Multiple sequence alignment - TraesCS2B01G355100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G355100 chr2B 100.000 2489 0 0 1 2489 506338451 506335963 0.000000e+00 4597
1 TraesCS2B01G355100 chr2B 77.926 299 31 16 2215 2484 661435236 661434944 1.190000e-33 154
2 TraesCS2B01G355100 chr1A 96.925 748 20 1 1 745 19546362 19547109 0.000000e+00 1251
3 TraesCS2B01G355100 chr1A 82.353 289 32 14 2212 2486 62389427 62389710 1.490000e-57 233
4 TraesCS2B01G355100 chr2D 93.703 794 38 10 751 1533 429374939 429374147 0.000000e+00 1179
5 TraesCS2B01G355100 chr2D 81.950 482 71 11 1014 1481 429199824 429199345 6.450000e-106 394
6 TraesCS2B01G355100 chr2D 81.818 473 54 17 1702 2145 429374042 429373573 3.910000e-98 368
7 TraesCS2B01G355100 chr2A 88.740 968 52 19 750 1685 558480666 558481608 0.000000e+00 1131
8 TraesCS2B01G355100 chr2A 85.205 730 59 22 38 745 407350070 407349368 0.000000e+00 704
9 TraesCS2B01G355100 chr2A 88.649 185 17 4 1702 1883 558481591 558481774 3.220000e-54 222
10 TraesCS2B01G355100 chr7B 94.372 462 17 1 1 462 702451243 702451695 0.000000e+00 701
11 TraesCS2B01G355100 chr7B 81.592 603 53 31 38 601 496278330 496277747 1.760000e-121 446
12 TraesCS2B01G355100 chr7B 94.052 269 12 3 480 745 702451668 702451935 2.980000e-109 405
13 TraesCS2B01G355100 chr7B 83.111 450 52 16 38 479 593506886 593506453 3.000000e-104 388
14 TraesCS2B01G355100 chr3B 94.706 340 9 4 145 482 749670061 749670393 1.020000e-143 520
15 TraesCS2B01G355100 chr3B 94.565 276 14 1 1 275 749669500 749669775 2.290000e-115 425
16 TraesCS2B01G355100 chr3B 86.008 243 12 3 504 745 749670385 749670606 8.900000e-60 241
17 TraesCS2B01G355100 chr6B 79.520 542 80 20 959 1481 29596062 29595533 8.470000e-95 357


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G355100 chr2B 506335963 506338451 2488 True 4597.000000 4597 100.000000 1 2489 1 chr2B.!!$R1 2488
1 TraesCS2B01G355100 chr1A 19546362 19547109 747 False 1251.000000 1251 96.925000 1 745 1 chr1A.!!$F1 744
2 TraesCS2B01G355100 chr2D 429373573 429374939 1366 True 773.500000 1179 87.760500 751 2145 2 chr2D.!!$R2 1394
3 TraesCS2B01G355100 chr2A 407349368 407350070 702 True 704.000000 704 85.205000 38 745 1 chr2A.!!$R1 707
4 TraesCS2B01G355100 chr2A 558480666 558481774 1108 False 676.500000 1131 88.694500 750 1883 2 chr2A.!!$F1 1133
5 TraesCS2B01G355100 chr7B 702451243 702451935 692 False 553.000000 701 94.212000 1 745 2 chr7B.!!$F1 744
6 TraesCS2B01G355100 chr7B 496277747 496278330 583 True 446.000000 446 81.592000 38 601 1 chr7B.!!$R1 563
7 TraesCS2B01G355100 chr3B 749669500 749670606 1106 False 395.333333 520 91.759667 1 745 3 chr3B.!!$F1 744
8 TraesCS2B01G355100 chr6B 29595533 29596062 529 True 357.000000 357 79.520000 959 1481 1 chr6B.!!$R1 522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
499 1010 1.000955 GAGAGAGGAACGGCTGTTTCA 59.999 52.381 19.07 0.0 38.78 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1498 2067 0.039618 AATGGGTCTTCGGTGGCATT 59.96 50.0 0.0 0.0 0.0 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 37 5.066893 ACCAGAGGTAAAAAGGACGAAAAAC 59.933 40.000 0.00 0.00 32.11 2.43
36 38 8.107283 ACCAGAGGTAAAAAGGACGAAAAACG 62.107 42.308 0.00 0.00 40.44 3.60
101 103 5.502079 TCAGAGAGAAGAGGTAAATCGAGT 58.498 41.667 0.00 0.00 0.00 4.18
215 640 1.091537 TCGATTGGGGAACGAAATGC 58.908 50.000 0.00 0.00 33.20 3.56
356 789 4.853142 TGCCGCCCCGACCTAGAT 62.853 66.667 0.00 0.00 0.00 1.98
460 971 1.004595 GGAACGGATACTGCGAAACC 58.995 55.000 0.00 0.00 34.49 3.27
472 983 3.087176 GAAACCGCCGGATTCGTC 58.913 61.111 11.71 0.00 33.95 4.20
473 984 2.795389 GAAACCGCCGGATTCGTCG 61.795 63.158 11.71 0.00 37.51 5.12
480 991 3.884350 CGGATTCGTCGCCGGAGA 61.884 66.667 5.05 3.81 43.67 3.71
481 992 2.026301 GGATTCGTCGCCGGAGAG 59.974 66.667 8.65 3.09 33.95 3.20
482 993 2.478890 GGATTCGTCGCCGGAGAGA 61.479 63.158 8.65 5.68 33.95 3.10
483 994 1.009449 GATTCGTCGCCGGAGAGAG 60.009 63.158 8.65 6.17 33.95 3.20
484 995 1.437772 GATTCGTCGCCGGAGAGAGA 61.438 60.000 8.65 8.75 33.95 3.10
485 996 1.440938 ATTCGTCGCCGGAGAGAGAG 61.441 60.000 8.65 0.61 33.95 3.20
486 997 3.578272 CGTCGCCGGAGAGAGAGG 61.578 72.222 8.65 0.00 0.00 3.69
487 998 2.124653 GTCGCCGGAGAGAGAGGA 60.125 66.667 8.65 0.00 0.00 3.71
488 999 1.749638 GTCGCCGGAGAGAGAGGAA 60.750 63.158 8.65 0.00 0.00 3.36
489 1000 1.749638 TCGCCGGAGAGAGAGGAAC 60.750 63.158 5.05 0.00 0.00 3.62
490 1001 2.802106 GCCGGAGAGAGAGGAACG 59.198 66.667 5.05 0.00 0.00 3.95
491 1002 2.776913 GCCGGAGAGAGAGGAACGG 61.777 68.421 5.05 0.00 43.81 4.44
499 1010 1.000955 GAGAGAGGAACGGCTGTTTCA 59.999 52.381 19.07 0.00 38.78 2.69
565 1084 3.766691 GGGAACGGTAGCCTGCGA 61.767 66.667 0.00 0.00 0.00 5.10
745 1267 3.068165 GCTGCACTTTTTAGAGTTTGGGT 59.932 43.478 0.00 0.00 0.00 4.51
746 1268 4.441495 GCTGCACTTTTTAGAGTTTGGGTT 60.441 41.667 0.00 0.00 0.00 4.11
747 1269 5.660460 CTGCACTTTTTAGAGTTTGGGTTT 58.340 37.500 0.00 0.00 0.00 3.27
748 1270 6.681865 GCTGCACTTTTTAGAGTTTGGGTTTA 60.682 38.462 0.00 0.00 0.00 2.01
