9 0 676 813 39364694 39364831 7.220000e-49 206.0
18 TraesCS2B01G355800 chr4B 98.450 129 2 0 685 813 116479272 116479400 1.540000e-55 228.0
19 TraesCS2B01G355800 chr4B 84.466 206 12 4 1278 1482 144286447 144286633 9.400000e-43 185.0
20 TraesCS2B01G355800 chr7B 95.139 144 6 1 672 814 726369708 726369851 5.540000e-55 226.0
21 TraesCS2B01G355800 chr7B 96.875 128 4 0 686 813 728671831 728671958 1.200000e-51 215.0
22 TraesCS2B01G355800 chr3A 97.638 127 3 0 686 812 69626166 69626040 9.270000e-53 219.0
23 TraesCS2B01G355800 chr3A 82.320 181 23 4 1332 1510 354899011 354899184 1.230000e-31 148.0
24 TraesCS2B01G355800 chr3B 92.105 152 11 1 665 816 200483863 200484013 4.310000e-51 213.0
25 TraesCS2B01G355800 chr7A 91.447 152 11 2 685 834 721227277 721227126 2.010000e-49 207.0
26 TraesCS2B01G355800 chr1A 84.951 206 13 2 1277 1482 212155210 212155023 5.620000e-45 193.0
27 TraesCS2B01G355800 chr5D 83.415 205 14 4 1278 1482 25522278 25522462 7.320000e-39 172.0
28 TraesCS2B01G355800 chr5D 90.909 66 4 2 5288 5353 29900989 29901052 2.730000e-13 87.9
29 TraesCS2B01G355800 chr6A 94.030 67 3 1 5288 5353 101302113 101302047 3.500000e-17 100.0
30 TraesCS2B01G355800 chr5B 91.304 69 6 0 5290 5358 478675848 478675916 1.630000e-15 95.3
31 TraesCS2B01G355800 chr6D 92.188 64 5 0 5294 5357 150161555 150161618 2.110000e-14 91.6
32 TraesCS2B01G355800 chr6D 92.063 63 3 1 5297 5357 87467522 87467584 2.730000e-13 87.9
33 TraesCS2B01G355800 chr7D 91.803 61 5 0 5297 5357 549516522 549516462 9.810000e-13 86.1
34 TraesCS2B01G355800 chr5A 89.231 65 5 2 5295 5358 430490877 430490814 4.560000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G355800 chr2B 507826963 507832458 5495 True 10150.00 10150 100.00000 1 5496 1 chr2B.!!$R1 5495
1 TraesCS2B01G355800 chr2D 430003020 430008403 5383 True 1452.98 3873 89.14980 1 5496 5 chr2D.!!$R2 5495
2 TraesCS2B01G355800 chr2A 557045919 557050583 4664 False 1507.00 2846 90.92375 811 5295 4 chr2A.!!$F2 4484
3 TraesCS2B01G355800 chr2A 557005515 557006183 668 False 394.00 394 78.56200 1 687 1 chr2A.!!$F1 686

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
700 766 0.113776 ACAGTACTCCCTCCGTTCCA 59.886 55.0 0.00 0.0 0.00 3.53 F
1963 2106 0.034896 TCTTCCTTCACGGCCACTTC 59.965 55.0 2.24 0.0 0.00 3.01 F
2111 2265 0.107654 AGCTGGTTCCGATTGTAGCC 60.108 55.0 0.00 0.0 31.82 3.93 F
2556 2711 0.107831 TTTGTGTCGAGGGGTGGAAG 59.892 55.0 0.00 0.0 0.00 3.46 F
2916 3214 0.392998 CCTGAACCTGAATGGACCGG 60.393 60.0 0.00 0.0 39.71 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2532 2687 0.106149 ACCCCTCGACACAAACTGAC 59.894 55.0 0.00 0.00 0.00 3.51 R
2897 3195 0.392998 CCGGTCCATTCAGGTTCAGG 60.393 60.0 0.00 0.00 39.02 3.86 R
3412 3717 0.820871 GAGTTGGACTCGAGCAGGAT 59.179 55.0 13.61 0.00 35.28 3.24 R
4197 4502 0.957395 TCAAGCAGCTTAGGCAGTGC 60.957 55.0 7.52 6.55 41.70 4.40 R
4913 5359 0.321996 GCGAGAACCTTCAAGACCCT 59.678 55.0 0.00 0.00 0.00 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
203 206 3.196648 CCGCAGAAAATTCCCGGG 58.803 61.111 16.85 16.85 38.29 5.73
204 207 1.377987 CCGCAGAAAATTCCCGGGA 60.378 57.895 22.63 22.63 38.29 5.14
206 209 1.102978 CGCAGAAAATTCCCGGGATT 58.897 50.000 27.48 19.30 0.00 3.01
226 234 1.951130 CACTGCACTTGCGTCTCGT 60.951 57.895 0.00 0.00 45.83 4.18
265 273 2.774951 CGTGCGTCGTCCGATGAAC 61.775 63.158 12.77 11.08 39.56 3.18
343 370 0.321653 AAGTTTGAGGCCGGTAGCAG 60.322 55.000 1.90 0.00 46.50 4.24
347 374 2.512515 GAGGCCGGTAGCAGCAAG 60.513 66.667 1.90 0.00 46.50 4.01
363 390 1.267932 GCAAGCAAGCAGATGATCGAC 60.268 52.381 0.00 0.00 0.00 4.20
376 403 2.972625 TGATCGACCATGTGAGGAAAC 58.027 47.619 0.00 0.00 0.00 2.78
380 407 2.875933 TCGACCATGTGAGGAAACAAAC 59.124 45.455 0.00 0.00 32.81 2.93
387 414 3.791245 TGTGAGGAAACAAACCAATTGC 58.209 40.909 0.00 0.00 43.13 3.56
389 416 3.803778 GTGAGGAAACAAACCAATTGCAG 59.196 43.478 0.00 0.00 43.13 4.41
390 417 2.802247 GAGGAAACAAACCAATTGCAGC 59.198 45.455 0.00 0.00 43.13 5.25
391 418 2.435437 AGGAAACAAACCAATTGCAGCT 59.565 40.909 0.00 0.00 43.13 4.24
393 420 2.138596 AACAAACCAATTGCAGCTCG 57.861 45.000 0.00 0.00 43.13 5.03
397 424 0.537143 AACCAATTGCAGCTCGTGGA 60.537 50.000 13.78 0.00 33.39 4.02
398 425 0.537143 ACCAATTGCAGCTCGTGGAA 60.537 50.000 13.78 0.00 41.30 3.53
401 428 0.962356 AATTGCAGCTCGTGGAAGGG 60.962 55.000 0.00 0.00 40.25 3.95
402 429 4.704833 TGCAGCTCGTGGAAGGGC 62.705 66.667 0.00 0.00 0.00 5.19
403 430 4.704833 GCAGCTCGTGGAAGGGCA 62.705 66.667 0.00 0.00 0.00 5.36
404 431 2.270205 CAGCTCGTGGAAGGGCAT 59.730 61.111 0.00 0.00 0.00 4.40
405 432 1.817099 CAGCTCGTGGAAGGGCATC 60.817 63.158 0.00 0.00 0.00 3.91
406 433 1.992277 AGCTCGTGGAAGGGCATCT 60.992 57.895 0.00 0.00 0.00 2.90
407 434 1.817099 GCTCGTGGAAGGGCATCTG 60.817 63.158 0.00 0.00 0.00 2.90
426 475 4.898607 CCCCCATGATTACCCGTG 57.101 61.111 0.00 0.00 0.00 4.94
427 476 1.150536 CCCCCATGATTACCCGTGG 59.849 63.158 0.00 0.00 41.71 4.94
463 512 5.658468 GGCTTGTTCTACGTTATCCTTAGT 58.342 41.667 0.00 0.00 0.00 2.24
464 513 6.458751 CGGCTTGTTCTACGTTATCCTTAGTA 60.459 42.308 0.00 0.00 0.00 1.82
465 514 6.916932 GGCTTGTTCTACGTTATCCTTAGTAG 59.083 42.308 0.00 0.00 38.24 2.57
466 515 7.416101 GGCTTGTTCTACGTTATCCTTAGTAGT 60.416 40.741 0.00 0.00 38.12 2.73
467 516 7.643371 GCTTGTTCTACGTTATCCTTAGTAGTC 59.357 40.741 0.00 0.00 38.12 2.59
490 539 4.021104 CAGGGAAATACGATGAGCTGGATA 60.021 45.833 0.00 0.00 0.00 2.59
504 553 5.191124 TGAGCTGGATAGATGCCAATCATAT 59.809 40.000 0.00 0.00 35.05 1.78
