Multiple sequence alignment - TraesCS2B01G355700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G355700 chr2B 100.000 4541 0 0 1 4541 507795584 507791044 0.000000e+00 8386.0
1 TraesCS2B01G355700 chr2B 93.252 652 44 0 2805 3456 507756123 507755472 0.000000e+00 961.0
2 TraesCS2B01G355700 chr2B 81.921 968 81 48 910 1822 507758830 507757902 0.000000e+00 732.0
3 TraesCS2B01G355700 chr2B 92.363 419 30 1 2388 2804 507757236 507756818 3.020000e-166 595.0
4 TraesCS2B01G355700 chr2B 83.752 597 77 9 2874 3458 507410545 507409957 8.590000e-152 547.0
5 TraesCS2B01G355700 chr2B 83.752 597 77 9 2874 3458 507505436 507504848 8.590000e-152 547.0
6 TraesCS2B01G355700 chr2B 81.803 610 90 13 2874 3464 507193168 507192561 4.080000e-135 492.0
7 TraesCS2B01G355700 chr2B 86.165 412 50 3 1900 2306 507757644 507757235 5.390000e-119 438.0
8 TraesCS2B01G355700 chr2B 95.977 174 4 2 3480 3651 637774928 637775100 3.460000e-71 279.0
9 TraesCS2B01G355700 chr2B 95.745 94 4 0 3769 3862 507614190 507614097 7.870000e-33 152.0
10 TraesCS2B01G355700 chr2B 82.692 156 20 6 275 423 507759536 507759381 1.030000e-26 132.0
11 TraesCS2B01G355700 chr2B 83.824 136 7 9 3652 3775 507754198 507754066 1.030000e-21 115.0
12 TraesCS2B01G355700 chr2B 96.491 57 2 0 1776 1832 507793767 507793711 1.340000e-15 95.3
13 TraesCS2B01G355700 chr2B 96.491 57 2 0 1818 1874 507793809 507793753 1.340000e-15 95.3
14 TraesCS2B01G355700 chr2B 97.436 39 0 1 2354 2391 192234446 192234408 1.050000e-06 65.8
15 TraesCS2B01G355700 chr2A 95.752 1648 50 7 1817 3458 557057960 557059593 0.000000e+00 2638.0
16 TraesCS2B01G355700 chr2A 95.890 657 27 0 2802 3458 557319365 557320021 0.000000e+00 1064.0
17 TraesCS2B01G355700 chr2A 89.089 834 56 19 12 814 557056118 557056947 0.000000e+00 1003.0
18 TraesCS2B01G355700 chr2A 93.385 650 41 2 3696 4344 557063489 557064137 0.000000e+00 961.0
19 TraesCS2B01G355700 chr2A 83.949 866 56 27 1012 1832 557057190 557058017 0.000000e+00 752.0
20 TraesCS2B01G355700 chr2A 95.704 419 15 2 2388 2804 557318159 557318576 0.000000e+00 671.0
21 TraesCS2B01G355700 chr2A 83.585 597 78 9 2874 3458 557400757 557401345 4.000000e-150 542.0
22 TraesCS2B01G355700 chr2A 80.936 598 94 10 2886 3464 556107940 556107344 5.360000e-124 455.0
23 TraesCS2B01G355700 chr2A 80.629 604 96 10 2874 3458 558090963 558091564 8.960000e-122 448.0
24 TraesCS2B01G355700 chr2A 88.116 345 28 6 1901 2232 557317787 557318131 9.150000e-107 398.0
25 TraesCS2B01G355700 chr2A 91.221 262 16 6 3652 3910 557321256 557321513 2.600000e-92 350.0
26 TraesCS2B01G355700 chr2A 77.363 455 67 23 827 1257 557313790 557314232 2.110000e-58 237.0
27 TraesCS2B01G355700 chr2A 82.264 265 30 9 2044 2303 556109123 556108871 3.560000e-51 213.0
28 TraesCS2B01G355700 chr2A 86.911 191 24 1 1295 1484 557316688 557316878 3.560000e-51 213.0
29 TraesCS2B01G355700 chr2A 83.478 230 15 9 1615 1822 557317312 557317540 4.640000e-45 193.0
30 TraesCS2B01G355700 chr2A 98.182 55 1 0 3656 3710 557061027 557061081 3.740000e-16 97.1
31 TraesCS2B01G355700 chr2A 88.462 78 8 1 272 348 557313186 557313263 4.840000e-15 93.5
32 TraesCS2B01G355700 chr2D 96.636 654 22 0 2805 3458 429925366 429924713 0.000000e+00 1086.0
33 TraesCS2B01G355700 chr2D 96.163 417 16 0 2388 2804 429927027 429926611 0.000000e+00 682.0
34 TraesCS2B01G355700 chr2D 93.394 439 27 2 3907 4344 319037526 319037089 0.000000e+00 649.0
35 TraesCS2B01G355700 chr2D 85.167 600 70 8 2874 3456 429835732 429835135 8.410000e-167 597.0
36 TraesCS2B01G355700 chr2D 78.505 1070 102 60 827 1833 429928686 429927682 6.550000e-163 584.0
37 TraesCS2B01G355700 chr2D 92.556 403 29 1 1904 2306 429927427 429927026 1.100000e-160 577.0
38 TraesCS2B01G355700 chr2D 83.701 589 90 4 2874 3458 429740442 429739856 6.640000e-153 551.0
39 TraesCS2B01G355700 chr2D 81.552 580 87 9 2898 3458 429691604 429691026 1.150000e-125 460.0
40 TraesCS2B01G355700 chr2D 80.629 604 96 10 2874 3458 430385187 430385788 8.960000e-122 448.0
41 TraesCS2B01G355700 chr2D 92.017 238 12 6 3652 3882 429923401 429923164 1.220000e-85 327.0
42 TraesCS2B01G355700 chr2D 95.349 172 8 0 4370 4541 445354444 445354273 1.610000e-69 274.0
43 TraesCS2B01G355700 chr2D 77.419 248 39 13 275 511 429929345 429929104 1.030000e-26 132.0
44 TraesCS2B01G355700 chr2D 91.765 85 7 0 2305 2389 610470836 610470752 7.980000e-23 119.0
45 TraesCS2B01G355700 chr2D 91.765 85 7 0 2305 2389 610493499 610493415 7.980000e-23 119.0
46 TraesCS2B01G355700 chr2D 100.000 29 0 0 2364 2392 95423606 95423578 2.000000e-03 54.7
47 TraesCS2B01G355700 chr7D 94.064 438 24 2 3908 4344 229292786 229293222 0.000000e+00 664.0
48 TraesCS2B01G355700 chr7D 93.622 439 26 2 3908 4345 265729872 265729435 0.000000e+00 654.0
49 TraesCS2B01G355700 chr7D 95.349 172 8 0 4370 4541 23567812 23567641 1.610000e-69 274.0
50 TraesCS2B01G355700 chr7D 95.349 172 8 0 4370 4541 483435730 483435559 1.610000e-69 274.0
51 TraesCS2B01G355700 chr7D 81.522 92 10 5 2303 2391 439236351 439236264 8.150000e-08 69.4
52 TraesCS2B01G355700 chr6A 93.379 438 27 2 3908 4344 133299849 133299413 0.000000e+00 647.0
53 TraesCS2B01G355700 chr6A 100.000 28 0 0 4337 4364 156280410 156280383 8.000000e-03 52.8
54 TraesCS2B01G355700 chr5A 93.409 440 23 6 3909 4344 281922419 281921982 0.000000e+00 647.0
55 TraesCS2B01G355700 chr3D 93.379 438 27 2 3908 4344 142992835 142993271 0.000000e+00 647.0
56 TraesCS2B01G355700 chr3D 93.379 438 27 2 3908 4344 296912729 296913165 0.000000e+00 647.0
57 TraesCS2B01G355700 chr4D 93.166 439 28 2 3908 4345 31832586 31833023 1.060000e-180 643.0
58 TraesCS2B01G355700 chr4D 94.972 179 8 1 3473 3651 329312049 329311872 3.460000e-71 279.0
59 TraesCS2B01G355700 chr4D 95.294 170 8 0 4372 4541 329187904 329188073 2.080000e-68 270.0
60 TraesCS2B01G355700 chr4D 79.144 374 67 10 2874 3242 458748660 458748293 9.760000e-62 248.0
61 TraesCS2B01G355700 chr4D 88.525 61 7 0 2723 2783 458750248 458750188 1.750000e-09 75.0
62 TraesCS2B01G355700 chr6B 100.000 177 0 0 3475 3651 684018630 684018454 1.220000e-85 327.0
63 TraesCS2B01G355700 chr6B 97.647 170 4 0 3482 3651 493510502 493510333 4.440000e-75 292.0
64 TraesCS2B01G355700 chr6B 84.536 97 10 5 2299 2393 568865794 568865887 1.740000e-14 91.6
65 TraesCS2B01G355700 chr6B 86.747 83 7 4 2311 2391 470794639 470794559 6.260000e-14 89.8
66 TraesCS2B01G355700 chr6B 80.000 90 14 4 2304 2391 496988873 496988960 3.790000e-06 63.9
67 TraesCS2B01G355700 chr1B 100.000 177 0 0 3475 3651 308594604 308594428 1.220000e-85 327.0
68 TraesCS2B01G355700 chr1B 91.935 186 13 2 3470 3654 41089638 41089822 4.510000e-65 259.0
69 TraesCS2B01G355700 chr7B 99.435 177 1 0 3475 3651 133493550 133493374 5.670000e-84 322.0
70 TraesCS2B01G355700 chr7B 95.556 180 5 1 3475 3651 332797827 332797648 7.440000e-73 285.0
71 TraesCS2B01G355700 chr3A 97.175 177 4 1 3475 3651 176053719 176053894 9.550000e-77 298.0
72 TraesCS2B01G355700 chr7A 95.349 172 8 0 4370 4541 219125516 219125687 1.610000e-69 274.0
73 TraesCS2B01G355700 chr7A 80.645 93 10 7 2305 2393 68191725 68191813 1.050000e-06 65.8
74 TraesCS2B01G355700 chr7A 92.500 40 1 2 2353 2391 183840901 183840863 6.350000e-04 56.5
75 TraesCS2B01G355700 chr7A 100.000 29 0 0 4338 4366 110537488 110537516 2.000000e-03 54.7
76 TraesCS2B01G355700 chr7A 100.000 28 0 0 4337 4364 646969256 646969229 8.000000e-03 52.8
77 TraesCS2B01G355700 chr5D 95.349 172 8 0 4370 4541 235190683 235190854 1.610000e-69 274.0
78 TraesCS2B01G355700 chr5D 88.725 204 22 1 4338 4541 101818318 101818520 9.760000e-62 248.0
79 TraesCS2B01G355700 chr5D 94.286 35 1 1 4338 4372 485536782 485536749 8.000000e-03 52.8
80 TraesCS2B01G355700 chr1D 95.349 172 8 0 4370 4541 252331717 252331546 1.610000e-69 274.0
81 TraesCS2B01G355700 chr1D 95.349 172 8 0 4370 4541 342326789 342326618 1.610000e-69 274.0
82 TraesCS2B01G355700 chr1D 97.222 36 1 0 4338 4373 237786416 237786451 1.360000e-05 62.1
83 TraesCS2B01G355700 chr1D 100.000 29 0 0 4338 4366 219828945 219828917 2.000000e-03 54.7
84 TraesCS2B01G355700 chr4B 79.245 371 71 6 2874 3242 572947136 572946770 2.100000e-63 254.0
85 TraesCS2B01G355700 chr4B 88.571 70 8 0 2714 2783 572914758 572914689 8.090000e-13 86.1
86 TraesCS2B01G355700 chr4A 79.301 372 70 7 2874 3242 10463326 10463693 2.100000e-63 254.0
87 TraesCS2B01G355700 chr4A 85.882 85 12 0 2305 2389 95662439 95662523 1.740000e-14 91.6
88 TraesCS2B01G355700 chr4A 85.714 70 10 0 2714 2783 10570884 10570953 1.750000e-09 75.0
89 TraesCS2B01G355700 chr6D 86.420 81 10 1 2309 2389 100523168 100523089 2.250000e-13 87.9
90 TraesCS2B01G355700 chr6D 100.000 29 0 0 4338 4366 400504869 400504841 2.000000e-03 54.7
