Multiple sequence alignment - TraesCS2B01G355300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G355300 chr2B 100.000 6120 0 0 388 6507 507196287 507190168 0.000000e+00 11302.0
1 TraesCS2B01G355300 chr2B 90.462 2275 167 17 3476 5723 506509277 506507026 0.000000e+00 2953.0
2 TraesCS2B01G355300 chr2B 85.372 834 103 12 3479 4306 507410573 507409753 0.000000e+00 846.0
3 TraesCS2B01G355300 chr2B 91.497 588 21 14 1669 2252 506510785 506510223 0.000000e+00 782.0
4 TraesCS2B01G355300 chr2B 86.377 668 78 7 3479 4146 507505464 507504810 0.000000e+00 717.0
5 TraesCS2B01G355300 chr2B 85.602 382 43 4 3103 3472 506510233 506509852 2.200000e-104 390.0
6 TraesCS2B01G355300 chr2B 84.848 363 49 4 2291 2649 54437923 54438283 1.720000e-95 361.0
7 TraesCS2B01G355300 chr2B 83.750 400 37 9 1267 1647 506511160 506510770 2.890000e-93 353.0
8 TraesCS2B01G355300 chr2B 90.419 167 13 1 1484 1647 507412056 507411890 3.950000e-52 217.0
9 TraesCS2B01G355300 chr2B 93.443 122 8 0 1503 1624 507506516 507506395 1.440000e-41 182.0
10 TraesCS2B01G355300 chr2B 100.000 33 0 0 1 33 507196674 507196642 1.960000e-05 62.1
11 TraesCS2B01G355300 chr2D 94.145 3877 195 14 2652 6507 430384335 430388200 0.000000e+00 5873.0
12 TraesCS2B01G355300 chr2D 95.037 1894 92 2 2652 4544 429692482 429690590 0.000000e+00 2976.0
13 TraesCS2B01G355300 chr2D 93.519 2006 108 15 4518 6507 429690586 429688587 0.000000e+00 2964.0
14 TraesCS2B01G355300 chr2D 90.504 1369 105 13 3468 4833 429740480 429739134 0.000000e+00 1784.0
15 TraesCS2B01G355300 chr2D 89.299 1299 68 27 388 1647 429743231 429741965 0.000000e+00 1563.0
16 TraesCS2B01G355300 chr2D 89.195 1305 63 35 388 1647 430382383 430383654 0.000000e+00 1557.0
17 TraesCS2B01G355300 chr2D 82.176 1066 128 31 4928 5971 429739070 429738045 0.000000e+00 859.0
18 TraesCS2B01G355300 chr2D 83.986 868 109 20 3507 4364 429925297 429924450 0.000000e+00 806.0
19 TraesCS2B01G355300 chr2D 93.141 554 24 6 1740 2290 430383801 430384343 0.000000e+00 800.0
20 TraesCS2B01G355300 chr2D 91.696 578 27 8 1716 2290 429693033 429692474 0.000000e+00 782.0
21 TraesCS2B01G355300 chr2D 87.571 708 44 20 397 1077 429694540 429693850 0.000000e+00 780.0
22 TraesCS2B01G355300 chr2D 89.855 552 36 9 1111 1647 429693674 429693128 0.000000e+00 691.0
23 TraesCS2B01G355300 chr2D 84.046 608 64 15 1675 2252 429741974 429741370 7.370000e-154 555.0
24 TraesCS2B01G355300 chr2D 86.702 376 41 6 3103 3472 429741380 429741008 6.070000e-110 409.0
25 TraesCS2B01G355300 chr2D 74.343 647 83 52 717 1334 429839197 429838605 1.430000e-46 198.0
26 TraesCS2B01G355300 chr2D 90.179 112 10 1 5918 6028 2044028 2044139 1.890000e-30 145.0
27 TraesCS2B01G355300 chr2D 100.000 31 0 0 1675 1705 429693137 429693107 2.530000e-04 58.4
28 TraesCS2B01G355300 chr2D 94.595 37 2 0 1669 1705 430383639 430383675 2.530000e-04 58.4
29 TraesCS2B01G355300 chr2D 96.970 33 1 0 1 33 429743630 429743598 1.000000e-03 56.5
30 TraesCS2B01G355300 chr2A 93.654 3861 214 12 2652 6486 558090096 558093951 0.000000e+00 5744.0
31 TraesCS2B01G355300 chr2A 93.296 3893 221 18 2652 6507 556108822 556104933 0.000000e+00 5707.0
32 TraesCS2B01G355300 chr2A 89.360 1297 69 27 388 1647 558088164 558089428 0.000000e+00 1567.0
33 TraesCS2B01G355300 chr2A 88.462 1274 66 34 388 1609 556110886 556109642 0.000000e+00 1463.0
34 TraesCS2B01G355300 chr2A 94.502 582 24 3 1716 2290 558089524 558090104 0.000000e+00 891.0
35 TraesCS2B01G355300 chr2A 95.307 554 23 1 1740 2290 556109367 556108814 0.000000e+00 876.0
36 TraesCS2B01G355300 chr2A 81.693 1087 141 40 3476 4524 557400726 557401792 0.000000e+00 852.0
37 TraesCS2B01G355300 chr2A 84.296 866 107 19 3507 4363 557319437 557320282 0.000000e+00 819.0
38 TraesCS2B01G355300 chr2A 83.256 860 113 20 3507 4355 557059009 557059848 0.000000e+00 761.0
39 TraesCS2B01G355300 chr2A 83.761 117 17 2 5920 6035 277069973 277069858 6.900000e-20 110.0
40 TraesCS2B01G355300 chr6D 84.052 464 61 7 2652 3106 28405915 28405456 1.000000e-117 435.0
41 TraesCS2B01G355300 chr6D 82.963 135 18 5 5906 6036 402115204 402115337 4.120000e-22 117.0
42 TraesCS2B01G355300 chr1D 88.219 365 42 1 2291 2654 10592413 10592777 1.000000e-117 435.0
43 TraesCS2B01G355300 chr7B 87.945 365 43 1 2291 2654 748589261 748589625 4.660000e-116 429.0
44 TraesCS2B01G355300 chr1A 87.158 366 43 4 2291 2654 497503312 497503675 4.690000e-111 412.0
45 TraesCS2B01G355300 chr1A 84.078 358 49 4 2652 3003 41349328 41349683 8.080000e-89 339.0
46 TraesCS2B01G355300 chr1A 83.799 358 50 4 2652 3003 41340951 41341306 3.760000e-87 333.0
47 TraesCS2B01G355300 chr5D 86.813 364 47 1 2291 2653 287569176 287569539 7.860000e-109 405.0
48 TraesCS2B01G355300 chr5D 84.334 383 49 7 2284 2658 556723769 556724148 1.330000e-96 364.0
49 TraesCS2B01G355300 chr7D 87.842 329 38 2 2291 2617 603646944 603647272 1.020000e-102 385.0
50 TraesCS2B01G355300 chr1B 88.679 318 33 3 2294 2608 453321543 453321860 1.020000e-102 385.0
51 TraesCS2B01G355300 chr1B 82.594 293 48 3 2777 3068 61488951 61489241 8.370000e-64 255.0
52 TraesCS2B01G355300 chr1B 79.894 189 24 12 5918 6099 178723197 178723378 6.850000e-25 126.0
53 TraesCS2B01G355300 chrUn 84.699 366 54 2 2296 2659 136334411 136334776 1.330000e-96 364.0
54 TraesCS2B01G355300 chr7A 76.383 470 75 18 2656 3103 27521365 27520910 3.050000e-53 220.0
55 TraesCS2B01G355300 chr3D 83.333 120 16 4 5920 6037 537651708 537651825 2.480000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G355300 chr2B 507190168 507196674 6506 True 5682.050000 11302 100.000000 1 6507 2 chr2B.!!$R2 6506
1 TraesCS2B01G355300 chr2B 506507026 506511160 4134 True 1119.500000 2953 87.827750 1267 5723 4 chr2B.!!$R1 4456
2 TraesCS2B01G355300 chr2B 507409753 507412056 2303 True 531.500000 846 87.895500 1484 4306 2 chr2B.!!$R3 2822
3 TraesCS2B01G355300 chr2B 507504810 507506516 1706 True 449.500000 717 89.910000 1503 4146 2 chr2B.!!$R4 2643
4 TraesCS2B01G355300 chr2D 430382383 430388200 5817 False 2072.100000 5873 92.769000 388 6507 4 chr2D.!!$F2 6119
5 TraesCS2B01G355300 chr2D 429688587 429694540 5953 True 1375.233333 2976 92.946333 397 6507 6 chr2D.!!$R3 6110
6 TraesCS2B01G355300 chr2D 429738045 429743630 5585 True 871.083333 1784 88.282833 1 5971 6 chr2D.!!$R4 5970
7 TraesCS2B01G355300 chr2D 429924450 429925297 847 True 806.000000 806 83.986000 3507 4364 1 chr2D.!!$R2 857
8 TraesCS2B01G355300 chr2A 558088164 558093951 5787 False 2734.000000 5744 92.505333 388 6486 3 chr2A.!!$F4 6098
9 TraesCS2B01G355300 chr2A 556104933 556110886 5953 True 2682.000000 5707 92.355000 388 6507 3 chr2A.!!$R2 6119
10 TraesCS2B01G355300 chr2A 557400726 557401792 1066 False 852.000000 852 81.693000 3476 4524 1 chr2A.!!$F3 1048
11 TraesCS2B01G355300 chr2A 557319437 557320282 845 False 819.000000 819 84.296000 3507 4363 1 chr2A.!!$F2 856
12 TraesCS2B01G355300 chr2A 557059009 557059848 839 False 761.000000 761 83.256000 3507 4355 1 chr2A.!!$F1 848

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
30 31 3.057337 CACCCGGTTCGGTCTTCT 58.943 61.111 0.00 0.0 46.80 2.85 F
1052 1107 1.280421 GCCTCTGTTTCTGGTCTCCAT 59.720 52.381 0.00 0.0 30.82 3.41 F
1909 2359 0.179015 TGCTGCAGGTTTAACGGGAA 60.179 50.000 17.12 0.0 0.00 3.97 F
2350 2914 0.035317 TCAGTCGACCTTGCAGCATT 59.965 50.000 13.01 0.0 0.00 3.56 F
2411 2975 0.037590 ATCCGCCTTGCTGGTTGTAA 59.962 50.000 0.00 0.0 38.35 2.41 F
2436 3000 0.098200 CGTCCTCGTCGATTGTAGCA 59.902 55.000 0.00 0.0 0.00 3.49 F
2452 3016 0.172803 AGCACGTTATCTCACCGGTC 59.827 55.000 2.59 0.0 0.00 4.79 F
2582 3146 0.248621 GCCATGCCGTTTACAGCATC 60.249 55.000 0.73 0.0 46.58 3.91 F
3050 3619 0.586319 CAACGCGATCCAACAGTTGT 59.414 50.000 15.93 0.0 37.84 3.32 F
4118 6297 1.339610 CAACATGAAAAGCACGGGGAA 59.660 47.619 0.00 0.0 0.00 3.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1213 1410 0.033504 CCACCTACCGGAATCCATCG 59.966 60.000 9.46 0.00 0.00 3.84 R
2331 2895 0.035317 AATGCTGCAAGGTCGACTGA 59.965 50.000 16.46 0.00 0.00 3.41 R
2920 3488 1.029408 TTGCAAACCATAGCGGCGAT 61.029 50.000 12.98 7.15 39.03 4.58 R
4101 6280 1.247567 AGTTCCCCGTGCTTTTCATG 58.752 50.000 0.00 0.00 0.00 3.07 R
4270 6456 2.237143 TGATTCTGCTCGGTTCTGGATT 59.763 45.455 0.00 0.00 0.00 3.01 R
4306 6492 6.469782 AAGTTGATGACAGTTTCATTGGTT 57.530 33.333 0.00 0.00 45.67 3.67 R
4619 6888 5.299028 TGCACTCTTAACATGCAGAGAAAAA 59.701 36.000 19.20 4.37 44.17 1.94 R
4712 6981 8.090831 TGAAGGCTTGATAATATGCAGTACTAG 58.909 37.037 3.46 0.00 0.00 2.57 R
4964 7243 0.250684 TCTTCCTGCCACAATCGCAA 60.251 50.000 0.00 0.00 35.40 4.85 R
6195 8555 0.813821 GTAGGTACGTGTGTCCCCTC 59.186 60.000 0.00 0.00 33.14 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 3.057337 CACCCGGTTCGGTCTTCT 58.943 61.111 0.00 0.00 46.80 2.85