507 556 5.630774 GCTGGATAGATGCCAATCATATCCA 60.631 44.000 16.97 16.97 42.78 3.41
517 569 7.281040 TGCCAATCATATCCAGATTCTTTTC 57.719 36.000 0.00 0.00 33.64 2.29
550 606 8.098220 TGTCATCGATGAAGAAAAGAAAATGA 57.902 30.769 28.83 0.00 38.75 2.57
551 607 8.733458 TGTCATCGATGAAGAAAAGAAAATGAT 58.267 29.630 28.83 0.00 38.75 2.45
572 628 3.312736 AAGCTTTCCTCCACCAAGAAA 57.687 42.857 0.00 0.00 0.00 2.52
579 635 3.373565 CCACCAAGAAAGCCGGCC 61.374 66.667 26.15 8.19 0.00 6.13
600 666 3.367292 CCGGCTTTATGAACTGCAACAAT 60.367 43.478 0.00 0.00 0.00 2.71
638 704 2.962859 AGGCAAGAAATGGAAACCACT 58.037 42.857 0.00 0.00 35.80 4.00
648 714 4.789012 ATGGAAACCACTAAACAGCATG 57.211 40.909 0.00 0.00 38.33 4.06
649 715 4.151883 ATGGAAACCACTAAACAGCATGT 58.848 39.130 0.00 0.00 45.88 3.21
651 717 5.772672 ATGGAAACCACTAAACAGCATGTAA 59.227 36.000 0.00 0.00 43.63 2.41
682 748 7.770366 TCTTCTATAAAACTTGGGGGAAAAC 57.230 36.000 0.00 0.00 0.00 2.43
689 755 3.503800 ACTTGGGGGAAAACAGTACTC 57.496 47.619 0.00 0.00 0.00 2.59
694 760 2.783609 GGGAAAACAGTACTCCCTCC 57.216 55.000 9.40 5.77 44.81 4.30
695 761 1.066358 GGGAAAACAGTACTCCCTCCG 60.066 57.143 9.40 0.00 44.81 4.63
696 762 1.622312 GGAAAACAGTACTCCCTCCGT 59.378 52.381 0.00 0.00 0.00 4.69
697 763 2.038164 GGAAAACAGTACTCCCTCCGTT 59.962 50.000 0.00 0.00 0.00 4.44
698 764 3.324117 GAAAACAGTACTCCCTCCGTTC 58.676 50.000 0.00 0.00 0.00 3.95
699 765 1.264295 AACAGTACTCCCTCCGTTCC 58.736 55.000 0.00 0.00 0.00 3.62
700 766 0.113776 ACAGTACTCCCTCCGTTCCA 59.886 55.000 0.00 0.00 0.00 3.53
701 767 1.263356 CAGTACTCCCTCCGTTCCAA 58.737 55.000 0.00 0.00 0.00 3.53
702 768 1.621814 CAGTACTCCCTCCGTTCCAAA 59.378 52.381 0.00 0.00 0.00 3.28
703 769 2.236395 CAGTACTCCCTCCGTTCCAAAT 59.764 50.000 0.00 0.00 0.00 2.32
704 770 2.910977 AGTACTCCCTCCGTTCCAAATT 59.089 45.455 0.00 0.00 0.00 1.82
705 771 4.081309 CAGTACTCCCTCCGTTCCAAATTA 60.081 45.833 0.00 0.00 0.00 1.40
706 772 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
707 773 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
708 774 3.329814 ACTCCCTCCGTTCCAAATTACTT 59.670 43.478 0.00 0.00 0.00 2.24
709 775 3.681593 TCCCTCCGTTCCAAATTACTTG 58.318 45.455 0.00 0.00 34.52 3.16
710 776 3.073356 TCCCTCCGTTCCAAATTACTTGT 59.927 43.478 0.00 0.00 32.65 3.16
711 777 3.439129 CCCTCCGTTCCAAATTACTTGTC 59.561 47.826 0.00 0.00 32.65 3.18
712 778 4.324267 CCTCCGTTCCAAATTACTTGTCT 58.676 43.478 0.00 0.00 32.65 3.41
713 779 4.760204 CCTCCGTTCCAAATTACTTGTCTT 59.240 41.667 0.00 0.00 32.65 3.01
714 780 5.334879 CCTCCGTTCCAAATTACTTGTCTTG 60.335 44.000 0.00 0.00 32.65 3.02
715 781 5.369833 TCCGTTCCAAATTACTTGTCTTGA 58.630 37.500 0.00 0.00 32.65 3.02
716 782 5.823570 TCCGTTCCAAATTACTTGTCTTGAA 59.176 36.000 0.00 0.00 32.65 2.69
717 783 6.488683 TCCGTTCCAAATTACTTGTCTTGAAT 59.511 34.615 0.00 0.00 32.65 2.57
718 784 7.013846 TCCGTTCCAAATTACTTGTCTTGAATT 59.986 33.333 0.00 0.00 32.65 2.17
719 785 7.651704 CCGTTCCAAATTACTTGTCTTGAATTT 59.348 33.333 0.00 0.00 32.97 1.82
720 786 8.479280 CGTTCCAAATTACTTGTCTTGAATTTG 58.521 33.333 10.52 10.52 43.82 2.32
721 787 9.313118 GTTCCAAATTACTTGTCTTGAATTTGT 57.687 29.630 14.45 0.00 43.18 2.83
722 788 9.528018 TTCCAAATTACTTGTCTTGAATTTGTC 57.472 29.630 14.45 0.00 43.18 3.18
723 789 8.912988 TCCAAATTACTTGTCTTGAATTTGTCT 58.087 29.630 14.45 0.00 43.18 3.41
730 796 8.467402 ACTTGTCTTGAATTTGTCTAGATACG 57.533 34.615 0.00 0.00 39.77 3.06
731 797 7.545965 ACTTGTCTTGAATTTGTCTAGATACGG 59.454 37.037 0.00 0.00 39.77 4.02
732 798 7.165460 TGTCTTGAATTTGTCTAGATACGGA 57.835 36.000 0.00 0.00 39.77 4.69
733 799 7.782049 TGTCTTGAATTTGTCTAGATACGGAT 58.218 34.615 0.00 0.00 39.77 4.18
734 800 7.706607 TGTCTTGAATTTGTCTAGATACGGATG 59.293 37.037 0.00 0.00 39.77 3.51
735 801 7.707035 GTCTTGAATTTGTCTAGATACGGATGT 59.293 37.037 0.00 0.00 39.77 3.06
736 802 8.909923 TCTTGAATTTGTCTAGATACGGATGTA 58.090 33.333 0.00 0.00 33.79 2.29
737 803 9.698309 CTTGAATTTGTCTAGATACGGATGTAT 57.302 33.333 0.00 0.00 43.97 2.29
753 819 8.539770 ACGGATGTATCTAGCATTAAAATGAG 57.460 34.615 6.87 0.00 38.70 2.90
754 820 8.150945 ACGGATGTATCTAGCATTAAAATGAGT 58.849 33.333 6.87 0.00 38.70 3.41
755 821 8.651588 CGGATGTATCTAGCATTAAAATGAGTC 58.348 37.037 6.87 0.00 38.70 3.36
756 822 9.717942 GGATGTATCTAGCATTAAAATGAGTCT 57.282 33.333 6.87 0.00 38.70 3.24
787 853 9.167311 ACATCTGTATTTAGACAAATCCAAGAC 57.833 33.333 0.00 0.00 35.88 3.01
788 854 9.166173 CATCTGTATTTAGACAAATCCAAGACA 57.834 33.333 0.00 0.00 35.88 3.41
789 855 9.739276 ATCTGTATTTAGACAAATCCAAGACAA 57.261 29.630 0.00 0.00 35.88 3.18
790 856 9.219603 TCTGTATTTAGACAAATCCAAGACAAG 57.780 33.333 0.00 0.00 35.88 3.16
791 857 8.918202 TGTATTTAGACAAATCCAAGACAAGT 57.082 30.769 0.00 0.00 35.88 3.16
797 863 7.133891 AGACAAATCCAAGACAAGTAATTCG 57.866 36.000 0.00 0.00 0.00 3.34
798 864 6.149474 AGACAAATCCAAGACAAGTAATTCGG 59.851 38.462 0.00 0.00 0.00 4.30
799 865 6.001460 ACAAATCCAAGACAAGTAATTCGGA 58.999 36.000 0.00 0.00 0.00 4.55
800 866 6.488683 ACAAATCCAAGACAAGTAATTCGGAA 59.511 34.615 0.00 0.00 0.00 4.30
801 867 6.496338 AATCCAAGACAAGTAATTCGGAAC 57.504 37.500 0.00 0.00 0.00 3.62
815 881 2.200052 GGAACGGAGGGAGTACCAG 58.800 63.158 0.00 0.00 43.89 4.00
820 886 2.200081 ACGGAGGGAGTACCAGTACTA 58.800 52.381 10.37 0.00 45.63 1.82
821 887 2.782341 ACGGAGGGAGTACCAGTACTAT 59.218 50.000 10.37 0.66 45.63 2.12
902 974 8.677870 GATGCCTATCCTATTATCTATCCCAT 57.322 38.462 0.00 0.00 0.00 4.00
903 975 8.677870 ATGCCTATCCTATTATCTATCCCATC 57.322 38.462 0.00 0.00 0.00 3.51