91 TraesCS2B01G355700 chr1A 100.000 30 0 0 4338 4367 309631701 309631672 6.350000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G355700 chr2B 507791044 507795584 4540 True 2858.866667 8386 97.660667 1 4541 3 chr2B.!!$R7 4540
1 TraesCS2B01G355700 chr2B 507409957 507410545 588 True 547.000000 547 83.752000 2874 3458 1 chr2B.!!$R3 584
2 TraesCS2B01G355700 chr2B 507504848 507505436 588 True 547.000000 547 83.752000 2874 3458 1 chr2B.!!$R4 584
3 TraesCS2B01G355700 chr2B 507754066 507759536 5470 True 495.500000 961 86.702833 275 3775 6 chr2B.!!$R6 3500
4 TraesCS2B01G355700 chr2B 507192561 507193168 607 True 492.000000 492 81.803000 2874 3464 1 chr2B.!!$R2 590
5 TraesCS2B01G355700 chr2A 557056118 557064137 8019 False 1090.220000 2638 92.071400 12 4344 5 chr2A.!!$F3 4332
6 TraesCS2B01G355700 chr2A 557400757 557401345 588 False 542.000000 542 83.585000 2874 3458 1 chr2A.!!$F1 584
7 TraesCS2B01G355700 chr2A 558090963 558091564 601 False 448.000000 448 80.629000 2874 3458 1 chr2A.!!$F2 584
8 TraesCS2B01G355700 chr2A 557313186 557321513 8327 False 402.437500 1064 88.393125 272 3910 8 chr2A.!!$F4 3638
9 TraesCS2B01G355700 chr2A 556107344 556109123 1779 True 334.000000 455 81.600000 2044 3464 2 chr2A.!!$R1 1420
10 TraesCS2B01G355700 chr2D 429835135 429835732 597 True 597.000000 597 85.167000 2874 3456 1 chr2D.!!$R5 582
11 TraesCS2B01G355700 chr2D 429923164 429929345 6181 True 564.666667 1086 88.882667 275 3882 6 chr2D.!!$R9 3607
12 TraesCS2B01G355700 chr2D 429739856 429740442 586 True 551.000000 551 83.701000 2874 3458 1 chr2D.!!$R4 584
13 TraesCS2B01G355700 chr2D 429691026 429691604 578 True 460.000000 460 81.552000 2898 3458 1 chr2D.!!$R3 560
14 TraesCS2B01G355700 chr2D 430385187 430385788 601 False 448.000000 448 80.629000 2874 3458 1 chr2D.!!$F1 584

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
429 456 0.114560 TGTTCCCTTCGTCCTCCTCT 59.885 55.0 0.0 0.00 0.00 3.69 F
1292 4098 0.108615 ATTCAGAGAGGCGTCGGTTG 60.109 55.0 0.0 1.58 0.00 3.77 F
1836 4980 0.102120 GATCTCGTGGTGCTCTCCAG 59.898 60.0 0.0 0.00 38.23 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1817 4961 0.102120 CTGGAGAGCACCACGAGATC 59.898 60.000 0.00 0.00 35.91 2.75 R
2097 5507 1.478510 TCTGAAGAAAGAGGCGCCTAG 59.521 52.381 32.97 20.71 0.00 3.02 R
3610 10266 0.031817 ATCTTTGGAGGGGCAATGGG 60.032 55.000 0.00 0.00 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 1.979855 CCGTATCCATTTCCATGCCA 58.020 50.000 0.00 0.00 0.00 4.92
50 51 3.057315 CCGTATCCATTTCCATGCCATTC 60.057 47.826 0.00 0.00 0.00 2.67
60 61 3.364549 TCCATGCCATTCCGAAATCTTT 58.635 40.909 0.00 0.00 0.00 2.52
65 66 3.261580 GCCATTCCGAAATCTTTTTGGG 58.738 45.455 6.45 0.00 40.88 4.12
75 76 5.368145 GAAATCTTTTTGGGAAGTTTGCCT 58.632 37.500 4.03 0.00 39.72 4.75
98 99 8.193438 GCCTGATCTAAAAAGCAGATTTTGTAT 58.807 33.333 0.00 0.00 40.27 2.29
113 114 7.538678 CAGATTTTGTATTACAGTTTGACCAGC 59.461 37.037 0.00 0.00 0.00 4.85
133 134 0.973632 AGAAGACCCGTGCACATACA 59.026 50.000 18.64 0.00 0.00 2.29
134 135 1.555075 AGAAGACCCGTGCACATACAT 59.445 47.619 18.64 0.00 0.00 2.29
135 136 2.764010 AGAAGACCCGTGCACATACATA 59.236 45.455 18.64 0.00 0.00 2.29
136 137 2.890808 AGACCCGTGCACATACATAG 57.109 50.000 18.64 0.00 0.00 2.23
195 202 2.589798 TCGGTAAAGCAGTAATCCCG 57.410 50.000 0.00 0.00 35.41 5.14
200 207 4.446719 CGGTAAAGCAGTAATCCCGAATAC 59.553 45.833 0.00 0.00 36.12 1.89
202 209 5.465724 GGTAAAGCAGTAATCCCGAATACAG 59.534 44.000 0.00 0.00 0.00 2.74
247 254 2.864343 CTCGTATCTAAAAGGGGCAACG 59.136 50.000 0.00 0.00 37.60 4.10
252 259 3.706600 TCTAAAAGGGGCAACGTATGT 57.293 42.857 0.00 0.00 37.60 2.29
269 276 4.332819 CGTATGTCCTGAAAACCAGAATCC 59.667 45.833 0.00 0.00 45.78 3.01
292 300 5.176774 CCGGTAAAATTTGAAAGTTGGCTTC 59.823 40.000 0.00 0.00 33.01 3.86
294 302 5.468746 GGTAAAATTTGAAAGTTGGCTTCCC 59.531 40.000 0.00 0.00 33.01 3.97
352 371 1.970640 AGGCCAACCCATTCACTTTTC 59.029 47.619 5.01 0.00 36.11 2.29
357 381 3.070015 CCAACCCATTCACTTTTCTGCTT 59.930 43.478 0.00 0.00 0.00 3.91
387 412 1.414550 TGGTGAGACCGTGTGAAATCA 59.585 47.619 0.00 0.00 42.58 2.57
426 453 0.533032 CTCTGTTCCCTTCGTCCTCC 59.467 60.000 0.00 0.00 0.00 4.30
428 455 0.533032 CTGTTCCCTTCGTCCTCCTC 59.467 60.000 0.00 0.00 0.00 3.71
429 456 0.114560 TGTTCCCTTCGTCCTCCTCT 59.885 55.000 0.00 0.00 0.00 3.69
430 457 1.268066 GTTCCCTTCGTCCTCCTCTT 58.732 55.000 0.00 0.00 0.00 2.85
440 470 0.115152 TCCTCCTCTTGACTGGCTGA 59.885 55.000 0.00 0.00 0.00 4.26
445 475 1.622811 CCTCTTGACTGGCTGAGTTCT 59.377 52.381 0.00 0.00 33.83 3.01
452 486 3.326006 TGACTGGCTGAGTTCTTGAGATT 59.674 43.478 0.00 0.00 33.83 2.40
455 489 3.933955 CTGGCTGAGTTCTTGAGATTGAG 59.066 47.826 0.00 0.00 0.00 3.02
459 493 4.172505 CTGAGTTCTTGAGATTGAGTCCG 58.827 47.826 0.00 0.00 0.00 4.79
488 530 3.066380 TGAACCATGATGTTGACACTCG 58.934 45.455 0.00 0.00 0.00 4.18
491 533 2.002586 CCATGATGTTGACACTCGACC 58.997 52.381 0.00 0.00 29.57 4.79
506 548 2.169769 CTCGACCCATACCAAAGGCTTA 59.830 50.000 0.00 0.00 0.00 3.09
512 554 5.198207 ACCCATACCAAAGGCTTAACATAC 58.802 41.667 0.00 0.00 0.00 2.39
524 566 6.476378 AGGCTTAACATACAAGACATGTTCT 58.524 36.000 0.00 0.00 43.69 3.01
531 573 3.983044 ACAAGACATGTTCTCCTACCC 57.017 47.619 0.00 0.00 40.06 3.69
540 582 1.747355 GTTCTCCTACCCGATCGAACA 59.253 52.381 18.66 0.00 33.05 3.18
551 593 3.484649 CCCGATCGAACAAATGTAGTACG 59.515 47.826 18.66 0.00 0.00 3.67
560 602 5.212532 ACAAATGTAGTACGGTACAACCA 57.787 39.130 19.62 12.60 38.47 3.67
605 648 4.832823 AGTTTTATTTGGACCAAGGGAGTG 59.167 41.667 7.07 0.00 0.00 3.51
670 766 3.128589 TGCAAAGTCTTGTTTCACTGGAC 59.871 43.478 0.00 0.00 34.79 4.02
702 850 0.584396 TCGCTTACCACAAAACGCAG 59.416 50.000 0.00 0.00 0.00 5.18
727 875 2.745515 AGCACTCTCGTTTTAGGGTC 57.254 50.000 0.00 0.00 0.00 4.46
728 876 1.275573 AGCACTCTCGTTTTAGGGTCC 59.724 52.381 0.00 0.00 0.00 4.46
784 932 6.862711 AAAAGTTTCCTCTCGTAGAAAAGG 57.137 37.500 0.00 0.00 33.98 3.11
791 963 3.622630 CTCTCGTAGAAAAGGAGGAGGA 58.377 50.000 0.00 0.00 39.97 3.71
863 1096 1.371267 GCGCTGGGGAAAACGTTTC 60.371 57.895 15.01 7.87 0.00 2.78
864 1097 2.026522 CGCTGGGGAAAACGTTTCA 58.973 52.632 15.01 6.98 0.00 2.69
870 1103 1.607148 GGGGAAAACGTTTCAGACAGG 59.393 52.381 15.01 0.00 0.00 4.00
872 1105 1.333791 GGAAAACGTTTCAGACAGGCG 60.334 52.381 15.01 0.00 0.00 5.52
908 1225 4.856607 CGTCTTCTCGCCCCTCGC 62.857 72.222 0.00 0.00 38.27 5.03
909 1226 4.516195 GTCTTCTCGCCCCTCGCC 62.516 72.222 0.00 0.00 38.27 5.54
961 1278 2.359169 GGCTCGGACACTCCCATCA 61.359 63.158 0.00 0.00 31.13 3.07
986 1303 0.895559 CACTTGCCCAGAACTTCCCC 60.896 60.000 0.00 0.00 0.00 4.81
987 1306 1.068352 ACTTGCCCAGAACTTCCCCT 61.068 55.000 0.00 0.00 0.00 4.79
991 1310 1.916206 GCCCAGAACTTCCCCTCCTC 61.916 65.000 0.00 0.00 0.00 3.71
994 1313 1.083141 AGAACTTCCCCTCCTCCCC 59.917 63.158 0.00 0.00 0.00 4.81
995 1314 1.229853 GAACTTCCCCTCCTCCCCA 60.230 63.158 0.00 0.00 0.00 4.96
1023 1362 2.277072 CTCCGCTCTCCTCTCCCA 59.723 66.667 0.00 0.00 0.00 4.37
1041 1380 0.678395 CACACCACTCTGCTCTCAGT 59.322 55.000 0.00 0.00 41.10 3.41
1043 1382 1.342819 ACACCACTCTGCTCTCAGTTC 59.657 52.381 0.00 0.00 41.10 3.01
1104 1450 1.629043 TGGAAGAGTAAGTGAGCCGT 58.371 50.000 0.00 0.00 0.00 5.68
1110 1456 1.540267 GAGTAAGTGAGCCGTGTCTGA 59.460 52.381 0.00 0.00 0.00 3.27
1114 1460 1.735920 GTGAGCCGTGTCTGAGCTG 60.736 63.158 0.00 0.00 36.87 4.24
1121 1470 1.612469 CGTGTCTGAGCTGTGCTTCG 61.612 60.000 0.00 0.00 39.88 3.79
1128 1477 0.457681 GAGCTGTGCTTCGACTCTCC 60.458 60.000 0.00 0.00 39.88 3.71
1142 1491 1.353022 ACTCTCCACTCGGTCTCTCTT 59.647 52.381 0.00 0.00 0.00 2.85
1162 1530 0.383949 TTTTTGCTGCTCCGGTGTTC 59.616 50.000 0.00 0.00 0.00 3.18
1218 1586 5.186198 GGGTATTATCTGCTTCTGTGTTGT 58.814 41.667 0.00 0.00 0.00 3.32
1225 1593 0.179018 GCTTCTGTGTTGTGAGGGGT 60.179 55.000 0.00 0.00 0.00 4.95
1250 1621 2.019984 GGATTTGATGGTGTGAGAGGC 58.980 52.381 0.00 0.00 0.00 4.70
1251 1622 1.667724 GATTTGATGGTGTGAGAGGCG 59.332 52.381 0.00 0.00 0.00 5.52
1254 1625 1.517257 GATGGTGTGAGAGGCGTCG 60.517 63.158 0.00 0.00 0.00 5.12
1256 1627 3.681835 GGTGTGAGAGGCGTCGGT 61.682 66.667 0.00 0.00 0.00 4.69
1258 1629 3.733960 TGTGAGAGGCGTCGGTCG 61.734 66.667 0.00 0.00 43.12 4.79
1289 4095 0.173481 TTGATTCAGAGAGGCGTCGG 59.827 55.000 0.00 0.00 0.00 4.79
1290 4096 0.965866 TGATTCAGAGAGGCGTCGGT 60.966 55.000 0.00 0.00 0.00 4.69
1291 4097 0.173708 GATTCAGAGAGGCGTCGGTT 59.826 55.000 0.00 0.00 0.00 4.44
1292 4098 0.108615 ATTCAGAGAGGCGTCGGTTG 60.109 55.000 0.00 1.58 0.00 3.77
1293 4099 2.765250 TTCAGAGAGGCGTCGGTTGC 62.765 60.000 0.00 0.00 0.00 4.17
1445 4258 0.824759 GGAGAGCAGACCGGTGTAAT 59.175 55.000 14.63 0.00 0.00 1.89
1447 4260 1.204941 GAGAGCAGACCGGTGTAATGT 59.795 52.381 14.63 0.00 0.00 2.71
1577 4399 2.586425 CTCCCAAAGGAAGCACAGAAA 58.414 47.619 0.00 0.00 43.40 2.52
1580 4402 3.321682 TCCCAAAGGAAGCACAGAAATTG 59.678 43.478 0.00 0.00 40.08 2.32