474 487 7.979115 TGGACAAAGTCTTGTTTTTATTTCG 57.021 32.000 0.00 0.00 45.98 3.46
500 513 6.049790 GGTATAACTCACTTCCCTTGCTTAG 58.950 44.000 0.00 0.00 0.00 2.18
526 539 9.509855 GCAAGAGATAGATAATAATACTGACCG 57.490 37.037 0.00 0.00 0.00 4.79
527 540 9.509855 CAAGAGATAGATAATAATACTGACCGC 57.490 37.037 0.00 0.00 0.00 5.68
528 541 8.809468 AGAGATAGATAATAATACTGACCGCA 57.191 34.615 0.00 0.00 0.00 5.69
529 542 9.244292 AGAGATAGATAATAATACTGACCGCAA 57.756 33.333 0.00 0.00 0.00 4.85
643 682 4.417426 AGAGTTCCCTCTCGTTGAAAAA 57.583 40.909 0.00 0.00 45.08 1.94
980 1035 3.781307 CCCAATCCTCCCGTCGCA 61.781 66.667 0.00 0.00 0.00 5.10
1052 1107 1.280421 GCCTCTGTTTCTGGTCTCCAT 59.720 52.381 0.00 0.00 30.82 3.41
1080 1135 2.672760 GCTCGTCCTCTCTGTCCTTTTC 60.673 54.545 0.00 0.00 0.00 2.29
1209 1406 1.878522 GGCGTCGCGATTGATCAGT 60.879 57.895 14.06 0.00 0.00 3.41
1213 1410 0.574454 GTCGCGATTGATCAGTGAGC 59.426 55.000 14.06 0.17 0.00 4.26
1227 1424 0.387929 GTGAGCGATGGATTCCGGTA 59.612 55.000 0.00 0.00 36.60 4.02
1228 1425 0.673985 TGAGCGATGGATTCCGGTAG 59.326 55.000 0.00 0.00 36.60 3.18
1237 1434 2.108601 TGGATTCCGGTAGGTGGTTTTT 59.891 45.455 0.00 0.00 39.05 1.94
1240 1437 3.294038 TTCCGGTAGGTGGTTTTTGAA 57.706 42.857 0.00 0.00 39.05 2.69
1242 1439 1.883926 CCGGTAGGTGGTTTTTGAAGG 59.116 52.381 0.00 0.00 0.00 3.46
1243 1440 2.487625 CCGGTAGGTGGTTTTTGAAGGA 60.488 50.000 0.00 0.00 0.00 3.36
1247 1444 0.679505 GGTGGTTTTTGAAGGAGCCC 59.320 55.000 0.00 0.00 0.00 5.19
1251 1448 1.906333 TTTTTGAAGGAGCCCGGGC 60.906 57.895 39.29 39.29 42.33 6.13
1395 1600 2.709125 TTCCCTCGTCGTTGCAGTGG 62.709 60.000 0.00 0.00 0.00 4.00
1396 1601 3.414700 CCTCGTCGTTGCAGTGGC 61.415 66.667 0.00 0.00 41.68 5.01
1397 1602 2.356313 CTCGTCGTTGCAGTGGCT 60.356 61.111 0.00 0.00 41.91 4.75
1398 1603 2.661537 TCGTCGTTGCAGTGGCTG 60.662 61.111 0.00 0.00 41.91 4.85
1474 1704 2.478134 CGAAGGAAGCAGTGAAGTGAAG 59.522 50.000 0.00 0.00 0.00 3.02
1494 1724 2.230266 AGAGAAGACGGAAGCAGAGAAC 59.770 50.000 0.00 0.00 0.00 3.01
1532 1764 4.137872 GTCGTGAATCCGGCCCGA 62.138 66.667 3.71 0.00 0.00 5.14
1637 1983 1.412710 TCTGTTCCGTTCAGCTCTGTT 59.587 47.619 0.00 0.00 33.48 3.16
1638 1984 1.795286 CTGTTCCGTTCAGCTCTGTTC 59.205 52.381 0.00 0.00 0.00 3.18
1639 1985 1.412710 TGTTCCGTTCAGCTCTGTTCT 59.587 47.619 0.00 0.00 0.00 3.01
1640 1986 1.795286 GTTCCGTTCAGCTCTGTTCTG 59.205 52.381 0.00 0.00 0.00 3.02
1641 1987 1.040646 TCCGTTCAGCTCTGTTCTGT 58.959 50.000 0.00 0.00 33.48 3.41
1642 1988 1.412710 TCCGTTCAGCTCTGTTCTGTT 59.587 47.619 0.00 0.00 33.48 3.16
1643 1989 2.158957 TCCGTTCAGCTCTGTTCTGTTT 60.159 45.455 0.00 0.00 33.48 2.83
1644 1990 3.069016 TCCGTTCAGCTCTGTTCTGTTTA 59.931 43.478 0.00 0.00 33.48 2.01
1645 1991 3.430218 CCGTTCAGCTCTGTTCTGTTTAG 59.570 47.826 0.00 0.00 33.48 1.85
1646 1992 4.051922 CGTTCAGCTCTGTTCTGTTTAGT 58.948 43.478 0.00 0.00 33.48 2.24
1647 1993 5.220381 CGTTCAGCTCTGTTCTGTTTAGTA 58.780 41.667 0.00 0.00 33.48 1.82
1648 1994 5.864474 CGTTCAGCTCTGTTCTGTTTAGTAT 59.136 40.000 0.00 0.00 33.48 2.12
1649 1995 6.034044 CGTTCAGCTCTGTTCTGTTTAGTATC 59.966 42.308 0.00 0.00 33.48 2.24
1650 1996 5.967088 TCAGCTCTGTTCTGTTTAGTATCC 58.033 41.667 0.00 0.00 33.48 2.59
1651 1997 5.717178 TCAGCTCTGTTCTGTTTAGTATCCT 59.283 40.000 0.00 0.00 33.48 3.24
1652 1998 6.039616 CAGCTCTGTTCTGTTTAGTATCCTC 58.960 44.000 0.00 0.00 0.00 3.71
1653 1999 5.717178 AGCTCTGTTCTGTTTAGTATCCTCA 59.283 40.000 0.00 0.00 0.00 3.86
1654 2000 6.211584 AGCTCTGTTCTGTTTAGTATCCTCAA 59.788 38.462 0.00 0.00 0.00 3.02
1655 2001 6.874134 GCTCTGTTCTGTTTAGTATCCTCAAA 59.126 38.462 0.00 0.00 0.00 2.69
1656 2002 7.387948 GCTCTGTTCTGTTTAGTATCCTCAAAA 59.612 37.037 0.00 0.00 0.00 2.44
1657 2003 9.273016 CTCTGTTCTGTTTAGTATCCTCAAAAA 57.727 33.333 0.00 0.00 0.00 1.94
1883 2333 9.784531 TGATTCAGGATTTATCTTATTCAGGTC 57.215 33.333 0.00 0.00 0.00 3.85
1909 2359 0.179015 TGCTGCAGGTTTAACGGGAA 60.179 50.000 17.12 0.00 0.00 3.97
1968 2452 2.028112 GTGACACTCTGCCAACCTGATA 60.028 50.000 0.00 0.00 0.00 2.15
1981 2480 6.595326 TGCCAACCTGATAATCATTCGATATC 59.405 38.462 0.00 0.00 0.00 1.63
2124 2662 3.852286 TGAAAATAGCAATGCAAGGCAG 58.148 40.909 8.35 0.00 43.65 4.85
2132 2670 3.765511 AGCAATGCAAGGCAGAAGATTTA 59.234 39.130 8.35 0.00 43.65 1.40
2265 2829 1.705002 AATATGGGGGCAGCTACGCA 61.705 55.000 3.12 9.19 0.00 5.24
2288 2852 0.314618 GCCCGCGGGTCTTTTAAAAA 59.685 50.000 42.53 0.00 37.65 1.94
2289 2853 1.667756 GCCCGCGGGTCTTTTAAAAAG 60.668 52.381 42.53 15.27 37.65 2.27
2290 2854 1.667756 CCCGCGGGTCTTTTAAAAAGC 60.668 52.381 36.64 3.52 0.00 3.51
2291 2855 1.323791 CGCGGGTCTTTTAAAAAGCG 58.676 50.000 0.00 14.86 40.37 4.68
2292 2856 1.693467 GCGGGTCTTTTAAAAAGCGG 58.307 50.000 1.66 8.25 0.00 5.52
2293 2857 1.667756 GCGGGTCTTTTAAAAAGCGGG 60.668 52.381 1.66 0.00 0.00 6.13
2294 2858 1.881324 CGGGTCTTTTAAAAAGCGGGA 59.119 47.619 1.66 0.00 0.00 5.14
2295 2859 2.490509 CGGGTCTTTTAAAAAGCGGGAT 59.509 45.455 1.66 0.00 0.00 3.85
2296 2860 3.057104 CGGGTCTTTTAAAAAGCGGGATT 60.057 43.478 1.66 0.00 0.00 3.01
2297 2861 4.242475 GGGTCTTTTAAAAAGCGGGATTG 58.758 43.478 1.66 0.00 0.00 2.67
2298 2862 3.678072 GGTCTTTTAAAAAGCGGGATTGC 59.322 43.478 1.66 0.00 0.00 3.56
2300 2864 4.385748 GTCTTTTAAAAAGCGGGATTGCTG 59.614 41.667 1.66 0.00 46.60 4.41
2301 2865 4.279671 TCTTTTAAAAAGCGGGATTGCTGA 59.720 37.500 1.66 0.00 46.60 4.26
2302 2866 4.592485 TTTAAAAAGCGGGATTGCTGAA 57.408 36.364 0.00 0.00 46.60 3.02
2303 2867 4.592485 TTAAAAAGCGGGATTGCTGAAA 57.408 36.364 0.00 0.00 46.60 2.69
2304 2868 3.467374 AAAAAGCGGGATTGCTGAAAA 57.533 38.095 0.00 0.00 46.60 2.29
2305 2869 3.683365 AAAAGCGGGATTGCTGAAAAT 57.317 38.095 0.00 0.00 46.60 1.82
2306 2870 2.947448 AAGCGGGATTGCTGAAAATC 57.053 45.000 0.00 0.00 46.60 2.17
2307 2871 1.838112 AGCGGGATTGCTGAAAATCA 58.162 45.000 6.04 0.00 45.28 2.57
2308 2872 1.747355 AGCGGGATTGCTGAAAATCAG 59.253 47.619 3.00 3.00 46.90 2.90
2309 2873 1.474077 GCGGGATTGCTGAAAATCAGT 59.526 47.619 8.97 0.00 45.94 3.41
2310 2874 2.478539 GCGGGATTGCTGAAAATCAGTC 60.479 50.000 8.97 2.85 45.94 3.51
2311 2875 2.223112 CGGGATTGCTGAAAATCAGTCG 60.223 50.000 8.97 1.74 45.94 4.18
2312 2876 3.009723 GGGATTGCTGAAAATCAGTCGA 58.990 45.455 8.97 2.64 45.94 4.20
2313 2877 3.181506 GGGATTGCTGAAAATCAGTCGAC 60.182 47.826 7.70 7.70 45.94 4.20
2314 2878 3.686726 GGATTGCTGAAAATCAGTCGACT 59.313 43.478 13.58 13.58 45.94 4.18
2315 2879 4.436584 GGATTGCTGAAAATCAGTCGACTG 60.437 45.833 34.76 34.76 45.94 3.51
2328 2892 5.672653 CAGTCGACTGAGATTTAACGAAG 57.327 43.478 36.73 7.53 46.59 3.79
2329 2893 5.154932 CAGTCGACTGAGATTTAACGAAGT 58.845 41.667 36.73 0.00 46.20 3.01
2330 2894 5.284188 CAGTCGACTGAGATTTAACGAAGTC 59.716 44.000 36.73 0.00 44.12 3.01
2331 2895 5.181622 AGTCGACTGAGATTTAACGAAGTCT 59.818 40.000 19.30 0.00 45.00 3.24
2332 2896 5.508922 GTCGACTGAGATTTAACGAAGTCTC 59.491 44.000 8.70 0.00 45.00 3.36
2337 2901 5.918387 GAGATTTAACGAAGTCTCAGTCG 57.082 43.478 5.59 0.00 45.00 4.18
2338 2902 5.624344 AGATTTAACGAAGTCTCAGTCGA 57.376 39.130 0.00 0.00 45.00 4.20
2339 2903 5.392286 AGATTTAACGAAGTCTCAGTCGAC 58.608 41.667 7.70 7.70 45.00 4.20
2340 2904 3.549299 TTAACGAAGTCTCAGTCGACC 57.451 47.619 13.01 0.00 45.00 4.79
2341 2905 1.606903 AACGAAGTCTCAGTCGACCT 58.393 50.000 13.01 0.00 45.00 3.85
2342 2906 1.606903 ACGAAGTCTCAGTCGACCTT 58.393 50.000 13.01 7.86 29.74 3.50
2343 2907 1.267261 ACGAAGTCTCAGTCGACCTTG 59.733 52.381 13.01 5.07 29.74 3.61
2344 2908 1.704070 GAAGTCTCAGTCGACCTTGC 58.296 55.000 13.01 0.00 34.46 4.01
2345 2909 1.000163 GAAGTCTCAGTCGACCTTGCA 60.000 52.381 13.01 0.00 34.46 4.08
2346 2910 0.600557 AGTCTCAGTCGACCTTGCAG 59.399 55.000 13.01 5.16 34.46 4.41
2347 2911 1.011451 GTCTCAGTCGACCTTGCAGC 61.011 60.000 13.01 0.00 0.00 5.25
2348 2912 1.005748 CTCAGTCGACCTTGCAGCA 60.006 57.895 13.01 0.00 0.00 4.41
2349 2913 0.390866 CTCAGTCGACCTTGCAGCAT 60.391 55.000 13.01 0.00 0.00 3.79
2350 2914 0.035317 TCAGTCGACCTTGCAGCATT 59.965 50.000 13.01 0.00 0.00 3.56
2351 2915 0.877071 CAGTCGACCTTGCAGCATTT 59.123 50.000 13.01 0.00 0.00 2.32
2352 2916 1.267806 CAGTCGACCTTGCAGCATTTT 59.732 47.619 13.01 0.00 0.00 1.82
2353 2917 1.267806 AGTCGACCTTGCAGCATTTTG 59.732 47.619 13.01 0.00 0.00 2.44
2354 2918 1.001378 GTCGACCTTGCAGCATTTTGT 60.001 47.619 3.51 0.00 0.00 2.83
2355 2919 1.266718 TCGACCTTGCAGCATTTTGTC 59.733 47.619 0.00 0.00 0.00 3.18
2356 2920 1.666888 CGACCTTGCAGCATTTTGTCC 60.667 52.381 0.00 0.00 0.00 4.02
2357 2921 0.681175 ACCTTGCAGCATTTTGTCCC 59.319 50.000 0.00 0.00 0.00 4.46
2358 2922 0.680618 CCTTGCAGCATTTTGTCCCA 59.319 50.000 0.00 0.00 0.00 4.37