904 976 7.019388 TGCCTATCCTATTATCTATCCCATCC 58.981 42.308 0.00 0.00 0.00 3.51
905 977 6.442244 GCCTATCCTATTATCTATCCCATCCC 59.558 46.154 0.00 0.00 0.00 3.85
906 978 7.548241 CCTATCCTATTATCTATCCCATCCCA 58.452 42.308 0.00 0.00 0.00 4.37
907 979 8.189732 CCTATCCTATTATCTATCCCATCCCAT 58.810 40.741 0.00 0.00 0.00 4.00
908 980 9.265862 CTATCCTATTATCTATCCCATCCCATC 57.734 40.741 0.00 0.00 0.00 3.51
909 981 6.393897 TCCTATTATCTATCCCATCCCATCC 58.606 44.000 0.00 0.00 0.00 3.51
910 982 5.549619 CCTATTATCTATCCCATCCCATCCC 59.450 48.000 0.00 0.00 0.00 3.85
911 983 4.450539 TTATCTATCCCATCCCATCCCA 57.549 45.455 0.00 0.00 0.00 4.37
912 984 2.833650 TCTATCCCATCCCATCCCAA 57.166 50.000 0.00 0.00 0.00 4.12
913 985 2.636005 TCTATCCCATCCCATCCCAAG 58.364 52.381 0.00 0.00 0.00 3.61
914 986 2.184339 TCTATCCCATCCCATCCCAAGA 59.816 50.000 0.00 0.00 0.00 3.02
915 987 1.453633 ATCCCATCCCATCCCAAGAG 58.546 55.000 0.00 0.00 0.00 2.85
916 988 0.698886 TCCCATCCCATCCCAAGAGG 60.699 60.000 0.00 0.00 0.00 3.69
1038 1115 1.379176 CGCTCCAGAGACTCCTCCA 60.379 63.158 0.00 0.00 40.30 3.86
1050 1127 0.396811 CTCCTCCACCTCCACGTTTT 59.603 55.000 0.00 0.00 0.00 2.43
1052 1129 2.038033 CTCCTCCACCTCCACGTTTTAA 59.962 50.000 0.00 0.00 0.00 1.52
1055 1132 3.473625 CTCCACCTCCACGTTTTAACTT 58.526 45.455 0.00 0.00 0.00 2.66
1056 1133 3.469739 TCCACCTCCACGTTTTAACTTC 58.530 45.455 0.00 0.00 0.00 3.01
1057 1134 3.118334 TCCACCTCCACGTTTTAACTTCA 60.118 43.478 0.00 0.00 0.00 3.02
1058 1135 3.628487 CCACCTCCACGTTTTAACTTCAA 59.372 43.478 0.00 0.00 0.00 2.69
1062 1143 4.496840 CCTCCACGTTTTAACTTCAACACC 60.497 45.833 0.00 0.00 0.00 4.16
1067 1148 4.033243 ACGTTTTAACTTCAACACCTCGTC 59.967 41.667 0.00 0.00 0.00 4.20
1073 1154 4.059459 CAACACCTCGTCGCGCAC 62.059 66.667 8.75 3.87 0.00 5.34
1106 1188 0.106217 CCTCCTCTCCTCTCCTCCAC 60.106 65.000 0.00 0.00 0.00 4.02
1181 1273 2.703007 CAGGATCCTAAAGACCTCCAGG 59.297 54.545 15.67 0.00 42.17 4.45
1371 1497 1.064389 CCTTGGAGTTGGAGGGGAATC 60.064 57.143 0.00 0.00 0.00 2.52
1385 1511 4.489771 AATCGCTTCCTGCCCCCG 62.490 66.667 0.00 0.00 38.78 5.73
1522 1657 0.253347 TTCCCCTTCCAGATCTGCCT 60.253 55.000 17.76 0.00 0.00 4.75
1547 1682 2.478746 CGCGTTGGGTTGATTCCG 59.521 61.111 0.00 0.00 0.00 4.30
1550 1685 1.209127 CGTTGGGTTGATTCCGTGC 59.791 57.895 0.00 0.00 0.00 5.34
1579 1714 3.423154 CGTGCTTCCCTTGTCGGC 61.423 66.667 0.00 0.00 0.00 5.54
1623 1758 2.126228 CATGCTTGCCGCCTTGTG 60.126 61.111 0.00 0.00 38.05 3.33
1627 1762 3.297620 CTTGCCGCCTTGTGCCTT 61.298 61.111 0.00 0.00 36.24 4.35
1667 1803 4.219846 CGATGCGTGCTGCTGCTC 62.220 66.667 17.00 12.09 46.63 4.26
1673 1809 0.247974 GCGTGCTGCTGCTCTATTTG 60.248 55.000 17.00 1.64 41.73 2.32
1729 1869 1.749063 GGTCGGAATTTGGTGGGATTC 59.251 52.381 0.00 0.00 0.00 2.52
1804 1947 2.711547 GGGGATATTGTTAGGTGGAGCT 59.288 50.000 0.00 0.00 0.00 4.09
1813 1956 2.226962 TAGGTGGAGCTACGGAGTTT 57.773 50.000 0.00 0.00 37.78 2.66
1875 2018 1.778591 GTGTCGGAATTGCGTGTTTTG 59.221 47.619 19.14 0.00 0.00 2.44
1888 2031 0.407528 TGTTTTGGGGCTGCTATCCA 59.592 50.000 0.00 2.71 0.00 3.41
1923 2066 6.691818 CAGTACTAATATTTCTTGCGACGAGT 59.308 38.462 0.00 0.00 0.00 4.18
1949 2092 3.305676 GGGCTTTTCTGCTTCTTTCTTCC 60.306 47.826 0.00 0.00 0.00 3.46
1956 2099 2.481952 CTGCTTCTTTCTTCCTTCACGG 59.518 50.000 0.00 0.00 0.00 4.94
1957 2100 1.197949 GCTTCTTTCTTCCTTCACGGC 59.802 52.381 0.00 0.00 0.00 5.68
1963 2106 0.034896 TCTTCCTTCACGGCCACTTC 59.965 55.000 2.24 0.00 0.00 3.01
1995 2148 9.171877 TGAAAACTTCAAAATTGCAGGTTTAAT 57.828 25.926 8.45 0.00 40.50 1.40
1997 2150 7.495135 AACTTCAAAATTGCAGGTTTAATGG 57.505 32.000 0.33 0.00 0.00 3.16
2020 2173 4.915667 GCGACTGTTCAACCCTAAAATTTC 59.084 41.667 0.00 0.00 0.00 2.17
2055 2209 4.380550 GGGCAGCTTTTGGTTAGTTATCAC 60.381 45.833 0.00 0.00 0.00 3.06
2091 2245 5.716094 TGTAGCTAGCGTTCTTGTTGATAA 58.284 37.500 9.55 0.00 0.00 1.75
2092 2246 6.160684 TGTAGCTAGCGTTCTTGTTGATAAA 58.839 36.000 9.55 0.00 0.00 1.40
2099 2253 4.556699 GCGTTCTTGTTGATAAAGCTGGTT 60.557 41.667 0.00 0.00 0.00 3.67
2100 2254 5.147162 CGTTCTTGTTGATAAAGCTGGTTC 58.853 41.667 0.00 0.00 0.00 3.62
2111 2265 0.107654 AGCTGGTTCCGATTGTAGCC 60.108 55.000 0.00 0.00 31.82 3.93
2118 2272 0.535335 TCCGATTGTAGCCTGGACAC 59.465 55.000 0.00 0.00 0.00 3.67
2199 2353 3.424829 CGCGCTTCATTATTTGTGACTGT 60.425 43.478 5.56 0.00 0.00 3.55
2262 2416 3.432252 CGCTAGTTCTTCATTGGTTCGTT 59.568 43.478 0.00 0.00 0.00 3.85
2263 2417 4.666655 CGCTAGTTCTTCATTGGTTCGTTG 60.667 45.833 0.00 0.00 0.00 4.10
2264 2418 3.626028 AGTTCTTCATTGGTTCGTTGC 57.374 42.857 0.00 0.00 0.00 4.17
2265 2419 3.214328 AGTTCTTCATTGGTTCGTTGCT 58.786 40.909 0.00 0.00 0.00 3.91
2266 2420 4.385825 AGTTCTTCATTGGTTCGTTGCTA 58.614 39.130 0.00 0.00 0.00 3.49
2267 2421 4.819630 AGTTCTTCATTGGTTCGTTGCTAA 59.180 37.500 0.00 0.00 0.00 3.09
2268 2422 5.049405 AGTTCTTCATTGGTTCGTTGCTAAG 60.049 40.000 0.00 0.00 0.00 2.18
2272 2426 4.633175 TCATTGGTTCGTTGCTAAGTACA 58.367 39.130 0.00 0.00 0.00 2.90
2297 2451 9.334693 CAGTAGTAGTTTACTAGTTTTACACGG 57.665 37.037 0.00 0.00 41.69 4.94
2299 2453 9.678941 GTAGTAGTTTACTAGTTTTACACGGTT 57.321 33.333 0.00 0.00 41.59 4.44
2340 2494 6.173427 ACCTTTTCATGCAACCTTTTATGT 57.827 33.333 0.00 0.00 0.00 2.29
2365 2519 7.913297 GTCTGTAGCATAACTTGTTGTGAAAAA 59.087 33.333 13.12 0.00 0.00 1.94
2376 2530 4.677584 TGTTGTGAAAAAGGGAATGTTCG 58.322 39.130 0.00 0.00 0.00 3.95
2379 2533 1.268352 TGAAAAAGGGAATGTTCGGCG 59.732 47.619 0.00 0.00 0.00 6.46
2505 2660 6.589523 GCATGTGTGTGCCTGAATTTTAAATA 59.410 34.615 0.00 0.00 39.18 1.40