1582 4404 4.301628 CCAAAGGAAGCACAGAAATTGTC 58.698 43.478 0.00 0.00 38.16 3.18
1584 4406 4.574599 AAGGAAGCACAGAAATTGTCAC 57.425 40.909 0.00 0.00 38.16 3.67
1606 4722 1.239347 AAAAAGGACGGAAGCAGAGC 58.761 50.000 0.00 0.00 0.00 4.09
1619 4735 2.678934 AGAGCAGGGTAACGCCGA 60.679 61.111 0.00 0.00 38.44 5.54
1635 4760 2.126228 GACGTCGTGAATCCGGCA 60.126 61.111 0.63 0.00 31.49 5.69
1674 4799 4.408821 CGGCAGTGCAGGGGCTAA 62.409 66.667 18.61 0.00 41.91 3.09
1774 4918 6.707440 TGAAGTAGAGACTGATCTGATTCC 57.293 41.667 6.60 0.00 35.52 3.01
1778 4922 4.852134 AGAGACTGATCTGATTCCGATG 57.148 45.455 6.60 0.00 34.34 3.84
1817 4961 0.389391 AACCTGTCTGTCTCGTGGTG 59.611 55.000 0.00 0.00 0.00 4.17
1818 4962 0.467474 ACCTGTCTGTCTCGTGGTGA 60.467 55.000 0.00 0.00 0.00 4.02
1819 4963 0.891373 CCTGTCTGTCTCGTGGTGAT 59.109 55.000 0.00 0.00 0.00 3.06
1820 4964 1.135257 CCTGTCTGTCTCGTGGTGATC 60.135 57.143 0.00 0.00 0.00 2.92
1821 4965 1.815613 CTGTCTGTCTCGTGGTGATCT 59.184 52.381 0.00 0.00 0.00 2.75
1822 4966 1.813178 TGTCTGTCTCGTGGTGATCTC 59.187 52.381 0.00 0.00 0.00 2.75
1823 4967 1.087501 TCTGTCTCGTGGTGATCTCG 58.912 55.000 0.00 0.00 0.00 4.04
1824 4968 0.805614 CTGTCTCGTGGTGATCTCGT 59.194 55.000 0.00 0.00 0.00 4.18
1825 4969 0.521735 TGTCTCGTGGTGATCTCGTG 59.478 55.000 0.00 0.00 0.00 4.35
1826 4970 0.179161 GTCTCGTGGTGATCTCGTGG 60.179 60.000 0.00 0.00 0.00 4.94
1827 4971 0.608308 TCTCGTGGTGATCTCGTGGT 60.608 55.000 0.00 0.00 0.00 4.16
1828 4972 0.456824 CTCGTGGTGATCTCGTGGTG 60.457 60.000 0.00 0.00 0.00 4.17
1829 4973 2.094659 CGTGGTGATCTCGTGGTGC 61.095 63.158 0.00 0.00 0.00 5.01
1830 4974 1.293498 GTGGTGATCTCGTGGTGCT 59.707 57.895 0.00 0.00 0.00 4.40
1831 4975 0.737715 GTGGTGATCTCGTGGTGCTC 60.738 60.000 0.00 0.00 0.00 4.26
1832 4976 0.900182 TGGTGATCTCGTGGTGCTCT 60.900 55.000 0.00 0.00 0.00 4.09
1833 4977 0.179124 GGTGATCTCGTGGTGCTCTC 60.179 60.000 0.00 0.00 0.00 3.20
1834 4978 0.179124 GTGATCTCGTGGTGCTCTCC 60.179 60.000 0.00 0.00 0.00 3.71
1835 4979 0.611896 TGATCTCGTGGTGCTCTCCA 60.612 55.000 0.00 0.00 34.85 3.86
1836 4980 0.102120 GATCTCGTGGTGCTCTCCAG 59.898 60.000 0.00 0.00 38.23 3.86
1837 4981 0.613292 ATCTCGTGGTGCTCTCCAGT 60.613 55.000 0.00 0.00 38.23 4.00
1838 4982 1.214062 CTCGTGGTGCTCTCCAGTC 59.786 63.158 0.00 0.00 38.23 3.51
1839 4983 2.126307 CGTGGTGCTCTCCAGTCG 60.126 66.667 0.00 0.00 38.23 4.18
1840 4984 2.626780 CGTGGTGCTCTCCAGTCGA 61.627 63.158 0.00 0.00 38.23 4.20
1841 4985 1.666011 GTGGTGCTCTCCAGTCGAA 59.334 57.895 0.00 0.00 38.23 3.71
1842 4986 0.667792 GTGGTGCTCTCCAGTCGAAC 60.668 60.000 0.00 0.00 38.23 3.95
1843 4987 1.079750 GGTGCTCTCCAGTCGAACC 60.080 63.158 0.00 0.00 0.00 3.62
1844 4988 1.536943 GGTGCTCTCCAGTCGAACCT 61.537 60.000 0.00 0.00 0.00 3.50
1845 4989 0.389166 GTGCTCTCCAGTCGAACCTG 60.389 60.000 0.00 0.00 0.00 4.00
1846 4990 0.827925 TGCTCTCCAGTCGAACCTGT 60.828 55.000 2.74 0.00 0.00 4.00
1847 4991 0.109039 GCTCTCCAGTCGAACCTGTC 60.109 60.000 2.74 0.00 0.00 3.51
1848 4992 1.540267 CTCTCCAGTCGAACCTGTCT 58.460 55.000 2.74 0.00 0.00 3.41
1849 4993 1.201181 CTCTCCAGTCGAACCTGTCTG 59.799 57.143 2.74 0.00 0.00 3.51
1850 4994 0.962489 CTCCAGTCGAACCTGTCTGT 59.038 55.000 2.74 0.00 0.00 3.41
1851 4995 0.959553 TCCAGTCGAACCTGTCTGTC 59.040 55.000 2.74 0.00 0.00 3.51
1852 4996 0.962489 CCAGTCGAACCTGTCTGTCT 59.038 55.000 2.74 0.00 0.00 3.41
1853 4997 1.068194 CCAGTCGAACCTGTCTGTCTC 60.068 57.143 2.74 0.00 0.00 3.36
1854 4998 0.875728 AGTCGAACCTGTCTGTCTCG 59.124 55.000 0.00 0.00 0.00 4.04
1855 4999 0.592148 GTCGAACCTGTCTGTCTCGT 59.408 55.000 0.00 0.00 0.00 4.18
1972 5369 3.545228 GCGTCGTGAATCAAAGTGTTTCA 60.545 43.478 0.00 0.00 34.70 2.69
1974 5371 4.260212 CGTCGTGAATCAAAGTGTTTCACT 60.260 41.667 21.14 0.00 46.72 3.41
1975 5372 5.051307 CGTCGTGAATCAAAGTGTTTCACTA 60.051 40.000 21.14 13.03 46.72 2.74
2078 5488 4.564782 ATCACTGGCTCTTCAGATCAAA 57.435 40.909 0.00 0.00 38.11 2.69
2079 5489 4.564782 TCACTGGCTCTTCAGATCAAAT 57.435 40.909 0.00 0.00 38.11 2.32
2084 5494 6.541278 CACTGGCTCTTCAGATCAAATAATGA 59.459 38.462 0.00 0.00 39.08 2.57
2123 5533 2.481952 CGCCTCTTTCTTCAGAAACAGG 59.518 50.000 15.73 15.73 46.45 4.00
2162 5577 5.594317 TCGATGATCTGTATTTGTCTCTGGA 59.406 40.000 0.00 0.00 0.00 3.86
2328 5745 4.045022 CCCCCTCCGTCCCATAATATAAT 58.955 47.826 0.00 0.00 0.00 1.28
2363 5780 7.411049 GCAAGCTGTTTTAGTTTGTAAAAACGT 60.411 33.333 2.83 0.00 45.96 3.99
2385 5802 5.021458 GTCTTATATTATGGGACCGAGGGA 58.979 45.833 0.00 0.00 0.00 4.20
2392 5809 1.002069 TGGGACCGAGGGAGTAGTTA 58.998 55.000 0.00 0.00 0.00 2.24
2673 6606 7.099266 TCATTGTTACTGGCAAGATAATTGG 57.901 36.000 0.00 0.00 0.00 3.16
2865 8059 8.528044 TTCCTCTTGGTTAAAGTGTAAAATGT 57.472 30.769 0.00 0.00 37.18 2.71
2907 8101 1.133823 TGCAGGTTTCATCACAGTGGT 60.134 47.619 0.00 0.00 0.00 4.16
2937 8131 8.664669 ACTCCCTATTGGTGTTAAATTTGATT 57.335 30.769 0.00 0.00 37.57 2.57
3282 8483 5.401531 AGATTAGGAGCAACGACTACAAA 57.598 39.130 0.00 0.00 0.00 2.83
3292 8493 5.756347 AGCAACGACTACAAAGTTTGTGATA 59.244 36.000 27.65 10.08 45.03 2.15
3474 10130 9.269415 GAAAATGAAATGTACGTATGTTGTACC 57.731 33.333 0.00 0.00 41.13 3.34
3476 10132 6.954616 TGAAATGTACGTATGTTGTACCAG 57.045 37.500 0.00 0.00 41.13 4.00
3478 10134 2.866198 TGTACGTATGTTGTACCAGCG 58.134 47.619 0.00 0.00 41.13 5.18
3479 10135 2.187707 GTACGTATGTTGTACCAGCGG 58.812 52.381 0.00 0.00 36.94 5.52
3482 10138 1.153529 TATGTTGTACCAGCGGCGG 60.154 57.895 9.78 8.89 0.00 6.13
3483 10139 1.605971 TATGTTGTACCAGCGGCGGA 61.606 55.000 9.78 0.05 0.00 5.54
3484 10140 2.813908 GTTGTACCAGCGGCGGAG 60.814 66.667 9.78 2.07 0.00 4.63
3499 10155 2.360191 GAGCTTCATGGGGGCCAA 59.640 61.111 4.39 0.00 36.95 4.52
3500 10156 2.037847 AGCTTCATGGGGGCCAAC 59.962 61.111 4.39 0.00 36.95 3.77
3501 10157 3.076916 GCTTCATGGGGGCCAACC 61.077 66.667 4.39 6.97 36.95 3.77
3502 10158 2.772924 CTTCATGGGGGCCAACCT 59.227 61.111 15.84 0.48 36.95 3.50
3503 10159 1.683365 CTTCATGGGGGCCAACCTG 60.683 63.158 15.84 11.47 36.95 4.00
3504 10160 3.236769 TTCATGGGGGCCAACCTGG 62.237 63.158 15.84 8.58 41.55 4.45
3505 10161 4.783501 CATGGGGGCCAACCTGGG 62.784 72.222 15.84 3.09 38.19 4.45
3531 10187 4.637663 CCCCCAGCCCAAGAAAAA 57.362 55.556 0.00 0.00 0.00 1.94
3533 10189 1.361204 CCCCCAGCCCAAGAAAAATT 58.639 50.000 0.00 0.00 0.00 1.82
3534 10190 1.278985 CCCCCAGCCCAAGAAAAATTC 59.721 52.381 0.00 0.00 0.00 2.17
3536 10192 2.289631 CCCCAGCCCAAGAAAAATTCAC 60.290 50.000 0.00 0.00 0.00 3.18
3537 10193 2.289631 CCCAGCCCAAGAAAAATTCACC 60.290 50.000 0.00 0.00 0.00 4.02
3538 10194 2.634453 CCAGCCCAAGAAAAATTCACCT 59.366 45.455 0.00 0.00 0.00 4.00
3540 10196 4.283212 CCAGCCCAAGAAAAATTCACCTAA 59.717 41.667 0.00 0.00 0.00 2.69
3541 10197 5.046376 CCAGCCCAAGAAAAATTCACCTAAT 60.046 40.000 0.00 0.00 0.00 1.73
3542 10198 6.154363 CCAGCCCAAGAAAAATTCACCTAATA 59.846 38.462 0.00 0.00 0.00 0.98
3543 10199 7.035612 CAGCCCAAGAAAAATTCACCTAATAC 58.964 38.462 0.00 0.00 0.00 1.89
3544 10200 6.723977 AGCCCAAGAAAAATTCACCTAATACA 59.276 34.615 0.00 0.00 0.00 2.29
3545 10201 6.811665 GCCCAAGAAAAATTCACCTAATACAC 59.188 38.462 0.00 0.00 0.00 2.90
3546 10202 7.027161 CCCAAGAAAAATTCACCTAATACACG 58.973 38.462 0.00 0.00 0.00 4.49
3547 10203 7.308951 CCCAAGAAAAATTCACCTAATACACGT 60.309 37.037 0.00 0.00 0.00 4.49
3551 10207 9.498176 AGAAAAATTCACCTAATACACGTTAGT 57.502 29.630 0.00 0.00 31.24 2.24
3556 10212 9.887406 AATTCACCTAATACACGTTAGTTTTTG 57.113 29.630 0.00 0.00 31.24 2.44
3558 10214 7.853524 TCACCTAATACACGTTAGTTTTTGTG 58.146 34.615 0.00 0.00 38.28 3.33
3559 10215 6.575942 CACCTAATACACGTTAGTTTTTGTGC 59.424 38.462 0.00 0.00 35.79 4.57
3561 10217 6.795114 CCTAATACACGTTAGTTTTTGTGCTG 59.205 38.462 0.00 0.00 35.79 4.41
3562 10218 3.414549 ACACGTTAGTTTTTGTGCTGG 57.585 42.857 0.00 0.00 35.79 4.85
3563 10219 3.011119 ACACGTTAGTTTTTGTGCTGGA 58.989 40.909 0.00 0.00 35.79 3.86
3564 10220 3.630312 ACACGTTAGTTTTTGTGCTGGAT 59.370 39.130 0.00 0.00 35.79 3.41
3565 10221 3.974401 CACGTTAGTTTTTGTGCTGGATG 59.026 43.478 0.00 0.00 0.00 3.51
3566 10222 3.630312 ACGTTAGTTTTTGTGCTGGATGT 59.370 39.130 0.00 0.00 0.00 3.06
3567 10223 4.097286 ACGTTAGTTTTTGTGCTGGATGTT 59.903 37.500 0.00 0.00 0.00 2.71
3568 10224 4.675114 CGTTAGTTTTTGTGCTGGATGTTC 59.325 41.667 0.00 0.00 0.00 3.18
3569 10225 5.587289 GTTAGTTTTTGTGCTGGATGTTCA 58.413 37.500 0.00 0.00 0.00 3.18
3570 10226 4.311816 AGTTTTTGTGCTGGATGTTCAG 57.688 40.909 0.00 0.00 37.79 3.02
3571 10227 3.701040 AGTTTTTGTGCTGGATGTTCAGT 59.299 39.130 0.00 0.00 37.12 3.41
3572 10228 4.887071 AGTTTTTGTGCTGGATGTTCAGTA 59.113 37.500 0.00 0.00 37.12 2.74
3573 10229 5.359576 AGTTTTTGTGCTGGATGTTCAGTAA 59.640 36.000 0.00 0.00 37.12 2.24
3575 10231 5.843673 TTTGTGCTGGATGTTCAGTAAAA 57.156 34.783 0.00 0.00 37.12 1.52