810 1332 4.897140 TCTCGAGCTACCTAAGATACTCC 58.103 47.826 7.81 0.00 0.00 3.85
823 1346 2.950309 AGATACTCCGACGTAGCACATT 59.050 45.455 0.00 0.00 0.00 2.71
983 1516 3.470567 GCGGAGACAACTCGCGTG 61.471 66.667 5.77 6.24 43.44 5.34
1509 2078 0.948623 CAGTGACGAATGCCACCGAA 60.949 55.000 0.00 0.00 34.00 4.30
1520 2096 1.595093 GCCACCGAAGACCCATTTGG 61.595 60.000 0.00 0.00 39.35 3.28
1533 2109 2.190538 CCATTTGGCAGGGATTTCCTT 58.809 47.619 0.00 0.00 45.47 3.36
1534 2110 2.573009 CCATTTGGCAGGGATTTCCTTT 59.427 45.455 0.00 0.00 45.47 3.11
1535 2111 3.009363 CCATTTGGCAGGGATTTCCTTTT 59.991 43.478 0.00 0.00 45.47 2.27
1536 2112 4.507157 CCATTTGGCAGGGATTTCCTTTTT 60.507 41.667 0.00 0.00 45.47 1.94
1571 2147 7.040473 TCAGCAGTAATTTCCTACTAGCTAC 57.960 40.000 0.00 0.00 35.93 3.58
1585 2161 1.745489 GCTACCCGGGCTTCTGTTG 60.745 63.158 24.08 1.34 0.00 3.33
1615 2191 0.038526 GTCGTCTCTTTCGGCCTTGA 60.039 55.000 0.00 0.00 0.00 3.02
1628 2208 1.593265 CCTTGAATTGGGCCAGTGC 59.407 57.895 6.23 2.25 0.00 4.40
1639 2219 1.425428 GCCAGTGCGCTCATACAAC 59.575 57.895 9.73 0.00 0.00 3.32
1654 2234 5.483811 TCATACAACGTCAGCCTGAATTAA 58.516 37.500 0.00 0.00 0.00 1.40
1660 2240 2.874701 CGTCAGCCTGAATTAATCCTGG 59.125 50.000 0.00 0.00 0.00 4.45
1678 2258 1.493022 TGGTTGTACAAGTTGAGGCCT 59.507 47.619 3.86 3.86 0.00 5.19
1679 2259 1.880027 GGTTGTACAAGTTGAGGCCTG 59.120 52.381 12.00 0.00 0.00 4.85
1680 2260 2.572290 GTTGTACAAGTTGAGGCCTGT 58.428 47.619 12.00 3.59 0.00 4.00
1681 2261 2.949644 GTTGTACAAGTTGAGGCCTGTT 59.050 45.455 12.00 0.00 0.00 3.16
1682 2262 4.131596 GTTGTACAAGTTGAGGCCTGTTA 58.868 43.478 12.00 0.00 0.00 2.41
1683 2263 3.735591 TGTACAAGTTGAGGCCTGTTAC 58.264 45.455 12.00 5.00 0.00 2.50
1684 2264 2.271944 ACAAGTTGAGGCCTGTTACC 57.728 50.000 12.00 0.00 0.00 2.85
1685 2265 1.493022 ACAAGTTGAGGCCTGTTACCA 59.507 47.619 12.00 0.00 0.00 3.25
1686 2266 2.092103 ACAAGTTGAGGCCTGTTACCAA 60.092 45.455 12.00 4.47 0.00 3.67
1687 2267 3.157087 CAAGTTGAGGCCTGTTACCAAT 58.843 45.455 12.00 0.00 0.00 3.16
1688 2268 2.795329 AGTTGAGGCCTGTTACCAATG 58.205 47.619 12.00 0.00 0.00 2.82
1689 2269 2.108250 AGTTGAGGCCTGTTACCAATGT 59.892 45.455 12.00 0.00 0.00 2.71
1690 2270 2.488153 GTTGAGGCCTGTTACCAATGTC 59.512 50.000 12.00 0.00 0.00 3.06
1691 2271 1.985159 TGAGGCCTGTTACCAATGTCT 59.015 47.619 12.00 0.00 0.00 3.41
1692 2272 2.027192 TGAGGCCTGTTACCAATGTCTC 60.027 50.000 12.00 0.00 0.00 3.36
1693 2273 1.985159 AGGCCTGTTACCAATGTCTCA 59.015 47.619 3.11 0.00 0.00 3.27
1694 2274 2.375174 AGGCCTGTTACCAATGTCTCAA 59.625 45.455 3.11 0.00 0.00 3.02
1695 2275 3.153919 GGCCTGTTACCAATGTCTCAAA 58.846 45.455 0.00 0.00 0.00 2.69
1696 2276 3.572255 GGCCTGTTACCAATGTCTCAAAA 59.428 43.478 0.00 0.00 0.00 2.44
1697 2277 4.038642 GGCCTGTTACCAATGTCTCAAAAA 59.961 41.667 0.00 0.00 0.00 1.94
1752 2335 3.007940 CCTGCTCGTATGGGAAATGGATA 59.992 47.826 0.00 0.00 0.00 2.59
1753 2336 4.248859 CTGCTCGTATGGGAAATGGATAG 58.751 47.826 0.00 0.00 0.00 2.08
1765 2350 7.132128 TGGGAAATGGATAGCTAAGGAAAAAT 58.868 34.615 0.00 0.00 0.00 1.82
1816 2401 4.796038 ATTTCATGTGAGGGCTTCTTTG 57.204 40.909 0.00 0.00 0.00 2.77
1819 2404 1.068055 CATGTGAGGGCTTCTTTGCAC 60.068 52.381 0.00 0.00 36.44 4.57
1898 2501 1.115467 ATTTCCAAAACCACACCGCA 58.885 45.000 0.00 0.00 0.00 5.69
1966 2569 1.382522 AGCACTGGCCATCGTAATTG 58.617 50.000 5.51 0.00 42.56 2.32
1989 2593 2.709475 GCTAAAGCACCGATGGCG 59.291 61.111 0.00 0.00 41.59 5.69
1999 2603 2.124903 CACCGATGGCGTAGTAATCAC 58.875 52.381 0.00 0.00 35.23 3.06
2008 2612 3.532213 CGTAGTAATCACGCTTTCACG 57.468 47.619 0.00 0.00 39.50 4.35
2011 2615 2.334838 AGTAATCACGCTTTCACGTCC 58.665 47.619 0.00 0.00 46.34 4.79
2016 2620 2.342279 CGCTTTCACGTCCCTCCA 59.658 61.111 0.00 0.00 0.00 3.86
2017 2621 1.301401 CGCTTTCACGTCCCTCCAA 60.301 57.895 0.00 0.00 0.00 3.53
2021 2625 0.768622 TTTCACGTCCCTCCAACCAT 59.231 50.000 0.00 0.00 0.00 3.55
2032 2636 2.969827 CAACCATTGGGCCCGTTC 59.030 61.111 19.37 0.00 37.90 3.95
2033 2637 2.675075 AACCATTGGGCCCGTTCG 60.675 61.111 19.37 7.29 37.90 3.95
2035 2639 2.675075 CCATTGGGCCCGTTCGTT 60.675 61.111 19.37 0.00 0.00 3.85
2036 2640 1.377463 CCATTGGGCCCGTTCGTTA 60.377 57.895 19.37 0.00 0.00 3.18
2038 2642 1.078001 ATTGGGCCCGTTCGTTAGG 60.078 57.895 19.37 0.00 0.00 2.69
2039 2643 3.905437 TTGGGCCCGTTCGTTAGGC 62.905 63.158 19.37 0.00 46.37 3.93
2043 2651 2.660802 CCCGTTCGTTAGGCTGGT 59.339 61.111 0.00 0.00 0.00 4.00
2046 2654 1.338011 CCCGTTCGTTAGGCTGGTAAA 60.338 52.381 0.00 0.00 0.00 2.01
2061 2669 4.658071 CTGGTAAAATAATGCCACACGTC 58.342 43.478 0.00 0.00 0.00 4.34
2063 2671 4.083217 TGGTAAAATAATGCCACACGTCAC 60.083 41.667 0.00 0.00 0.00 3.67
2065 2673 4.782019 AAAATAATGCCACACGTCACAT 57.218 36.364 0.00 0.00 0.00 3.21
2066 2674 4.782019 AAATAATGCCACACGTCACATT 57.218 36.364 6.96 6.96 36.70 2.71
2067 2675 4.782019 AATAATGCCACACGTCACATTT 57.218 36.364 7.05 0.00 34.69 2.32
2068 2676 4.782019 ATAATGCCACACGTCACATTTT 57.218 36.364 7.05 0.00 34.69 1.82
2069 2677 2.420628 ATGCCACACGTCACATTTTG 57.579 45.000 0.00 0.00 0.00 2.44