2520 2675 9.290483 GAATTTTAAATAGTTGCCTCAAGTAGC 57.710 33.333 0.00 0.00 33.55 3.58
2532 2687 1.472878 TCAAGTAGCTGTGCTAGGTCG 59.527 52.381 0.00 0.00 42.11 4.79
2548 2703 1.129326 GTCGTCAGTTTGTGTCGAGG 58.871 55.000 0.00 0.00 45.43 4.63
2556 2711 0.107831 TTTGTGTCGAGGGGTGGAAG 59.892 55.000 0.00 0.00 0.00 3.46
2611 2766 3.757745 CCGTTTTTAATGGCGTGATCT 57.242 42.857 0.00 0.00 0.00 2.75
2612 2767 3.425404 CCGTTTTTAATGGCGTGATCTG 58.575 45.455 0.00 0.00 0.00 2.90
2644 2799 3.057736 CCCTTTTGTCATCAGCAAGTGAG 60.058 47.826 0.00 0.00 39.07 3.51
2652 2807 2.260844 TCAGCAAGTGAGAAGTTGGG 57.739 50.000 0.00 0.00 0.00 4.12
2685 2840 4.216902 TCACACATGAGCTTTTCAATCCAG 59.783 41.667 0.00 0.00 39.77 3.86
2724 2880 4.559153 CCTGTCCTCGAATGCAAAATTTT 58.441 39.130 0.00 0.00 0.00 1.82
2796 2954 1.795768 GTCTTCTGTTCCGTGCATCA 58.204 50.000 0.00 0.00 0.00 3.07
2799 2957 2.146342 CTTCTGTTCCGTGCATCAACT 58.854 47.619 0.00 0.00 0.00 3.16
2879 3177 7.711772 CCTTGGCAGCATCAAATTTATATTCAA 59.288 33.333 0.00 0.00 0.00 2.69
2897 3195 5.643379 TTCAATCATCTGTTTTGCTACCC 57.357 39.130 0.00 0.00 0.00 3.69
2911 3209 1.408822 GCTACCCCTGAACCTGAATGG 60.409 57.143 0.00 0.00 42.93 3.16
2916 3214 0.392998 CCTGAACCTGAATGGACCGG 60.393 60.000 0.00 0.00 39.71 5.28
2925 3223 3.761752 CCTGAATGGACCGGTGTTAAAAT 59.238 43.478 14.63 0.00 38.35 1.82
2941 3239 7.309194 GGTGTTAAAATGCTCCTTCAGTTATGT 60.309 37.037 0.00 0.00 0.00 2.29
2942 3240 7.538678 GTGTTAAAATGCTCCTTCAGTTATGTG 59.461 37.037 0.00 0.00 0.00 3.21
2943 3241 7.230510 TGTTAAAATGCTCCTTCAGTTATGTGT 59.769 33.333 0.00 0.00 0.00 3.72
2944 3242 8.726988 GTTAAAATGCTCCTTCAGTTATGTGTA 58.273 33.333 0.00 0.00 0.00 2.90
2945 3243 6.743575 AAATGCTCCTTCAGTTATGTGTAC 57.256 37.500 0.00 0.00 0.00 2.90
2946 3244 4.202245 TGCTCCTTCAGTTATGTGTACC 57.798 45.455 0.00 0.00 0.00 3.34
2947 3245 3.580895 TGCTCCTTCAGTTATGTGTACCA 59.419 43.478 0.00 0.00 0.00 3.25
2948 3246 4.184629 GCTCCTTCAGTTATGTGTACCAG 58.815 47.826 0.00 0.00 0.00 4.00
2949 3247 4.322801 GCTCCTTCAGTTATGTGTACCAGT 60.323 45.833 0.00 0.00 0.00 4.00
2950 3248 5.105473 GCTCCTTCAGTTATGTGTACCAGTA 60.105 44.000 0.00 0.00 0.00 2.74
2951 3249 6.407074 GCTCCTTCAGTTATGTGTACCAGTAT 60.407 42.308 0.00 0.00 0.00 2.12
2952 3250 6.873997 TCCTTCAGTTATGTGTACCAGTATG 58.126 40.000 0.00 0.00 0.00 2.39
2953 3251 6.439375 TCCTTCAGTTATGTGTACCAGTATGT 59.561 38.462 0.00 0.00 0.00 2.29
2954 3252 7.038587 TCCTTCAGTTATGTGTACCAGTATGTT 60.039 37.037 0.00 0.00 0.00 2.71
2955 3253 7.606456 CCTTCAGTTATGTGTACCAGTATGTTT 59.394 37.037 0.00 0.00 0.00 2.83
2956 3254 7.899178 TCAGTTATGTGTACCAGTATGTTTG 57.101 36.000 0.00 0.00 0.00 2.93
2957 3255 7.672240 TCAGTTATGTGTACCAGTATGTTTGA 58.328 34.615 0.00 0.00 0.00 2.69
3412 3717 1.555075 GCCCCTATGTGTCAGAGTTCA 59.445 52.381 0.00 0.00 0.00 3.18
4197 4502 1.466025 AAGCTGTTGTGCATGGGTGG 61.466 55.000 0.00 0.00 34.99 4.61
4285 4590 0.960861 GGTTGCTTGGGCTAGTGGTC 60.961 60.000 0.00 0.00 39.59 4.02
4319 4624 2.940147 TGATTTTGTGCCGTGTAATGC 58.060 42.857 0.00 0.00 0.00 3.56
4528 4833 4.072839 GCCTTACCCTGCAGATAATTACC 58.927 47.826 17.39 0.00 0.00 2.85
4562 4867 6.183360 TGTTCATATTTTTCACCTTGGTGCTT 60.183 34.615 14.49 1.14 0.00 3.91
4673 4980 5.751586 AGACTTTTGAAACTTAGGTGACCA 58.248 37.500 3.63 0.00 0.00 4.02
4727 5173 3.278574 TGTGAACAGACTTGAAAGGTGG 58.721 45.455 0.00 0.00 0.00 4.61
4728 5174 3.279434 GTGAACAGACTTGAAAGGTGGT 58.721 45.455 0.00 0.00 0.00 4.16
4739 5185 2.276201 GAAAGGTGGTGTGGCAAAAAC 58.724 47.619 0.00 0.00 0.00 2.43
4746 5192 2.037772 TGGTGTGGCAAAAACAAGTTGT 59.962 40.909 1.64 1.64 0.00 3.32
4778 5224 2.714250 TGGTAACCCTTGGACTGACATT 59.286 45.455 0.00 0.00 0.00 2.71
4807 5253 1.879380 TCGAAATCTTGGTGCTTGGTG 59.121 47.619 0.00 0.00 0.00 4.17
4836 5282 7.308830 GGCTGTATCATCTGTTCAGTTTTTCTT 60.309 37.037 0.00 0.00 0.00 2.52
4907 5353 2.679930 CGGGGTCTTGTAAATGGTCTCC 60.680 54.545 0.00 0.00 0.00 3.71
4908 5354 2.576648 GGGGTCTTGTAAATGGTCTCCT 59.423 50.000 0.00 0.00 0.00 3.69
4909 5355 3.610911 GGGTCTTGTAAATGGTCTCCTG 58.389 50.000 0.00 0.00 0.00 3.86
4910 5356 3.009143 GGGTCTTGTAAATGGTCTCCTGT 59.991 47.826 0.00 0.00 0.00 4.00
4911 5357 4.224370 GGGTCTTGTAAATGGTCTCCTGTA 59.776 45.833 0.00 0.00 0.00 2.74
4912 5358 5.280317 GGGTCTTGTAAATGGTCTCCTGTAA 60.280 44.000 0.00 0.00 0.00 2.41
4913 5359 6.235664 GGTCTTGTAAATGGTCTCCTGTAAA 58.764 40.000 0.00 0.00 0.00 2.01
4914 5360 6.371825 GGTCTTGTAAATGGTCTCCTGTAAAG 59.628 42.308 0.00 0.00 0.00 1.85
4915 5361 6.371825 GTCTTGTAAATGGTCTCCTGTAAAGG 59.628 42.308 0.00 0.00 0.00 3.11
4916 5362 5.174037 TGTAAATGGTCTCCTGTAAAGGG 57.826 43.478 0.00 0.00 0.00 3.95
4918 5364 4.302559 AAATGGTCTCCTGTAAAGGGTC 57.697 45.455 0.00 0.00 0.00 4.46
4919 5365 2.715763 TGGTCTCCTGTAAAGGGTCT 57.284 50.000 0.00 0.00 0.00 3.85
4920 5366 2.986050 TGGTCTCCTGTAAAGGGTCTT 58.014 47.619 0.00 0.00 0.00 3.01
4921 5367 2.637872 TGGTCTCCTGTAAAGGGTCTTG 59.362 50.000 0.00 0.00 0.00 3.02
4922 5368 2.904434 GGTCTCCTGTAAAGGGTCTTGA 59.096 50.000 0.00 0.00 0.00 3.02
4923 5369 3.326880 GGTCTCCTGTAAAGGGTCTTGAA 59.673 47.826 0.00 0.00 0.00 2.69
4924 5370 4.563786 GGTCTCCTGTAAAGGGTCTTGAAG 60.564 50.000 0.00 0.00 0.00 3.02
4925 5371 3.583086 TCTCCTGTAAAGGGTCTTGAAGG 59.417 47.826 0.00 0.00 0.00 3.46
4926 5372 3.323775 TCCTGTAAAGGGTCTTGAAGGT 58.676 45.455 0.00 0.00 0.00 3.50
4927 5373 3.720002 TCCTGTAAAGGGTCTTGAAGGTT 59.280 43.478 0.00 0.00 0.00 3.50
4928 5374 4.072839 CCTGTAAAGGGTCTTGAAGGTTC 58.927 47.826 0.00 0.00 0.00 3.62