2359 2923 1.276989 CCTTGCAGCATTTTGTCCCAT 59.723 47.619 0.00 0.00 0.00 4.00
2360 2924 2.613691 CTTGCAGCATTTTGTCCCATC 58.386 47.619 0.00 0.00 0.00 3.51
2361 2925 0.527113 TGCAGCATTTTGTCCCATCG 59.473 50.000 0.00 0.00 0.00 3.84
2362 2926 0.527565 GCAGCATTTTGTCCCATCGT 59.472 50.000 0.00 0.00 0.00 3.73
2363 2927 1.067635 GCAGCATTTTGTCCCATCGTT 60.068 47.619 0.00 0.00 0.00 3.85
2364 2928 2.867429 CAGCATTTTGTCCCATCGTTC 58.133 47.619 0.00 0.00 0.00 3.95
2365 2929 2.228582 CAGCATTTTGTCCCATCGTTCA 59.771 45.455 0.00 0.00 0.00 3.18
2366 2930 2.228822 AGCATTTTGTCCCATCGTTCAC 59.771 45.455 0.00 0.00 0.00 3.18
2367 2931 2.030363 GCATTTTGTCCCATCGTTCACA 60.030 45.455 0.00 0.00 0.00 3.58
2368 2932 3.551863 GCATTTTGTCCCATCGTTCACAA 60.552 43.478 0.00 0.00 0.00 3.33
2369 2933 3.701532 TTTTGTCCCATCGTTCACAAC 57.298 42.857 0.00 0.00 0.00 3.32
2370 2934 2.333688 TTGTCCCATCGTTCACAACA 57.666 45.000 0.00 0.00 0.00 3.33
2371 2935 2.559698 TGTCCCATCGTTCACAACAT 57.440 45.000 0.00 0.00 0.00 2.71
2372 2936 2.857483 TGTCCCATCGTTCACAACATT 58.143 42.857 0.00 0.00 0.00 2.71
2373 2937 3.218453 TGTCCCATCGTTCACAACATTT 58.782 40.909 0.00 0.00 0.00 2.32
2374 2938 3.634448 TGTCCCATCGTTCACAACATTTT 59.366 39.130 0.00 0.00 0.00 1.82
2375 2939 4.098654 TGTCCCATCGTTCACAACATTTTT 59.901 37.500 0.00 0.00 0.00 1.94
2392 2956 2.356665 TTTTCCTACTGGCTGCAACA 57.643 45.000 0.50 0.00 0.00 3.33
2393 2957 2.584835 TTTCCTACTGGCTGCAACAT 57.415 45.000 0.50 0.00 0.00 2.71
2394 2958 2.113860 TTCCTACTGGCTGCAACATC 57.886 50.000 0.50 0.00 0.00 3.06
2395 2959 0.253044 TCCTACTGGCTGCAACATCC 59.747 55.000 0.50 0.00 0.00 3.51
2396 2960 1.091771 CCTACTGGCTGCAACATCCG 61.092 60.000 0.50 0.00 0.00 4.18
2397 2961 1.709147 CTACTGGCTGCAACATCCGC 61.709 60.000 0.50 0.00 0.00 5.54
2398 2962 3.818787 CTGGCTGCAACATCCGCC 61.819 66.667 5.48 5.48 42.78 6.13
2399 2963 4.349503 TGGCTGCAACATCCGCCT 62.350 61.111 12.97 0.00 42.90 5.52
2400 2964 3.064324 GGCTGCAACATCCGCCTT 61.064 61.111 0.50 0.00 39.42 4.35
2401 2965 2.180017 GCTGCAACATCCGCCTTG 59.820 61.111 0.00 0.00 0.00 3.61
2402 2966 2.180017 CTGCAACATCCGCCTTGC 59.820 61.111 0.00 0.00 42.67 4.01
2403 2967 2.282391 TGCAACATCCGCCTTGCT 60.282 55.556 4.19 0.00 42.77 3.91
2404 2968 2.180017 GCAACATCCGCCTTGCTG 59.820 61.111 0.00 0.00 39.79 4.41
2405 2969 2.879907 CAACATCCGCCTTGCTGG 59.120 61.111 0.00 0.00 39.35 4.85
2406 2970 1.973281 CAACATCCGCCTTGCTGGT 60.973 57.895 0.00 0.00 38.35 4.00
2407 2971 1.228552 AACATCCGCCTTGCTGGTT 60.229 52.632 0.00 0.00 38.35 3.67
2408 2972 1.526575 AACATCCGCCTTGCTGGTTG 61.527 55.000 0.00 0.00 38.35 3.77
2409 2973 1.973281 CATCCGCCTTGCTGGTTGT 60.973 57.895 0.00 0.00 38.35 3.32
2410 2974 0.676466 CATCCGCCTTGCTGGTTGTA 60.676 55.000 0.00 0.00 38.35 2.41
2411 2975 0.037590 ATCCGCCTTGCTGGTTGTAA 59.962 50.000 0.00 0.00 38.35 2.41
2412 2976 0.887387 TCCGCCTTGCTGGTTGTAAC 60.887 55.000 0.00 0.00 38.35 2.50
2413 2977 1.169661 CCGCCTTGCTGGTTGTAACA 61.170 55.000 0.00 0.00 38.35 2.41
2414 2978 0.881118 CGCCTTGCTGGTTGTAACAT 59.119 50.000 0.00 0.00 38.35 2.71
2415 2979 1.401409 CGCCTTGCTGGTTGTAACATG 60.401 52.381 0.00 0.00 38.35 3.21
2416 2980 1.613437 GCCTTGCTGGTTGTAACATGT 59.387 47.619 0.00 0.00 38.35 3.21
2417 2981 2.351738 GCCTTGCTGGTTGTAACATGTC 60.352 50.000 0.00 0.00 38.35 3.06
2418 2982 2.095768 CCTTGCTGGTTGTAACATGTCG 60.096 50.000 0.00 0.00 0.00 4.35
2419 2983 2.248280 TGCTGGTTGTAACATGTCGT 57.752 45.000 0.00 0.00 0.00 4.34
2420 2984 2.139917 TGCTGGTTGTAACATGTCGTC 58.860 47.619 0.00 0.00 0.00 4.20
2421 2985 1.463444 GCTGGTTGTAACATGTCGTCC 59.537 52.381 0.00 0.00 0.00 4.79
2422 2986 2.870435 GCTGGTTGTAACATGTCGTCCT 60.870 50.000 0.00 0.00 0.00 3.85
2423 2987 2.993899 CTGGTTGTAACATGTCGTCCTC 59.006 50.000 0.00 0.00 0.00 3.71
2424 2988 1.990563 GGTTGTAACATGTCGTCCTCG 59.009 52.381 0.00 0.00 38.55 4.63
2425 2989 2.608752 GGTTGTAACATGTCGTCCTCGT 60.609 50.000 0.00 0.00 38.33 4.18
2426 2990 2.624316 TGTAACATGTCGTCCTCGTC 57.376 50.000 0.00 0.00 38.33 4.20
2427 2991 1.135888 TGTAACATGTCGTCCTCGTCG 60.136 52.381 0.00 0.00 38.33 5.12
2428 2992 1.129251 GTAACATGTCGTCCTCGTCGA 59.871 52.381 0.00 0.00 38.33 4.20
2429 2993 0.809385 AACATGTCGTCCTCGTCGAT 59.191 50.000 0.00 0.00 39.45 3.59
2430 2994 0.809385 ACATGTCGTCCTCGTCGATT 59.191 50.000 0.00 0.00 39.45 3.34
2431 2995 1.191944 CATGTCGTCCTCGTCGATTG 58.808 55.000 0.00 0.00 39.45 2.67
2432 2996 0.809385 ATGTCGTCCTCGTCGATTGT 59.191 50.000 0.00 0.00 39.45 2.71
2433 2997 1.441738 TGTCGTCCTCGTCGATTGTA 58.558 50.000 0.00 0.00 39.45 2.41
2434 2998 1.395954 TGTCGTCCTCGTCGATTGTAG 59.604 52.381 0.00 0.00 39.45 2.74
2435 2999 0.376152 TCGTCCTCGTCGATTGTAGC 59.624 55.000 0.00 0.00 38.33 3.58
2436 3000 0.098200 CGTCCTCGTCGATTGTAGCA 59.902 55.000 0.00 0.00 0.00 3.49
2437 3001 1.546834 GTCCTCGTCGATTGTAGCAC 58.453 55.000 0.00 0.00 0.00 4.40
2438 3002 0.098200 TCCTCGTCGATTGTAGCACG 59.902 55.000 0.00 0.00 0.00 5.34
2439 3003 0.179171 CCTCGTCGATTGTAGCACGT 60.179 55.000 0.00 0.00 33.89 4.49
2440 3004 1.614385 CTCGTCGATTGTAGCACGTT 58.386 50.000 0.00 0.00 33.89 3.99
2441 3005 2.476686 CCTCGTCGATTGTAGCACGTTA 60.477 50.000 0.00 0.00 33.89 3.18
2442 3006 3.360533 CTCGTCGATTGTAGCACGTTAT 58.639 45.455 0.00 0.00 33.89 1.89
2443 3007 3.357021 TCGTCGATTGTAGCACGTTATC 58.643 45.455 0.00 0.00 33.89 1.75
2444 3008 3.064408 TCGTCGATTGTAGCACGTTATCT 59.936 43.478 0.00 0.00 33.89 1.98
2445 3009 3.417969 CGTCGATTGTAGCACGTTATCTC 59.582 47.826 0.00 0.00 0.00 2.75
2446 3010 4.348656 GTCGATTGTAGCACGTTATCTCA 58.651 43.478 0.00 0.00 0.00 3.27
2447 3011 4.204573 GTCGATTGTAGCACGTTATCTCAC 59.795 45.833 0.00 0.00 0.00 3.51
2448 3012 3.486108 CGATTGTAGCACGTTATCTCACC 59.514 47.826 0.00 0.00 0.00 4.02
2449 3013 2.554806 TGTAGCACGTTATCTCACCG 57.445 50.000 0.00 0.00 0.00 4.94
2450 3014 1.133598 TGTAGCACGTTATCTCACCGG 59.866 52.381 0.00 0.00 0.00 5.28
2451 3015 1.133790 GTAGCACGTTATCTCACCGGT 59.866 52.381 0.00 0.00 0.00 5.28
2452 3016 0.172803 AGCACGTTATCTCACCGGTC 59.827 55.000 2.59 0.00 0.00 4.79
2453 3017 1.138047 GCACGTTATCTCACCGGTCG 61.138 60.000 2.59 6.00 0.00 4.79
2454 3018 1.138047 CACGTTATCTCACCGGTCGC 61.138 60.000 2.59 0.00 0.00 5.19
2455 3019 1.138036 CGTTATCTCACCGGTCGCA 59.862 57.895 2.59 0.00 0.00 5.10
2456 3020 0.457166 CGTTATCTCACCGGTCGCAA 60.457 55.000 2.59 0.00 0.00 4.85
2457 3021 0.997196 GTTATCTCACCGGTCGCAAC 59.003 55.000 2.59 0.89 0.00 4.17
2458 3022 0.604073 TTATCTCACCGGTCGCAACA 59.396 50.000 2.59 0.00 0.00 3.33
2459 3023 0.821517 TATCTCACCGGTCGCAACAT 59.178 50.000 2.59 0.00 0.00 2.71
2460 3024 0.460284 ATCTCACCGGTCGCAACATC 60.460 55.000 2.59 0.00 0.00 3.06
2461 3025 2.047655 TCACCGGTCGCAACATCC 60.048 61.111 2.59 0.00 0.00 3.51
2462 3026 2.047274 CACCGGTCGCAACATCCT 60.047 61.111 2.59 0.00 0.00 3.24
2463 3027 2.100631 CACCGGTCGCAACATCCTC 61.101 63.158 2.59 0.00 0.00 3.71
2464 3028 2.511600 CCGGTCGCAACATCCTCC 60.512 66.667 0.00 0.00 0.00 4.30
2465 3029 2.579201 CGGTCGCAACATCCTCCT 59.421 61.111 0.00 0.00 0.00 3.69
2466 3030 1.079127 CGGTCGCAACATCCTCCTT 60.079 57.895 0.00 0.00 0.00 3.36
2467 3031 0.673644 CGGTCGCAACATCCTCCTTT 60.674 55.000 0.00 0.00 0.00 3.11
2468 3032 0.804989 GGTCGCAACATCCTCCTTTG 59.195 55.000 0.00 0.00 0.00 2.77
2469 3033 1.610624 GGTCGCAACATCCTCCTTTGA 60.611 52.381 0.00 0.00 0.00 2.69
2470 3034 1.464997 GTCGCAACATCCTCCTTTGAC 59.535 52.381 0.00 0.00 0.00 3.18
2471 3035 0.443869 CGCAACATCCTCCTTTGACG 59.556 55.000 0.00 0.00 0.00 4.35
2472 3036 0.804989 GCAACATCCTCCTTTGACGG 59.195 55.000 0.00 0.00 0.00 4.79
2473 3037 1.882352 GCAACATCCTCCTTTGACGGT 60.882 52.381 0.00 0.00 0.00 4.83
2474 3038 2.504367 CAACATCCTCCTTTGACGGTT 58.496 47.619 0.00 0.00 0.00 4.44
2475 3039 2.185004 ACATCCTCCTTTGACGGTTG 57.815 50.000 0.00 0.00 0.00 3.77
2476 3040 1.420138 ACATCCTCCTTTGACGGTTGT 59.580 47.619 0.00 0.00 0.00 3.32
2477 3041 2.635915 ACATCCTCCTTTGACGGTTGTA 59.364 45.455 0.00 0.00 31.02 2.41
2478 3042 3.262420 CATCCTCCTTTGACGGTTGTAG 58.738 50.000 0.00 0.00 0.00 2.74
2479 3043 1.001633 TCCTCCTTTGACGGTTGTAGC 59.998 52.381 0.00 0.00 0.00 3.58
2480 3044 1.270625 CCTCCTTTGACGGTTGTAGCA 60.271 52.381 0.00 0.00 0.00 3.49
2481 3045 2.615493 CCTCCTTTGACGGTTGTAGCAT 60.615 50.000 0.00 0.00 0.00 3.79
2482 3046 3.074412 CTCCTTTGACGGTTGTAGCATT 58.926 45.455 0.00 0.00 0.00 3.56
2483 3047 3.482436 TCCTTTGACGGTTGTAGCATTT 58.518 40.909 0.00 0.00 0.00 2.32
2484 3048 3.886505 TCCTTTGACGGTTGTAGCATTTT 59.113 39.130 0.00 0.00 0.00 1.82
2485 3049 4.339814 TCCTTTGACGGTTGTAGCATTTTT 59.660 37.500 0.00 0.00 0.00 1.94
2486 3050 5.531659 TCCTTTGACGGTTGTAGCATTTTTA 59.468 36.000 0.00 0.00 0.00 1.52
2487 3051 6.207810 TCCTTTGACGGTTGTAGCATTTTTAT 59.792 34.615 0.00 0.00 0.00 1.40