2082 2690 3.084786 CACATTTTGACTCCTCTTCCCC 58.915 50.000 0.00 0.00 0.00 4.81
2083 2691 2.716424 ACATTTTGACTCCTCTTCCCCA 59.284 45.455 0.00 0.00 0.00 4.96
2084 2692 3.140144 ACATTTTGACTCCTCTTCCCCAA 59.860 43.478 0.00 0.00 0.00 4.12
2089 2697 1.765904 GACTCCTCTTCCCCAATCTCC 59.234 57.143 0.00 0.00 0.00 3.71
2138 2746 0.477204 CATGCCATCACCTCCTCCAT 59.523 55.000 0.00 0.00 0.00 3.41
2145 2753 1.379044 CACCTCCTCCATGCCCAAC 60.379 63.158 0.00 0.00 0.00 3.77
2146 2754 1.542375 ACCTCCTCCATGCCCAACT 60.542 57.895 0.00 0.00 0.00 3.16
2147 2755 1.225704 CCTCCTCCATGCCCAACTC 59.774 63.158 0.00 0.00 0.00 3.01
2148 2756 1.277580 CCTCCTCCATGCCCAACTCT 61.278 60.000 0.00 0.00 0.00 3.24
2149 2757 1.500474 CTCCTCCATGCCCAACTCTA 58.500 55.000 0.00 0.00 0.00 2.43
2150 2758 2.053244 CTCCTCCATGCCCAACTCTAT 58.947 52.381 0.00 0.00 0.00 1.98
2151 2759 3.242867 CTCCTCCATGCCCAACTCTATA 58.757 50.000 0.00 0.00 0.00 1.31
2152 2760 3.242867 TCCTCCATGCCCAACTCTATAG 58.757 50.000 0.00 0.00 0.00 1.31
2153 2761 2.975489 CCTCCATGCCCAACTCTATAGT 59.025 50.000 0.00 0.00 37.65 2.12
2154 2762 3.244353 CCTCCATGCCCAACTCTATAGTG 60.244 52.174 0.00 0.00 35.62 2.74
2155 2763 2.104792 TCCATGCCCAACTCTATAGTGC 59.895 50.000 0.00 0.00 35.62 4.40
2156 2764 2.498167 CATGCCCAACTCTATAGTGCC 58.502 52.381 0.00 0.00 35.62 5.01
2157 2765 1.879575 TGCCCAACTCTATAGTGCCT 58.120 50.000 0.00 0.00 35.62 4.75
2158 2766 1.762957 TGCCCAACTCTATAGTGCCTC 59.237 52.381 0.00 0.00 35.62 4.70
2159 2767 1.269831 GCCCAACTCTATAGTGCCTCG 60.270 57.143 0.00 0.00 35.62 4.63
2160 2768 2.032620 CCCAACTCTATAGTGCCTCGT 58.967 52.381 0.00 0.00 35.62 4.18
2161 2769 2.223829 CCCAACTCTATAGTGCCTCGTG 60.224 54.545 0.00 0.00 35.62 4.35
2162 2770 2.464865 CAACTCTATAGTGCCTCGTGC 58.535 52.381 0.00 0.00 35.62 5.34
2163 2771 1.033574 ACTCTATAGTGCCTCGTGCC 58.966 55.000 0.00 0.00 40.16 5.01
2164 2772 1.032794 CTCTATAGTGCCTCGTGCCA 58.967 55.000 0.00 0.00 40.16 4.92
2165 2773 1.615883 CTCTATAGTGCCTCGTGCCAT 59.384 52.381 0.00 0.00 40.16 4.40
2166 2774 1.613925 TCTATAGTGCCTCGTGCCATC 59.386 52.381 0.00 0.00 40.16 3.51
2167 2775 1.341209 CTATAGTGCCTCGTGCCATCA 59.659 52.381 0.00 0.00 40.16 3.07
2168 2776 0.105593 ATAGTGCCTCGTGCCATCAG 59.894 55.000 0.00 0.00 40.16 2.90
2169 2777 2.578163 TAGTGCCTCGTGCCATCAGC 62.578 60.000 0.00 0.00 40.16 4.26
2178 2786 3.204827 GCCATCAGCGGCGAACAT 61.205 61.111 12.98 0.00 43.52 2.71
2179 2787 1.887242 GCCATCAGCGGCGAACATA 60.887 57.895 12.98 0.00 43.52 2.29
2180 2788 1.934463 CCATCAGCGGCGAACATAC 59.066 57.895 12.98 0.00 0.00 2.39
2181 2789 0.809636 CCATCAGCGGCGAACATACA 60.810 55.000 12.98 0.00 0.00 2.29
2182 2790 0.301687 CATCAGCGGCGAACATACAC 59.698 55.000 12.98 0.00 0.00 2.90
2183 2791 0.810031 ATCAGCGGCGAACATACACC 60.810 55.000 12.98 0.00 0.00 4.16
2184 2792 1.739929 CAGCGGCGAACATACACCA 60.740 57.895 12.98 0.00 0.00 4.17
2185 2793 1.089481 CAGCGGCGAACATACACCAT 61.089 55.000 12.98 0.00 0.00 3.55
2186 2794 1.089481 AGCGGCGAACATACACCATG 61.089 55.000 12.98 0.00 40.78 3.66
2187 2795 1.351707 CGGCGAACATACACCATGC 59.648 57.895 0.00 0.00 38.29 4.06
2188 2796 1.351707 GGCGAACATACACCATGCG 59.648 57.895 0.00 0.00 38.29 4.73
2189 2797 1.366111 GGCGAACATACACCATGCGT 61.366 55.000 0.00 0.00 38.29 5.24
2191 2799 1.355005 CGAACATACACCATGCGTGA 58.645 50.000 17.76 5.54 46.20 4.35
2192 2800 1.933181 CGAACATACACCATGCGTGAT 59.067 47.619 17.76 0.00 46.20 3.06
2193 2801 2.285776 CGAACATACACCATGCGTGATG 60.286 50.000 17.76 2.12 46.20 3.07
2194 2802 2.689553 ACATACACCATGCGTGATGA 57.310 45.000 7.45 0.00 46.20 2.92
2195 2803 3.198409 ACATACACCATGCGTGATGAT 57.802 42.857 7.45 0.00 46.20 2.45
2196 2804 2.874086 ACATACACCATGCGTGATGATG 59.126 45.455 7.45 8.95 46.20 3.07
2197 2805 2.977772 TACACCATGCGTGATGATGA 57.022 45.000 7.45 0.00 46.20 2.92
2198 2806 1.660167 ACACCATGCGTGATGATGAG 58.340 50.000 7.45 0.00 46.20 2.90
2199 2807 1.065926 ACACCATGCGTGATGATGAGT 60.066 47.619 7.45 0.00 46.20 3.41
2200 2808 1.329599 CACCATGCGTGATGATGAGTG 59.670 52.381 7.72 1.03 46.20 3.51
2201 2809 1.065926 ACCATGCGTGATGATGAGTGT 60.066 47.619 7.72 0.00 33.31 3.55
2202 2810 2.168313 ACCATGCGTGATGATGAGTGTA 59.832 45.455 7.72 0.00 33.31 2.90
2203 2811 3.181462 ACCATGCGTGATGATGAGTGTAT 60.181 43.478 7.72 0.00 33.31 2.29
2204 2812 3.811497 CCATGCGTGATGATGAGTGTATT 59.189 43.478 7.72 0.00 33.31 1.89
2205 2813 4.274214 CCATGCGTGATGATGAGTGTATTT 59.726 41.667 7.72 0.00 33.31 1.40
2206 2814 5.220912 CCATGCGTGATGATGAGTGTATTTT 60.221 40.000 7.72 0.00 33.31 1.82
2207 2815 5.878332 TGCGTGATGATGAGTGTATTTTT 57.122 34.783 0.00 0.00 0.00 1.94
2208 2816 6.976636 TGCGTGATGATGAGTGTATTTTTA 57.023 33.333 0.00 0.00 0.00 1.52
2209 2817 6.771076 TGCGTGATGATGAGTGTATTTTTAC 58.229 36.000 0.00 0.00 0.00 2.01
2210 2818 6.370166 TGCGTGATGATGAGTGTATTTTTACA 59.630 34.615 0.00 0.00 0.00 2.41
2228 2836 8.718102 TTTTTACACTCACTAGGATAATGCTC 57.282 34.615 0.00 0.00 0.00 4.26
2229 2837 4.576216 ACACTCACTAGGATAATGCTCG 57.424 45.455 0.00 0.00 0.00 5.03
2230 2838 3.954904 ACACTCACTAGGATAATGCTCGT 59.045 43.478 0.00 0.00 0.00 4.18