4929 5375 4.202472 CCTGTAAAGGGTCTTGAAGGTTCT 60.202 45.833 0.00 0.00 0.00 3.01
4930 5376 4.969484 TGTAAAGGGTCTTGAAGGTTCTC 58.031 43.478 0.00 0.00 0.00 2.87
4948 5394 1.532868 CTCGCTGAACAAACCTCCTTG 59.467 52.381 0.00 0.00 0.00 3.61
5054 5500 1.654220 GTTGTGCTGGAATGTGCGT 59.346 52.632 0.00 0.00 0.00 5.24
5108 5554 3.513515 TGTTTGGCCTTTTTCTGTTCTGT 59.486 39.130 3.32 0.00 0.00 3.41
5118 5564 9.529325 GCCTTTTTCTGTTCTGTAGTTTAAAAT 57.471 29.630 0.00 0.00 0.00 1.82
5164 5610 3.386768 ACGAGTTGTGTTCAGTAGCAT 57.613 42.857 0.00 0.00 0.00 3.79
5184 5630 5.189539 AGCATGGGTTTTTGCACCTTTATAT 59.810 36.000 0.00 0.00 41.35 0.86
5186 5632 6.638610 CATGGGTTTTTGCACCTTTATATCA 58.361 36.000 0.00 0.00 36.97 2.15
5187 5633 6.031751 TGGGTTTTTGCACCTTTATATCAC 57.968 37.500 0.00 0.00 36.97 3.06
5369 5831 6.295719 ACCAAAATGTCAGGTAGTAGTAGG 57.704 41.667 0.00 0.00 32.92 3.18
5384 5846 7.656542 GGTAGTAGTAGGTTAAAGAATGATGGC 59.343 40.741 0.00 0.00 0.00 4.40
5390 5852 1.013596 TAAAGAATGATGGCGCACCG 58.986 50.000 10.83 0.00 39.70 4.94
5394 5856 0.512952 GAATGATGGCGCACCGTATC 59.487 55.000 10.83 5.35 39.70 2.24
5409 5871 5.053811 CACCGTATCCTAATTGTGCATGTA 58.946 41.667 0.00 0.00 0.00 2.29
5418 5880 4.355543 AATTGTGCATGTAGTTTAGGCG 57.644 40.909 0.00 0.00 0.00 5.52
5440 5902 5.277058 GCGTCTATTAACCTGCTGATCTTTG 60.277 44.000 0.00 0.00 0.00 2.77
5485 5947 4.136796 GCAATTGTATCACCATCTGCCTA 58.863 43.478 7.40 0.00 0.00 3.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 53 2.182537 GTCGGGATGGTTACGCGT 59.817 61.111 19.17 19.17 42.58 6.01
123 125 1.134280 CAAGCGATTCTGGGATGGACT 60.134 52.381 0.00 0.00 0.00 3.85
124 126 1.303309 CAAGCGATTCTGGGATGGAC 58.697 55.000 0.00 0.00 0.00 4.02
177 180 1.106285 ATTTTCTGCGGGCATCTTCC 58.894 50.000 0.00 0.00 0.00 3.46
203 206 4.141883 CGCAAGTGCAGTGCAATC 57.858 55.556 21.67 8.67 41.47 2.67
226 234 0.456142 CTCGAACCGCATCGTCTTCA 60.456 55.000 7.76 0.00 43.19 3.02
258 266 2.398554 CCAACCGGGCAGTTCATCG 61.399 63.158 6.32 0.00 0.00 3.84
286 304 3.480470 AGATTATCCAATTCCTGGCGTG 58.520 45.455 0.00 0.00 45.98 5.34
343 370 1.012086 TCGATCATCTGCTTGCTTGC 58.988 50.000 0.00 0.00 0.00 4.01
347 374 1.263484 CATGGTCGATCATCTGCTTGC 59.737 52.381 8.58 0.00 0.00 4.01
350 377 1.758862 TCACATGGTCGATCATCTGCT 59.241 47.619 8.58 0.00 0.00 4.24
352 379 2.363359 TCCTCACATGGTCGATCATCTG 59.637 50.000 8.58 7.99 0.00 2.90
363 390 4.605640 ATTGGTTTGTTTCCTCACATGG 57.394 40.909 0.00 0.00 0.00 3.66
376 403 1.411394 CACGAGCTGCAATTGGTTTG 58.589 50.000 7.72 0.00 38.43 2.93
380 407 0.169672 CTTCCACGAGCTGCAATTGG 59.830 55.000 7.72 4.73 0.00 3.16
387 414 1.817099 GATGCCCTTCCACGAGCTG 60.817 63.158 0.00 0.00 0.00 4.24
389 416 1.817099 CAGATGCCCTTCCACGAGC 60.817 63.158 0.00 0.00 0.00 5.03
390 417 1.817099 GCAGATGCCCTTCCACGAG 60.817 63.158 0.00 0.00 34.31 4.18
391 418 2.268920 GCAGATGCCCTTCCACGA 59.731 61.111 0.00 0.00 34.31 4.35
410 437 1.528309 GCCACGGGTAATCATGGGG 60.528 63.158 0.00 0.00 32.49 4.96
463 512 4.038042 CAGCTCATCGTATTTCCCTGACTA 59.962 45.833 0.00 0.00 0.00 2.59
464 513 3.034635 AGCTCATCGTATTTCCCTGACT 58.965 45.455 0.00 0.00 0.00 3.41
465 514 3.126831 CAGCTCATCGTATTTCCCTGAC 58.873 50.000 0.00 0.00 0.00 3.51
466 515 2.103094 CCAGCTCATCGTATTTCCCTGA 59.897 50.000 0.00 0.00 0.00 3.86
467 516 2.103094 TCCAGCTCATCGTATTTCCCTG 59.897 50.000 0.00 0.00 0.00 4.45
490 539 6.390048 AGAATCTGGATATGATTGGCATCT 57.610 37.500 0.00 0.00 38.44 2.90
504 553 2.857483 TGGTTGCGAAAAGAATCTGGA 58.143 42.857 0.00 0.00 0.00 3.86
507 556 3.820467 TGACATGGTTGCGAAAAGAATCT 59.180 39.130 0.00 0.00 0.00 2.40
517 569 1.289276 TCATCGATGACATGGTTGCG 58.711 50.000 23.99 0.00 0.00 4.85
550 606 4.657814 TTCTTGGTGGAGGAAAGCTTAT 57.342 40.909 0.00 0.00 0.00 1.73
551 607 4.398319 CTTTCTTGGTGGAGGAAAGCTTA 58.602 43.478 0.00 0.00 39.24 3.09
552 608 3.225940 CTTTCTTGGTGGAGGAAAGCTT 58.774 45.455 0.00 0.00 39.24 3.74
553 609 2.868899 CTTTCTTGGTGGAGGAAAGCT 58.131 47.619 0.00 0.00 39.24 3.74
579 635 2.987413 TGTTGCAGTTCATAAAGCCG 57.013 45.000 0.00 0.00 0.00 5.52
619 685 4.864704 TTAGTGGTTTCCATTTCTTGCC 57.135 40.909 0.00 0.00 35.28 4.52
620 686 5.596845 TGTTTAGTGGTTTCCATTTCTTGC 58.403 37.500 0.00 0.00 35.28 4.01
654 720 8.966155 TTCCCCCAAGTTTTATAGAAGAAATT 57.034 30.769 0.00 0.00 0.00 1.82
655 721 8.966155 TTTCCCCCAAGTTTTATAGAAGAAAT 57.034 30.769 0.00 0.00 0.00 2.17
656 722 8.644216 GTTTTCCCCCAAGTTTTATAGAAGAAA 58.356 33.333 0.00 0.00 0.00 2.52
657 723 7.785506 TGTTTTCCCCCAAGTTTTATAGAAGAA 59.214 33.333 0.00 0.00 0.00 2.52
659 725 7.232737 ACTGTTTTCCCCCAAGTTTTATAGAAG 59.767 37.037 0.00 0.00 0.00 2.85
667 733 4.212716 GAGTACTGTTTTCCCCCAAGTTT 58.787 43.478 0.00 0.00 0.00 2.66
671 737 1.426215 GGGAGTACTGTTTTCCCCCAA 59.574 52.381 14.97 0.00 43.98 4.12
672 738 1.069775 GGGAGTACTGTTTTCCCCCA 58.930 55.000 14.97 0.00 43.98 4.96
682 748 1.263356 TTGGAACGGAGGGAGTACTG 58.737 55.000 0.00 0.00 0.00 2.74
689 755 3.418047 ACAAGTAATTTGGAACGGAGGG 58.582 45.455 0.00 0.00 41.25 4.30
693 759 5.682943 TCAAGACAAGTAATTTGGAACGG 57.317 39.130 0.00 0.00 41.25 4.44
694 760 8.479280 CAAATTCAAGACAAGTAATTTGGAACG 58.521 33.333 10.17 0.00 41.93 3.95
695 761 9.313118 ACAAATTCAAGACAAGTAATTTGGAAC 57.687 29.630 18.33 0.00 46.31 3.62
696 762 9.528018 GACAAATTCAAGACAAGTAATTTGGAA 57.472 29.630 18.33 0.00 46.31 3.53
697 763 8.912988 AGACAAATTCAAGACAAGTAATTTGGA 58.087 29.630 18.33 1.48 46.31 3.53
704 770 9.569167 CGTATCTAGACAAATTCAAGACAAGTA 57.431 33.333 0.00 0.00 0.00 2.24
705 771 7.545965 CCGTATCTAGACAAATTCAAGACAAGT 59.454 37.037 0.00 0.00 0.00 3.16