2488 3052 6.526674 CCTTTGACGGTTGTAGCATTTTTATC 59.473 38.462 0.00 0.00 0.00 1.75
2489 3053 6.561737 TTGACGGTTGTAGCATTTTTATCA 57.438 33.333 0.00 0.00 0.00 2.15
2490 3054 6.176975 TGACGGTTGTAGCATTTTTATCAG 57.823 37.500 0.00 0.00 0.00 2.90
2491 3055 5.935206 TGACGGTTGTAGCATTTTTATCAGA 59.065 36.000 0.00 0.00 0.00 3.27
2492 3056 6.092122 TGACGGTTGTAGCATTTTTATCAGAG 59.908 38.462 0.00 0.00 0.00 3.35
2493 3057 5.163754 ACGGTTGTAGCATTTTTATCAGAGC 60.164 40.000 0.00 0.00 0.00 4.09
2494 3058 5.266242 GGTTGTAGCATTTTTATCAGAGCG 58.734 41.667 0.00 0.00 0.00 5.03
2495 3059 5.266242 GTTGTAGCATTTTTATCAGAGCGG 58.734 41.667 0.00 0.00 0.00 5.52
2496 3060 4.513442 TGTAGCATTTTTATCAGAGCGGT 58.487 39.130 0.00 0.00 0.00 5.68
2497 3061 4.941263 TGTAGCATTTTTATCAGAGCGGTT 59.059 37.500 0.00 0.00 0.00 4.44
2498 3062 4.361451 AGCATTTTTATCAGAGCGGTTG 57.639 40.909 0.00 0.00 0.00 3.77
2499 3063 3.758554 AGCATTTTTATCAGAGCGGTTGT 59.241 39.130 0.00 0.00 0.00 3.32
2500 3064 4.941263 AGCATTTTTATCAGAGCGGTTGTA 59.059 37.500 0.00 0.00 0.00 2.41
2501 3065 5.065218 AGCATTTTTATCAGAGCGGTTGTAG 59.935 40.000 0.00 0.00 0.00 2.74
2502 3066 4.939509 TTTTTATCAGAGCGGTTGTAGC 57.060 40.909 0.00 0.00 0.00 3.58
2503 3067 3.603158 TTTATCAGAGCGGTTGTAGCA 57.397 42.857 0.00 0.00 37.01 3.49
2504 3068 3.819564 TTATCAGAGCGGTTGTAGCAT 57.180 42.857 0.00 0.00 37.01 3.79
2505 3069 4.929819 TTATCAGAGCGGTTGTAGCATA 57.070 40.909 0.00 0.00 37.01 3.14
2506 3070 5.468540 TTATCAGAGCGGTTGTAGCATAT 57.531 39.130 0.00 0.00 37.01 1.78
2507 3071 3.097877 TCAGAGCGGTTGTAGCATATG 57.902 47.619 0.00 0.00 37.01 1.78
2508 3072 2.430694 TCAGAGCGGTTGTAGCATATGT 59.569 45.455 4.29 0.00 37.01 2.29
2509 3073 3.118775 TCAGAGCGGTTGTAGCATATGTT 60.119 43.478 4.29 0.08 37.01 2.71
2510 3074 3.001634 CAGAGCGGTTGTAGCATATGTTG 59.998 47.826 4.29 0.00 37.01 3.33
2511 3075 2.936498 GAGCGGTTGTAGCATATGTTGT 59.064 45.455 4.29 0.00 37.01 3.32
2512 3076 2.936498 AGCGGTTGTAGCATATGTTGTC 59.064 45.455 4.29 0.00 37.01 3.18
2513 3077 2.285602 GCGGTTGTAGCATATGTTGTCG 60.286 50.000 4.29 1.88 34.19 4.35
2514 3078 2.927477 CGGTTGTAGCATATGTTGTCGT 59.073 45.455 4.29 0.00 0.00 4.34
2515 3079 3.369756 CGGTTGTAGCATATGTTGTCGTT 59.630 43.478 4.29 0.00 0.00 3.85
2516 3080 4.563580 CGGTTGTAGCATATGTTGTCGTTA 59.436 41.667 4.29 0.00 0.00 3.18
2517 3081 5.499652 CGGTTGTAGCATATGTTGTCGTTAC 60.500 44.000 4.29 0.00 0.00 2.50
2518 3082 5.579511 GGTTGTAGCATATGTTGTCGTTACT 59.420 40.000 4.29 0.00 0.00 2.24
2519 3083 6.091713 GGTTGTAGCATATGTTGTCGTTACTT 59.908 38.462 4.29 0.00 0.00 2.24
2520 3084 6.641176 TGTAGCATATGTTGTCGTTACTTG 57.359 37.500 4.29 0.00 0.00 3.16
2521 3085 4.600012 AGCATATGTTGTCGTTACTTGC 57.400 40.909 4.29 0.00 0.00 4.01
2522 3086 4.000325 AGCATATGTTGTCGTTACTTGCA 59.000 39.130 4.29 0.00 0.00 4.08
2523 3087 4.093408 AGCATATGTTGTCGTTACTTGCAG 59.907 41.667 4.29 0.00 0.00 4.41
2524 3088 4.142902 GCATATGTTGTCGTTACTTGCAGT 60.143 41.667 4.29 0.00 0.00 4.40
2525 3089 5.062934 GCATATGTTGTCGTTACTTGCAGTA 59.937 40.000 4.29 0.00 0.00 2.74
2526 3090 6.238103 GCATATGTTGTCGTTACTTGCAGTAT 60.238 38.462 4.29 0.00 29.64 2.12
2527 3091 5.779806 ATGTTGTCGTTACTTGCAGTATC 57.220 39.130 0.00 0.00 29.64 2.24
2528 3092 3.671459 TGTTGTCGTTACTTGCAGTATCG 59.329 43.478 14.98 14.98 42.25 2.92
2529 3093 3.564235 TGTCGTTACTTGCAGTATCGT 57.436 42.857 17.99 4.30 41.83 3.73
2530 3094 3.904571 TGTCGTTACTTGCAGTATCGTT 58.095 40.909 17.99 0.00 41.83 3.85
2531 3095 3.671459 TGTCGTTACTTGCAGTATCGTTG 59.329 43.478 17.99 0.00 41.83 4.10
2532 3096 2.664568 TCGTTACTTGCAGTATCGTTGC 59.335 45.455 17.99 0.00 41.83 4.17
2542 3106 5.177374 GCAGTATCGTTGCAACATTTTTC 57.823 39.130 28.01 12.95 41.17 2.29
2543 3107 4.679197 GCAGTATCGTTGCAACATTTTTCA 59.321 37.500 28.01 3.91 41.17 2.69
2544 3108 5.387342 GCAGTATCGTTGCAACATTTTTCAC 60.387 40.000 28.01 14.70 41.17 3.18
2545 3109 5.116983 CAGTATCGTTGCAACATTTTTCACC 59.883 40.000 28.01 6.58 0.00 4.02
2546 3110 3.510388 TCGTTGCAACATTTTTCACCA 57.490 38.095 28.01 0.00 0.00 4.17
2547 3111 3.182967 TCGTTGCAACATTTTTCACCAC 58.817 40.909 28.01 0.00 0.00 4.16
2548 3112 2.283884 CGTTGCAACATTTTTCACCACC 59.716 45.455 28.01 0.00 0.00 4.61
2549 3113 2.215907 TGCAACATTTTTCACCACCG 57.784 45.000 0.00 0.00 0.00 4.94
2550 3114 1.478510 TGCAACATTTTTCACCACCGT 59.521 42.857 0.00 0.00 0.00 4.83
2551 3115 2.093973 TGCAACATTTTTCACCACCGTT 60.094 40.909 0.00 0.00 0.00 4.44
2552 3116 2.933260 GCAACATTTTTCACCACCGTTT 59.067 40.909 0.00 0.00 0.00 3.60
2553 3117 3.242252 GCAACATTTTTCACCACCGTTTG 60.242 43.478 0.00 0.00 0.00 2.93
2554 3118 3.878160 ACATTTTTCACCACCGTTTGT 57.122 38.095 0.00 0.00 0.00 2.83
2555 3119 4.985538 ACATTTTTCACCACCGTTTGTA 57.014 36.364 0.00 0.00 0.00 2.41
2556 3120 4.927422 ACATTTTTCACCACCGTTTGTAG 58.073 39.130 0.00 0.00 0.00 2.74
2557 3121 3.423996 TTTTTCACCACCGTTTGTAGC 57.576 42.857 0.00 0.00 0.00 3.58
2558 3122 2.039818 TTTCACCACCGTTTGTAGCA 57.960 45.000 0.00 0.00 0.00 3.49
2559 3123 2.264005 TTCACCACCGTTTGTAGCAT 57.736 45.000 0.00 0.00 0.00 3.79
2560 3124 2.264005 TCACCACCGTTTGTAGCATT 57.736 45.000 0.00 0.00 0.00 3.56
2561 3125 2.147958 TCACCACCGTTTGTAGCATTC 58.852 47.619 0.00 0.00 0.00 2.67
2562 3126 1.876799 CACCACCGTTTGTAGCATTCA 59.123 47.619 0.00 0.00 0.00 2.57
2563 3127 2.095768 CACCACCGTTTGTAGCATTCAG 60.096 50.000 0.00 0.00 0.00 3.02
2564 3128 1.135689 CCACCGTTTGTAGCATTCAGC 60.136 52.381 0.00 0.00 46.19 4.26
2573 3137 2.887360 GCATTCAGCCATGCCGTT 59.113 55.556 2.35 0.00 43.38 4.44
2574 3138 1.216178 GCATTCAGCCATGCCGTTT 59.784 52.632 2.35 0.00 43.38 3.60
2575 3139 0.455410 GCATTCAGCCATGCCGTTTA 59.545 50.000 2.35 0.00 43.38 2.01
2576 3140 1.798813 GCATTCAGCCATGCCGTTTAC 60.799 52.381 2.35 0.00 43.38 2.01
2577 3141 1.472082 CATTCAGCCATGCCGTTTACA 59.528 47.619 0.00 0.00 0.00 2.41
2578 3142 1.164411 TTCAGCCATGCCGTTTACAG 58.836 50.000 0.00 0.00 0.00 2.74
2579 3143 1.137404 CAGCCATGCCGTTTACAGC 59.863 57.895 0.00 0.00 0.00 4.40
2580 3144 1.303236 AGCCATGCCGTTTACAGCA 60.303 52.632 0.00 0.00 44.45 4.41
2582 3146 0.248621 GCCATGCCGTTTACAGCATC 60.249 55.000 0.73 0.00 46.58 3.91
2583 3147 1.093972 CCATGCCGTTTACAGCATCA 58.906 50.000 0.73 0.00 46.58 3.07
2584 3148 1.202177 CCATGCCGTTTACAGCATCAC 60.202 52.381 0.73 0.00 46.58 3.06
2585 3149 1.468127 CATGCCGTTTACAGCATCACA 59.532 47.619 0.73 0.00 46.58 3.58
2586 3150 1.598882 TGCCGTTTACAGCATCACAA 58.401 45.000 0.00 0.00 33.08 3.33
2587 3151 1.265635 TGCCGTTTACAGCATCACAAC 59.734 47.619 0.00 0.00 33.08 3.32
2588 3152 1.535462 GCCGTTTACAGCATCACAACT 59.465 47.619 0.00 0.00 0.00 3.16
2589 3153 2.739913 GCCGTTTACAGCATCACAACTA 59.260 45.455 0.00 0.00 0.00 2.24
2590 3154 3.424433 GCCGTTTACAGCATCACAACTAC 60.424 47.826 0.00 0.00 0.00 2.73
2591 3155 3.181534 CCGTTTACAGCATCACAACTACG 60.182 47.826 0.00 0.00 0.00 3.51
2592 3156 3.720920 CGTTTACAGCATCACAACTACGC 60.721 47.826 0.00 0.00 0.00 4.42
2593 3157 3.313012 TTACAGCATCACAACTACGCT 57.687 42.857 0.00 0.00 0.00 5.07
2594 3158 4.443913 TTACAGCATCACAACTACGCTA 57.556 40.909 0.00 0.00 0.00 4.26
2595 3159 3.313012 ACAGCATCACAACTACGCTAA 57.687 42.857 0.00 0.00 0.00 3.09
2596 3160 3.861840 ACAGCATCACAACTACGCTAAT 58.138 40.909 0.00 0.00 0.00 1.73
2597 3161 3.618594 ACAGCATCACAACTACGCTAATG 59.381 43.478 0.00 0.00 0.00 1.90
2598 3162 3.618594 CAGCATCACAACTACGCTAATGT 59.381 43.478 0.00 0.00 0.00 2.71
2599 3163 3.865745 AGCATCACAACTACGCTAATGTC 59.134 43.478 0.00 0.00 0.00 3.06
2600 3164 3.616821 GCATCACAACTACGCTAATGTCA 59.383 43.478 0.00 0.00 0.00 3.58
2601 3165 4.492570 GCATCACAACTACGCTAATGTCAC 60.493 45.833 0.00 0.00 0.00 3.67
2602 3166 4.514781 TCACAACTACGCTAATGTCACT 57.485 40.909 0.00 0.00 0.00 3.41
2603 3167 4.878439 TCACAACTACGCTAATGTCACTT 58.122 39.130 0.00 0.00 0.00 3.16
2604 3168 4.684242 TCACAACTACGCTAATGTCACTTG 59.316 41.667 0.00 0.00 0.00 3.16
2605 3169 4.684242 CACAACTACGCTAATGTCACTTGA 59.316 41.667 0.00 0.00 0.00 3.02
2606 3170 4.684703 ACAACTACGCTAATGTCACTTGAC 59.315 41.667 2.19 2.19 44.97 3.18
2607 3171 4.785511 ACTACGCTAATGTCACTTGACT 57.214 40.909 10.63 0.00 44.99 3.41
2608 3172 5.135508 ACTACGCTAATGTCACTTGACTT 57.864 39.130 10.63 1.63 44.99 3.01
2609 3173 6.263516 ACTACGCTAATGTCACTTGACTTA 57.736 37.500 10.63 6.16 44.99 2.24
2610 3174 6.323266 ACTACGCTAATGTCACTTGACTTAG 58.677 40.000 10.63 14.22 44.99 2.18
2611 3175 5.386958 ACGCTAATGTCACTTGACTTAGA 57.613 39.130 20.84 2.60 44.99 2.10
2612 3176 5.162075 ACGCTAATGTCACTTGACTTAGAC 58.838 41.667 20.84 14.84 44.99 2.59
2613 3177 5.047943 ACGCTAATGTCACTTGACTTAGACT 60.048 40.000 20.84 9.93 44.99 3.24
2614 3178 5.864474 CGCTAATGTCACTTGACTTAGACTT 59.136 40.000 20.84 7.41 44.99 3.01