2231 2839 4.202060 ACACTCACTAGGATAATGCTCGTG 60.202 45.833 0.00 0.00 33.81 4.35
2232 2840 3.954904 ACTCACTAGGATAATGCTCGTGT 59.045 43.478 0.00 0.00 34.11 4.49
2233 2841 4.202060 ACTCACTAGGATAATGCTCGTGTG 60.202 45.833 0.00 0.00 34.11 3.82
2234 2842 3.699538 TCACTAGGATAATGCTCGTGTGT 59.300 43.478 0.00 0.00 34.11 3.72
2235 2843 4.045104 CACTAGGATAATGCTCGTGTGTC 58.955 47.826 0.00 0.00 29.22 3.67
2236 2844 2.209838 AGGATAATGCTCGTGTGTCG 57.790 50.000 0.00 0.00 41.41 4.35
2237 2845 0.577269 GGATAATGCTCGTGTGTCGC 59.423 55.000 0.00 0.00 39.67 5.19
2238 2846 1.560923 GATAATGCTCGTGTGTCGCT 58.439 50.000 0.00 0.00 39.67 4.93
2239 2847 2.543031 GGATAATGCTCGTGTGTCGCTA 60.543 50.000 0.00 0.00 39.67 4.26
2240 2848 1.904144 TAATGCTCGTGTGTCGCTAC 58.096 50.000 0.00 0.00 39.67 3.58
2241 2849 1.071019 AATGCTCGTGTGTCGCTACG 61.071 55.000 0.00 0.00 41.38 3.51
2242 2850 2.867333 ATGCTCGTGTGTCGCTACGG 62.867 60.000 0.00 0.00 40.48 4.02
2243 2851 2.874780 CTCGTGTGTCGCTACGGC 60.875 66.667 0.00 0.00 40.48 5.68
2244 2852 3.604494 CTCGTGTGTCGCTACGGCA 62.604 63.158 0.00 0.00 39.83 5.69
2245 2853 2.731721 CGTGTGTCGCTACGGCAA 60.732 61.111 0.00 0.00 44.86 4.52
2246 2854 2.304401 CGTGTGTCGCTACGGCAAA 61.304 57.895 0.00 0.00 44.86 3.68
2247 2855 1.823260 CGTGTGTCGCTACGGCAAAA 61.823 55.000 0.00 0.00 44.86 2.44
2248 2856 0.110823 GTGTGTCGCTACGGCAAAAG 60.111 55.000 0.00 0.00 44.86 2.27
2249 2857 1.225376 TGTGTCGCTACGGCAAAAGG 61.225 55.000 0.00 0.00 44.86 3.11
2250 2858 2.322081 TGTCGCTACGGCAAAAGGC 61.322 57.895 0.00 0.00 38.94 4.35
2251 2859 3.115892 TCGCTACGGCAAAAGGCG 61.116 61.111 9.92 9.92 46.16 5.52
2253 2861 3.259930 GCTACGGCAAAAGGCGAA 58.740 55.556 18.17 0.00 46.16 4.70
2254 2862 1.577421 GCTACGGCAAAAGGCGAAA 59.423 52.632 18.17 4.98 46.16 3.46
2255 2863 0.039888 GCTACGGCAAAAGGCGAAAA 60.040 50.000 18.17 2.65 46.16 2.29
2256 2864 1.402325 GCTACGGCAAAAGGCGAAAAT 60.402 47.619 18.17 0.00 46.16 1.82
2257 2865 2.250188 CTACGGCAAAAGGCGAAAATG 58.750 47.619 18.17 0.14 46.16 2.32
2258 2866 0.387565 ACGGCAAAAGGCGAAAATGT 59.612 45.000 18.17 0.00 46.16 2.71
2259 2867 1.059942 CGGCAAAAGGCGAAAATGTC 58.940 50.000 5.46 0.00 46.16 3.06
2260 2868 1.335872 CGGCAAAAGGCGAAAATGTCT 60.336 47.619 5.46 0.00 46.16 3.41
2261 2869 2.328473 GGCAAAAGGCGAAAATGTCTC 58.672 47.619 0.00 0.00 46.16 3.36
2262 2870 2.288152 GGCAAAAGGCGAAAATGTCTCA 60.288 45.455 0.00 0.00 46.16 3.27
2263 2871 3.380142 GCAAAAGGCGAAAATGTCTCAA 58.620 40.909 0.00 0.00 0.00 3.02
2264 2872 3.426525 GCAAAAGGCGAAAATGTCTCAAG 59.573 43.478 0.00 0.00 0.00 3.02
2265 2873 2.997485 AAGGCGAAAATGTCTCAAGC 57.003 45.000 0.00 0.00 0.00 4.01
2266 2874 1.896220 AGGCGAAAATGTCTCAAGCA 58.104 45.000 0.00 0.00 0.00 3.91
2267 2875 2.440409 AGGCGAAAATGTCTCAAGCAT 58.560 42.857 0.00 0.00 0.00 3.79
2268 2876 2.163010 AGGCGAAAATGTCTCAAGCATG 59.837 45.455 0.00 0.00 0.00 4.06
2269 2877 2.095059 GGCGAAAATGTCTCAAGCATGT 60.095 45.455 0.00 0.00 0.00 3.21
2270 2878 3.568538 GCGAAAATGTCTCAAGCATGTT 58.431 40.909 0.00 0.00 0.00 2.71
2271 2879 4.379394 GGCGAAAATGTCTCAAGCATGTTA 60.379 41.667 0.00 0.00 0.00 2.41
2272 2880 4.554973 GCGAAAATGTCTCAAGCATGTTAC 59.445 41.667 0.00 0.00 0.00 2.50
2273 2881 5.688823 CGAAAATGTCTCAAGCATGTTACA 58.311 37.500 0.00 0.00 0.00 2.41
2274 2882 6.142139 CGAAAATGTCTCAAGCATGTTACAA 58.858 36.000 0.00 0.00 0.00 2.41
2275 2883 6.086765 CGAAAATGTCTCAAGCATGTTACAAC 59.913 38.462 0.00 0.00 0.00 3.32
2276 2884 6.389830 AAATGTCTCAAGCATGTTACAACA 57.610 33.333 0.00 0.00 44.06 3.33
2277 2885 6.389830 AATGTCTCAAGCATGTTACAACAA 57.610 33.333 0.00 0.00 43.03 2.83
2278 2886 5.422666 TGTCTCAAGCATGTTACAACAAG 57.577 39.130 0.00 0.00 43.03 3.16
2279 2887 4.881273 TGTCTCAAGCATGTTACAACAAGT 59.119 37.500 0.00 0.00 43.03 3.16
2280 2888 6.052360 TGTCTCAAGCATGTTACAACAAGTA 58.948 36.000 0.00 0.00 43.03 2.24
2281 2889 6.018262 TGTCTCAAGCATGTTACAACAAGTAC 60.018 38.462 0.00 0.00 43.03 2.73
2282 2890 6.202954 GTCTCAAGCATGTTACAACAAGTACT 59.797 38.462 0.00 0.00 43.03 2.73
2283 2891 7.384115 GTCTCAAGCATGTTACAACAAGTACTA 59.616 37.037 0.00 0.00 43.03 1.82
2284 2892 7.929245 TCTCAAGCATGTTACAACAAGTACTAA 59.071 33.333 0.00 0.00 43.03 2.24
2285 2893 8.615878 TCAAGCATGTTACAACAAGTACTAAT 57.384 30.769 0.00 0.00 43.03 1.73
2286 2894 9.062524 TCAAGCATGTTACAACAAGTACTAATT 57.937 29.630 0.00 0.00 43.03 1.40
2287 2895 9.677567 CAAGCATGTTACAACAAGTACTAATTT 57.322 29.630 0.00 0.00 43.03 1.82
2289 2897 9.893305 AGCATGTTACAACAAGTACTAATTTTC 57.107 29.630 0.00 0.00 43.03 2.29
2290 2898 9.893305 GCATGTTACAACAAGTACTAATTTTCT 57.107 29.630 0.00 0.00 43.03 2.52
2301 2909 9.974980 CAAGTACTAATTTTCTCTATCTCTCCC 57.025 37.037 0.00 0.00 0.00 4.30
2302 2910 8.715190 AGTACTAATTTTCTCTATCTCTCCCC 57.285 38.462 0.00 0.00 0.00 4.81
2303 2911 6.658188 ACTAATTTTCTCTATCTCTCCCCG 57.342 41.667 0.00 0.00 0.00 5.73
2304 2912 4.344359 AATTTTCTCTATCTCTCCCCGC 57.656 45.455 0.00 0.00 0.00 6.13
2305 2913 2.454336 TTTCTCTATCTCTCCCCGCA 57.546 50.000 0.00 0.00 0.00 5.69
2306 2914 2.685106 TTCTCTATCTCTCCCCGCAT 57.315 50.000 0.00 0.00 0.00 4.73