3576 10232 5.843673 TTGTGCTGGATGTTCAGTAAAAA 57.156 34.783 0.00 0.00 37.12 1.94
3577 10233 5.181690 TGTGCTGGATGTTCAGTAAAAAC 57.818 39.130 0.00 0.00 37.12 2.43
3578 10234 4.642437 TGTGCTGGATGTTCAGTAAAAACA 59.358 37.500 0.00 0.00 40.63 2.83
3579 10235 5.215160 GTGCTGGATGTTCAGTAAAAACAG 58.785 41.667 0.00 0.00 39.78 3.16
3580 10236 4.278170 TGCTGGATGTTCAGTAAAAACAGG 59.722 41.667 0.00 0.00 39.78 4.00
3581 10237 4.798574 CTGGATGTTCAGTAAAAACAGGC 58.201 43.478 0.00 0.00 39.78 4.85
3582 10238 4.469657 TGGATGTTCAGTAAAAACAGGCT 58.530 39.130 0.00 0.00 39.78 4.58
3583 10239 5.626142 TGGATGTTCAGTAAAAACAGGCTA 58.374 37.500 0.00 0.00 39.78 3.93
3584 10240 6.065374 TGGATGTTCAGTAAAAACAGGCTAA 58.935 36.000 0.00 0.00 39.78 3.09
3585 10241 6.547880 TGGATGTTCAGTAAAAACAGGCTAAA 59.452 34.615 0.00 0.00 39.78 1.85
3586 10242 6.861572 GGATGTTCAGTAAAAACAGGCTAAAC 59.138 38.462 0.00 0.00 39.78 2.01
3587 10243 6.139048 TGTTCAGTAAAAACAGGCTAAACC 57.861 37.500 0.00 0.00 39.61 3.27
3601 10257 4.371855 GCTAAACCTCATAGTTTTGCCC 57.628 45.455 10.96 0.00 46.14 5.36
3602 10258 3.130516 GCTAAACCTCATAGTTTTGCCCC 59.869 47.826 10.96 0.00 46.14 5.80
3603 10259 3.542969 AAACCTCATAGTTTTGCCCCT 57.457 42.857 0.00 0.00 36.57 4.79
3604 10260 2.808906 ACCTCATAGTTTTGCCCCTC 57.191 50.000 0.00 0.00 0.00 4.30
3605 10261 1.285078 ACCTCATAGTTTTGCCCCTCC 59.715 52.381 0.00 0.00 0.00 4.30
3606 10262 1.566231 CCTCATAGTTTTGCCCCTCCT 59.434 52.381 0.00 0.00 0.00 3.69
3607 10263 2.024941 CCTCATAGTTTTGCCCCTCCTT 60.025 50.000 0.00 0.00 0.00 3.36
3608 10264 3.019564 CTCATAGTTTTGCCCCTCCTTG 58.980 50.000 0.00 0.00 0.00 3.61
3609 10265 2.102578 CATAGTTTTGCCCCTCCTTGG 58.897 52.381 0.00 0.00 0.00 3.61
3615 10271 4.079961 GCCCCTCCTTGGCCCATT 62.080 66.667 0.00 0.00 43.33 3.16
3616 10272 2.042639 CCCCTCCTTGGCCCATTG 60.043 66.667 0.00 0.00 0.00 2.82
3617 10273 2.761213 CCCTCCTTGGCCCATTGC 60.761 66.667 0.00 0.00 40.16 3.56
3626 10282 2.284552 GCCCATTGCCCCTCCAAA 60.285 61.111 0.00 0.00 0.00 3.28
3627 10283 2.361567 GCCCATTGCCCCTCCAAAG 61.362 63.158 0.00 0.00 0.00 2.77
3628 10284 1.387737 CCCATTGCCCCTCCAAAGA 59.612 57.895 0.00 0.00 0.00 2.52
3629 10285 0.031817 CCCATTGCCCCTCCAAAGAT 60.032 55.000 0.00 0.00 0.00 2.40
3630 10286 1.623279 CCCATTGCCCCTCCAAAGATT 60.623 52.381 0.00 0.00 0.00 2.40
3631 10287 2.359143 CCCATTGCCCCTCCAAAGATTA 60.359 50.000 0.00 0.00 0.00 1.75
3632 10288 2.961062 CCATTGCCCCTCCAAAGATTAG 59.039 50.000 0.00 0.00 0.00 1.73
3633 10289 2.826674 TTGCCCCTCCAAAGATTAGG 57.173 50.000 0.00 0.00 0.00 2.69
3634 10290 0.258774 TGCCCCTCCAAAGATTAGGC 59.741 55.000 0.00 0.00 39.41 3.93
3635 10291 0.468214 GCCCCTCCAAAGATTAGGCC 60.468 60.000 0.00 0.00 32.68 5.19
3636 10292 0.186143 CCCCTCCAAAGATTAGGCCC 59.814 60.000 0.00 0.00 0.00 5.80
3637 10293 0.926293 CCCTCCAAAGATTAGGCCCA 59.074 55.000 0.00 0.00 0.00 5.36
3638 10294 1.287739 CCCTCCAAAGATTAGGCCCAA 59.712 52.381 0.00 0.00 0.00 4.12
3639 10295 2.659428 CCTCCAAAGATTAGGCCCAAG 58.341 52.381 0.00 0.00 0.00 3.61
3640 10296 2.027385 CTCCAAAGATTAGGCCCAAGC 58.973 52.381 0.00 0.00 38.76 4.01
3641 10297 1.640670 TCCAAAGATTAGGCCCAAGCT 59.359 47.619 0.00 0.00 39.73 3.74
3642 10298 2.027385 CCAAAGATTAGGCCCAAGCTC 58.973 52.381 1.12 0.00 39.73 4.09
3643 10299 2.027385 CAAAGATTAGGCCCAAGCTCC 58.973 52.381 1.12 0.00 39.73 4.70
3644 10300 0.181350 AAGATTAGGCCCAAGCTCCG 59.819 55.000 1.12 0.00 39.73 4.63
3645 10301 1.894282 GATTAGGCCCAAGCTCCGC 60.894 63.158 0.00 0.00 39.73 5.54
3646 10302 3.421728 ATTAGGCCCAAGCTCCGCC 62.422 63.158 0.00 10.00 43.35 6.13
3651 10307 4.335647 CCCAAGCTCCGCCACTGT 62.336 66.667 0.00 0.00 0.00 3.55
3652 10308 3.052082 CCAAGCTCCGCCACTGTG 61.052 66.667 0.00 0.00 0.00 3.66
3653 10309 2.281070 CAAGCTCCGCCACTGTGT 60.281 61.111 7.08 0.00 0.00 3.72
3654 10310 1.893808 CAAGCTCCGCCACTGTGTT 60.894 57.895 7.08 0.00 0.00 3.32
3766 12856 5.853702 CTACTTTTGTAGTGGTAGCAGACCC 60.854 48.000 0.00 0.00 44.36 4.46
3767 12857 8.738064 CTACTTTTGTAGTGGTAGCAGACCCC 62.738 50.000 0.00 0.00 44.36 4.95
3842 12936 1.344953 ACAACAGCCAGTCAGTCCCA 61.345 55.000 0.00 0.00 0.00 4.37
3903 12997 7.336396 ACATTAGTTAGTTACTAGGCTTTGGG 58.664 38.462 0.00 0.00 40.35 4.12
3912 13006 7.292319 AGTTACTAGGCTTTGGGTTTTCTTTA 58.708 34.615 0.00 0.00 0.00 1.85
3921 13015 7.225931 GGCTTTGGGTTTTCTTTACTTTTTAGG 59.774 37.037 0.00 0.00 0.00 2.69
3935 13029 9.606631 TTTACTTTTTAGGTTGCAACAATCATT 57.393 25.926 29.55 10.70 0.00 2.57
3949 13043 6.797033 GCAACAATCATTCTTACTGTACACAC 59.203 38.462 0.00 0.00 0.00 3.82
3961 13055 3.181454 ACTGTACACACCTTTTGAGAGGG 60.181 47.826 0.00 0.00 41.31 4.30
3974 13068 1.134699 TGAGAGGGACACGCATGAATC 60.135 52.381 0.00 0.00 0.00 2.52
3975 13069 0.904649 AGAGGGACACGCATGAATCA 59.095 50.000 0.00 0.00 0.00 2.57
4024 13118 6.983307 GCTTCACTCATATCTTTTGAGCTAGA 59.017 38.462 0.00 0.00 43.57 2.43
4065 13159 9.618890 TGCTTCACTTATATCTTTTTAGAGCAT 57.381 29.630 0.00 0.00 0.00 3.79
4073 13167 2.083774 CTTTTTAGAGCATGGCGGTGA 58.916 47.619 0.00 0.00 0.00 4.02
4074 13168 1.448985 TTTTAGAGCATGGCGGTGAC 58.551 50.000 0.00 0.00 0.00 3.67
4144 13238 7.496529 TTTTGAGAGTCTCTAAACAACATGG 57.503 36.000 21.12 0.00 32.33 3.66
4151 13245 9.003658 AGAGTCTCTAAACAACATGGTAATTTG 57.996 33.333 0.00 0.00 0.00 2.32
4300 13394 8.065473 AGATGGTGATATTAGAGTCATGCTAG 57.935 38.462 0.00 0.00 0.00 3.42
4318 13412 6.741992 TGCTAGTGAGTAATTGTGAATTGG 57.258 37.500 0.00 0.00 32.38 3.16
4341 13435 8.528044 TGGAGAAATACTTGTGTTAAGGTTTT 57.472 30.769 0.00 0.00 0.00 2.43
4342 13436 8.410141 TGGAGAAATACTTGTGTTAAGGTTTTG 58.590 33.333 0.00 0.00 0.00 2.44
4343 13437 8.626526 GGAGAAATACTTGTGTTAAGGTTTTGA 58.373 33.333 0.00 0.00 0.00 2.69
4344 13438 9.665264 GAGAAATACTTGTGTTAAGGTTTTGAG 57.335 33.333 0.00 0.00 0.00 3.02
4345 13439 9.403583 AGAAATACTTGTGTTAAGGTTTTGAGA 57.596 29.630 0.00 0.00 0.00 3.27
4360 13454 9.927081 AAGGTTTTGAGATATAAAGATGGTGAT 57.073 29.630 0.00 0.00 0.00 3.06
4373 13467 7.959658 AAAGATGGTGATATTTGTGATTCCA 57.040 32.000 0.00 0.00 0.00 3.53
4374 13468 6.949352 AGATGGTGATATTTGTGATTCCAC 57.051 37.500 0.00 0.00 43.46 4.02
4385 13479 3.288809 GTGATTCCACACTTTTGCTCC 57.711 47.619 0.00 0.00 42.72 4.70
4386 13480 2.622942 GTGATTCCACACTTTTGCTCCA 59.377 45.455 0.00 0.00 42.72 3.86
4387 13481 3.068024 GTGATTCCACACTTTTGCTCCAA 59.932 43.478 0.00 0.00 42.72 3.53
4388 13482 3.703556 TGATTCCACACTTTTGCTCCAAA 59.296 39.130 0.00 0.00 0.00 3.28
4389 13483 3.799281 TTCCACACTTTTGCTCCAAAG 57.201 42.857 3.04 3.04 34.72 2.77
4390 13484 2.733956 TCCACACTTTTGCTCCAAAGT 58.266 42.857 4.09 4.09 34.72 2.66
4391 13485 3.892284 TCCACACTTTTGCTCCAAAGTA 58.108 40.909 8.37 0.00 34.72 2.24
4392 13486 3.882888 TCCACACTTTTGCTCCAAAGTAG 59.117 43.478 8.37 6.72 34.72 2.57
4393 13487 3.550842 CCACACTTTTGCTCCAAAGTAGC 60.551 47.826 8.37 0.00 40.50 3.58
4397 13491 4.693532 TGCTCCAAAGTAGCACCG 57.306 55.556 0.00 0.00 44.78 4.94
4398 13492 1.752198 TGCTCCAAAGTAGCACCGT 59.248 52.632 0.00 0.00 44.78 4.83
4399 13493 0.602638 TGCTCCAAAGTAGCACCGTG 60.603 55.000 0.00 0.00 44.78 4.94
4400 13494 0.320421 GCTCCAAAGTAGCACCGTGA 60.320 55.000 1.65 0.00 39.83 4.35
4401 13495 1.676014 GCTCCAAAGTAGCACCGTGAT 60.676 52.381 1.65 0.00 39.83 3.06
4402 13496 2.271800 CTCCAAAGTAGCACCGTGATC 58.728 52.381 1.65 0.00 0.00 2.92
4403 13497 1.899814 TCCAAAGTAGCACCGTGATCT 59.100 47.619 1.65 0.00 0.00 2.75
4404 13498 2.301870 TCCAAAGTAGCACCGTGATCTT 59.698 45.455 1.65 0.00 0.00 2.40
4405 13499 2.673368 CCAAAGTAGCACCGTGATCTTC 59.327 50.000 1.65 0.00 0.00 2.87
4406 13500 3.325870 CAAAGTAGCACCGTGATCTTCA 58.674 45.455 1.65 0.00 0.00 3.02
4407 13501 3.895232 AAGTAGCACCGTGATCTTCAT 57.105 42.857 1.65 0.00 0.00 2.57
4408 13502 3.170791 AGTAGCACCGTGATCTTCATG 57.829 47.619 1.65 0.00 33.30 3.07
4409 13503 2.760650 AGTAGCACCGTGATCTTCATGA 59.239 45.455 1.65 0.00 35.46 3.07
4410 13504 2.996249 AGCACCGTGATCTTCATGAT 57.004 45.000 1.65 0.00 35.46 2.45
4411 13505 4.584743 AGTAGCACCGTGATCTTCATGATA 59.415 41.667 1.65 0.00 35.46 2.15
4412 13506 3.987547 AGCACCGTGATCTTCATGATAG 58.012 45.455 1.65 0.00 35.46 2.08
4413 13507 3.638627 AGCACCGTGATCTTCATGATAGA 59.361 43.478 1.65 3.15 35.46 1.98
4414 13508 3.986572 GCACCGTGATCTTCATGATAGAG 59.013 47.826 1.65 0.00 35.46 2.43
4415 13509 4.261783 GCACCGTGATCTTCATGATAGAGA 60.262 45.833 1.65 0.00 35.46 3.10
4416 13510 5.737349 GCACCGTGATCTTCATGATAGAGAA 60.737 44.000 1.65 0.00 35.46 2.87
4417 13511 6.453943 CACCGTGATCTTCATGATAGAGAAT 58.546 40.000 0.00 0.00 35.46 2.40
4418 13512 6.585702 CACCGTGATCTTCATGATAGAGAATC 59.414 42.308 0.00 0.00 35.46 2.52
4419 13513 6.493115 ACCGTGATCTTCATGATAGAGAATCT 59.507 38.462 0.00 0.00 41.75 2.40
4420 13514 7.028962 CCGTGATCTTCATGATAGAGAATCTC 58.971 42.308 1.19 1.19 39.37 2.75
4421 13515 7.028962 CGTGATCTTCATGATAGAGAATCTCC 58.971 42.308 6.65 0.00 39.37 3.71