2615 3179 6.034044 CGCTAATGTCACTTGACTTAGACTTC 59.966 42.308 20.84 10.22 44.99 3.01
2616 3180 6.034044 GCTAATGTCACTTGACTTAGACTTCG 59.966 42.308 20.84 6.17 44.99 3.79
2617 3181 4.913335 TGTCACTTGACTTAGACTTCGT 57.087 40.909 10.63 0.00 44.99 3.85
2618 3182 5.258456 TGTCACTTGACTTAGACTTCGTT 57.742 39.130 10.63 0.00 44.99 3.85
2619 3183 6.381481 TGTCACTTGACTTAGACTTCGTTA 57.619 37.500 10.63 0.00 44.99 3.18
2620 3184 6.798482 TGTCACTTGACTTAGACTTCGTTAA 58.202 36.000 10.63 0.00 44.99 2.01
2621 3185 6.916387 TGTCACTTGACTTAGACTTCGTTAAG 59.084 38.462 10.63 6.74 44.99 1.85
2622 3186 6.916932 GTCACTTGACTTAGACTTCGTTAAGT 59.083 38.462 1.92 7.65 43.76 2.24
2632 3196 4.144534 ACTTCGTTAAGTCTCAGTCGAC 57.855 45.455 7.70 7.70 42.42 4.20
2633 3197 3.814283 ACTTCGTTAAGTCTCAGTCGACT 59.186 43.478 13.58 13.58 42.42 4.18
2634 3198 3.808116 TCGTTAAGTCTCAGTCGACTG 57.192 47.619 34.76 34.76 43.14 3.51
2635 3199 6.481358 ACTTCGTTAAGTCTCAGTCGACTGA 61.481 44.000 38.24 38.24 45.13 3.41
2646 3210 4.335082 CAGTCGACTGAGTTCTAGACAG 57.665 50.000 36.73 7.99 46.59 3.51
2647 3211 3.997681 CAGTCGACTGAGTTCTAGACAGA 59.002 47.826 36.73 0.00 46.59 3.41
2648 3212 3.998341 AGTCGACTGAGTTCTAGACAGAC 59.002 47.826 19.30 8.11 35.85 3.51
2649 3213 3.125658 GTCGACTGAGTTCTAGACAGACC 59.874 52.174 8.70 6.10 35.85 3.85
2650 3214 2.420722 CGACTGAGTTCTAGACAGACCC 59.579 54.545 14.06 4.21 35.85 4.46
2651 3215 3.692690 GACTGAGTTCTAGACAGACCCT 58.307 50.000 14.06 0.00 35.85 4.34
2652 3216 4.083565 GACTGAGTTCTAGACAGACCCTT 58.916 47.826 14.06 0.00 35.85 3.95
2653 3217 4.484912 ACTGAGTTCTAGACAGACCCTTT 58.515 43.478 14.06 0.00 35.85 3.11
2654 3218 5.642165 ACTGAGTTCTAGACAGACCCTTTA 58.358 41.667 14.06 0.00 35.85 1.85
2655 3219 6.075984 ACTGAGTTCTAGACAGACCCTTTAA 58.924 40.000 14.06 0.00 35.85 1.52
2656 3220 6.553852 ACTGAGTTCTAGACAGACCCTTTAAA 59.446 38.462 14.06 0.00 35.85 1.52
2657 3221 7.070821 ACTGAGTTCTAGACAGACCCTTTAAAA 59.929 37.037 14.06 0.00 35.85 1.52
2664 3228 9.543231 TCTAGACAGACCCTTTAAAAAGATCTA 57.457 33.333 0.00 2.00 38.28 1.98
2669 3233 3.937079 ACCCTTTAAAAAGATCTACCGCG 59.063 43.478 0.00 0.00 38.28 6.46
2726 3290 0.976590 AAGTCTCCCCCTACTTCGCC 60.977 60.000 0.00 0.00 30.08 5.54
2744 3308 1.134848 GCCACAAAGGTCTTGTTGCAA 60.135 47.619 0.00 0.00 39.81 4.08
2748 3312 4.635324 CCACAAAGGTCTTGTTGCAAAAAT 59.365 37.500 1.65 0.00 0.00 1.82
2773 3337 5.502153 TTACAACAAAGGTTACGTTGCAT 57.498 34.783 0.00 0.00 42.98 3.96
2814 3378 2.171027 AGGTTGTGTCGTGGGACTTTTA 59.829 45.455 0.00 0.00 43.79 1.52
2832 3396 7.100458 ACTTTTATGCAACAGAGTTCTTGTT 57.900 32.000 0.00 0.00 0.00 2.83
2840 3404 6.989759 TGCAACAGAGTTCTTGTTGTAGATTA 59.010 34.615 16.57 0.00 43.24 1.75
2855 3423 8.845227 TGTTGTAGATTATTTTTGCAACAGAGA 58.155 29.630 0.00 0.00 39.45 3.10
2920 3488 1.605232 TGTCTAAGTTGCAGTCGTCGA 59.395 47.619 0.00 0.00 0.00 4.20
2975 3543 5.001232 TGCAAGATGAAGTAAAGTGGTACC 58.999 41.667 4.43 4.43 0.00 3.34
2982 3550 4.020839 TGAAGTAAAGTGGTACCTGGTAGC 60.021 45.833 25.25 25.25 37.09 3.58
3003 3572 3.826729 GCCAAGGGAAATAACAGACTGTT 59.173 43.478 23.61 23.61 43.88 3.16
3019 3588 3.041351 TTTGCGAGCGTGCGTGAT 61.041 55.556 0.00 0.00 37.81 3.06
3022 3591 1.285668 TTGCGAGCGTGCGTGATAAA 61.286 50.000 0.00 0.00 37.81 1.40
3034 3603 3.065233 TGCGTGATAAAGCATGGATCAAC 59.935 43.478 0.00 0.00 38.59 3.18
3050 3619 0.586319 CAACGCGATCCAACAGTTGT 59.414 50.000 15.93 0.00 37.84 3.32
3071 3640 2.670148 GGGTGGCGGAACTCTCCAT 61.670 63.158 0.00 0.00 42.58 3.41
3311 3929 5.413523 CAGATTCATCAGTTCATTGGTCACA 59.586 40.000 0.00 0.00 0.00 3.58
3640 5816 2.963782 ACCGTCCCATGACCTAATAGAC 59.036 50.000 0.00 0.00 38.32 2.59
3836 6012 3.541242 ACCAAGATGGATGGGACAAAA 57.459 42.857 2.85 0.00 41.74 2.44
3852 6028 4.871513 GACAAAAGGTCATTTCTTCCACC 58.128 43.478 0.00 0.00 46.19 4.61
4058 6237 4.448210 ACGGTATCACCTCGCATAAAAAT 58.552 39.130 0.00 0.00 35.66 1.82
4101 6280 3.933861 ATCACCTTGGGGTAGATCAAC 57.066 47.619 0.00 0.00 45.41 3.18
4118 6297 1.339610 CAACATGAAAAGCACGGGGAA 59.660 47.619 0.00 0.00 0.00 3.97
4140 6319 6.310467 GGAACTTGTTGTTTCCAAAGTCTTTC 59.690 38.462 0.00 0.00 39.30 2.62
4205 6391 5.786264 ATGAAGAATCTGATCCATTTGCC 57.214 39.130 0.00 0.00 0.00 4.52
4270 6456 1.765074 GTCCCCCAAACAGTAGCCA 59.235 57.895 0.00 0.00 0.00 4.75
4306 6492 7.439356 CGAGCAGAATCAGGTAAATCTTCATTA 59.561 37.037 0.00 0.00 0.00 1.90
4478 6711 4.202284 GCAATACTAGGATCCCACCGTTTA 60.202 45.833 8.55 0.00 34.73 2.01
4712 6981 6.917217 AGATCAATGCTTAGCAACTTAGAC 57.083 37.500 12.08 0.33 43.62 2.59
4741 7011 7.408756 ACTGCATATTATCAAGCCTTCAAAA 57.591 32.000 0.00 0.00 0.00 2.44
4743 7013 9.135189 ACTGCATATTATCAAGCCTTCAAAATA 57.865 29.630 0.00 0.00 0.00 1.40
4964 7243 4.265904 TCACTGTCATTCATGTTACCGT 57.734 40.909 0.00 0.00 0.00 4.83
5066 7346 1.203100 ACCCTGAGATGCAGCCTTTTT 60.203 47.619 0.00 0.00 43.50 1.94
5190 7470 0.037303 CTGGAGGATGCACCACTGTT 59.963 55.000 0.00 0.00 42.04 3.16
5218 7498 2.672996 GAATGCCTGCCACACGGT 60.673 61.111 0.00 0.00 33.28 4.83
5243 7523 1.837051 CTGGATGCCGCCTACCCTA 60.837 63.158 0.00 0.00 0.00 3.53
5343 7629 1.006571 CCGTAAGTGCACCGAGTGT 60.007 57.895 14.63 0.00 35.75 3.55
5417 7710 3.153369 TGTGTGTGTTTATGGCAGGAT 57.847 42.857 0.00 0.00 0.00 3.24
5444 7737 0.681887 TCGGGTCGCAGGACATCTTA 60.682 55.000 0.00 0.00 45.28 2.10
5580 7913 2.440627 TGCATATGATCCTGGAGCTTGT 59.559 45.455 13.80 2.26 0.00 3.16
5581 7914 3.117776 TGCATATGATCCTGGAGCTTGTT 60.118 43.478 13.80 0.00 0.00 2.83
5957 8308 7.899178 TGACATGTGTTTAGTTATGTAGGTG 57.101 36.000 1.15 0.00 34.18 4.00
5987 8338 5.114764 TGAGCACAATATGGATTTGAGGA 57.885 39.130 0.00 0.00 0.00 3.71
6074 8434 0.459585 GTCGATGGGCGTTTAGAGCA 60.460 55.000 0.00 0.00 41.80 4.26
6103 8463 7.427214 GGTTTGCTACTTGTGGTTGTAATTAA 58.573 34.615 0.00 0.00 0.00 1.40
6106 8466 7.385778 TGCTACTTGTGGTTGTAATTAATCC 57.614 36.000 0.00 0.00 0.00 3.01
6123 8483 1.533625 TCCACCCAGAGCATTTTTCG 58.466 50.000 0.00 0.00 0.00 3.46
6195 8555 2.917701 TGGAACATTAGCAATGCACG 57.082 45.000 8.35 0.00 42.69 5.34
6211 8571 2.270986 ACGAGGGGACACACGTACC 61.271 63.158 0.00 0.00 46.86 3.34
6212 8572 1.975407 CGAGGGGACACACGTACCT 60.975 63.158 0.00 0.00 46.74 3.08
6266 8627 4.884668 TCAAAGTCGAGAACCCTTACAT 57.115 40.909 0.00 0.00 0.00 2.29
6330 8691 5.520632 TCTCGTTTTAGAATCGATGCTAGG 58.479 41.667 12.93 0.98 33.26 3.02
6333 8694 4.084849 CGTTTTAGAATCGATGCTAGGCAG 60.085 45.833 12.93 3.93 43.65 4.85
6349 8710 5.294552 GCTAGGCAGTTTACTCGATTCAAAT 59.705 40.000 0.00 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
402 415 7.970614 CCATACTACTTCATTCCAAAAAGAAGC 59.029 37.037 0.00 0.00 41.64 3.86
474 487 3.939592 GCAAGGGAAGTGAGTTATACCAC 59.060 47.826 0.00 0.00 0.00 4.16
500 513 9.509855 CGGTCAGTATTATTATCTATCTCTTGC 57.490 37.037 0.00 0.00 0.00 4.01
516 529 7.822822 AGAGTAATACTTTTTGCGGTCAGTATT 59.177 33.333 12.91 12.91 42.47 1.89
517 530 7.328737 AGAGTAATACTTTTTGCGGTCAGTAT 58.671 34.615 0.00 0.00 34.54 2.12
519 532 5.548406 AGAGTAATACTTTTTGCGGTCAGT 58.452 37.500 0.00 0.00 0.00 3.41
521 534 6.870971 AAAGAGTAATACTTTTTGCGGTCA 57.129 33.333 7.95 0.00 32.21 4.02
607 645 4.000325 GGAACTCTCTGAGAAGCCTTTTC 59.000 47.826 8.95 4.98 33.32 2.29
643 682 6.147864 TGCTTCTTGCTTGTTGTTAGATTT 57.852 33.333 0.00 0.00 43.37 2.17
654 696 1.000938 GGGTGTCTTGCTTCTTGCTTG 60.001 52.381 0.00 0.00 43.37 4.01
655 697 1.322442 GGGTGTCTTGCTTCTTGCTT 58.678 50.000 0.00 0.00 43.37 3.91
656 698 0.538287 GGGGTGTCTTGCTTCTTGCT 60.538 55.000 0.00 0.00 43.37 3.91
657 699 0.823356 TGGGGTGTCTTGCTTCTTGC 60.823 55.000 0.00 0.00 43.25 4.01
658 700 1.542915 CATGGGGTGTCTTGCTTCTTG 59.457 52.381 0.00 0.00 0.00 3.02
661 703 1.598701 GCCATGGGGTGTCTTGCTTC 61.599 60.000 15.13 0.00 36.17 3.86
670 712 2.282816 TCGGTTTGCCATGGGGTG 60.283 61.111 15.13 0.00 36.17 4.61
671 713 2.035626 CTCGGTTTGCCATGGGGT 59.964 61.111 15.13 0.00 36.17 4.95
672 714 2.035626 ACTCGGTTTGCCATGGGG 59.964 61.111 15.13 0.00 34.09 4.96
1052 1107 1.153329 GAGAGGACGAGCCGAGAGA 60.153 63.158 1.50 0.00 43.43 3.10
1209 1406 0.673985 CTACCGGAATCCATCGCTCA 59.326 55.000 9.46 0.00 0.00 4.26
1213 1410 0.033504 CCACCTACCGGAATCCATCG 59.966 60.000 9.46 0.00 0.00 3.84
1227 1424 1.704641 GGCTCCTTCAAAAACCACCT 58.295 50.000 0.00 0.00 0.00 4.00
1228 1425 0.679505 GGGCTCCTTCAAAAACCACC 59.320 55.000 0.00 0.00 0.00 4.61
1242 1439 4.235762 TTATCAGCGCCCGGGCTC 62.236 66.667 41.01 35.10 42.53 4.70
1243 1440 4.547367 GTTATCAGCGCCCGGGCT 62.547 66.667 41.01 25.80 46.13 5.19
1247 1444 1.222115 GCTAAGGTTATCAGCGCCCG 61.222 60.000 2.29 0.00 0.00 6.13
1251 1448 2.541762 GCTCAAGCTAAGGTTATCAGCG 59.458 50.000 0.00 0.00 40.29 5.18
1395 1600 4.279043 AAAAACCGCACCGCCAGC 62.279 61.111 0.00 0.00 0.00 4.85