2307 2915 2.208132 TCTCTATCTCTCCCCGCATC 57.792 55.000 0.00 0.00 0.00 3.91
2308 2916 1.181786 CTCTATCTCTCCCCGCATCC 58.818 60.000 0.00 0.00 0.00 3.51
2309 2917 0.251832 TCTATCTCTCCCCGCATCCC 60.252 60.000 0.00 0.00 0.00 3.85
2310 2918 0.542938 CTATCTCTCCCCGCATCCCA 60.543 60.000 0.00 0.00 0.00 4.37
2311 2919 0.832135 TATCTCTCCCCGCATCCCAC 60.832 60.000 0.00 0.00 0.00 4.61
2312 2920 3.866582 CTCTCCCCGCATCCCACC 61.867 72.222 0.00 0.00 0.00 4.61
2313 2921 4.414956 TCTCCCCGCATCCCACCT 62.415 66.667 0.00 0.00 0.00 4.00
2314 2922 3.411517 CTCCCCGCATCCCACCTT 61.412 66.667 0.00 0.00 0.00 3.50
2315 2923 2.938798 TCCCCGCATCCCACCTTT 60.939 61.111 0.00 0.00 0.00 3.11
2316 2924 2.440247 CCCCGCATCCCACCTTTC 60.440 66.667 0.00 0.00 0.00 2.62
2317 2925 2.440247 CCCGCATCCCACCTTTCC 60.440 66.667 0.00 0.00 0.00 3.13
2318 2926 2.354729 CCGCATCCCACCTTTCCA 59.645 61.111 0.00 0.00 0.00 3.53
2319 2927 1.076777 CCGCATCCCACCTTTCCAT 60.077 57.895 0.00 0.00 0.00 3.41
2320 2928 1.103398 CCGCATCCCACCTTTCCATC 61.103 60.000 0.00 0.00 0.00 3.51
2321 2929 1.439353 CGCATCCCACCTTTCCATCG 61.439 60.000 0.00 0.00 0.00 3.84
2322 2930 0.107214 GCATCCCACCTTTCCATCGA 60.107 55.000 0.00 0.00 0.00 3.59
2323 2931 1.668419 CATCCCACCTTTCCATCGAC 58.332 55.000 0.00 0.00 0.00 4.20
2324 2932 0.546598 ATCCCACCTTTCCATCGACC 59.453 55.000 0.00 0.00 0.00 4.79
2325 2933 0.838554 TCCCACCTTTCCATCGACCA 60.839 55.000 0.00 0.00 0.00 4.02
2326 2934 0.676782 CCCACCTTTCCATCGACCAC 60.677 60.000 0.00 0.00 0.00 4.16
2327 2935 0.324943 CCACCTTTCCATCGACCACT 59.675 55.000 0.00 0.00 0.00 4.00
2328 2936 1.442769 CACCTTTCCATCGACCACTG 58.557 55.000 0.00 0.00 0.00 3.66
2329 2937 1.056660 ACCTTTCCATCGACCACTGT 58.943 50.000 0.00 0.00 0.00 3.55
2330 2938 1.270839 ACCTTTCCATCGACCACTGTG 60.271 52.381 0.00 0.00 0.00 3.66
2331 2939 1.001974 CCTTTCCATCGACCACTGTGA 59.998 52.381 9.86 0.00 0.00 3.58
2332 2940 2.355108 CCTTTCCATCGACCACTGTGAT 60.355 50.000 9.86 0.00 0.00 3.06
2333 2941 3.338249 CTTTCCATCGACCACTGTGATT 58.662 45.455 9.86 0.00 0.00 2.57
2334 2942 3.417069 TTCCATCGACCACTGTGATTT 57.583 42.857 9.86 0.00 0.00 2.17
2335 2943 3.417069 TCCATCGACCACTGTGATTTT 57.583 42.857 9.86 0.00 0.00 1.82
2336 2944 3.334691 TCCATCGACCACTGTGATTTTC 58.665 45.455 9.86 0.00 0.00 2.29
2337 2945 3.073678 CCATCGACCACTGTGATTTTCA 58.926 45.455 9.86 0.00 0.00 2.69
2338 2946 3.501828 CCATCGACCACTGTGATTTTCAA 59.498 43.478 9.86 0.00 0.00 2.69
2339 2947 4.378770 CCATCGACCACTGTGATTTTCAAG 60.379 45.833 9.86 0.00 0.00 3.02
2340 2948 2.548057 TCGACCACTGTGATTTTCAAGC 59.452 45.455 9.86 0.00 0.00 4.01
2341 2949 2.290367 CGACCACTGTGATTTTCAAGCA 59.710 45.455 9.86 0.00 0.00 3.91
2342 2950 3.607775 CGACCACTGTGATTTTCAAGCAG 60.608 47.826 9.86 0.00 0.00 4.24
2343 2951 2.624838 ACCACTGTGATTTTCAAGCAGG 59.375 45.455 9.86 0.00 28.23 4.85
2344 2952 2.608752 CCACTGTGATTTTCAAGCAGGC 60.609 50.000 9.86 0.00 28.23 4.85
2345 2953 2.295349 CACTGTGATTTTCAAGCAGGCT 59.705 45.455 0.32 0.00 28.23 4.58
2346 2954 2.961062 ACTGTGATTTTCAAGCAGGCTT 59.039 40.909 0.00 0.00 36.60 4.35
2347 2955 4.022935 CACTGTGATTTTCAAGCAGGCTTA 60.023 41.667 6.16 0.00 34.50 3.09
2348 2956 4.584325 ACTGTGATTTTCAAGCAGGCTTAA 59.416 37.500 6.16 0.00 34.50 1.85
2349 2957 5.068987 ACTGTGATTTTCAAGCAGGCTTAAA 59.931 36.000 6.16 5.41 34.50 1.52
2350 2958 6.100404 TGTGATTTTCAAGCAGGCTTAAAT 57.900 33.333 12.26 12.26 34.50 1.40
2351 2959 6.523840 TGTGATTTTCAAGCAGGCTTAAATT 58.476 32.000 6.16 5.10 34.50 1.82
2352 2960 6.991531 TGTGATTTTCAAGCAGGCTTAAATTT 59.008 30.769 6.16 0.00 34.50 1.82
2353 2961 7.498570 TGTGATTTTCAAGCAGGCTTAAATTTT 59.501 29.630 6.16 0.00 34.50 1.82
2354 2962 7.799914 GTGATTTTCAAGCAGGCTTAAATTTTG 59.200 33.333 6.16 0.00 34.50 2.44
2355 2963 7.714377 TGATTTTCAAGCAGGCTTAAATTTTGA 59.286 29.630 6.16 0.00 34.50 2.69
2356 2964 7.856145 TTTTCAAGCAGGCTTAAATTTTGAA 57.144 28.000 6.16 2.45 34.50 2.69
2357 2965 7.481275 TTTCAAGCAGGCTTAAATTTTGAAG 57.519 32.000 6.16 0.00 35.35 3.02
2358 2966 6.403866 TCAAGCAGGCTTAAATTTTGAAGA 57.596 33.333 6.16 0.00 34.50 2.87
2359 2967 6.996509 TCAAGCAGGCTTAAATTTTGAAGAT 58.003 32.000 6.16 0.00 34.50 2.40
2360 2968 7.092716 TCAAGCAGGCTTAAATTTTGAAGATC 58.907 34.615 6.16 0.00 34.50 2.75
2361 2969 6.594788 AGCAGGCTTAAATTTTGAAGATCA 57.405 33.333 0.00 0.00 0.00 2.92
2362 2970 6.996509 AGCAGGCTTAAATTTTGAAGATCAA 58.003 32.000 0.00 0.00 34.03 2.57
2363 2971 7.444299 AGCAGGCTTAAATTTTGAAGATCAAA 58.556 30.769 0.00 1.57 43.84 2.69
2364 2972 8.098912 AGCAGGCTTAAATTTTGAAGATCAAAT 58.901 29.630 6.38 0.00 44.75 2.32
2365 2973 8.724229 GCAGGCTTAAATTTTGAAGATCAAATT 58.276 29.630 6.38 1.19 44.75 1.82
2374 2982 9.720769 AATTTTGAAGATCAAATTGAAGCATCT 57.279 25.926 0.00 0.00 44.75 2.90
2377 2985 9.630098 TTTGAAGATCAAATTGAAGCATCTAAC 57.370 29.630 0.00 0.00 41.02 2.34
2378 2986 7.466805 TGAAGATCAAATTGAAGCATCTAACG 58.533 34.615 0.00 0.00 0.00 3.18
2379 2987 7.334171 TGAAGATCAAATTGAAGCATCTAACGA 59.666 33.333 0.00 0.00 0.00 3.85
2380 2988 7.615582 AGATCAAATTGAAGCATCTAACGAA 57.384 32.000 0.00 0.00 0.00 3.85