706 772 7.759886 TCCGTATCTAGACAAATTCAAGACAAG 59.240 37.037 0.00 0.00 0.00 3.16
707 773 7.608153 TCCGTATCTAGACAAATTCAAGACAA 58.392 34.615 0.00 0.00 0.00 3.18
708 774 7.165460 TCCGTATCTAGACAAATTCAAGACA 57.835 36.000 0.00 0.00 0.00 3.41
709 775 7.707035 ACATCCGTATCTAGACAAATTCAAGAC 59.293 37.037 0.00 0.00 0.00 3.01
710 776 7.782049 ACATCCGTATCTAGACAAATTCAAGA 58.218 34.615 0.00 0.00 0.00 3.02
711 777 9.698309 ATACATCCGTATCTAGACAAATTCAAG 57.302 33.333 0.00 0.00 32.66 3.02
727 793 9.639601 CTCATTTTAATGCTAGATACATCCGTA 57.360 33.333 0.00 0.00 36.36 4.02
728 794 8.150945 ACTCATTTTAATGCTAGATACATCCGT 58.849 33.333 0.00 0.00 36.36 4.69
729 795 8.539770 ACTCATTTTAATGCTAGATACATCCG 57.460 34.615 0.00 0.00 36.36 4.18
730 796 9.717942 AGACTCATTTTAATGCTAGATACATCC 57.282 33.333 0.00 0.00 36.36 3.51
761 827 9.167311 GTCTTGGATTTGTCTAAATACAGATGT 57.833 33.333 0.00 0.00 45.38 3.06
762 828 9.166173 TGTCTTGGATTTGTCTAAATACAGATG 57.834 33.333 0.00 0.00 45.38 2.90
763 829 9.739276 TTGTCTTGGATTTGTCTAAATACAGAT 57.261 29.630 0.00 0.00 45.38 2.90
764 830 9.219603 CTTGTCTTGGATTTGTCTAAATACAGA 57.780 33.333 0.00 0.00 45.38 3.41
765 831 9.003658 ACTTGTCTTGGATTTGTCTAAATACAG 57.996 33.333 0.00 0.00 45.38 2.74
766 832 8.918202 ACTTGTCTTGGATTTGTCTAAATACA 57.082 30.769 0.00 0.00 43.65 2.29
771 837 8.717821 CGAATTACTTGTCTTGGATTTGTCTAA 58.282 33.333 0.00 0.00 0.00 2.10
772 838 7.333423 CCGAATTACTTGTCTTGGATTTGTCTA 59.667 37.037 0.00 0.00 0.00 2.59
773 839 6.149474 CCGAATTACTTGTCTTGGATTTGTCT 59.851 38.462 0.00 0.00 0.00 3.41
774 840 6.148811 TCCGAATTACTTGTCTTGGATTTGTC 59.851 38.462 0.00 0.00 0.00 3.18
775 841 6.001460 TCCGAATTACTTGTCTTGGATTTGT 58.999 36.000 0.00 0.00 0.00 2.83
776 842 6.494893 TCCGAATTACTTGTCTTGGATTTG 57.505 37.500 0.00 0.00 0.00 2.32
777 843 6.348213 CGTTCCGAATTACTTGTCTTGGATTT 60.348 38.462 0.00 0.00 0.00 2.17
778 844 5.121768 CGTTCCGAATTACTTGTCTTGGATT 59.878 40.000 0.00 0.00 0.00 3.01
779 845 4.630069 CGTTCCGAATTACTTGTCTTGGAT 59.370 41.667 0.00 0.00 0.00 3.41
780 846 3.991773 CGTTCCGAATTACTTGTCTTGGA 59.008 43.478 0.00 0.00 0.00 3.53
781 847 3.124636 CCGTTCCGAATTACTTGTCTTGG 59.875 47.826 0.00 0.00 0.00 3.61
782 848 3.991773 TCCGTTCCGAATTACTTGTCTTG 59.008 43.478 0.00 0.00 0.00 3.02
783 849 4.243270 CTCCGTTCCGAATTACTTGTCTT 58.757 43.478 0.00 0.00 0.00 3.01
784 850 3.368116 CCTCCGTTCCGAATTACTTGTCT 60.368 47.826 0.00 0.00 0.00 3.41
785 851 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
786 852 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
787 853 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
788 854 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
789 855 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
790 856 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
791 857 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
792 858 1.479730 GTACTCCCTCCGTTCCGAATT 59.520 52.381 0.00 0.00 0.00 2.17
793 859 1.109609 GTACTCCCTCCGTTCCGAAT 58.890 55.000 0.00 0.00 0.00 3.34
794 860 0.967380 GGTACTCCCTCCGTTCCGAA 60.967 60.000 0.00 0.00 0.00 4.30
795 861 1.379044 GGTACTCCCTCCGTTCCGA 60.379 63.158 0.00 0.00 0.00 4.55
796 862 1.664321 CTGGTACTCCCTCCGTTCCG 61.664 65.000 0.00 0.00 0.00 4.30
797 863 0.614134 ACTGGTACTCCCTCCGTTCC 60.614 60.000 0.00 0.00 0.00 3.62
798 864 1.747924 GTACTGGTACTCCCTCCGTTC 59.252 57.143 3.89 0.00 33.45 3.95
799 865 1.357079 AGTACTGGTACTCCCTCCGTT 59.643 52.381 7.51 0.00 42.30 4.44
800 866 0.998145 AGTACTGGTACTCCCTCCGT 59.002 55.000 7.51 0.00 42.30 4.69
801 867 3.505480 ATAGTACTGGTACTCCCTCCG 57.495 52.381 15.50 0.00 44.58 4.63
802 868 5.951204 AGTAATAGTACTGGTACTCCCTCC 58.049 45.833 15.50 3.90 44.58 4.30
803 869 7.744733 ACTAGTAATAGTACTGGTACTCCCTC 58.255 42.308 16.47 7.13 46.79 4.30
804 870 7.704359 ACTAGTAATAGTACTGGTACTCCCT 57.296 40.000 16.47 10.22 46.79 4.20
820 886 7.360946 GCCGATCTCACAAACAAAACTAGTAAT 60.361 37.037 0.00 0.00 0.00 1.89
821 887 6.073440 GCCGATCTCACAAACAAAACTAGTAA 60.073 38.462 0.00 0.00 0.00 2.24
895 967 2.636005 CTCTTGGGATGGGATGGGATA 58.364 52.381 0.00 0.00 0.00 2.59
896 968 1.453633 CTCTTGGGATGGGATGGGAT 58.546 55.000 0.00 0.00 0.00 3.85
897 969 0.698886 CCTCTTGGGATGGGATGGGA 60.699 60.000 0.00 0.00 37.23 4.37
898 970 0.698886 TCCTCTTGGGATGGGATGGG 60.699 60.000 0.00 0.00 39.58 4.00
899 971 1.144503 CTTCCTCTTGGGATGGGATGG 59.855 57.143 0.00 0.00 44.66 3.51
900 972 2.106166 CTCTTCCTCTTGGGATGGGATG 59.894 54.545 0.00 0.00 44.66 3.51
901 973 2.416638 CTCTTCCTCTTGGGATGGGAT 58.583 52.381 0.00 0.00 44.66 3.85
902 974 1.626350 CCTCTTCCTCTTGGGATGGGA 60.626 57.143 0.00 0.00 44.66 4.37
903 975 0.842635 CCTCTTCCTCTTGGGATGGG 59.157 60.000 0.00 0.00 44.66 4.00
904 976 1.885049 TCCTCTTCCTCTTGGGATGG 58.115 55.000 0.00 0.00 44.66 3.51
905 977 3.110705 TCTTCCTCTTCCTCTTGGGATG 58.889 50.000 0.00 0.00 44.66 3.51
906 978 3.383223 CTCTTCCTCTTCCTCTTGGGAT 58.617 50.000 0.00 0.00 44.66 3.85
907 979 2.560841 CCTCTTCCTCTTCCTCTTGGGA 60.561 54.545 0.00 0.00 43.41 4.37
908 980 1.836802 CCTCTTCCTCTTCCTCTTGGG 59.163 57.143 0.00 0.00 0.00 4.12
909 981 2.826488 TCCTCTTCCTCTTCCTCTTGG 58.174 52.381 0.00 0.00 0.00 3.61
910 982 3.580458 TGTTCCTCTTCCTCTTCCTCTTG 59.420 47.826 0.00 0.00 0.00 3.02
911 983 3.863086 TGTTCCTCTTCCTCTTCCTCTT 58.137 45.455 0.00 0.00 0.00 2.85
912 984 3.551635 TGTTCCTCTTCCTCTTCCTCT 57.448 47.619 0.00 0.00 0.00 3.69
913 985 4.019771 ACAATGTTCCTCTTCCTCTTCCTC 60.020 45.833 0.00 0.00 0.00 3.71
914 986 3.913163 ACAATGTTCCTCTTCCTCTTCCT 59.087 43.478 0.00 0.00 0.00 3.36