4422 13516 7.094248 CGTGATCTTCATGATAGAGAATCTCCT 60.094 40.741 6.65 0.00 39.37 3.69
4438 13532 9.995003 GAGAATCTCCTATGTTATCACTTTCAT 57.005 33.333 0.00 0.00 0.00 2.57
4443 13537 9.159254 TCTCCTATGTTATCACTTTCATATGGT 57.841 33.333 2.13 0.00 0.00 3.55
4446 13540 9.155975 CCTATGTTATCACTTTCATATGGTAGC 57.844 37.037 2.13 0.00 0.00 3.58
4447 13541 7.658179 ATGTTATCACTTTCATATGGTAGCG 57.342 36.000 2.13 0.00 0.00 4.26
4448 13542 5.989168 TGTTATCACTTTCATATGGTAGCGG 59.011 40.000 2.13 0.00 0.00 5.52
4449 13543 3.469008 TCACTTTCATATGGTAGCGGG 57.531 47.619 2.13 0.00 0.00 6.13
4450 13544 3.035363 TCACTTTCATATGGTAGCGGGA 58.965 45.455 2.13 0.00 0.00 5.14
4451 13545 3.452990 TCACTTTCATATGGTAGCGGGAA 59.547 43.478 2.13 0.00 0.00 3.97
4452 13546 4.102524 TCACTTTCATATGGTAGCGGGAAT 59.897 41.667 2.13 0.00 0.00 3.01
4453 13547 4.821805 CACTTTCATATGGTAGCGGGAATT 59.178 41.667 2.13 0.00 0.00 2.17
4454 13548 5.299279 CACTTTCATATGGTAGCGGGAATTT 59.701 40.000 2.13 0.00 0.00 1.82
4455 13549 5.891551 ACTTTCATATGGTAGCGGGAATTTT 59.108 36.000 2.13 0.00 0.00 1.82
4456 13550 6.379988 ACTTTCATATGGTAGCGGGAATTTTT 59.620 34.615 2.13 0.00 0.00 1.94
4457 13551 6.385649 TTCATATGGTAGCGGGAATTTTTC 57.614 37.500 2.13 0.00 0.00 2.29
4458 13552 5.441500 TCATATGGTAGCGGGAATTTTTCA 58.558 37.500 2.13 0.00 0.00 2.69
4459 13553 6.068010 TCATATGGTAGCGGGAATTTTTCAT 58.932 36.000 2.13 0.00 0.00 2.57
4460 13554 6.549364 TCATATGGTAGCGGGAATTTTTCATT 59.451 34.615 2.13 0.00 0.00 2.57
4461 13555 7.721842 TCATATGGTAGCGGGAATTTTTCATTA 59.278 33.333 2.13 0.00 0.00 1.90
4462 13556 6.976934 ATGGTAGCGGGAATTTTTCATTAT 57.023 33.333 0.00 0.00 0.00 1.28
4463 13557 9.747898 ATATGGTAGCGGGAATTTTTCATTATA 57.252 29.630 0.00 0.00 0.00 0.98
4464 13558 7.504924 TGGTAGCGGGAATTTTTCATTATAG 57.495 36.000 0.00 0.00 0.00 1.31
4465 13559 7.284074 TGGTAGCGGGAATTTTTCATTATAGA 58.716 34.615 0.00 0.00 0.00 1.98
4466 13560 7.776030 TGGTAGCGGGAATTTTTCATTATAGAA 59.224 33.333 0.00 0.00 0.00 2.10
4467 13561 8.074370 GGTAGCGGGAATTTTTCATTATAGAAC 58.926 37.037 0.00 0.00 0.00 3.01
4468 13562 7.881775 AGCGGGAATTTTTCATTATAGAACT 57.118 32.000 0.00 0.00 0.00 3.01
4469 13563 8.293699 AGCGGGAATTTTTCATTATAGAACTT 57.706 30.769 0.00 0.00 0.00 2.66
4470 13564 8.190784 AGCGGGAATTTTTCATTATAGAACTTG 58.809 33.333 0.00 0.00 0.00 3.16
4471 13565 7.435192 GCGGGAATTTTTCATTATAGAACTTGG 59.565 37.037 0.00 0.00 0.00 3.61
4472 13566 7.435192 CGGGAATTTTTCATTATAGAACTTGGC 59.565 37.037 0.00 0.00 0.00 4.52
4473 13567 8.478066 GGGAATTTTTCATTATAGAACTTGGCT 58.522 33.333 0.00 0.00 0.00 4.75
4474 13568 9.875691 GGAATTTTTCATTATAGAACTTGGCTT 57.124 29.630 0.00 0.00 0.00 4.35
4486 13580 6.759497 AGAACTTGGCTTGTATATTCCAAC 57.241 37.500 0.00 0.00 35.07 3.77
4487 13581 5.354234 AGAACTTGGCTTGTATATTCCAACG 59.646 40.000 0.00 0.00 35.07 4.10
4488 13582 4.839121 ACTTGGCTTGTATATTCCAACGA 58.161 39.130 0.00 0.00 35.07 3.85
4489 13583 5.437060 ACTTGGCTTGTATATTCCAACGAT 58.563 37.500 0.00 0.00 35.07 3.73
4490 13584 5.296780 ACTTGGCTTGTATATTCCAACGATG 59.703 40.000 0.00 0.00 35.07 3.84
4499 13593 4.225497 CCAACGATGGGCTTCCTC 57.775 61.111 3.28 0.00 43.51 3.71
4500 13594 1.299648 CCAACGATGGGCTTCCTCA 59.700 57.895 3.28 0.00 43.51 3.86
4501 13595 0.322456 CCAACGATGGGCTTCCTCAA 60.322 55.000 3.28 0.00 43.51 3.02
4502 13596 1.533625 CAACGATGGGCTTCCTCAAA 58.466 50.000 0.00 0.00 0.00 2.69
4503 13597 2.094675 CAACGATGGGCTTCCTCAAAT 58.905 47.619 0.00 0.00 0.00 2.32
4504 13598 2.493278 CAACGATGGGCTTCCTCAAATT 59.507 45.455 0.00 0.00 0.00 1.82
4505 13599 2.094675 ACGATGGGCTTCCTCAAATTG 58.905 47.619 0.00 0.00 0.00 2.32
4506 13600 1.202336 CGATGGGCTTCCTCAAATTGC 60.202 52.381 0.00 0.00 0.00 3.56
4507 13601 1.137675 GATGGGCTTCCTCAAATTGCC 59.862 52.381 0.00 0.00 42.56 4.52
4509 13603 2.982026 GGCTTCCTCAAATTGCCCT 58.018 52.632 0.00 0.00 37.81 5.19
4510 13604 2.143876 GGCTTCCTCAAATTGCCCTA 57.856 50.000 0.00 0.00 37.81 3.53
4511 13605 2.670939 GGCTTCCTCAAATTGCCCTAT 58.329 47.619 0.00 0.00 37.81 2.57
4512 13606 2.363359 GGCTTCCTCAAATTGCCCTATG 59.637 50.000 0.00 0.00 37.81 2.23
4513 13607 3.026694 GCTTCCTCAAATTGCCCTATGT 58.973 45.455 0.00 0.00 0.00 2.29
4514 13608 3.067320 GCTTCCTCAAATTGCCCTATGTC 59.933 47.826 0.00 0.00 0.00 3.06
4515 13609 4.530875 CTTCCTCAAATTGCCCTATGTCT 58.469 43.478 0.00 0.00 0.00 3.41
4516 13610 4.591321 TCCTCAAATTGCCCTATGTCTT 57.409 40.909 0.00 0.00 0.00 3.01
4517 13611 4.526970 TCCTCAAATTGCCCTATGTCTTC 58.473 43.478 0.00 0.00 0.00 2.87
4518 13612 4.018506 TCCTCAAATTGCCCTATGTCTTCA 60.019 41.667 0.00 0.00 0.00 3.02
4519 13613 4.891756 CCTCAAATTGCCCTATGTCTTCAT 59.108 41.667 0.00 0.00 38.00 2.57
4520 13614 5.221185 CCTCAAATTGCCCTATGTCTTCATG 60.221 44.000 0.00 0.00 35.70 3.07
4521 13615 5.508567 TCAAATTGCCCTATGTCTTCATGA 58.491 37.500 0.00 0.00 35.70 3.07
4522 13616 5.591472 TCAAATTGCCCTATGTCTTCATGAG 59.409 40.000 0.00 0.00 35.70 2.90
4523 13617 2.627515 TGCCCTATGTCTTCATGAGC 57.372 50.000 0.00 0.00 35.70 4.26
4524 13618 1.839354 TGCCCTATGTCTTCATGAGCA 59.161 47.619 0.00 0.00 35.70 4.26
4525 13619 2.239402 TGCCCTATGTCTTCATGAGCAA 59.761 45.455 0.00 0.00 34.36 3.91
4526 13620 2.877168 GCCCTATGTCTTCATGAGCAAG 59.123 50.000 0.00 0.00 35.70 4.01
4527 13621 2.877168 CCCTATGTCTTCATGAGCAAGC 59.123 50.000 0.00 0.00 35.70 4.01
4528 13622 3.538591 CCTATGTCTTCATGAGCAAGCA 58.461 45.455 0.00 0.00 35.70 3.91
4529 13623 3.943381 CCTATGTCTTCATGAGCAAGCAA 59.057 43.478 0.00 0.00 35.70 3.91
4530 13624 4.035324 CCTATGTCTTCATGAGCAAGCAAG 59.965 45.833 0.00 0.00 35.70 4.01
4531 13625 2.854963 TGTCTTCATGAGCAAGCAAGT 58.145 42.857 0.00 0.00 0.00 3.16
4532 13626 3.216800 TGTCTTCATGAGCAAGCAAGTT 58.783 40.909 0.00 0.00 0.00 2.66
4533 13627 3.004002 TGTCTTCATGAGCAAGCAAGTTG 59.996 43.478 0.00 0.00 39.41 3.16
4534 13628 2.555325 TCTTCATGAGCAAGCAAGTTGG 59.445 45.455 4.75 0.00 36.56 3.77
4535 13629 2.275134 TCATGAGCAAGCAAGTTGGA 57.725 45.000 4.75 0.00 36.56 3.53
4536 13630 2.799017 TCATGAGCAAGCAAGTTGGAT 58.201 42.857 4.75 0.00 36.56 3.41
4537 13631 2.490509 TCATGAGCAAGCAAGTTGGATG 59.509 45.455 4.75 0.00 36.56 3.51
4538 13632 0.599558 TGAGCAAGCAAGTTGGATGC 59.400 50.000 4.75 0.00 44.15 3.91
4539 13633 0.599558 GAGCAAGCAAGTTGGATGCA 59.400 50.000 4.75 0.00 46.22 3.96
4540 13634 0.316204 AGCAAGCAAGTTGGATGCAC 59.684 50.000 4.75 0.00 46.22 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 2.181954 CCTATCAGAGGCATTCAGGC 57.818 55.000 0.00 0.00 38.96 4.85
47 48 6.419484 AACTTCCCAAAAAGATTTCGGAAT 57.581 33.333 0.00 0.00 42.49 3.01
50 51 4.211164 GCAAACTTCCCAAAAAGATTTCGG 59.789 41.667 0.00 0.00 0.00 4.30
60 61 3.243359 AGATCAGGCAAACTTCCCAAA 57.757 42.857 0.00 0.00 0.00 3.28
65 66 5.772521 TGCTTTTTAGATCAGGCAAACTTC 58.227 37.500 0.00 0.00 0.00 3.01
98 99 4.127171 GTCTTCTGCTGGTCAAACTGTAA 58.873 43.478 0.00 0.00 0.00 2.41
113 114 1.337728 TGTATGTGCACGGGTCTTCTG 60.338 52.381 13.13 0.00 0.00 3.02
135 136 9.778741 TTGTCAAGATTTTCTTCATGTACTACT 57.221 29.630 0.00 0.00 33.78 2.57
171 178 3.550678 GGATTACTGCTTTACCGAACTCG 59.449 47.826 0.00 0.00 39.44 4.18
180 187 6.229936 ACTGTATTCGGGATTACTGCTTTA 57.770 37.500 7.23 0.00 0.00 1.85
195 202 8.600449 AGTATCCACTAGTACGTACTGTATTC 57.400 38.462 33.23 17.94 37.10 1.75
200 207 7.170658 GGAAGTAGTATCCACTAGTACGTACTG 59.829 44.444 33.23 24.68 39.54 2.74
202 209 7.213678 AGGAAGTAGTATCCACTAGTACGTAC 58.786 42.308 18.10 18.10 39.54 3.67
247 254 4.332819 CGGATTCTGGTTTTCAGGACATAC 59.667 45.833 0.00 0.00 43.53 2.39
252 259 1.702957 ACCGGATTCTGGTTTTCAGGA 59.297 47.619 9.46 0.00 43.53 3.86
269 276 5.176774 GGAAGCCAACTTTCAAATTTTACCG 59.823 40.000 0.00 0.00 35.82 4.02
294 302 2.676121 TTGCCCATCCAACGCTGG 60.676 61.111 0.00 0.00 45.08 4.85
367 391 1.414550 TGATTTCACACGGTCTCACCA 59.585 47.619 0.00 0.00 38.47 4.17
426 453 3.065655 CAAGAACTCAGCCAGTCAAGAG 58.934 50.000 0.00 0.00 32.30 2.85
428 455 3.065655 CTCAAGAACTCAGCCAGTCAAG 58.934 50.000 0.00 0.00 32.30 3.02
429 456 2.700371 TCTCAAGAACTCAGCCAGTCAA 59.300 45.455 0.00 0.00 32.30 3.18
430 457 2.319844 TCTCAAGAACTCAGCCAGTCA 58.680 47.619 0.00 0.00 32.30 3.41
440 470 3.306364 CCACGGACTCAATCTCAAGAACT 60.306 47.826 0.00 0.00 0.00 3.01
445 475 1.550524 CCTCCACGGACTCAATCTCAA 59.449 52.381 0.00 0.00 33.16 3.02
452 486 1.533033 TTCAGCCTCCACGGACTCA 60.533 57.895 0.00 0.00 33.16 3.41
455 489 2.047179 GGTTCAGCCTCCACGGAC 60.047 66.667 0.00 0.00 33.16 4.79
459 493 1.340405 ACATCATGGTTCAGCCTCCAC 60.340 52.381 0.00 0.00 36.50 4.02
488 530 3.692690 TGTTAAGCCTTTGGTATGGGTC 58.307 45.455 0.00 0.00 33.09 4.46
491 533 6.601613 TCTTGTATGTTAAGCCTTTGGTATGG 59.398 38.462 0.00 0.00 0.00 2.74
512 554 2.496070 TCGGGTAGGAGAACATGTCTTG 59.504 50.000 0.00 0.00 36.41 3.02
524 566 2.498481 ACATTTGTTCGATCGGGTAGGA 59.502 45.455 16.41 0.00 0.00 2.94
531 573 4.100529 ACCGTACTACATTTGTTCGATCG 58.899 43.478 9.36 9.36 31.53 3.69