2381 2989 7.692088 AGATCAAATTGAAGCATCTAACGAAG 58.308 34.615 0.00 0.00 0.00 3.79
2382 2990 7.550551 AGATCAAATTGAAGCATCTAACGAAGA 59.449 33.333 0.00 0.00 39.02 2.87
2383 2991 7.065216 TCAAATTGAAGCATCTAACGAAGAG 57.935 36.000 0.00 0.00 37.74 2.85
2384 2992 6.873605 TCAAATTGAAGCATCTAACGAAGAGA 59.126 34.615 0.00 0.00 37.74 3.10
2385 2993 7.387673 TCAAATTGAAGCATCTAACGAAGAGAA 59.612 33.333 0.00 0.00 37.74 2.87
2386 2994 6.900568 ATTGAAGCATCTAACGAAGAGAAG 57.099 37.500 0.00 0.00 37.74 2.85
2387 2995 4.177026 TGAAGCATCTAACGAAGAGAAGC 58.823 43.478 0.00 0.00 37.74 3.86
2388 2996 2.803451 AGCATCTAACGAAGAGAAGCG 58.197 47.619 0.00 0.00 37.74 4.68
2389 2997 2.423892 AGCATCTAACGAAGAGAAGCGA 59.576 45.455 0.00 0.00 37.74 4.93
2390 2998 3.119459 AGCATCTAACGAAGAGAAGCGAA 60.119 43.478 0.00 0.00 37.74 4.70
2391 2999 3.799420 GCATCTAACGAAGAGAAGCGAAT 59.201 43.478 0.00 0.00 37.74 3.34
2392 3000 4.317698 GCATCTAACGAAGAGAAGCGAATG 60.318 45.833 0.00 0.00 37.74 2.67
2393 3001 4.696899 TCTAACGAAGAGAAGCGAATGA 57.303 40.909 0.00 0.00 0.00 2.57
2394 3002 5.250235 TCTAACGAAGAGAAGCGAATGAT 57.750 39.130 0.00 0.00 0.00 2.45
2395 3003 6.373186 TCTAACGAAGAGAAGCGAATGATA 57.627 37.500 0.00 0.00 0.00 2.15
2396 3004 6.971602 TCTAACGAAGAGAAGCGAATGATAT 58.028 36.000 0.00 0.00 0.00 1.63
2397 3005 5.896922 AACGAAGAGAAGCGAATGATATG 57.103 39.130 0.00 0.00 0.00 1.78
2398 3006 5.188327 ACGAAGAGAAGCGAATGATATGA 57.812 39.130 0.00 0.00 0.00 2.15
2399 3007 5.777802 ACGAAGAGAAGCGAATGATATGAT 58.222 37.500 0.00 0.00 0.00 2.45
2400 3008 5.632764 ACGAAGAGAAGCGAATGATATGATG 59.367 40.000 0.00 0.00 0.00 3.07
2401 3009 5.444350 CGAAGAGAAGCGAATGATATGATGC 60.444 44.000 0.00 0.00 0.00 3.91
2402 3010 4.891260 AGAGAAGCGAATGATATGATGCA 58.109 39.130 0.00 0.00 0.00 3.96
2403 3011 5.303165 AGAGAAGCGAATGATATGATGCAA 58.697 37.500 0.00 0.00 0.00 4.08
2404 3012 5.408909 AGAGAAGCGAATGATATGATGCAAG 59.591 40.000 0.00 0.00 0.00 4.01
2405 3013 5.303165 AGAAGCGAATGATATGATGCAAGA 58.697 37.500 0.00 0.00 0.00 3.02
2406 3014 5.408909 AGAAGCGAATGATATGATGCAAGAG 59.591 40.000 0.00 0.00 0.00 2.85
2407 3015 4.639334 AGCGAATGATATGATGCAAGAGT 58.361 39.130 0.00 0.00 0.00 3.24
2408 3016 5.061853 AGCGAATGATATGATGCAAGAGTT 58.938 37.500 0.00 0.00 0.00 3.01
2409 3017 6.226052 AGCGAATGATATGATGCAAGAGTTA 58.774 36.000 0.00 0.00 0.00 2.24
2410 3018 6.877855 AGCGAATGATATGATGCAAGAGTTAT 59.122 34.615 0.00 0.00 0.00 1.89
2411 3019 7.064371 AGCGAATGATATGATGCAAGAGTTATC 59.936 37.037 0.00 0.00 0.00 1.75
2412 3020 7.064371 GCGAATGATATGATGCAAGAGTTATCT 59.936 37.037 0.00 0.00 37.39 1.98
2459 3067 9.750125 AATTTTGTTGATGAACCTCTAGTTTTC 57.250 29.630 0.00 0.00 39.40 2.29
2460 3068 8.519799 TTTTGTTGATGAACCTCTAGTTTTCT 57.480 30.769 0.00 0.00 39.40 2.52
2461 3069 8.519799 TTTGTTGATGAACCTCTAGTTTTCTT 57.480 30.769 0.00 0.00 39.40 2.52
2462 3070 8.519799 TTGTTGATGAACCTCTAGTTTTCTTT 57.480 30.769 0.00 0.00 39.40 2.52
2463 3071 7.930217 TGTTGATGAACCTCTAGTTTTCTTTG 58.070 34.615 0.00 0.00 39.40 2.77
2464 3072 7.773224 TGTTGATGAACCTCTAGTTTTCTTTGA 59.227 33.333 0.00 0.00 39.40 2.69
2465 3073 8.787852 GTTGATGAACCTCTAGTTTTCTTTGAT 58.212 33.333 0.00 0.00 39.40 2.57
2466 3074 8.327941 TGATGAACCTCTAGTTTTCTTTGATG 57.672 34.615 0.00 0.00 39.40 3.07
2467 3075 7.939039 TGATGAACCTCTAGTTTTCTTTGATGT 59.061 33.333 0.00 0.00 39.40 3.06
2468 3076 9.436957 GATGAACCTCTAGTTTTCTTTGATGTA 57.563 33.333 0.00 0.00 39.40 2.29
2469 3077 9.793259 ATGAACCTCTAGTTTTCTTTGATGTAA 57.207 29.630 0.00 0.00 39.40 2.41
2470 3078 9.793259 TGAACCTCTAGTTTTCTTTGATGTAAT 57.207 29.630 0.00 0.00 39.40 1.89
2473 3081 9.442047 ACCTCTAGTTTTCTTTGATGTAATCTG 57.558 33.333 0.00 0.00 45.81 2.90
2474 3082 9.658799 CCTCTAGTTTTCTTTGATGTAATCTGA 57.341 33.333 0.00 0.00 45.81 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 37 1.303317 CTTGTTTCCAGGGGGTCCG 60.303 63.158 0.00 0.00 38.33 4.79
36 38 1.606601 GCTTGTTTCCAGGGGGTCC 60.607 63.158 0.00 0.00 34.93 4.46
101 103 0.546747 AATGACGGAGGGTGGAGGAA 60.547 55.000 0.00 0.00 0.00 3.36
215 640 1.151777 ACGCAGGTAAATCATCGCCG 61.152 55.000 0.00 0.00 0.00 6.46
455 966 3.087176 GACGAATCCGGCGGTTTC 58.913 61.111 30.55 30.55 40.78 2.78
470 981 1.749638 TTCCTCTCTCTCCGGCGAC 60.750 63.158 9.30 0.00 0.00 5.19
471 982 1.749638 GTTCCTCTCTCTCCGGCGA 60.750 63.158 9.30 0.00 0.00 5.54
472 983 2.802106 GTTCCTCTCTCTCCGGCG 59.198 66.667 0.00 0.00 0.00 6.46
473 984 2.776913 CCGTTCCTCTCTCTCCGGC 61.777 68.421 0.00 0.00 0.00 6.13
474 985 2.776913 GCCGTTCCTCTCTCTCCGG 61.777 68.421 0.00 0.00 38.45 5.14
475 986 1.751162 AGCCGTTCCTCTCTCTCCG 60.751 63.158 0.00 0.00 0.00 4.63
476 987 0.968393 ACAGCCGTTCCTCTCTCTCC 60.968 60.000 0.00 0.00 0.00 3.71
477 988 0.892063 AACAGCCGTTCCTCTCTCTC 59.108 55.000 0.00 0.00 0.00 3.20
478 989 1.273886 GAAACAGCCGTTCCTCTCTCT 59.726 52.381 0.00 0.00 32.91 3.10
479 990 1.000955 TGAAACAGCCGTTCCTCTCTC 59.999 52.381 0.00 0.00 32.91 3.20
480 991 1.048601 TGAAACAGCCGTTCCTCTCT 58.951 50.000 0.00 0.00 32.91 3.10
481 992 1.878953 TTGAAACAGCCGTTCCTCTC 58.121 50.000 0.00 0.00 32.91 3.20