915 987 4.006319 CACAATGTTCCTCTTCCTCTTCC 58.994 47.826 0.00 0.00 0.00 3.46
916 988 3.438434 GCACAATGTTCCTCTTCCTCTTC 59.562 47.826 0.00 0.00 0.00 2.87
1030 1107 0.763223 AAACGTGGAGGTGGAGGAGT 60.763 55.000 0.00 0.00 0.00 3.85
1038 1115 4.095334 GTGTTGAAGTTAAAACGTGGAGGT 59.905 41.667 0.00 0.00 0.00 3.85
1050 1127 1.774639 GCGACGAGGTGTTGAAGTTA 58.225 50.000 0.00 0.00 33.36 2.24
1052 1129 1.660575 CGCGACGAGGTGTTGAAGT 60.661 57.895 0.00 0.00 33.36 3.01
1055 1132 4.273257 TGCGCGACGAGGTGTTGA 62.273 61.111 12.10 0.00 33.36 3.18
1056 1133 4.059459 GTGCGCGACGAGGTGTTG 62.059 66.667 12.10 0.00 34.83 3.33
1073 1154 0.466963 AGGAGGGTAATTTACGGGCG 59.533 55.000 0.64 0.00 0.00 6.13
1074 1155 1.767088 AGAGGAGGGTAATTTACGGGC 59.233 52.381 0.64 0.00 0.00 6.13
1075 1156 2.367894 GGAGAGGAGGGTAATTTACGGG 59.632 54.545 0.64 0.00 0.00 5.28
1077 1158 4.216708 AGAGGAGAGGAGGGTAATTTACG 58.783 47.826 0.64 0.00 0.00 3.18
1078 1159 4.589798 GGAGAGGAGAGGAGGGTAATTTAC 59.410 50.000 0.00 0.00 0.00 2.01
1079 1160 4.486529 AGGAGAGGAGAGGAGGGTAATTTA 59.513 45.833 0.00 0.00 0.00 1.40
1349 1475 2.045926 CCCTCCAACTCCAAGGCG 60.046 66.667 0.00 0.00 0.00 5.52
1386 1512 4.437587 CCAGAGCAGGCAAGGGGG 62.438 72.222 0.00 0.00 0.00 5.40
1522 1657 4.612412 ACCCAACGCGGCGAAGAA 62.612 61.111 30.94 0.00 0.00 2.52
1623 1758 1.084370 CACGAGGACCGAATCAAGGC 61.084 60.000 0.00 0.00 41.76 4.35
1627 1762 2.577059 GGCACGAGGACCGAATCA 59.423 61.111 0.00 0.00 41.76 2.57
1682 1818 1.394917 CCAACAGAAAATCGGAGCTCG 59.605 52.381 7.83 3.33 40.90 5.03
1683 1819 1.740025 CCCAACAGAAAATCGGAGCTC 59.260 52.381 4.71 4.71 0.00 4.09
1684 1820 1.351017 TCCCAACAGAAAATCGGAGCT 59.649 47.619 0.00 0.00 0.00 4.09
1729 1869 2.837291 CCTCCCTCCTCTGCTCCG 60.837 72.222 0.00 0.00 0.00 4.63
1804 1947 2.094390 CGTGAGGAATCCAAACTCCGTA 60.094 50.000 0.61 0.00 36.78 4.02
1813 1956 1.885887 CAAAAAGGCGTGAGGAATCCA 59.114 47.619 0.61 0.00 0.00 3.41
1875 2018 1.453928 GGTTGTGGATAGCAGCCCC 60.454 63.158 0.00 0.00 32.10 5.80
1888 2031 4.748277 ATATTAGTACTGCCACGGTTGT 57.252 40.909 5.39 0.00 0.00 3.32
1923 2066 1.372501 AGAAGCAGAAAAGCCCCCTA 58.627 50.000 0.00 0.00 34.23 3.53
1949 2092 1.302033 AGCAGAAGTGGCCGTGAAG 60.302 57.895 0.00 0.00 0.00 3.02
1956 2099 1.678101 AGTTTTCACAGCAGAAGTGGC 59.322 47.619 0.00 0.00 37.58 5.01
1957 2100 3.378112 TGAAGTTTTCACAGCAGAAGTGG 59.622 43.478 0.00 0.00 37.58 4.00
1963 2106 5.063691 TGCAATTTTGAAGTTTTCACAGCAG 59.936 36.000 0.00 0.00 39.87 4.24
1995 2148 0.759959 TTAGGGTTGAACAGTCGCCA 59.240 50.000 0.00 0.00 0.00 5.69
1997 2150 4.499037 AATTTTAGGGTTGAACAGTCGC 57.501 40.909 0.00 0.00 0.00 5.19
2020 2173 1.749258 GCTGCCCCTTTCCCTAACG 60.749 63.158 0.00 0.00 0.00 3.18
2055 2209 3.188873 GCTAGCTACAGACATACCGGTAG 59.811 52.174 20.91 14.04 37.01 3.18
2091 2245 1.679032 GGCTACAATCGGAACCAGCTT 60.679 52.381 0.00 0.00 0.00 3.74
2092 2246 0.107654 GGCTACAATCGGAACCAGCT 60.108 55.000 0.00 0.00 0.00 4.24
2099 2253 0.535335 GTGTCCAGGCTACAATCGGA 59.465 55.000 0.00 0.00 0.00 4.55
2100 2254 0.537188 AGTGTCCAGGCTACAATCGG 59.463 55.000 0.00 0.00 0.00 4.18
2111 2265 2.558359 GGTGGGAAATCAAAGTGTCCAG 59.442 50.000 0.00 0.00 31.30 3.86
2118 2272 1.826385 AGAGCGGTGGGAAATCAAAG 58.174 50.000 0.00 0.00 0.00 2.77
2162 2316 1.135315 CGCGAGGTTGGCAAGATTG 59.865 57.895 0.00 0.00 0.00 2.67
2199 2353 6.072175 CGAATCCAAAAGGATAAGGACAACAA 60.072 38.462 0.00 0.00 32.04 2.83
2262 2416 9.950496 ACTAGTAAACTACTACTGTACTTAGCA 57.050 33.333 0.00 0.00 40.14 3.49
2272 2426 9.067986 ACCGTGTAAAACTAGTAAACTACTACT 57.932 33.333 0.00 0.00 40.14 2.57
2297 2451 3.321497 GTCATCAGAGACTGACCACAAC 58.679 50.000 3.54 0.00 43.63 3.32
2309 2463 4.380233 GGTTGCATGAAAAGGTCATCAGAG 60.380 45.833 0.00 0.00 44.01 3.35
2340 2494 7.561021 TTTTCACAACAAGTTATGCTACAGA 57.439 32.000 0.00 0.00 0.00 3.41
2365 2519 1.079127 CAGTCGCCGAACATTCCCT 60.079 57.895 0.00 0.00 0.00 4.20
2376 2530 2.747855 CCTCCCAAAGCAGTCGCC 60.748 66.667 0.00 0.00 39.83 5.54
2379 2533 4.103311 AGGATATAACCTCCCAAAGCAGTC 59.897 45.833 0.00 0.00 34.98 3.51
2480 2635 2.443887 AAATTCAGGCACACACATGC 57.556 45.000 0.00 0.00 45.34 4.06
2505 2660 4.197178 AGCACAGCTACTTGAGGCAACT 62.197 50.000 0.00 0.00 45.68 3.16
2520 2675 2.061773 CAAACTGACGACCTAGCACAG 58.938 52.381 0.00 0.00 35.14 3.66
2532 2687 0.106149 ACCCCTCGACACAAACTGAC 59.894 55.000 0.00 0.00 0.00 3.51
2548 2703 1.302832 CACCAGAGCACTTCCACCC 60.303 63.158 0.00 0.00 0.00 4.61
2556 2711 2.028930 ACTTACTACAGCACCAGAGCAC 60.029 50.000 0.00 0.00 36.85 4.40
2611 2766 4.171878 TGACAAAAGGGTGTTACCATCA 57.828 40.909 0.00 0.00 41.02 3.07
2612 2767 4.764823 TGATGACAAAAGGGTGTTACCATC 59.235 41.667 0.00 0.00 41.02 3.51
2644 2799 3.003480 GTGAGCACAGATACCCAACTTC 58.997 50.000 0.00 0.00 0.00 3.01
2724 2880 9.162764 GGCAACAGACTAAATTACTGAATTAGA 57.837 33.333 0.00 0.00 34.01 2.10
2796 2954 3.258622 GGTCTACTGTCCTGCAACTAGTT 59.741 47.826 1.12 1.12 0.00 2.24
2799 2957 2.826128 CAGGTCTACTGTCCTGCAACTA 59.174 50.000 1.58 0.00 41.20 2.24
2879 3177 3.266772 TCAGGGGTAGCAAAACAGATGAT 59.733 43.478 0.00 0.00 0.00 2.45
2897 3195 0.392998 CCGGTCCATTCAGGTTCAGG 60.393 60.000 0.00 0.00 39.02 3.86
2911 3209 2.433436 AGGAGCATTTTAACACCGGTC 58.567 47.619 2.59 0.00 0.00 4.79
2916 3214 7.538678 CACATAACTGAAGGAGCATTTTAACAC 59.461 37.037 0.00 0.00 0.00 3.32
2925 3223 3.580895 TGGTACACATAACTGAAGGAGCA 59.419 43.478 0.00 0.00 0.00 4.26
2941 3239 6.014070 ACTGGTACATCAAACATACTGGTACA 60.014 38.462 0.00 0.00 38.20 2.90
2942 3240 6.403878 ACTGGTACATCAAACATACTGGTAC 58.596 40.000 0.00 0.00 38.20 3.34