1452 1666 1.151668 CACTTCACTGCTTCCTTCGG 58.848 55.000 0.00 0.00 0.00 4.30
1474 1704 2.601804 GTTCTCTGCTTCCGTCTTCTC 58.398 52.381 0.00 0.00 0.00 2.87
1532 1764 0.721718 GCTGCAGCGACGAGTAAAAT 59.278 50.000 25.23 0.00 0.00 1.82
1663 2009 7.442666 GTCTCCACTAAACAGATCAGAGTTTTT 59.557 37.037 13.67 0.00 38.71 1.94
1664 2010 6.931840 GTCTCCACTAAACAGATCAGAGTTTT 59.068 38.462 13.67 0.00 38.71 2.43
1665 2011 6.268847 AGTCTCCACTAAACAGATCAGAGTTT 59.731 38.462 13.18 13.18 40.68 2.66
1666 2012 5.777732 AGTCTCCACTAAACAGATCAGAGTT 59.222 40.000 0.00 0.00 0.00 3.01
1667 2013 5.184864 CAGTCTCCACTAAACAGATCAGAGT 59.815 44.000 0.00 0.00 0.00 3.24
1668 2014 5.417266 TCAGTCTCCACTAAACAGATCAGAG 59.583 44.000 0.00 0.00 0.00 3.35
1669 2015 5.325239 TCAGTCTCCACTAAACAGATCAGA 58.675 41.667 0.00 0.00 0.00 3.27
1670 2016 5.651387 TCAGTCTCCACTAAACAGATCAG 57.349 43.478 0.00 0.00 0.00 2.90
1671 2017 5.954752 AGATCAGTCTCCACTAAACAGATCA 59.045 40.000 8.99 0.00 38.00 2.92
1672 2018 6.272318 CAGATCAGTCTCCACTAAACAGATC 58.728 44.000 0.00 0.00 36.65 2.75
1673 2019 5.128499 CCAGATCAGTCTCCACTAAACAGAT 59.872 44.000 0.00 0.00 30.42 2.90
1871 2321 5.240891 CAGCAAACAGAGACCTGAATAAGA 58.759 41.667 0.00 0.00 43.02 2.10
1883 2333 3.632189 GTTAAACCTGCAGCAAACAGAG 58.368 45.455 8.66 0.00 37.32 3.35
1909 2359 1.474478 CAGCAGTGGAGTCTATGACGT 59.526 52.381 0.00 0.00 37.67 4.34
1968 2452 7.325660 ACAACAAGCAAGATATCGAATGATT 57.674 32.000 9.49 7.01 35.99 2.57
1981 2480 6.203338 AGCCAATGATTTAAACAACAAGCAAG 59.797 34.615 0.00 0.00 0.00 4.01
2265 2829 2.487274 TAAAAGACCCGCGGGCCAAT 62.487 55.000 43.58 25.63 39.32 3.16
2277 2841 4.385748 CAGCAATCCCGCTTTTTAAAAGAC 59.614 41.667 20.14 10.71 41.38 3.01
2288 2852 1.747355 CTGATTTTCAGCAATCCCGCT 59.253 47.619 0.00 0.00 45.21 5.52
2289 2853 2.199291 CTGATTTTCAGCAATCCCGC 57.801 50.000 0.00 0.00 37.72 6.13
2306 2870 5.154932 ACTTCGTTAAATCTCAGTCGACTG 58.845 41.667 34.76 34.76 45.08 3.51
2307 2871 5.181622 AGACTTCGTTAAATCTCAGTCGACT 59.818 40.000 13.58 13.58 36.56 4.18
2308 2872 5.392286 AGACTTCGTTAAATCTCAGTCGAC 58.608 41.667 7.70 7.70 36.56 4.20
2309 2873 5.180680 TGAGACTTCGTTAAATCTCAGTCGA 59.819 40.000 0.00 0.00 41.99 4.20
2310 2874 5.391449 TGAGACTTCGTTAAATCTCAGTCG 58.609 41.667 0.00 0.00 41.99 4.18
2314 2878 5.180680 TCGACTGAGACTTCGTTAAATCTCA 59.819 40.000 3.03 3.03 44.05 3.27
2315 2879 5.508922 GTCGACTGAGACTTCGTTAAATCTC 59.491 44.000 8.70 0.00 38.09 2.75
2316 2880 5.392286 GTCGACTGAGACTTCGTTAAATCT 58.608 41.667 8.70 0.00 38.09 2.40
2317 2881 4.558080 GGTCGACTGAGACTTCGTTAAATC 59.442 45.833 16.46 0.00 40.76 2.17
2318 2882 4.217983 AGGTCGACTGAGACTTCGTTAAAT 59.782 41.667 16.46 0.00 40.76 1.40
2319 2883 3.567164 AGGTCGACTGAGACTTCGTTAAA 59.433 43.478 16.46 0.00 40.76 1.52
2320 2884 3.144506 AGGTCGACTGAGACTTCGTTAA 58.855 45.455 16.46 0.00 40.76 2.01
2321 2885 2.775890 AGGTCGACTGAGACTTCGTTA 58.224 47.619 16.46 0.00 40.76 3.18
2322 2886 1.606903 AGGTCGACTGAGACTTCGTT 58.393 50.000 16.46 0.00 40.76 3.85
2323 2887 1.267261 CAAGGTCGACTGAGACTTCGT 59.733 52.381 16.46 0.00 40.76 3.85
2324 2888 1.970447 CAAGGTCGACTGAGACTTCG 58.030 55.000 16.46 1.90 40.76 3.79
2325 2889 1.000163 TGCAAGGTCGACTGAGACTTC 60.000 52.381 16.46 5.12 40.76 3.01
2326 2890 1.000283 CTGCAAGGTCGACTGAGACTT 60.000 52.381 16.46 6.85 40.76 3.01
2327 2891 0.600557 CTGCAAGGTCGACTGAGACT 59.399 55.000 16.46 0.00 40.76 3.24
2328 2892 1.011451 GCTGCAAGGTCGACTGAGAC 61.011 60.000 16.46 0.00 40.25 3.36
2329 2893 1.290324 GCTGCAAGGTCGACTGAGA 59.710 57.895 16.46 0.00 0.00 3.27
2330 2894 0.390866 ATGCTGCAAGGTCGACTGAG 60.391 55.000 16.46 6.42 0.00 3.35
2331 2895 0.035317 AATGCTGCAAGGTCGACTGA 59.965 50.000 16.46 0.00 0.00 3.41
2332 2896 0.877071 AAATGCTGCAAGGTCGACTG 59.123 50.000 16.46 8.03 0.00 3.51
2333 2897 1.267806 CAAAATGCTGCAAGGTCGACT 59.732 47.619 16.46 0.00 0.00 4.18
2334 2898 1.001378 ACAAAATGCTGCAAGGTCGAC 60.001 47.619 6.36 7.13 0.00 4.20
2335 2899 1.266718 GACAAAATGCTGCAAGGTCGA 59.733 47.619 6.36 0.00 0.00 4.20
2336 2900 1.666888 GGACAAAATGCTGCAAGGTCG 60.667 52.381 6.36 0.00 0.00 4.79
2337 2901 1.337167 GGGACAAAATGCTGCAAGGTC 60.337 52.381 6.36 11.53 0.00 3.85
2338 2902 0.681175 GGGACAAAATGCTGCAAGGT 59.319 50.000 6.36 2.28 0.00 3.50
2339 2903 0.680618 TGGGACAAAATGCTGCAAGG 59.319 50.000 6.36 0.00 31.92 3.61
2353 2917 3.915437 AAATGTTGTGAACGATGGGAC 57.085 42.857 0.00 0.00 0.00 4.46
2354 2918 4.927978 AAAAATGTTGTGAACGATGGGA 57.072 36.364 0.00 0.00 0.00 4.37
2372 2936 2.660572 TGTTGCAGCCAGTAGGAAAAA 58.339 42.857 0.00 0.00 36.89 1.94
2373 2937 2.356665 TGTTGCAGCCAGTAGGAAAA 57.643 45.000 0.00 0.00 36.89 2.29
2374 2938 2.436417 GATGTTGCAGCCAGTAGGAAA 58.564 47.619 0.00 0.00 36.89 3.13
2375 2939 1.340017 GGATGTTGCAGCCAGTAGGAA 60.340 52.381 0.00 0.00 40.02 3.36
2376 2940 0.253044 GGATGTTGCAGCCAGTAGGA 59.747 55.000 0.00 0.00 40.02 2.94
2377 2941 1.091771 CGGATGTTGCAGCCAGTAGG 61.092 60.000 0.00 0.00 40.32 3.18
2378 2942 1.709147 GCGGATGTTGCAGCCAGTAG 61.709 60.000 0.00 0.00 40.32 2.57
2379 2943 1.745115 GCGGATGTTGCAGCCAGTA 60.745 57.895 0.00 0.00 40.32 2.74
2380 2944 3.058160 GCGGATGTTGCAGCCAGT 61.058 61.111 0.00 0.00 40.32 4.00
2381 2945 3.818787 GGCGGATGTTGCAGCCAG 61.819 66.667 7.48 0.00 46.54 4.85
2384 2948 2.180017 CAAGGCGGATGTTGCAGC 59.820 61.111 0.00 0.00 0.00 5.25
2385 2949 2.180017 GCAAGGCGGATGTTGCAG 59.820 61.111 3.80 0.00 46.83 4.41
2388 2952 1.526575 AACCAGCAAGGCGGATGTTG 61.527 55.000 6.19 0.00 43.14 3.33
2389 2953 1.228552 AACCAGCAAGGCGGATGTT 60.229 52.632 6.19 0.00 43.14 2.71
2390 2954 1.973281 CAACCAGCAAGGCGGATGT 60.973 57.895 6.19 0.00 43.14 3.06
2391 2955 0.676466 TACAACCAGCAAGGCGGATG 60.676 55.000 6.19 6.86 43.14 3.51
2392 2956 0.037590 TTACAACCAGCAAGGCGGAT 59.962 50.000 6.19 0.00 43.14 4.18
2393 2957 0.887387 GTTACAACCAGCAAGGCGGA 60.887 55.000 6.19 0.00 43.14 5.54
2394 2958 1.169661 TGTTACAACCAGCAAGGCGG 61.170 55.000 0.00 0.00 43.14 6.13
2395 2959 0.881118 ATGTTACAACCAGCAAGGCG 59.119 50.000 0.00 0.00 43.14 5.52
2396 2960 1.613437 ACATGTTACAACCAGCAAGGC 59.387 47.619 0.00 0.00 43.14 4.35
2397 2961 2.095768 CGACATGTTACAACCAGCAAGG 60.096 50.000 0.00 0.00 45.67 3.61
2398 2962 2.548057 ACGACATGTTACAACCAGCAAG 59.452 45.455 0.00 0.00 0.00 4.01
2399 2963 2.546368 GACGACATGTTACAACCAGCAA 59.454 45.455 0.00 0.00 0.00 3.91
2400 2964 2.139917 GACGACATGTTACAACCAGCA 58.860 47.619 0.00 0.00 0.00 4.41
2401 2965 1.463444 GGACGACATGTTACAACCAGC 59.537 52.381 0.00 0.00 0.00 4.85
2402 2966 2.993899 GAGGACGACATGTTACAACCAG 59.006 50.000 0.00 0.00 0.00 4.00
2403 2967 2.608506 CGAGGACGACATGTTACAACCA 60.609 50.000 0.00 0.00 42.66 3.67
2404 2968 1.990563 CGAGGACGACATGTTACAACC 59.009 52.381 0.00 0.19 42.66 3.77
2405 2969 2.660236 GACGAGGACGACATGTTACAAC 59.340 50.000 0.00 0.00 42.66 3.32
2406 2970 2.666344 CGACGAGGACGACATGTTACAA 60.666 50.000 0.00 0.00 42.66 2.41
2407 2971 1.135888 CGACGAGGACGACATGTTACA 60.136 52.381 0.00 0.00 42.66 2.41
2408 2972 1.129251 TCGACGAGGACGACATGTTAC 59.871 52.381 0.00 0.00 42.66 2.50
2409 2973 1.441738 TCGACGAGGACGACATGTTA 58.558 50.000 0.00 0.00 42.66 2.41
2410 2974 0.809385 ATCGACGAGGACGACATGTT 59.191 50.000 3.01 0.00 42.37 2.71
2411 2975 0.809385 AATCGACGAGGACGACATGT 59.191 50.000 0.00 0.00 42.37 3.21
2412 2976 1.191944 CAATCGACGAGGACGACATG 58.808 55.000 3.01 0.00 42.37 3.21
2413 2977 0.809385 ACAATCGACGAGGACGACAT 59.191 50.000 3.01 0.00 42.37 3.06
2414 2978 1.395954 CTACAATCGACGAGGACGACA 59.604 52.381 3.01 0.00 42.37 4.35
2415 2979 1.855223 GCTACAATCGACGAGGACGAC 60.855 57.143 3.01 0.00 42.37 4.34
2416 2980 0.376152 GCTACAATCGACGAGGACGA 59.624 55.000 3.01 0.00 43.65 4.20
2417 2981 0.098200 TGCTACAATCGACGAGGACG 59.902 55.000 3.01 0.00 45.75 4.79
2418 2982 1.546834 GTGCTACAATCGACGAGGAC 58.453 55.000 3.01 0.00 0.00 3.85
2419 2983 0.098200 CGTGCTACAATCGACGAGGA 59.902 55.000 3.01 0.00 33.64 3.71
2420 2984 0.179171 ACGTGCTACAATCGACGAGG 60.179 55.000 3.01 0.36 35.77 4.63
2421 2985 1.614385 AACGTGCTACAATCGACGAG 58.386 50.000 3.01 0.00 35.77 4.18
2422 2986 2.898181 TAACGTGCTACAATCGACGA 57.102 45.000 0.00 0.00 35.77 4.20
2423 2987 3.360533 AGATAACGTGCTACAATCGACG 58.639 45.455 0.00 0.00 37.82 5.12
2424 2988 4.204573 GTGAGATAACGTGCTACAATCGAC 59.795 45.833 0.00 0.00 0.00 4.20
2425 2989 4.348656 GTGAGATAACGTGCTACAATCGA 58.651 43.478 0.00 0.00 0.00 3.59
2426 2990 3.486108 GGTGAGATAACGTGCTACAATCG 59.514 47.826 0.00 0.00 0.00 3.34
2427 2991 3.486108 CGGTGAGATAACGTGCTACAATC 59.514 47.826 0.00 0.00 0.00 2.67
2428 2992 3.444916 CGGTGAGATAACGTGCTACAAT 58.555 45.455 0.00 0.00 0.00 2.71
2429 2993 2.416296 CCGGTGAGATAACGTGCTACAA 60.416 50.000 0.00 0.00 0.00 2.41
2430 2994 1.133598 CCGGTGAGATAACGTGCTACA 59.866 52.381 0.00 0.00 0.00 2.74