482 993 2.341846 TTTGAAACAGCCGTTCCTCT 57.658 45.000 0.00 0.00 32.91 3.69
483 994 2.543031 GGTTTTGAAACAGCCGTTCCTC 60.543 50.000 8.68 0.00 40.63 3.71
484 995 1.407618 GGTTTTGAAACAGCCGTTCCT 59.592 47.619 8.68 0.00 40.63 3.36
485 996 1.847818 GGTTTTGAAACAGCCGTTCC 58.152 50.000 8.68 0.00 40.63 3.62
486 997 1.472990 CGGTTTTGAAACAGCCGTTC 58.527 50.000 8.68 0.00 40.63 3.95
487 998 0.101579 CCGGTTTTGAAACAGCCGTT 59.898 50.000 8.68 0.00 40.63 4.44
488 999 0.748729 TCCGGTTTTGAAACAGCCGT 60.749 50.000 0.00 0.00 40.63 5.68
489 1000 0.040425 CTCCGGTTTTGAAACAGCCG 60.040 55.000 0.00 7.49 40.63 5.52
490 1001 0.313987 CCTCCGGTTTTGAAACAGCC 59.686 55.000 0.00 0.00 40.63 4.85
491 1002 1.266989 CTCCTCCGGTTTTGAAACAGC 59.733 52.381 0.00 0.00 40.63 4.40
499 1010 0.250770 GGAACTGCTCCTCCGGTTTT 60.251 55.000 0.00 0.00 41.61 2.43
565 1084 2.286425 CCACCACTCCCCCATCCT 60.286 66.667 0.00 0.00 0.00 3.24
770 1292 6.262193 TCGAGAAAGTCCAAAACAAAAACT 57.738 33.333 0.00 0.00 0.00 2.66
810 1332 1.990799 TGGAAGAATGTGCTACGTCG 58.009 50.000 0.00 0.00 0.00 5.12
823 1346 4.018779 ACCGGGATTTACAAGATTGGAAGA 60.019 41.667 6.32 0.00 31.55 2.87
925 1449 2.158279 TGCGGAGGTGGGGTATATAAGA 60.158 50.000 0.00 0.00 0.00 2.10
965 1489 3.973516 ACGCGAGTTGTCTCCGCA 61.974 61.111 15.93 0.00 46.40 5.69
967 1491 3.470567 GCACGCGAGTTGTCTCCG 61.471 66.667 15.93 0.00 46.40 4.63
983 1516 3.326889 ATCACGCACGCACAATGGC 62.327 57.895 0.00 0.00 0.00 4.40
1179 1745 3.458163 TACTCCTCCCGCGCCTTG 61.458 66.667 0.00 0.00 0.00 3.61
1498 2067 0.039618 AATGGGTCTTCGGTGGCATT 59.960 50.000 0.00 0.00 0.00 3.56
1509 2078 0.712380 AATCCCTGCCAAATGGGTCT 59.288 50.000 0.90 0.00 43.74 3.85
1536 2112 9.077885 AGGAAATTACTGCTGATTGTCTAAAAA 57.922 29.630 0.00 0.00 0.00 1.94
1537 2113 8.635765 AGGAAATTACTGCTGATTGTCTAAAA 57.364 30.769 0.00 0.00 0.00 1.52
1538 2114 9.162764 GTAGGAAATTACTGCTGATTGTCTAAA 57.837 33.333 0.00 0.00 0.00 1.85
1539 2115 8.540388 AGTAGGAAATTACTGCTGATTGTCTAA 58.460 33.333 0.00 0.00 32.78 2.10
1540 2116 8.079211 AGTAGGAAATTACTGCTGATTGTCTA 57.921 34.615 0.00 0.00 32.78 2.59
1541 2117 6.951971 AGTAGGAAATTACTGCTGATTGTCT 58.048 36.000 0.00 0.00 32.78 3.41
1542 2118 7.042389 GCTAGTAGGAAATTACTGCTGATTGTC 60.042 40.741 6.06 0.00 35.57 3.18
1543 2119 6.763610 GCTAGTAGGAAATTACTGCTGATTGT 59.236 38.462 6.06 0.00 35.57 2.71
1544 2120 6.989169 AGCTAGTAGGAAATTACTGCTGATTG 59.011 38.462 6.06 0.00 37.02 2.67
1545 2121 7.130681 AGCTAGTAGGAAATTACTGCTGATT 57.869 36.000 6.06 0.00 37.02 2.57
1546 2122 6.739331 AGCTAGTAGGAAATTACTGCTGAT 57.261 37.500 6.06 0.00 37.02 2.90
1547 2123 6.040616 GGTAGCTAGTAGGAAATTACTGCTGA 59.959 42.308 6.06 0.00 37.93 4.26
1548 2124 6.217294 GGTAGCTAGTAGGAAATTACTGCTG 58.783 44.000 6.06 0.00 37.93 4.41
1549 2125 5.304871 GGGTAGCTAGTAGGAAATTACTGCT 59.695 44.000 0.67 0.67 39.30 4.24
1550 2126 5.539979 GGGTAGCTAGTAGGAAATTACTGC 58.460 45.833 0.00 0.00 35.57 4.40
1551 2127 5.278858 CCGGGTAGCTAGTAGGAAATTACTG 60.279 48.000 0.00 0.00 35.57 2.74
1552 2128 4.831710 CCGGGTAGCTAGTAGGAAATTACT 59.168 45.833 0.00 0.00 37.61 2.24
1553 2129 4.021632 CCCGGGTAGCTAGTAGGAAATTAC 60.022 50.000 14.18 0.00 0.00 1.89
1554 2130 4.154942 CCCGGGTAGCTAGTAGGAAATTA 58.845 47.826 14.18 0.00 0.00 1.40
1571 2147 0.251916 TGTATCAACAGAAGCCCGGG 59.748 55.000 19.09 19.09 0.00 5.73
1585 2161 0.739561 AGAGACGACGGGCTTGTATC 59.260 55.000 0.00 0.00 0.00 2.24
1615 2191 3.064324 GAGCGCACTGGCCCAATT 61.064 61.111 11.47 0.00 36.38 2.32
1628 2208 0.458543 AGGCTGACGTTGTATGAGCG 60.459 55.000 0.00 0.00 0.00 5.03
1639 2219 2.874701 CCAGGATTAATTCAGGCTGACG 59.125 50.000 18.55 0.96 0.00 4.35
1654 2234 3.810743 GCCTCAACTTGTACAACCAGGAT 60.811 47.826 16.42 0.00 0.00 3.24
1660 2240 2.572290 ACAGGCCTCAACTTGTACAAC 58.428 47.619 0.00 0.00 0.00 3.32
1698 2278 2.963101 GGGTAACAGGCCTCAACTTTTT 59.037 45.455 0.00 0.00 39.74 1.94
1699 2279 2.177016 AGGGTAACAGGCCTCAACTTTT 59.823 45.455 0.00 0.00 39.74 2.27
1700 2280 1.780919 AGGGTAACAGGCCTCAACTTT 59.219 47.619 0.00 0.00 39.74 2.66
1701 2281 1.073923 CAGGGTAACAGGCCTCAACTT 59.926 52.381 0.00 0.00 39.74 2.66
1702 2282 0.693049 CAGGGTAACAGGCCTCAACT 59.307 55.000 0.00 0.00 39.74 3.16
1703 2283 0.400594 ACAGGGTAACAGGCCTCAAC 59.599 55.000 0.00 0.28 39.74 3.18
1704 2284 1.073284 GAACAGGGTAACAGGCCTCAA 59.927 52.381 0.00 0.00 39.74 3.02
1705 2285 0.690762 GAACAGGGTAACAGGCCTCA 59.309 55.000 0.00 0.00 39.74 3.86
1706 2286 0.984995 AGAACAGGGTAACAGGCCTC 59.015 55.000 0.00 0.00 39.74 4.70
1707 2287 0.984995 GAGAACAGGGTAACAGGCCT 59.015 55.000 0.00 0.00 39.74 5.19
1708 2288 0.984995 AGAGAACAGGGTAACAGGCC 59.015 55.000 0.00 0.00 39.74 5.19
1709 2289 1.066071 GGAGAGAACAGGGTAACAGGC 60.066 57.143 0.00 0.00 39.74 4.85
1710 2290 1.555533 GGGAGAGAACAGGGTAACAGG 59.444 57.143 0.00 0.00 39.74 4.00
1711 2291 1.555533 GGGGAGAGAACAGGGTAACAG 59.444 57.143 0.00 0.00 39.74 3.16
1768 2353 9.722184 TTCATATGGATCAGATCATTCTTCTTC 57.278 33.333 12.66 0.00 0.00 2.87
1786 2371 5.303589 AGCCCTCACATGAAATTTCATATGG 59.696 40.000 29.78 25.09 45.62 2.74
1810 2395 1.327303 ATTTCCTGCGGTGCAAAGAA 58.673 45.000 0.00 0.00 38.41 2.52