2943 3241 6.614694 ACTGGTACATCAAACATACTGGTA 57.385 37.500 0.00 0.00 38.20 3.25
2944 3242 5.499004 ACTGGTACATCAAACATACTGGT 57.501 39.130 0.00 0.00 38.20 4.00
2945 3243 7.047891 ACATACTGGTACATCAAACATACTGG 58.952 38.462 0.00 0.00 38.20 4.00
2946 3244 7.763985 TGACATACTGGTACATCAAACATACTG 59.236 37.037 0.00 0.00 38.20 2.74
2947 3245 7.847096 TGACATACTGGTACATCAAACATACT 58.153 34.615 0.00 0.00 38.20 2.12
2948 3246 8.487313 TTGACATACTGGTACATCAAACATAC 57.513 34.615 0.00 0.00 38.20 2.39
2949 3247 9.108284 CATTGACATACTGGTACATCAAACATA 57.892 33.333 10.51 0.00 38.20 2.29
2950 3248 7.415541 GCATTGACATACTGGTACATCAAACAT 60.416 37.037 10.51 0.00 38.20 2.71
2951 3249 6.128035 GCATTGACATACTGGTACATCAAACA 60.128 38.462 10.51 0.00 38.20 2.83
2952 3250 6.258160 GCATTGACATACTGGTACATCAAAC 58.742 40.000 10.51 5.34 38.20 2.93
2953 3251 5.356751 GGCATTGACATACTGGTACATCAAA 59.643 40.000 10.51 0.25 38.20 2.69
2954 3252 4.881273 GGCATTGACATACTGGTACATCAA 59.119 41.667 0.00 9.46 38.20 2.57
2955 3253 4.164030 AGGCATTGACATACTGGTACATCA 59.836 41.667 0.00 0.00 38.20 3.07
2956 3254 4.512944 CAGGCATTGACATACTGGTACATC 59.487 45.833 0.00 0.00 38.20 3.06
2957 3255 4.454678 CAGGCATTGACATACTGGTACAT 58.545 43.478 0.00 0.00 38.20 2.29
3412 3717 0.820871 GAGTTGGACTCGAGCAGGAT 59.179 55.000 13.61 0.00 35.28 3.24
4119 4424 1.413077 CAGTTCCCGGGGAGAAGATAC 59.587 57.143 23.50 10.49 31.21 2.24
4197 4502 0.957395 TCAAGCAGCTTAGGCAGTGC 60.957 55.000 7.52 6.55 41.70 4.40
4285 4590 5.119588 GCACAAAATCATGAACTTGTCCATG 59.880 40.000 18.16 11.16 40.97 3.66
4319 4624 4.201657 TGCTGTCATATCCTCCAATGTTG 58.798 43.478 0.00 0.00 0.00 3.33
4528 4833 8.192774 AGGTGAAAAATATGAACACATGCATAG 58.807 33.333 0.00 0.00 33.82 2.23
4562 4867 3.430098 GGTGCCATCAACACAAGAAACAA 60.430 43.478 0.00 0.00 39.87 2.83
4673 4980 3.804759 GCAGAAGTTGTACTTACCCGGTT 60.805 47.826 0.00 0.00 38.80 4.44
4727 5173 3.862845 CCTACAACTTGTTTTTGCCACAC 59.137 43.478 0.00 0.00 0.00 3.82
4728 5174 3.118956 CCCTACAACTTGTTTTTGCCACA 60.119 43.478 0.00 0.00 0.00 4.17
4739 5185 3.496331 ACCAACATTCCCCTACAACTTG 58.504 45.455 0.00 0.00 0.00 3.16
4746 5192 2.937442 AGGGTTACCAACATTCCCCTA 58.063 47.619 2.98 0.00 40.68 3.53
4778 5224 3.501828 CACCAAGATTTCGACATGTCCAA 59.498 43.478 20.03 11.18 0.00 3.53
4807 5253 4.701765 ACTGAACAGATGATACAGCCATC 58.298 43.478 8.87 0.00 40.40 3.51
4836 5282 2.048601 GGGCAGGAAAACATGCACA 58.951 52.632 8.91 0.00 45.36 4.57
4907 5353 4.974399 AGAACCTTCAAGACCCTTTACAG 58.026 43.478 0.00 0.00 0.00 2.74
4908 5354 4.502604 CGAGAACCTTCAAGACCCTTTACA 60.503 45.833 0.00 0.00 0.00 2.41
4909 5355 3.995048 CGAGAACCTTCAAGACCCTTTAC 59.005 47.826 0.00 0.00 0.00 2.01
4910 5356 3.556423 GCGAGAACCTTCAAGACCCTTTA 60.556 47.826 0.00 0.00 0.00 1.85
4911 5357 2.810767 GCGAGAACCTTCAAGACCCTTT 60.811 50.000 0.00 0.00 0.00 3.11
4912 5358 1.270893 GCGAGAACCTTCAAGACCCTT 60.271 52.381 0.00 0.00 0.00 3.95
4913 5359 0.321996 GCGAGAACCTTCAAGACCCT 59.678 55.000 0.00 0.00 0.00 4.34
4914 5360 0.321996 AGCGAGAACCTTCAAGACCC 59.678 55.000 0.00 0.00 0.00 4.46
4915 5361 1.000955 TCAGCGAGAACCTTCAAGACC 59.999 52.381 0.00 0.00 0.00 3.85
4916 5362 2.440539 TCAGCGAGAACCTTCAAGAC 57.559 50.000 0.00 0.00 0.00 3.01
4926 5372 1.416401 AGGAGGTTTGTTCAGCGAGAA 59.584 47.619 0.00 0.00 0.00 2.87
4927 5373 1.048601 AGGAGGTTTGTTCAGCGAGA 58.951 50.000 0.00 0.00 0.00 4.04
4928 5374 1.532868 CAAGGAGGTTTGTTCAGCGAG 59.467 52.381 0.00 0.00 0.00 5.03
4929 5375 1.140052 TCAAGGAGGTTTGTTCAGCGA 59.860 47.619 0.00 0.00 0.00 4.93
4930 5376 1.532868 CTCAAGGAGGTTTGTTCAGCG 59.467 52.381 0.00 0.00 0.00 5.18
4948 5394 4.978083 ATGCTGAATGACCAAACATCTC 57.022 40.909 0.00 0.00 0.00 2.75
5036 5482 0.661187 CACGCACATTCCAGCACAAC 60.661 55.000 0.00 0.00 0.00 3.32
5054 5500 6.186957 ACCTATTGCATGATACTTGGAAACA 58.813 36.000 0.00 0.00 39.83 2.83
5131 5577 6.092955 ACACAACTCGTAAATAACTGAGGA 57.907 37.500 0.00 0.00 34.84 3.71
5140 5586 5.294356 TGCTACTGAACACAACTCGTAAAT 58.706 37.500 0.00 0.00 0.00 1.40
5164 5610 5.336055 CGTGATATAAAGGTGCAAAAACCCA 60.336 40.000 0.00 0.00 41.54 4.51
5184 5630 4.891627 TGAAAATTCAACAGAAGCGTGA 57.108 36.364 0.00 0.00 33.55 4.35
5186 5632 8.702438 CAAATAATGAAAATTCAACAGAAGCGT 58.298 29.630 0.00 0.00 41.13 5.07
5187 5633 8.702438 ACAAATAATGAAAATTCAACAGAAGCG 58.298 29.630 0.00 0.00 41.13 4.68
5297 5743 7.931948 CGTCTTATATTTTGGAATGGAGGTAGT 59.068 37.037 0.00 0.00 0.00 2.73
5298 5744 7.931948 ACGTCTTATATTTTGGAATGGAGGTAG 59.068 37.037 0.00 0.00 0.00 3.18
5299 5745 7.798071 ACGTCTTATATTTTGGAATGGAGGTA 58.202 34.615 0.00 0.00 0.00 3.08
5300 5746 6.659824 ACGTCTTATATTTTGGAATGGAGGT 58.340 36.000 0.00 0.00 0.00 3.85
5301 5747 7.568199 AACGTCTTATATTTTGGAATGGAGG 57.432 36.000 0.00 0.00 0.00 4.30
5302 5748 9.289303 CAAAACGTCTTATATTTTGGAATGGAG 57.711 33.333 0.00 0.00 38.88 3.86
5353 5800 8.746530 CATTCTTTAACCTACTACTACCTGACA 58.253 37.037 0.00 0.00 0.00 3.58
5369 5831 2.791158 CGGTGCGCCATCATTCTTTAAC 60.791 50.000 18.18 0.00 34.09 2.01
5384 5846 1.260561 GCACAATTAGGATACGGTGCG 59.739 52.381 0.00 0.00 41.61 5.34
5390 5852 8.774586 CCTAAACTACATGCACAATTAGGATAC 58.225 37.037 14.87 0.00 40.05 2.24
5394 5856 5.504010 CGCCTAAACTACATGCACAATTAGG 60.504 44.000 15.35 15.35 40.41 2.69
5409 5871 4.161754 AGCAGGTTAATAGACGCCTAAACT 59.838 41.667 0.00 0.00 0.00 2.66
5418 5880 5.819901 AGCAAAGATCAGCAGGTTAATAGAC 59.180 40.000 0.00 0.00 0.00 2.59
5469 5931 2.464157 GCCTAGGCAGATGGTGATAC 57.536 55.000 29.33 0.00 41.49 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.