540 582 6.054295 TGTTTGGTTGTACCGTACTACATTT 58.946 36.000 20.20 0.00 42.58 2.32
551 593 6.385649 TCTGAAATCTTGTTTGGTTGTACC 57.614 37.500 0.00 0.00 39.22 3.34
560 602 9.657419 AAACTGATTTGTTCTGAAATCTTGTTT 57.343 25.926 15.99 15.99 41.21 2.83
605 648 1.826720 TCCATTAGTGTCCGGTGTACC 59.173 52.381 0.00 0.00 0.00 3.34
670 766 2.029470 GGTAAGCGAGAGGATGATCCAG 60.029 54.545 14.90 3.24 39.61 3.86
784 932 1.513622 GACTCGGCTTGTCCTCCTC 59.486 63.158 0.00 0.00 0.00 3.71
908 1225 0.460311 CTTATATAGGCGAGGGGCGG 59.540 60.000 0.00 0.00 44.92 6.13
909 1226 0.460311 CCTTATATAGGCGAGGGGCG 59.540 60.000 0.00 0.00 44.92 6.13
910 1227 0.831307 CCCTTATATAGGCGAGGGGC 59.169 60.000 8.81 0.00 44.21 5.80
961 1278 0.179018 GTTCTGGGCAAGTGAGGTGT 60.179 55.000 0.00 0.00 0.00 4.16
1023 1362 1.342819 GAACTGAGAGCAGAGTGGTGT 59.657 52.381 0.00 0.00 45.17 4.16
1104 1450 0.319040 GTCGAAGCACAGCTCAGACA 60.319 55.000 16.50 0.00 41.27 3.41
1110 1456 1.181741 TGGAGAGTCGAAGCACAGCT 61.182 55.000 0.00 0.00 42.56 4.24
1114 1460 0.455295 CGAGTGGAGAGTCGAAGCAC 60.455 60.000 0.00 0.00 46.30 4.40
1121 1470 1.065709 AGAGAGACCGAGTGGAGAGTC 60.066 57.143 0.00 0.00 39.21 3.36
1148 1499 0.668535 AAAAAGAACACCGGAGCAGC 59.331 50.000 9.46 0.00 0.00 5.25
1193 1561 3.181465 ACACAGAAGCAGATAATACCCCG 60.181 47.826 0.00 0.00 0.00 5.73
1218 1586 0.178846 TCAAATCCCCAGACCCCTCA 60.179 55.000 0.00 0.00 0.00 3.86
1225 1593 1.991813 TCACACCATCAAATCCCCAGA 59.008 47.619 0.00 0.00 0.00 3.86
1258 1629 2.746277 AATCAACCGGCGACCTGC 60.746 61.111 9.30 0.00 45.38 4.85
1259 1630 1.361668 CTGAATCAACCGGCGACCTG 61.362 60.000 9.30 2.03 0.00 4.00
1260 1631 1.079127 CTGAATCAACCGGCGACCT 60.079 57.895 9.30 0.00 0.00 3.85
1261 1632 1.079405 TCTGAATCAACCGGCGACC 60.079 57.895 9.30 0.00 0.00 4.79
1262 1633 0.108804 TCTCTGAATCAACCGGCGAC 60.109 55.000 9.30 0.00 0.00 5.19
1263 1634 0.173481 CTCTCTGAATCAACCGGCGA 59.827 55.000 9.30 0.00 0.00 5.54
1264 1635 0.807667 CCTCTCTGAATCAACCGGCG 60.808 60.000 0.00 0.00 0.00 6.46
1265 1636 1.092345 GCCTCTCTGAATCAACCGGC 61.092 60.000 0.00 0.00 0.00 6.13
1266 1637 0.807667 CGCCTCTCTGAATCAACCGG 60.808 60.000 0.00 0.00 0.00 5.28
1267 1638 0.108615 ACGCCTCTCTGAATCAACCG 60.109 55.000 0.00 0.00 0.00 4.44
1268 1639 1.646189 GACGCCTCTCTGAATCAACC 58.354 55.000 0.00 0.00 0.00 3.77
1269 1640 1.272781 CGACGCCTCTCTGAATCAAC 58.727 55.000 0.00 0.00 0.00 3.18
1363 4176 4.749310 CCGCGCACTCAAGCTCCT 62.749 66.667 8.75 0.00 0.00 3.69
1562 4384 4.402155 TGTGACAATTTCTGTGCTTCCTTT 59.598 37.500 0.00 0.00 38.84 3.11
1592 4422 2.125350 CCTGCTCTGCTTCCGTCC 60.125 66.667 0.00 0.00 0.00 4.79
1600 4716 2.820037 GGCGTTACCCTGCTCTGC 60.820 66.667 0.00 0.00 0.00 4.26
1619 4735 1.809619 CATGCCGGATTCACGACGT 60.810 57.895 5.05 0.00 35.47 4.34
1635 4760 3.067106 CTGCAACGACAAGTAGAACCAT 58.933 45.455 0.00 0.00 0.00 3.55
1774 4918 1.517257 GGAGAGCACCACGACATCG 60.517 63.158 0.00 0.00 46.33 3.84
1778 4922 3.628280 GACCGGAGAGCACCACGAC 62.628 68.421 9.46 0.00 0.00 4.34
1817 4961 0.102120 CTGGAGAGCACCACGAGATC 59.898 60.000 0.00 0.00 35.91 2.75
1818 4962 0.613292 ACTGGAGAGCACCACGAGAT 60.613 55.000 0.00 0.00 35.91 2.75
1819 4963 1.228583 ACTGGAGAGCACCACGAGA 60.229 57.895 0.00 0.00 35.91 4.04
1820 4964 1.214062 GACTGGAGAGCACCACGAG 59.786 63.158 0.00 0.00 35.91 4.18
1821 4965 2.626780 CGACTGGAGAGCACCACGA 61.627 63.158 0.00 0.00 35.91 4.35
1822 4966 2.126307 CGACTGGAGAGCACCACG 60.126 66.667 0.00 0.00 35.91 4.94
1823 4967 0.667792 GTTCGACTGGAGAGCACCAC 60.668 60.000 0.00 0.00 35.91 4.16
1824 4968 1.666011 GTTCGACTGGAGAGCACCA 59.334 57.895 0.00 0.00 38.33 4.17
1825 4969 1.079750 GGTTCGACTGGAGAGCACC 60.080 63.158 0.00 0.00 0.00 5.01
1826 4970 0.389166 CAGGTTCGACTGGAGAGCAC 60.389 60.000 0.00 0.00 34.84 4.40
1827 4971 0.827925 ACAGGTTCGACTGGAGAGCA 60.828 55.000 7.82 0.00 42.75 4.26
1828 4972 0.109039 GACAGGTTCGACTGGAGAGC 60.109 60.000 7.82 0.00 42.75 4.09
1829 4973 1.201181 CAGACAGGTTCGACTGGAGAG 59.799 57.143 7.82 0.00 42.75 3.20
1830 4974 1.248486 CAGACAGGTTCGACTGGAGA 58.752 55.000 7.82 0.00 42.75 3.71
1831 4975 0.962489 ACAGACAGGTTCGACTGGAG 59.038 55.000 7.82 0.53 42.75 3.86
1832 4976 0.959553 GACAGACAGGTTCGACTGGA 59.040 55.000 7.82 0.00 42.75 3.86
1833 4977 0.962489 AGACAGACAGGTTCGACTGG 59.038 55.000 7.82 0.00 42.75 4.00
1834 4978 1.400371 CGAGACAGACAGGTTCGACTG 60.400 57.143 1.70 1.70 44.03 3.51
1835 4979 0.875728 CGAGACAGACAGGTTCGACT 59.124 55.000 0.00 0.00 33.38 4.18
1836 4980 0.592148 ACGAGACAGACAGGTTCGAC 59.408 55.000 0.00 0.00 35.42 4.20
1837 4981 0.591659 CACGAGACAGACAGGTTCGA 59.408 55.000 0.00 0.00 35.42 3.71
1838 4982 0.387367 CCACGAGACAGACAGGTTCG 60.387 60.000 0.00 0.00 37.31 3.95
1839 4983 0.674534 ACCACGAGACAGACAGGTTC 59.325 55.000 0.00 0.00 0.00 3.62
1840 4984 0.389391 CACCACGAGACAGACAGGTT 59.611 55.000 0.00 0.00 0.00 3.50
1841 4985 0.467474 TCACCACGAGACAGACAGGT 60.467 55.000 0.00 0.00 0.00 4.00
1842 4986 0.891373 ATCACCACGAGACAGACAGG 59.109 55.000 0.00 0.00 0.00 4.00
1843 4987 1.815613 AGATCACCACGAGACAGACAG 59.184 52.381 0.00 0.00 0.00 3.51
1844 4988 1.813178 GAGATCACCACGAGACAGACA 59.187 52.381 0.00 0.00 0.00 3.41
1845 4989 1.202087 CGAGATCACCACGAGACAGAC 60.202 57.143 0.00 0.00 0.00 3.51
1846 4990 1.087501 CGAGATCACCACGAGACAGA 58.912 55.000 0.00 0.00 0.00 3.41
1847 4991 0.805614 ACGAGATCACCACGAGACAG 59.194 55.000 0.00 0.00 0.00 3.51
1848 4992 0.521735 CACGAGATCACCACGAGACA 59.478 55.000 0.00 0.00 0.00 3.41
1849 4993 0.179161 CCACGAGATCACCACGAGAC 60.179 60.000 0.00 0.00 0.00 3.36
1850 4994 0.608308 ACCACGAGATCACCACGAGA 60.608 55.000 0.00 0.00 0.00 4.04
1851 4995 0.456824 CACCACGAGATCACCACGAG 60.457 60.000 0.00 0.00 0.00 4.18
1852 4996 1.584495 CACCACGAGATCACCACGA 59.416 57.895 0.00 0.00 0.00 4.35
1853 4997 2.094659 GCACCACGAGATCACCACG 61.095 63.158 0.00 0.00 0.00 4.94
1854 4998 0.737715 GAGCACCACGAGATCACCAC 60.738 60.000 0.00 0.00 0.00 4.16
1855 4999 1.591703 GAGCACCACGAGATCACCA 59.408 57.895 0.00 0.00 0.00 4.17
1972 5369 3.244078 TGCAATCGACAGTTTCCAGTAGT 60.244 43.478 0.00 0.00 0.00 2.73
1974 5371 3.394674 TGCAATCGACAGTTTCCAGTA 57.605 42.857 0.00 0.00 0.00 2.74
1975 5372 2.254546 TGCAATCGACAGTTTCCAGT 57.745 45.000 0.00 0.00 0.00 4.00
2097 5507 1.478510 TCTGAAGAAAGAGGCGCCTAG 59.521 52.381 32.97 20.71 0.00 3.02
2123 5533 8.474025 ACAGATCATCGATCTCTATTTTATCCC 58.526 37.037 3.50 0.00 45.03 3.85
2162 5577 9.935682 CTGCATTTCTATTTTCAACGTATGTAT 57.064 29.630 0.00 0.00 0.00 2.29
2328 5745 8.386606 CAAACTAAAACAGCTTGCAAAAACATA 58.613 29.630 0.00 0.00 0.00 2.29
2363 5780 5.222484 ACTCCCTCGGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
2392 5809 7.582667 AACAGTGGTAAACAGATTTAAAGCT 57.417 32.000 0.00 0.00 32.04 3.74
2520 6448 3.058293 TGTCAACAAAAAGCTATCTGCCG 60.058 43.478 0.00 0.00 44.23 5.69
2673 6606 4.311816 TCCCCGTTTCTTATCATCGTAC 57.688 45.455 0.00 0.00 0.00 3.67
2865 8059 5.357878 GCAATATGAAGACATGAGGGTTCAA 59.642 40.000 0.00 0.00 36.78 2.69
2907 8101 2.642171 ACACCAATAGGGAGTCCTGA 57.358 50.000 9.58 0.00 44.61 3.86
2937 8131 2.807967 CAAGCAGTTCAAGATCCGTTGA 59.192 45.455 0.00 0.00 34.56 3.18
3267 8468 4.033587 TCACAAACTTTGTAGTCGTTGCTC 59.966 41.667 6.84 0.00 43.23 4.26
3282 8483 6.541641 GCCATCTGAGATTCTTATCACAAACT 59.458 38.462 0.00 0.00 32.16 2.66
3292 8493 4.019501 AGTCTTGTGCCATCTGAGATTCTT 60.020 41.667 0.00 0.00 0.00 2.52
3474 10130 3.570638 CATGAAGCTCCGCCGCTG 61.571 66.667 0.00 0.00 40.79 5.18
3478 10134 4.883354 CCCCCATGAAGCTCCGCC 62.883 72.222 0.00 0.00 0.00 6.13
3482 10138 2.054453 GTTGGCCCCCATGAAGCTC 61.054 63.158 0.00 0.00 31.53 4.09
3483 10139 2.037847 GTTGGCCCCCATGAAGCT 59.962 61.111 0.00 0.00 31.53 3.74
3484 10140 3.076916 GGTTGGCCCCCATGAAGC 61.077 66.667 0.00 0.00 31.53 3.86
3486 10142 2.444696 CAGGTTGGCCCCCATGAA 59.555 61.111 10.93 0.00 31.53 2.57
3487 10143 3.671410 CCAGGTTGGCCCCCATGA 61.671 66.667 10.93 0.00 31.53 3.07
3488 10144 4.783501 CCCAGGTTGGCCCCCATG 62.784 72.222 10.93 4.05 35.79 3.66
3515 10171 1.977129 TGAATTTTTCTTGGGCTGGGG 59.023 47.619 0.00 0.00 0.00 4.96
3516 10172 2.289631 GGTGAATTTTTCTTGGGCTGGG 60.290 50.000 0.00 0.00 0.00 4.45
3517 10173 2.634453 AGGTGAATTTTTCTTGGGCTGG 59.366 45.455 0.00 0.00 0.00 4.85
3518 10174 5.467035 TTAGGTGAATTTTTCTTGGGCTG 57.533 39.130 0.00 0.00 0.00 4.85
3519 10175 6.723977 TGTATTAGGTGAATTTTTCTTGGGCT 59.276 34.615 0.00 0.00 0.00 5.19
3521 10177 7.027161 CGTGTATTAGGTGAATTTTTCTTGGG 58.973 38.462 0.00 0.00 0.00 4.12
3522 10178 7.590279 ACGTGTATTAGGTGAATTTTTCTTGG 58.410 34.615 0.00 0.00 0.00 3.61
3525 10181 9.498176 ACTAACGTGTATTAGGTGAATTTTTCT 57.502 29.630 0.00 0.00 36.62 2.52
3530 10186 9.887406 CAAAAACTAACGTGTATTAGGTGAATT 57.113 29.630 0.00 0.00 36.62 2.17
3531 10187 9.059260 ACAAAAACTAACGTGTATTAGGTGAAT 57.941 29.630 0.00 0.00 36.62 2.57