2431 2995 1.133790 ACCGGTGAGATAACGTGCTAC 59.866 52.381 6.12 0.00 0.00 3.58
2432 2996 1.402968 GACCGGTGAGATAACGTGCTA 59.597 52.381 14.63 0.00 0.00 3.49
2433 2997 0.172803 GACCGGTGAGATAACGTGCT 59.827 55.000 14.63 0.00 0.00 4.40
2434 2998 1.138047 CGACCGGTGAGATAACGTGC 61.138 60.000 14.63 0.00 0.00 5.34
2435 2999 1.138047 GCGACCGGTGAGATAACGTG 61.138 60.000 14.63 0.00 0.00 4.49
2436 3000 1.138247 GCGACCGGTGAGATAACGT 59.862 57.895 14.63 0.00 0.00 3.99
2437 3001 0.457166 TTGCGACCGGTGAGATAACG 60.457 55.000 14.63 8.84 0.00 3.18
2438 3002 0.997196 GTTGCGACCGGTGAGATAAC 59.003 55.000 14.63 11.10 0.00 1.89
2439 3003 0.604073 TGTTGCGACCGGTGAGATAA 59.396 50.000 14.63 2.24 0.00 1.75
2440 3004 0.821517 ATGTTGCGACCGGTGAGATA 59.178 50.000 14.63 0.00 0.00 1.98
2441 3005 0.460284 GATGTTGCGACCGGTGAGAT 60.460 55.000 14.63 0.00 0.00 2.75
2442 3006 1.080093 GATGTTGCGACCGGTGAGA 60.080 57.895 14.63 0.00 0.00 3.27
2443 3007 2.100631 GGATGTTGCGACCGGTGAG 61.101 63.158 14.63 7.14 0.00 3.51
2444 3008 2.047655 GGATGTTGCGACCGGTGA 60.048 61.111 14.63 0.00 0.00 4.02
2445 3009 2.047274 AGGATGTTGCGACCGGTG 60.047 61.111 14.63 5.62 0.00 4.94
2446 3010 2.264794 GAGGATGTTGCGACCGGT 59.735 61.111 6.92 6.92 0.00 5.28
2447 3011 2.511600 GGAGGATGTTGCGACCGG 60.512 66.667 0.00 0.00 0.00 5.28
2448 3012 0.673644 AAAGGAGGATGTTGCGACCG 60.674 55.000 0.45 0.00 0.00 4.79
2449 3013 0.804989 CAAAGGAGGATGTTGCGACC 59.195 55.000 0.45 0.00 0.00 4.79
2450 3014 1.464997 GTCAAAGGAGGATGTTGCGAC 59.535 52.381 0.00 0.00 0.00 5.19
2451 3015 1.808411 GTCAAAGGAGGATGTTGCGA 58.192 50.000 0.00 0.00 0.00 5.10
2452 3016 0.443869 CGTCAAAGGAGGATGTTGCG 59.556 55.000 0.00 0.00 0.00 4.85
2453 3017 0.804989 CCGTCAAAGGAGGATGTTGC 59.195 55.000 0.00 0.00 0.00 4.17
2454 3018 2.185004 ACCGTCAAAGGAGGATGTTG 57.815 50.000 0.00 0.00 34.73 3.33
2455 3019 2.158667 ACAACCGTCAAAGGAGGATGTT 60.159 45.455 0.00 0.00 30.14 2.71
2456 3020 1.420138 ACAACCGTCAAAGGAGGATGT 59.580 47.619 0.00 0.00 34.73 3.06
2457 3021 2.185004 ACAACCGTCAAAGGAGGATG 57.815 50.000 0.00 0.00 34.73 3.51
2458 3022 2.354805 GCTACAACCGTCAAAGGAGGAT 60.355 50.000 0.00 0.00 34.73 3.24
2459 3023 1.001633 GCTACAACCGTCAAAGGAGGA 59.998 52.381 0.00 0.00 34.73 3.71
2460 3024 1.270625 TGCTACAACCGTCAAAGGAGG 60.271 52.381 0.00 0.00 34.73 4.30
2461 3025 2.163818 TGCTACAACCGTCAAAGGAG 57.836 50.000 0.00 0.00 34.73 3.69
2462 3026 2.851263 ATGCTACAACCGTCAAAGGA 57.149 45.000 0.00 0.00 34.73 3.36
2463 3027 3.915437 AAATGCTACAACCGTCAAAGG 57.085 42.857 0.00 0.00 37.30 3.11
2464 3028 7.081349 TGATAAAAATGCTACAACCGTCAAAG 58.919 34.615 0.00 0.00 0.00 2.77
2465 3029 6.971602 TGATAAAAATGCTACAACCGTCAAA 58.028 32.000 0.00 0.00 0.00 2.69
2466 3030 6.428465 TCTGATAAAAATGCTACAACCGTCAA 59.572 34.615 0.00 0.00 0.00 3.18
2467 3031 5.935206 TCTGATAAAAATGCTACAACCGTCA 59.065 36.000 0.00 0.00 0.00 4.35
2468 3032 6.417191 TCTGATAAAAATGCTACAACCGTC 57.583 37.500 0.00 0.00 0.00 4.79
2469 3033 5.163754 GCTCTGATAAAAATGCTACAACCGT 60.164 40.000 0.00 0.00 0.00 4.83
2470 3034 5.266242 GCTCTGATAAAAATGCTACAACCG 58.734 41.667 0.00 0.00 0.00 4.44
2471 3035 5.266242 CGCTCTGATAAAAATGCTACAACC 58.734 41.667 0.00 0.00 0.00 3.77
2472 3036 5.163754 ACCGCTCTGATAAAAATGCTACAAC 60.164 40.000 0.00 0.00 0.00 3.32
2473 3037 4.941263 ACCGCTCTGATAAAAATGCTACAA 59.059 37.500 0.00 0.00 0.00 2.41
2474 3038 4.513442 ACCGCTCTGATAAAAATGCTACA 58.487 39.130 0.00 0.00 0.00 2.74
2475 3039 5.163754 ACAACCGCTCTGATAAAAATGCTAC 60.164 40.000 0.00 0.00 0.00 3.58
2476 3040 4.941263 ACAACCGCTCTGATAAAAATGCTA 59.059 37.500 0.00 0.00 0.00 3.49
2477 3041 3.758554 ACAACCGCTCTGATAAAAATGCT 59.241 39.130 0.00 0.00 0.00 3.79
2478 3042 4.096732 ACAACCGCTCTGATAAAAATGC 57.903 40.909 0.00 0.00 0.00 3.56
2479 3043 5.163764 TGCTACAACCGCTCTGATAAAAATG 60.164 40.000 0.00 0.00 0.00 2.32
2480 3044 4.941263 TGCTACAACCGCTCTGATAAAAAT 59.059 37.500 0.00 0.00 0.00 1.82
2481 3045 4.320023 TGCTACAACCGCTCTGATAAAAA 58.680 39.130 0.00 0.00 0.00 1.94
2482 3046 3.932822 TGCTACAACCGCTCTGATAAAA 58.067 40.909 0.00 0.00 0.00 1.52
2483 3047 3.603158 TGCTACAACCGCTCTGATAAA 57.397 42.857 0.00 0.00 0.00 1.40
2484 3048 3.819564 ATGCTACAACCGCTCTGATAA 57.180 42.857 0.00 0.00 0.00 1.75
2485 3049 4.280929 ACATATGCTACAACCGCTCTGATA 59.719 41.667 1.58 0.00 0.00 2.15
2486 3050 3.070159 ACATATGCTACAACCGCTCTGAT 59.930 43.478 1.58 0.00 0.00 2.90
2487 3051 2.430694 ACATATGCTACAACCGCTCTGA 59.569 45.455 1.58 0.00 0.00 3.27
2488 3052 2.826428 ACATATGCTACAACCGCTCTG 58.174 47.619 1.58 0.00 0.00 3.35
2489 3053 3.198068 CAACATATGCTACAACCGCTCT 58.802 45.455 1.58 0.00 0.00 4.09
2490 3054 2.936498 ACAACATATGCTACAACCGCTC 59.064 45.455 1.58 0.00 0.00 5.03
2491 3055 2.936498 GACAACATATGCTACAACCGCT 59.064 45.455 1.58 0.00 0.00 5.52
2492 3056 2.285602 CGACAACATATGCTACAACCGC 60.286 50.000 1.58 0.00 0.00 5.68
2493 3057 2.927477 ACGACAACATATGCTACAACCG 59.073 45.455 1.58 0.73 0.00 4.44
2494 3058 4.939509 AACGACAACATATGCTACAACC 57.060 40.909 1.58 0.00 0.00 3.77
2495 3059 6.642683 AGTAACGACAACATATGCTACAAC 57.357 37.500 1.58 0.00 0.00 3.32
2496 3060 6.401688 GCAAGTAACGACAACATATGCTACAA 60.402 38.462 1.58 0.00 0.00 2.41
2497 3061 5.062934 GCAAGTAACGACAACATATGCTACA 59.937 40.000 1.58 0.00 0.00 2.74
2498 3062 5.062934 TGCAAGTAACGACAACATATGCTAC 59.937 40.000 1.58 0.00 32.74 3.58
2499 3063 5.172205 TGCAAGTAACGACAACATATGCTA 58.828 37.500 1.58 0.00 32.74 3.49
2500 3064 4.000325 TGCAAGTAACGACAACATATGCT 59.000 39.130 1.58 0.00 32.74 3.79
2501 3065 4.334443 CTGCAAGTAACGACAACATATGC 58.666 43.478 1.58 0.00 0.00 3.14
2520 3084 4.679197 TGAAAAATGTTGCAACGATACTGC 59.321 37.500 23.79 11.19 40.35 4.40
2521 3085 5.116983 GGTGAAAAATGTTGCAACGATACTG 59.883 40.000 23.79 0.00 0.00 2.74
2522 3086 5.219633 GGTGAAAAATGTTGCAACGATACT 58.780 37.500 23.79 8.88 0.00 2.12
2523 3087 4.979197 TGGTGAAAAATGTTGCAACGATAC 59.021 37.500 23.79 14.48 31.73 2.24
2524 3088 4.979197 GTGGTGAAAAATGTTGCAACGATA 59.021 37.500 23.79 7.83 31.73 2.92
2525 3089 3.801594 GTGGTGAAAAATGTTGCAACGAT 59.198 39.130 23.79 15.27 31.73 3.73
2526 3090 3.182967 GTGGTGAAAAATGTTGCAACGA 58.817 40.909 23.79 13.71 31.73 3.85
2527 3091 2.283884 GGTGGTGAAAAATGTTGCAACG 59.716 45.455 23.79 0.00 31.73 4.10
2528 3092 2.283884 CGGTGGTGAAAAATGTTGCAAC 59.716 45.455 22.83 22.83 29.41 4.17
2529 3093 2.093973 ACGGTGGTGAAAAATGTTGCAA 60.094 40.909 0.00 0.00 0.00 4.08
2530 3094 1.478510 ACGGTGGTGAAAAATGTTGCA 59.521 42.857 0.00 0.00 0.00 4.08
2531 3095 2.217429 ACGGTGGTGAAAAATGTTGC 57.783 45.000 0.00 0.00 0.00 4.17
2532 3096 3.929610 ACAAACGGTGGTGAAAAATGTTG 59.070 39.130 0.00 0.00 0.00 3.33
2533 3097 4.195225 ACAAACGGTGGTGAAAAATGTT 57.805 36.364 0.00 0.00 0.00 2.71
2534 3098 3.878160 ACAAACGGTGGTGAAAAATGT 57.122 38.095 0.00 0.00 0.00 2.71
2535 3099 3.733727 GCTACAAACGGTGGTGAAAAATG 59.266 43.478 0.00 0.00 0.00 2.32
2536 3100 3.381908 TGCTACAAACGGTGGTGAAAAAT 59.618 39.130 0.00 0.00 0.00 1.82
2537 3101 2.753452 TGCTACAAACGGTGGTGAAAAA 59.247 40.909 0.00 0.00 0.00 1.94
2538 3102 2.366533 TGCTACAAACGGTGGTGAAAA 58.633 42.857 0.00 0.00 0.00 2.29
2539 3103 2.039818 TGCTACAAACGGTGGTGAAA 57.960 45.000 0.00 0.00 0.00 2.69
2540 3104 2.264005 ATGCTACAAACGGTGGTGAA 57.736 45.000 0.00 0.00 0.00 3.18
2541 3105 2.147958 GAATGCTACAAACGGTGGTGA 58.852 47.619 0.00 0.00 0.00 4.02
2542 3106 1.876799 TGAATGCTACAAACGGTGGTG 59.123 47.619 0.00 0.00 0.00 4.17
2543 3107 2.151202 CTGAATGCTACAAACGGTGGT 58.849 47.619 0.00 0.00 0.00 4.16
2544 3108 1.135689 GCTGAATGCTACAAACGGTGG 60.136 52.381 0.00 0.00 38.95 4.61
2545 3109 1.135689 GGCTGAATGCTACAAACGGTG 60.136 52.381 0.00 0.00 42.39 4.94
2546 3110 1.165270 GGCTGAATGCTACAAACGGT 58.835 50.000 0.00 0.00 42.39 4.83
2547 3111 1.164411 TGGCTGAATGCTACAAACGG 58.836 50.000 0.00 0.00 42.39 4.44
2548 3112 2.789208 CATGGCTGAATGCTACAAACG 58.211 47.619 0.00 0.00 42.39 3.60
2557 3121 1.472082 TGTAAACGGCATGGCTGAATG 59.528 47.619 18.09 3.54 38.46 2.67
2558 3122 1.745087 CTGTAAACGGCATGGCTGAAT 59.255 47.619 18.09 3.50 38.46 2.57
2559 3123 1.164411 CTGTAAACGGCATGGCTGAA 58.836 50.000 18.09 0.00 38.46 3.02
2560 3124 2.853159 CTGTAAACGGCATGGCTGA 58.147 52.632 18.09 0.00 38.46 4.26
2569 3133 3.181534 CGTAGTTGTGATGCTGTAAACGG 60.182 47.826 0.00 0.00 0.00 4.44
2570 3134 3.720920 GCGTAGTTGTGATGCTGTAAACG 60.721 47.826 0.00 0.00 0.00 3.60
2571 3135 3.432252 AGCGTAGTTGTGATGCTGTAAAC 59.568 43.478 0.00 0.00 37.77 2.01
2572 3136 3.659786 AGCGTAGTTGTGATGCTGTAAA 58.340 40.909 0.00 0.00 37.77 2.01
2573 3137 3.313012 AGCGTAGTTGTGATGCTGTAA 57.687 42.857 0.00 0.00 37.77 2.41
2574 3138 4.443913 TTAGCGTAGTTGTGATGCTGTA 57.556 40.909 0.00 0.00 39.50 2.74
2575 3139 3.313012 TTAGCGTAGTTGTGATGCTGT 57.687 42.857 0.00 0.00 39.50 4.40
2576 3140 3.618594 ACATTAGCGTAGTTGTGATGCTG 59.381 43.478 0.00 0.00 39.50 4.41
2577 3141 3.861840 ACATTAGCGTAGTTGTGATGCT 58.138 40.909 0.00 0.00 41.93 3.79
2578 3142 3.616821 TGACATTAGCGTAGTTGTGATGC 59.383 43.478 0.00 0.00 0.00 3.91
2579 3143 4.864806 AGTGACATTAGCGTAGTTGTGATG 59.135 41.667 0.00 0.00 0.00 3.07
2580 3144 5.073311 AGTGACATTAGCGTAGTTGTGAT 57.927 39.130 0.00 0.00 0.00 3.06
2581 3145 4.514781 AGTGACATTAGCGTAGTTGTGA 57.485 40.909 0.00 0.00 0.00 3.58
2582 3146 4.684242 TCAAGTGACATTAGCGTAGTTGTG 59.316 41.667 0.00 0.00 0.00 3.33
2583 3147 4.684703 GTCAAGTGACATTAGCGTAGTTGT 59.315 41.667 6.57 0.00 44.18 3.32
2584 3148 5.191595 GTCAAGTGACATTAGCGTAGTTG 57.808 43.478 6.57 0.00 44.18 3.16
2591 3155 8.260644 ACGAAGTCTAAGTCAAGTGACATTAGC 61.261 40.741 13.66 12.24 42.62 3.09
2592 3156 7.085116 ACGAAGTCTAAGTCAAGTGACATTAG 58.915 38.462 13.66 15.40 42.62 1.73
2593 3157 6.978338 ACGAAGTCTAAGTCAAGTGACATTA 58.022 36.000 13.66 8.18 42.62 1.90
2594 3158 5.844004 ACGAAGTCTAAGTCAAGTGACATT 58.156 37.500 13.66 7.55 42.62 2.71
2595 3159 5.455056 ACGAAGTCTAAGTCAAGTGACAT 57.545 39.130 13.66 4.39 42.62 3.06
2596 3160 4.913335 ACGAAGTCTAAGTCAAGTGACA 57.087 40.909 13.66 0.00 42.62 3.58
2597 3161 6.916932 ACTTAACGAAGTCTAAGTCAAGTGAC 59.083 38.462 3.12 3.12 45.00 3.67
2598 3162 7.035840 ACTTAACGAAGTCTAAGTCAAGTGA 57.964 36.000 0.00 0.00 45.00 3.41
2624 3188 6.307170 GTCTGTCTAGAACTCAGTCGACTGA 61.307 48.000 38.24 38.24 41.59 3.41
2625 3189 3.997681 TCTGTCTAGAACTCAGTCGACTG 59.002 47.826 34.76 34.76 45.08 3.51
2626 3190 3.998341 GTCTGTCTAGAACTCAGTCGACT 59.002 47.826 13.58 13.58 34.01 4.18
2627 3191 3.125658 GGTCTGTCTAGAACTCAGTCGAC 59.874 52.174 7.70 7.70 37.67 4.20
2628 3192 3.336468 GGTCTGTCTAGAACTCAGTCGA 58.664 50.000 8.29 0.00 37.67 4.20
2629 3193 2.420722 GGGTCTGTCTAGAACTCAGTCG 59.579 54.545 8.29 0.00 40.61 4.18
2630 3194 3.692690 AGGGTCTGTCTAGAACTCAGTC 58.307 50.000 8.29 3.90 40.61 3.51
2631 3195 3.818295 AGGGTCTGTCTAGAACTCAGT 57.182 47.619 8.29 0.00 40.61 3.41
2632 3196 6.591750 TTAAAGGGTCTGTCTAGAACTCAG 57.408 41.667 0.00 0.00 40.61 3.35
2633 3197 6.989155 TTTAAAGGGTCTGTCTAGAACTCA 57.011 37.500 0.00 0.00 40.61 3.41
2634 3198 8.148999 TCTTTTTAAAGGGTCTGTCTAGAACTC 58.851 37.037 0.00 0.00 40.61 3.01
2635 3199 8.030913 TCTTTTTAAAGGGTCTGTCTAGAACT 57.969 34.615 0.00 0.00 40.61 3.01
2636 3200 8.850007 ATCTTTTTAAAGGGTCTGTCTAGAAC 57.150 34.615 0.00 0.00 40.04 3.01
2637 3201 8.881262 AGATCTTTTTAAAGGGTCTGTCTAGAA 58.119 33.333 1.71 0.00 36.67 2.10
2638 3202 8.437274 AGATCTTTTTAAAGGGTCTGTCTAGA 57.563 34.615 1.71 0.00 36.67 2.43
2639 3203 9.589111 GTAGATCTTTTTAAAGGGTCTGTCTAG 57.411 37.037 12.02 0.00 36.67 2.43
2640 3204 8.537858 GGTAGATCTTTTTAAAGGGTCTGTCTA 58.462 37.037 12.02 0.00 36.67 2.59
2641 3205 7.395617 GGTAGATCTTTTTAAAGGGTCTGTCT 58.604 38.462 12.02 0.77 36.67 3.41
2642 3206 6.313164 CGGTAGATCTTTTTAAAGGGTCTGTC 59.687 42.308 12.02 5.92 36.67 3.51
2643 3207 6.171213 CGGTAGATCTTTTTAAAGGGTCTGT 58.829 40.000 12.02 0.00 36.67 3.41
2644 3208 5.064834 GCGGTAGATCTTTTTAAAGGGTCTG 59.935 44.000 12.02 0.00 36.67 3.51
2645 3209 5.183969 GCGGTAGATCTTTTTAAAGGGTCT 58.816 41.667 7.69 7.69 36.67 3.85
2646 3210 4.033702 CGCGGTAGATCTTTTTAAAGGGTC 59.966 45.833 0.00 0.00 36.67 4.46
2647 3211 3.937079 CGCGGTAGATCTTTTTAAAGGGT 59.063 43.478 0.00 0.00 36.67 4.34
2648 3212 3.937079 ACGCGGTAGATCTTTTTAAAGGG 59.063 43.478 12.47 0.00 36.67 3.95
2649 3213 4.259690 CGACGCGGTAGATCTTTTTAAAGG 60.260 45.833 12.47 0.00 36.67 3.11
2650 3214 4.778154 GCGACGCGGTAGATCTTTTTAAAG 60.778 45.833 12.47 0.00 37.36 1.85
2651 3215 3.061161 GCGACGCGGTAGATCTTTTTAAA 59.939 43.478 12.47 0.00 0.00 1.52
2652 3216 2.599973 GCGACGCGGTAGATCTTTTTAA 59.400 45.455 12.47 0.00 0.00 1.52
2653 3217 2.187707 GCGACGCGGTAGATCTTTTTA 58.812 47.619 12.47 0.00 0.00 1.52
2654 3218 0.997196 GCGACGCGGTAGATCTTTTT 59.003 50.000 12.47 0.00 0.00 1.94
2655 3219 2.662150 GCGACGCGGTAGATCTTTT 58.338 52.632 12.47 0.00 0.00 2.27
2656 3220 4.396854 GCGACGCGGTAGATCTTT 57.603 55.556 12.47 0.00 0.00 2.52
2669 3233 1.443872 ACATCCAACGACTCGCGAC 60.444 57.895 3.71 0.00 44.57 5.19
2726 3290 5.799681 ATTTTTGCAACAAGACCTTTGTG 57.200 34.783 0.00 0.00 32.22 3.33
2748 3312 7.024340 TGCAACGTAACCTTTGTTGTAAATA 57.976 32.000 6.24 0.00 43.66 1.40
2814 3378 5.368145 TCTACAACAAGAACTCTGTTGCAT 58.632 37.500 13.99 1.02 44.62 3.96
2879 3447 1.706443 GCTTTTGCAACATCAGCTCC 58.294 50.000 0.00 0.00 46.58 4.70
2920 3488 1.029408 TTGCAAACCATAGCGGCGAT 61.029 50.000 12.98 7.15 39.03 4.58
2975 3543 3.947834 CTGTTATTTCCCTTGGCTACCAG 59.052 47.826 0.00 0.00 33.81 4.00
2982 3550 5.772521 CAAACAGTCTGTTATTTCCCTTGG 58.227 41.667 18.45 0.00 40.14 3.61
3003 3572 1.285668 TTTATCACGCACGCTCGCAA 61.286 50.000 0.00 0.00 0.00 4.85
3019 3588 2.017138 TCGCGTTGATCCATGCTTTA 57.983 45.000 5.77 0.00 0.00 1.85
3022 3591 2.609825 GATCGCGTTGATCCATGCT 58.390 52.632 5.77 0.00 46.55 3.79
3034 3603 1.154413 GCACAACTGTTGGATCGCG 60.154 57.895 23.15 0.00 34.12 5.87
3071 3640 4.519437 CTCTGCCGGCTGATCGCA 62.519 66.667 32.72 13.35 41.67 5.10
3234 3849 9.294030 CTTTTGATGCCTAACAGATAACAAATC 57.706 33.333 0.00 0.00 0.00 2.17
3311 3929 5.446143 TTCTTATCACCGCAACAATTGTT 57.554 34.783 18.13 18.13 39.12 2.83
3442 4099 3.551846 GTTGGAAACCAGAAGAGAACCA 58.448 45.455 0.00 0.00 42.21 3.67
3640 5816 6.428159 CCTCCTCTATGGTTGGAATAAAATCG 59.572 42.308 0.00 0.00 37.07 3.34
3737 5913 8.797438 GCTAGCTATTTAATTTAGAAGGCCATT 58.203 33.333 7.70 0.00 0.00 3.16
3832 6008 4.935352 TGGTGGAAGAAATGACCTTTTG 57.065 40.909 0.00 0.00 0.00 2.44
3836 6012 6.493166 TGATATTTGGTGGAAGAAATGACCT 58.507 36.000 0.00 0.00 0.00 3.85
3852 6028 8.440059 GCCAACATCATATGCATTTGATATTTG 58.560 33.333 25.91 26.32 31.50 2.32
4017 6193 1.324736 GTCTTTCCTAGAACGCATGCG 59.675 52.381 36.79 36.79 46.03 4.73
4058 6237 5.276461 ACTGATGCATCGTCCAATTAGTA 57.724 39.130 21.34 0.00 0.00 1.82
4101 6280 1.247567 AGTTCCCCGTGCTTTTCATG 58.752 50.000 0.00 0.00 0.00 3.07
4140 6319 4.756502 TGCTCATCTTTCTCTGACTGATG 58.243 43.478 0.00 0.00 36.73 3.07
4205 6391 2.480845 GTTGTAGGATCGATTTCCCCG 58.519 52.381 0.00 0.00 36.35 5.73
4270 6456 2.237143 TGATTCTGCTCGGTTCTGGATT 59.763 45.455 0.00 0.00 0.00 3.01
4306 6492 6.469782 AAGTTGATGACAGTTTCATTGGTT 57.530 33.333 0.00 0.00 45.67 3.67
4619 6888 5.299028 TGCACTCTTAACATGCAGAGAAAAA 59.701 36.000 19.20 4.37 44.17 1.94
4681 6950 9.618890 AGTTGCTAAGCATTGATCTTTATAAGA 57.381 29.630 0.00 0.00 38.76 2.10
4712 6981 8.090831 TGAAGGCTTGATAATATGCAGTACTAG 58.909 37.037 3.46 0.00 0.00 2.57
4899 7178 0.398696 AGTTTACATGGTCACCCGCA 59.601 50.000 0.00 0.00 0.00 5.69
4964 7243 0.250684 TCTTCCTGCCACAATCGCAA 60.251 50.000 0.00 0.00 35.40 4.85
5066 7346 2.604686 AGCGTCCAGGCCAAGAGA 60.605 61.111 5.01 0.00 0.00 3.10
5190 7470 4.360643 GGCATTCATCCAGGCCAA 57.639 55.556 5.01 0.00 45.70 4.52
5218 7498 4.424711 GCGGCATCCAGGGTTCCA 62.425 66.667 0.00 0.00 0.00 3.53
5230 7510 3.085296 GGGTTAGGGTAGGCGGCA 61.085 66.667 13.08 0.00 0.00 5.69
5343 7629 2.718731 CACCGGAAAACGCAGCAA 59.281 55.556 9.46 0.00 42.52 3.91
5417 7710 2.203084 TGCGACCCGAACTGCAAA 60.203 55.556 0.00 0.00 33.80 3.68
5987 8338 5.418524 TCACAATTGGATCATCAAACCGAAT 59.581 36.000 10.83 0.00 0.00 3.34
6058 8418 1.291132 GAGTGCTCTAAACGCCCATC 58.709 55.000 0.00 0.00 0.00 3.51
6074 8434 1.140252 ACCACAAGTAGCAAACCGAGT 59.860 47.619 0.00 0.00 0.00 4.18
6085 8445 7.694545 TGGGTGGATTAATTACAACCACAAGTA 60.695 37.037 20.67 4.05 46.38 2.24
6103 8463 2.094675 CGAAAAATGCTCTGGGTGGAT 58.905 47.619 0.00 0.00 0.00 3.41
6106 8466 4.260784 GCTATACGAAAAATGCTCTGGGTG 60.261 45.833 0.00 0.00 0.00 4.61
6123 8483 7.376072 GCGTTCAAGGATATTTTTGTGCTATAC 59.624 37.037 0.00 0.00 0.00 1.47
6195 8555 0.813821 GTAGGTACGTGTGTCCCCTC 59.186 60.000 0.00 0.00 33.14 4.30
6211 8571 4.563786 GGAAAGGAGTGGGAACTTGAGTAG 60.564 50.000 0.00 0.00 0.00 2.57
6212 8572 3.326880 GGAAAGGAGTGGGAACTTGAGTA 59.673 47.826 0.00 0.00 0.00 2.59
6249 8610 1.899814 TGCATGTAAGGGTTCTCGACT 59.100 47.619 0.00 0.00 0.00 4.18
6266 8627 7.387265 TTCCCCTATCTATTTGTTATCTGCA 57.613 36.000 0.00 0.00 0.00 4.41
6330 8691 5.854157 TCGAATTTGAATCGAGTAAACTGC 58.146 37.500 0.00 0.00 43.76 4.40
6349 8710 2.234414 AGGCCGTTAGTTATGGTTCGAA 59.766 45.455 0.00 0.00 35.16 3.71
6390 8751 0.517316 GCATTAATTCCTAGGCCGCG 59.483 55.000 2.96 0.00 0.00 6.46
6392 8753 3.003480 GCTAGCATTAATTCCTAGGCCG 58.997 50.000 10.63 0.00 31.46 6.13
6430 8793 2.016318 TGTGAGGCCATTTAGAATGCG 58.984 47.619 5.01 0.00 0.00 4.73
6479 8842 8.571461 AATCAGATTTAAGATGCACTTTCAGA 57.429 30.769 6.82 3.17 39.72 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.