3533 10189 7.518689 GCACAAAAACTAACGTGTATTAGGTGA 60.519 37.037 0.00 0.00 36.62 4.02
3534 10190 6.575942 GCACAAAAACTAACGTGTATTAGGTG 59.424 38.462 0.00 0.00 36.62 4.00
3536 10192 6.795114 CAGCACAAAAACTAACGTGTATTAGG 59.205 38.462 0.00 0.00 36.62 2.69
3537 10193 6.795114 CCAGCACAAAAACTAACGTGTATTAG 59.205 38.462 0.00 0.00 38.03 1.73
3538 10194 6.482641 TCCAGCACAAAAACTAACGTGTATTA 59.517 34.615 0.00 0.00 0.00 0.98
3540 10196 4.817464 TCCAGCACAAAAACTAACGTGTAT 59.183 37.500 0.00 0.00 0.00 2.29
3541 10197 4.190001 TCCAGCACAAAAACTAACGTGTA 58.810 39.130 0.00 0.00 0.00 2.90
3542 10198 3.011119 TCCAGCACAAAAACTAACGTGT 58.989 40.909 0.00 0.00 0.00 4.49
3543 10199 3.684103 TCCAGCACAAAAACTAACGTG 57.316 42.857 0.00 0.00 0.00 4.49
3544 10200 3.630312 ACATCCAGCACAAAAACTAACGT 59.370 39.130 0.00 0.00 0.00 3.99
3545 10201 4.223320 ACATCCAGCACAAAAACTAACG 57.777 40.909 0.00 0.00 0.00 3.18
3546 10202 5.587289 TGAACATCCAGCACAAAAACTAAC 58.413 37.500 0.00 0.00 0.00 2.34
3547 10203 5.359576 ACTGAACATCCAGCACAAAAACTAA 59.640 36.000 0.00 0.00 37.68 2.24
3549 10205 3.701040 ACTGAACATCCAGCACAAAAACT 59.299 39.130 0.00 0.00 37.68 2.66
3550 10206 4.045636 ACTGAACATCCAGCACAAAAAC 57.954 40.909 0.00 0.00 37.68 2.43
3551 10207 5.843673 TTACTGAACATCCAGCACAAAAA 57.156 34.783 0.00 0.00 37.68 1.94
3552 10208 5.843673 TTTACTGAACATCCAGCACAAAA 57.156 34.783 0.00 0.00 37.68 2.44
3553 10209 5.843673 TTTTACTGAACATCCAGCACAAA 57.156 34.783 0.00 0.00 37.68 2.83
3554 10210 5.126222 TGTTTTTACTGAACATCCAGCACAA 59.874 36.000 0.00 0.00 37.68 3.33
3555 10211 4.642437 TGTTTTTACTGAACATCCAGCACA 59.358 37.500 0.00 0.00 37.68 4.57
3556 10212 5.181690 TGTTTTTACTGAACATCCAGCAC 57.818 39.130 0.00 0.00 37.68 4.40
3558 10214 4.798574 CCTGTTTTTACTGAACATCCAGC 58.201 43.478 0.00 0.00 36.51 4.85
3559 10215 4.520492 AGCCTGTTTTTACTGAACATCCAG 59.480 41.667 0.00 0.00 36.51 3.86
3561 10217 6.569179 TTAGCCTGTTTTTACTGAACATCC 57.431 37.500 0.00 0.00 36.51 3.51
3562 10218 6.861572 GGTTTAGCCTGTTTTTACTGAACATC 59.138 38.462 0.00 0.00 36.51 3.06
3563 10219 6.745116 GGTTTAGCCTGTTTTTACTGAACAT 58.255 36.000 0.00 0.00 36.51 2.71
3564 10220 6.139048 GGTTTAGCCTGTTTTTACTGAACA 57.861 37.500 0.00 0.00 35.81 3.18
3579 10235 3.130516 GGGCAAAACTATGAGGTTTAGCC 59.869 47.826 15.96 15.96 42.74 3.93
3580 10236 3.130516 GGGGCAAAACTATGAGGTTTAGC 59.869 47.826 0.00 0.00 31.70 3.09
3581 10237 4.600062 AGGGGCAAAACTATGAGGTTTAG 58.400 43.478 0.00 0.00 31.70 1.85
3582 10238 4.569015 GGAGGGGCAAAACTATGAGGTTTA 60.569 45.833 0.00 0.00 31.70 2.01
3583 10239 3.431415 GAGGGGCAAAACTATGAGGTTT 58.569 45.455 0.00 0.00 35.04 3.27
3584 10240 2.291605 GGAGGGGCAAAACTATGAGGTT 60.292 50.000 0.00 0.00 0.00 3.50
3585 10241 1.285078 GGAGGGGCAAAACTATGAGGT 59.715 52.381 0.00 0.00 0.00 3.85
3586 10242 1.566231 AGGAGGGGCAAAACTATGAGG 59.434 52.381 0.00 0.00 0.00 3.86
3587 10243 3.019564 CAAGGAGGGGCAAAACTATGAG 58.980 50.000 0.00 0.00 0.00 2.90
3588 10244 2.291540 CCAAGGAGGGGCAAAACTATGA 60.292 50.000 0.00 0.00 0.00 2.15
3589 10245 2.102578 CCAAGGAGGGGCAAAACTATG 58.897 52.381 0.00 0.00 0.00 2.23
3590 10246 2.532250 CCAAGGAGGGGCAAAACTAT 57.468 50.000 0.00 0.00 0.00 2.12
3592 10248 4.952482 CCAAGGAGGGGCAAAACT 57.048 55.556 0.00 0.00 0.00 2.66
3599 10255 2.042639 CAATGGGCCAAGGAGGGG 60.043 66.667 11.89 0.00 38.09 4.79
3600 10256 2.761213 GCAATGGGCCAAGGAGGG 60.761 66.667 11.89 0.00 38.09 4.30
3609 10265 2.284552 TTTGGAGGGGCAATGGGC 60.285 61.111 0.00 0.00 43.74 5.36
3610 10266 0.031817 ATCTTTGGAGGGGCAATGGG 60.032 55.000 0.00 0.00 0.00 4.00
3611 10267 1.870064 AATCTTTGGAGGGGCAATGG 58.130 50.000 0.00 0.00 0.00 3.16
3612 10268 2.961062 CCTAATCTTTGGAGGGGCAATG 59.039 50.000 0.00 0.00 0.00 2.82
3613 10269 2.690936 GCCTAATCTTTGGAGGGGCAAT 60.691 50.000 0.00 0.00 35.74 3.56
3614 10270 1.341976 GCCTAATCTTTGGAGGGGCAA 60.342 52.381 0.00 0.00 35.74 4.52
3615 10271 0.258774 GCCTAATCTTTGGAGGGGCA 59.741 55.000 0.00 0.00 35.74 5.36
3616 10272 0.468214 GGCCTAATCTTTGGAGGGGC 60.468 60.000 0.00 0.00 35.30 5.80
3617 10273 0.186143 GGGCCTAATCTTTGGAGGGG 59.814 60.000 0.84 0.00 0.00 4.79
3618 10274 0.926293 TGGGCCTAATCTTTGGAGGG 59.074 55.000 4.53 0.00 0.00 4.30
3619 10275 2.659428 CTTGGGCCTAATCTTTGGAGG 58.341 52.381 0.33 0.00 0.00 4.30
3620 10276 2.027385 GCTTGGGCCTAATCTTTGGAG 58.973 52.381 0.33 0.00 0.00 3.86
3621 10277 1.640670 AGCTTGGGCCTAATCTTTGGA 59.359 47.619 0.33 0.00 39.73 3.53
3622 10278 2.027385 GAGCTTGGGCCTAATCTTTGG 58.973 52.381 6.66 0.00 39.73 3.28
3623 10279 2.027385 GGAGCTTGGGCCTAATCTTTG 58.973 52.381 6.66 0.00 39.73 2.77
3624 10280 1.408822 CGGAGCTTGGGCCTAATCTTT 60.409 52.381 6.66 0.00 39.73 2.52
3625 10281 0.181350 CGGAGCTTGGGCCTAATCTT 59.819 55.000 6.66 0.00 39.73 2.40
3626 10282 1.832912 CGGAGCTTGGGCCTAATCT 59.167 57.895 4.70 4.70 39.73 2.40
3627 10283 4.464262 CGGAGCTTGGGCCTAATC 57.536 61.111 0.33 0.00 39.73 1.75
3640 10296 0.033504 AGTACAACACAGTGGCGGAG 59.966 55.000 5.31 0.00 0.00 4.63
3641 10297 1.330234 TAGTACAACACAGTGGCGGA 58.670 50.000 5.31 0.00 0.00 5.54
3642 10298 2.380084 ATAGTACAACACAGTGGCGG 57.620 50.000 5.31 0.00 0.00 6.13
3643 10299 4.740205 CAGATATAGTACAACACAGTGGCG 59.260 45.833 5.31 0.00 0.00 5.69
3644 10300 5.520288 CACAGATATAGTACAACACAGTGGC 59.480 44.000 5.31 0.00 0.00 5.01
3645 10301 6.631016 ACACAGATATAGTACAACACAGTGG 58.369 40.000 5.31 0.00 0.00 4.00
3646 10302 9.237846 CATACACAGATATAGTACAACACAGTG 57.762 37.037 0.00 0.00 0.00 3.66
3647 10303 8.967918 ACATACACAGATATAGTACAACACAGT 58.032 33.333 0.00 0.00 0.00 3.55
3903 12997 8.927721 TGTTGCAACCTAAAAAGTAAAGAAAAC 58.072 29.630 26.14 0.00 0.00 2.43
3912 13006 7.500141 AGAATGATTGTTGCAACCTAAAAAGT 58.500 30.769 26.14 6.91 0.00 2.66
3921 13015 7.323656 GTGTACAGTAAGAATGATTGTTGCAAC 59.676 37.037 22.83 22.83 0.00 4.17
3935 13029 6.462487 CCTCTCAAAAGGTGTGTACAGTAAGA 60.462 42.308 0.00 0.00 0.00 2.10
3949 13043 0.250295 TGCGTGTCCCTCTCAAAAGG 60.250 55.000 0.00 0.00 36.08 3.11
3961 13055 8.498358 TCTAATAAATCATGATTCATGCGTGTC 58.502 33.333 20.95 0.00 41.18 3.67
3991 13085 8.886719 CAAAAGATATGAGTGAAGCACATAGAA 58.113 33.333 0.00 0.00 36.74 2.10
3996 13090 5.122869 GCTCAAAAGATATGAGTGAAGCACA 59.877 40.000 5.54 0.00 44.88 4.57
4007 13101 9.017669 GCAAAATTGTCTAGCTCAAAAGATATG 57.982 33.333 0.00 0.00 0.00 1.78
4024 13118 4.823989 AGTGAAGCACTAGAGCAAAATTGT 59.176 37.500 14.80 0.00 43.46 2.71
4038 13132 8.883731 TGCTCTAAAAAGATATAAGTGAAGCAC 58.116 33.333 0.00 0.00 34.10 4.40
4065 13159 7.925043 TTTCTATAAAATAAAGTCACCGCCA 57.075 32.000 0.00 0.00 0.00 5.69
4171 13265 7.683578 TCCTCTTGGATGTCCATCATATTAAG 58.316 38.462 9.34 5.71 46.97 1.85
4172 13266 7.293299 ACTCCTCTTGGATGTCCATCATATTAA 59.707 37.037 9.34 0.00 46.97 1.40
4182 13276 9.847224 TTTTTATTATACTCCTCTTGGATGTCC 57.153 33.333 0.00 0.00 42.29 4.02
4222 13316 9.283768 TCAAACTTCTCTTAGTATTCAATGCAA 57.716 29.630 0.00 0.00 0.00 4.08
4287 13381 7.339466 TCACAATTACTCACTAGCATGACTCTA 59.661 37.037 0.00 0.00 0.00 2.43
4300 13394 9.774742 GTATTTCTCCAATTCACAATTACTCAC 57.225 33.333 0.00 0.00 0.00 3.51
4318 13412 9.665264 CTCAAAACCTTAACACAAGTATTTCTC 57.335 33.333 0.00 0.00 0.00 2.87
4347 13441 9.645128 TGGAATCACAAATATCACCATCTTTAT 57.355 29.630 0.00 0.00 0.00 1.40
4348 13442 8.902806 GTGGAATCACAAATATCACCATCTTTA 58.097 33.333 0.00 0.00 43.13 1.85
4349 13443 7.775120 GTGGAATCACAAATATCACCATCTTT 58.225 34.615 0.00 0.00 43.13 2.52
4350 13444 7.338800 GTGGAATCACAAATATCACCATCTT 57.661 36.000 0.00 0.00 43.13 2.40
4351 13445 6.949352 GTGGAATCACAAATATCACCATCT 57.051 37.500 0.00 0.00 43.13 2.90
4362 13456 9.623281 TTTGGAGCAAAAGTGTGGAATCACAAA 62.623 37.037 0.48 0.00 41.49 2.83
4363 13457 8.250631 TTTGGAGCAAAAGTGTGGAATCACAA 62.251 38.462 0.48 0.00 41.49 3.33
4364 13458 6.848277 TTTGGAGCAAAAGTGTGGAATCACA 61.848 40.000 0.00 0.00 39.63 3.58
4365 13459 2.622942 TGGAGCAAAAGTGTGGAATCAC 59.377 45.455 0.00 0.00 43.87 3.06
4366 13460 2.942804 TGGAGCAAAAGTGTGGAATCA 58.057 42.857 0.00 0.00 0.00 2.57
4367 13461 4.202151 ACTTTGGAGCAAAAGTGTGGAATC 60.202 41.667 10.34 0.00 46.16 2.52
4368 13462 3.706086 ACTTTGGAGCAAAAGTGTGGAAT 59.294 39.130 10.34 0.00 46.16 3.01
4369 13463 3.096092 ACTTTGGAGCAAAAGTGTGGAA 58.904 40.909 10.34 0.00 46.16 3.53
4370 13464 2.733956 ACTTTGGAGCAAAAGTGTGGA 58.266 42.857 10.34 0.00 46.16 4.02
4381 13475 0.320421 TCACGGTGCTACTTTGGAGC 60.320 55.000 2.51 0.00 40.53 4.70
4382 13476 2.093973 AGATCACGGTGCTACTTTGGAG 60.094 50.000 2.51 0.00 0.00 3.86
4383 13477 1.899814 AGATCACGGTGCTACTTTGGA 59.100 47.619 2.51 0.00 0.00 3.53
4384 13478 2.386661 AGATCACGGTGCTACTTTGG 57.613 50.000 2.51 0.00 0.00 3.28
4385 13479 3.325870 TGAAGATCACGGTGCTACTTTG 58.674 45.455 2.51 0.00 0.00 2.77
4386 13480 3.678056 TGAAGATCACGGTGCTACTTT 57.322 42.857 2.51 0.00 0.00 2.66
4387 13481 3.195610 TCATGAAGATCACGGTGCTACTT 59.804 43.478 2.51 8.38 0.00 2.24
4388 13482 2.760650 TCATGAAGATCACGGTGCTACT 59.239 45.455 2.51 0.00 0.00 2.57
4389 13483 3.165058 TCATGAAGATCACGGTGCTAC 57.835 47.619 2.51 0.00 0.00 3.58
4390 13484 4.827284 TCTATCATGAAGATCACGGTGCTA 59.173 41.667 0.00 0.00 38.19 3.49
4391 13485 2.996249 ATCATGAAGATCACGGTGCT 57.004 45.000 0.00 0.00 28.20 4.40
4392 13486 3.982475 TCTATCATGAAGATCACGGTGC 58.018 45.455 0.00 0.00 38.19 5.01
4393 13487 5.444663 TCTCTATCATGAAGATCACGGTG 57.555 43.478 0.00 0.56 38.19 4.94
4394 13488 6.493115 AGATTCTCTATCATGAAGATCACGGT 59.507 38.462 0.00 0.00 38.19 4.83
4395 13489 6.923012 AGATTCTCTATCATGAAGATCACGG 58.077 40.000 0.00 0.00 38.19 4.94
4396 13490 7.028962 GGAGATTCTCTATCATGAAGATCACG 58.971 42.308 13.22 0.00 38.19 4.35
4397 13491 8.125978 AGGAGATTCTCTATCATGAAGATCAC 57.874 38.462 13.22 0.00 38.19 3.06
4398 13492 9.994017 ATAGGAGATTCTCTATCATGAAGATCA 57.006 33.333 13.22 0.00 38.19 2.92
4400 13494 9.772605 ACATAGGAGATTCTCTATCATGAAGAT 57.227 33.333 13.22 0.00 40.86 2.40
4401 13495 9.599056 AACATAGGAGATTCTCTATCATGAAGA 57.401 33.333 13.22 3.56 35.59 2.87
4411 13505 9.206690 TGAAAGTGATAACATAGGAGATTCTCT 57.793 33.333 13.22 2.84 0.00 3.10
4412 13506 9.995003 ATGAAAGTGATAACATAGGAGATTCTC 57.005 33.333 5.03 5.03 0.00 2.87
4417 13511 9.159254 ACCATATGAAAGTGATAACATAGGAGA 57.841 33.333 3.65 0.00 31.56 3.71
4420 13514 9.155975 GCTACCATATGAAAGTGATAACATAGG 57.844 37.037 3.65 0.00 0.00 2.57
4421 13515 8.864024 CGCTACCATATGAAAGTGATAACATAG 58.136 37.037 3.65 0.00 0.00 2.23
4422 13516 7.817478 CCGCTACCATATGAAAGTGATAACATA 59.183 37.037 15.41 0.00 0.00 2.29
4423 13517 6.650807 CCGCTACCATATGAAAGTGATAACAT 59.349 38.462 15.41 0.00 0.00 2.71
4424 13518 5.989168 CCGCTACCATATGAAAGTGATAACA 59.011 40.000 15.41 0.00 0.00 2.41
4425 13519 5.408604 CCCGCTACCATATGAAAGTGATAAC 59.591 44.000 15.41 0.00 0.00 1.89
4426 13520 5.305902 TCCCGCTACCATATGAAAGTGATAA 59.694 40.000 15.41 2.90 0.00 1.75
4427 13521 4.836175 TCCCGCTACCATATGAAAGTGATA 59.164 41.667 15.41 4.65 0.00 2.15
4428 13522 3.646162 TCCCGCTACCATATGAAAGTGAT 59.354 43.478 15.41 0.00 0.00 3.06
4429 13523 3.035363 TCCCGCTACCATATGAAAGTGA 58.965 45.455 15.41 5.08 0.00 3.41
4430 13524 3.469008 TCCCGCTACCATATGAAAGTG 57.531 47.619 3.65 7.48 0.00 3.16
4431 13525 4.706842 ATTCCCGCTACCATATGAAAGT 57.293 40.909 3.65 0.00 0.00 2.66
4432 13526 6.391227 AAAATTCCCGCTACCATATGAAAG 57.609 37.500 3.65 2.12 0.00 2.62
4433 13527 6.378564 TGAAAAATTCCCGCTACCATATGAAA 59.621 34.615 3.65 0.00 0.00 2.69
4434 13528 5.888724 TGAAAAATTCCCGCTACCATATGAA 59.111 36.000 3.65 0.00 0.00 2.57
4435 13529 5.441500 TGAAAAATTCCCGCTACCATATGA 58.558 37.500 3.65 0.00 0.00 2.15
4436 13530 5.766150 TGAAAAATTCCCGCTACCATATG 57.234 39.130 0.00 0.00 0.00 1.78
4437 13531 6.976934 AATGAAAAATTCCCGCTACCATAT 57.023 33.333 0.00 0.00 0.00 1.78
4438 13532 9.226606 CTATAATGAAAAATTCCCGCTACCATA 57.773 33.333 0.00 0.00 0.00 2.74
4439 13533 6.976934 ATAATGAAAAATTCCCGCTACCAT 57.023 33.333 0.00 0.00 0.00 3.55
4440 13534 7.284074 TCTATAATGAAAAATTCCCGCTACCA 58.716 34.615 0.00 0.00 0.00 3.25
4441 13535 7.739498 TCTATAATGAAAAATTCCCGCTACC 57.261 36.000 0.00 0.00 0.00 3.18
4442 13536 8.837389 AGTTCTATAATGAAAAATTCCCGCTAC 58.163 33.333 0.00 0.00 0.00 3.58
4443 13537 8.974060 AGTTCTATAATGAAAAATTCCCGCTA 57.026 30.769 0.00 0.00 0.00 4.26
4444 13538 7.881775 AGTTCTATAATGAAAAATTCCCGCT 57.118 32.000 0.00 0.00 0.00 5.52
4445 13539 7.435192 CCAAGTTCTATAATGAAAAATTCCCGC 59.565 37.037 0.00 0.00 0.00 6.13
4446 13540 7.435192 GCCAAGTTCTATAATGAAAAATTCCCG 59.565 37.037 0.00 0.00 0.00 5.14
4447 13541 8.478066 AGCCAAGTTCTATAATGAAAAATTCCC 58.522 33.333 0.00 0.00 0.00 3.97
4448 13542 9.875691 AAGCCAAGTTCTATAATGAAAAATTCC 57.124 29.630 0.00 0.00 0.00 3.01
4460 13554 9.555727 GTTGGAATATACAAGCCAAGTTCTATA 57.444 33.333 0.00 0.00 40.75 1.31
4461 13555 7.226720 CGTTGGAATATACAAGCCAAGTTCTAT 59.773 37.037 0.00 0.00 40.75 1.98
4462 13556 6.537301 CGTTGGAATATACAAGCCAAGTTCTA 59.463 38.462 0.00 0.00 40.75 2.10
4463 13557 5.354234 CGTTGGAATATACAAGCCAAGTTCT 59.646 40.000 0.00 0.00 40.75 3.01
4464 13558 5.353123 TCGTTGGAATATACAAGCCAAGTTC 59.647 40.000 0.00 0.00 40.75 3.01
4465 13559 5.250200 TCGTTGGAATATACAAGCCAAGTT 58.750 37.500 0.00 0.00 40.75 2.66
4466 13560 4.839121 TCGTTGGAATATACAAGCCAAGT 58.161 39.130 0.00 0.00 40.75 3.16
4467 13561 5.277974 CCATCGTTGGAATATACAAGCCAAG 60.278 44.000 6.68 0.00 46.92 3.61
4468 13562 4.578516 CCATCGTTGGAATATACAAGCCAA 59.421 41.667 6.68 0.00 46.92 4.52
4469 13563 4.133820 CCATCGTTGGAATATACAAGCCA 58.866 43.478 6.68 0.00 46.92 4.75
4470 13564 3.502211 CCCATCGTTGGAATATACAAGCC 59.498 47.826 14.27 0.00 46.92 4.35
4471 13565 3.058224 GCCCATCGTTGGAATATACAAGC 60.058 47.826 14.27 1.81 46.92 4.01
4472 13566 4.389374 AGCCCATCGTTGGAATATACAAG 58.611 43.478 14.27 0.00 46.92 3.16
4473 13567 4.431416 AGCCCATCGTTGGAATATACAA 57.569 40.909 14.27 0.00 46.92 2.41
4474 13568 4.385825 GAAGCCCATCGTTGGAATATACA 58.614 43.478 14.27 0.00 46.92 2.29
4475 13569 3.751698 GGAAGCCCATCGTTGGAATATAC 59.248 47.826 14.27 1.00 46.92 1.47
4476 13570 3.650942 AGGAAGCCCATCGTTGGAATATA 59.349 43.478 14.27 0.00 46.92 0.86
4477 13571 2.443255 AGGAAGCCCATCGTTGGAATAT 59.557 45.455 14.27 0.00 46.92 1.28
4478 13572 1.843851 AGGAAGCCCATCGTTGGAATA 59.156 47.619 14.27 0.00 46.92 1.75
4479 13573 0.625849 AGGAAGCCCATCGTTGGAAT 59.374 50.000 14.27 0.00 46.92 3.01
4480 13574 0.035439 GAGGAAGCCCATCGTTGGAA 60.035 55.000 14.27 0.00 46.92 3.53
4481 13575 1.198094 TGAGGAAGCCCATCGTTGGA 61.198 55.000 14.27 0.00 46.92 3.53
4482 13576 0.322456 TTGAGGAAGCCCATCGTTGG 60.322 55.000 5.47 5.47 43.23 3.77
4483 13577 1.533625 TTTGAGGAAGCCCATCGTTG 58.466 50.000 0.00 0.00 33.88 4.10
4484 13578 2.493278 CAATTTGAGGAAGCCCATCGTT 59.507 45.455 0.00 0.00 33.88 3.85
4485 13579 2.094675 CAATTTGAGGAAGCCCATCGT 58.905 47.619 0.00 0.00 33.88 3.73
4486 13580 1.202336 GCAATTTGAGGAAGCCCATCG 60.202 52.381 0.00 0.00 33.88 3.84
4487 13581 1.137675 GGCAATTTGAGGAAGCCCATC 59.862 52.381 0.00 0.00 39.42 3.51
4488 13582 1.197812 GGCAATTTGAGGAAGCCCAT 58.802 50.000 0.00 0.00 39.42 4.00
4489 13583 2.669878 GGCAATTTGAGGAAGCCCA 58.330 52.632 0.00 0.00 39.42 5.36
4491 13585 2.143876 TAGGGCAATTTGAGGAAGCC 57.856 50.000 0.00 0.00 44.48 4.35
4492 13586 3.026694 ACATAGGGCAATTTGAGGAAGC 58.973 45.455 0.00 0.00 0.00 3.86
4493 13587 4.530875 AGACATAGGGCAATTTGAGGAAG 58.469 43.478 0.00 0.00 0.00 3.46
4494 13588 4.591321 AGACATAGGGCAATTTGAGGAA 57.409 40.909 0.00 0.00 0.00 3.36
4495 13589 4.018506 TGAAGACATAGGGCAATTTGAGGA 60.019 41.667 0.00 0.00 0.00 3.71
4496 13590 4.272489 TGAAGACATAGGGCAATTTGAGG 58.728 43.478 0.00 0.00 0.00 3.86
4497 13591 5.591472 TCATGAAGACATAGGGCAATTTGAG 59.409 40.000 0.00 0.00 35.09 3.02
4498 13592 5.508567 TCATGAAGACATAGGGCAATTTGA 58.491 37.500 0.00 0.00 35.09 2.69
4499 13593 5.735354 GCTCATGAAGACATAGGGCAATTTG 60.735 44.000 0.00 0.00 34.05 2.32
4500 13594 4.340381 GCTCATGAAGACATAGGGCAATTT 59.660 41.667 0.00 0.00 34.05 1.82
4501 13595 3.887716 GCTCATGAAGACATAGGGCAATT 59.112 43.478 0.00 0.00 34.05 2.32
4502 13596 3.117776 TGCTCATGAAGACATAGGGCAAT 60.118 43.478 0.00 0.00 37.73 3.56
4503 13597 2.239402 TGCTCATGAAGACATAGGGCAA 59.761 45.455 0.00 0.00 37.73 4.52
4504 13598 1.839354 TGCTCATGAAGACATAGGGCA 59.161 47.619 0.00 0.00 38.05 5.36
4505 13599 2.627515 TGCTCATGAAGACATAGGGC 57.372 50.000 0.00 0.00 35.09 5.19
4506 13600 2.877168 GCTTGCTCATGAAGACATAGGG 59.123 50.000 0.00 0.00 35.09 3.53
4507 13601 3.538591 TGCTTGCTCATGAAGACATAGG 58.461 45.455 0.00 0.00 35.09 2.57
4508 13602 4.634883 ACTTGCTTGCTCATGAAGACATAG 59.365 41.667 0.00 0.00 35.09 2.23
4509 13603 4.582869 ACTTGCTTGCTCATGAAGACATA 58.417 39.130 0.00 0.00 35.09 2.29
4510 13604 3.418995 ACTTGCTTGCTCATGAAGACAT 58.581 40.909 0.00 0.00 37.19 3.06
4511 13605 2.854963 ACTTGCTTGCTCATGAAGACA 58.145 42.857 0.00 0.00 0.00 3.41
4512 13606 3.562505 CAACTTGCTTGCTCATGAAGAC 58.437 45.455 0.00 0.00 0.00 3.01
4513 13607 2.555325 CCAACTTGCTTGCTCATGAAGA 59.445 45.455 0.00 0.00 0.00 2.87
4514 13608 2.555325 TCCAACTTGCTTGCTCATGAAG 59.445 45.455 0.00 0.00 0.00 3.02
4515 13609 2.585330 TCCAACTTGCTTGCTCATGAA 58.415 42.857 0.00 0.00 0.00 2.57
4516 13610 2.275134 TCCAACTTGCTTGCTCATGA 57.725 45.000 0.00 0.00 0.00 3.07
4517 13611 2.876091 CATCCAACTTGCTTGCTCATG 58.124 47.619 0.00 0.00 0.00 3.07
4518 13612 1.203994 GCATCCAACTTGCTTGCTCAT 59.796 47.619 6.83 0.00 37.14 2.90
4519 13613 0.599558 GCATCCAACTTGCTTGCTCA 59.400 50.000 6.83 0.00 37.14 4.26
4520 13614 0.599558 TGCATCCAACTTGCTTGCTC 59.400 50.000 12.63 0.00 40.77 4.26
4521 13615 0.316204 GTGCATCCAACTTGCTTGCT 59.684 50.000 12.63 0.00 40.77 3.91
4522 13616 2.818350 GTGCATCCAACTTGCTTGC 58.182 52.632 0.00 7.05 40.77 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.