1816 2401 6.640907 CCTATATTTTTAATTTCCTGCGGTGC 59.359 38.462 0.00 0.00 0.00 5.01
1884 2474 2.035321 ACCTAATTGCGGTGTGGTTTTG 59.965 45.455 0.92 0.00 32.41 2.44
1886 2476 1.883926 GACCTAATTGCGGTGTGGTTT 59.116 47.619 6.04 0.00 34.19 3.27
1889 2479 1.529226 TTGACCTAATTGCGGTGTGG 58.471 50.000 6.04 0.00 34.19 4.17
1890 2480 3.848272 AATTGACCTAATTGCGGTGTG 57.152 42.857 6.04 0.00 37.59 3.82
1891 2481 5.968528 TTAAATTGACCTAATTGCGGTGT 57.031 34.783 6.04 0.00 38.93 4.16
1925 2528 8.839914 GTGCTTTTTGACAGAAAAACAAAAATC 58.160 29.630 14.28 11.83 45.57 2.17
1932 2535 4.201714 GCCAGTGCTTTTTGACAGAAAAAC 60.202 41.667 0.00 0.00 33.53 2.43
1989 2593 3.302699 GGACGTGAAAGCGTGATTACTAC 59.697 47.826 0.00 0.00 45.79 2.73
1999 2603 1.301401 TTGGAGGGACGTGAAAGCG 60.301 57.895 0.00 0.00 37.94 4.68
2002 2606 0.768622 ATGGTTGGAGGGACGTGAAA 59.231 50.000 0.00 0.00 0.00 2.69
2005 2609 2.555123 CAATGGTTGGAGGGACGTG 58.445 57.895 0.00 0.00 0.00 4.49
2016 2620 2.675075 CGAACGGGCCCAATGGTT 60.675 61.111 24.92 17.87 0.00 3.67
2017 2621 2.127027 TAACGAACGGGCCCAATGGT 62.127 55.000 24.92 14.24 0.00 3.55
2021 2625 2.348243 CCTAACGAACGGGCCCAA 59.652 61.111 24.92 0.00 0.00 4.12
2028 2632 5.783100 TTATTTTACCAGCCTAACGAACG 57.217 39.130 0.00 0.00 0.00 3.95
2029 2633 5.969435 GCATTATTTTACCAGCCTAACGAAC 59.031 40.000 0.00 0.00 0.00 3.95
2030 2634 5.066764 GGCATTATTTTACCAGCCTAACGAA 59.933 40.000 0.00 0.00 39.02 3.85
2031 2635 4.577283 GGCATTATTTTACCAGCCTAACGA 59.423 41.667 0.00 0.00 39.02 3.85
2032 2636 4.336993 TGGCATTATTTTACCAGCCTAACG 59.663 41.667 0.00 0.00 42.46 3.18
2033 2637 5.126384 TGTGGCATTATTTTACCAGCCTAAC 59.874 40.000 0.00 0.00 42.46 2.34
2035 2639 4.642885 GTGTGGCATTATTTTACCAGCCTA 59.357 41.667 0.00 0.00 42.46 3.93
2036 2640 3.447229 GTGTGGCATTATTTTACCAGCCT 59.553 43.478 0.00 0.00 42.46 4.58
2038 2642 3.119637 ACGTGTGGCATTATTTTACCAGC 60.120 43.478 0.00 0.00 31.46 4.85
2039 2643 4.155099 TGACGTGTGGCATTATTTTACCAG 59.845 41.667 0.00 0.00 31.46 4.00
2043 2651 5.888691 ATGTGACGTGTGGCATTATTTTA 57.111 34.783 0.00 0.00 0.00 1.52
2046 2654 4.782019 AAATGTGACGTGTGGCATTATT 57.218 36.364 0.00 0.00 32.09 1.40
2061 2669 3.084786 GGGGAAGAGGAGTCAAAATGTG 58.915 50.000 0.00 0.00 0.00 3.21
2063 2671 3.439857 TGGGGAAGAGGAGTCAAAATG 57.560 47.619 0.00 0.00 0.00 2.32
2065 2673 3.657727 AGATTGGGGAAGAGGAGTCAAAA 59.342 43.478 0.00 0.00 0.00 2.44
2066 2674 3.260205 AGATTGGGGAAGAGGAGTCAAA 58.740 45.455 0.00 0.00 0.00 2.69
2067 2675 2.840651 GAGATTGGGGAAGAGGAGTCAA 59.159 50.000 0.00 0.00 0.00 3.18
2068 2676 2.472029 GAGATTGGGGAAGAGGAGTCA 58.528 52.381 0.00 0.00 0.00 3.41
2069 2677 1.765904 GGAGATTGGGGAAGAGGAGTC 59.234 57.143 0.00 0.00 0.00 3.36
2072 2680 0.725133 AGGGAGATTGGGGAAGAGGA 59.275 55.000 0.00 0.00 0.00 3.71
2073 2681 1.135960 GAGGGAGATTGGGGAAGAGG 58.864 60.000 0.00 0.00 0.00 3.69
2074 2682 0.755686 CGAGGGAGATTGGGGAAGAG 59.244 60.000 0.00 0.00 0.00 2.85
2075 2683 0.042731 ACGAGGGAGATTGGGGAAGA 59.957 55.000 0.00 0.00 0.00 2.87
2076 2684 0.179000 CACGAGGGAGATTGGGGAAG 59.821 60.000 0.00 0.00 0.00 3.46
2077 2685 1.910580 GCACGAGGGAGATTGGGGAA 61.911 60.000 0.00 0.00 0.00 3.97
2078 2686 2.367202 GCACGAGGGAGATTGGGGA 61.367 63.158 0.00 0.00 0.00 4.81
2082 2690 3.470709 ACATAATGCACGAGGGAGATTG 58.529 45.455 0.00 0.00 0.00 2.67
2083 2691 3.733337 GACATAATGCACGAGGGAGATT 58.267 45.455 0.00 0.00 0.00 2.40
2084 2692 2.288457 CGACATAATGCACGAGGGAGAT 60.288 50.000 0.00 0.00 0.00 2.75
2089 2697 0.855349 GCTCGACATAATGCACGAGG 59.145 55.000 19.69 2.45 42.87 4.63
2121 2729 1.917495 CATGGAGGAGGTGATGGCA 59.083 57.895 0.00 0.00 0.00 4.92
2123 2731 1.150081 GGCATGGAGGAGGTGATGG 59.850 63.158 0.00 0.00 0.00 3.51
2138 2746 1.762957 GAGGCACTATAGAGTTGGGCA 59.237 52.381 6.78 0.00 41.55 5.36
2145 2753 1.032794 TGGCACGAGGCACTATAGAG 58.967 55.000 6.78 0.00 46.46 2.43
2146 2754 3.200918 TGGCACGAGGCACTATAGA 57.799 52.632 6.78 0.00 46.46 1.98
2162 2770 0.809636 TGTATGTTCGCCGCTGATGG 60.810 55.000 0.00 0.00 0.00 3.51
2163 2771 0.301687 GTGTATGTTCGCCGCTGATG 59.698 55.000 0.00 0.00 0.00 3.07
2164 2772 0.810031 GGTGTATGTTCGCCGCTGAT 60.810 55.000 0.00 0.00 0.00 2.90
2165 2773 1.447140 GGTGTATGTTCGCCGCTGA 60.447 57.895 0.00 0.00 0.00 4.26
2166 2774 1.089481 ATGGTGTATGTTCGCCGCTG 61.089 55.000 0.00 0.00 40.48 5.18
2167 2775 1.089481 CATGGTGTATGTTCGCCGCT 61.089 55.000 0.00 0.00 40.48 5.52
2168 2776 1.351707 CATGGTGTATGTTCGCCGC 59.648 57.895 0.00 0.00 40.48 6.53
2169 2777 1.351707 GCATGGTGTATGTTCGCCG 59.648 57.895 0.00 0.00 40.48 6.46
2170 2778 1.351707 CGCATGGTGTATGTTCGCC 59.648 57.895 0.00 0.00 39.08 5.54
2171 2779 0.247655 CACGCATGGTGTATGTTCGC 60.248 55.000 0.00 0.00 41.89 4.70
2172 2780 3.875813 CACGCATGGTGTATGTTCG 57.124 52.632 0.00 0.00 41.89 3.95
2173 2781 6.702944 TCATCATCACGCATGGTGTATGTTC 61.703 44.000 12.26 0.00 43.42 3.18
2174 2782 4.922933 TCATCATCACGCATGGTGTATGTT 60.923 41.667 12.26 8.29 43.42 2.71
2175 2783 3.432046 TCATCATCACGCATGGTGTATGT 60.432 43.478 12.26 5.73 43.42 2.29
2176 2784 3.132925 TCATCATCACGCATGGTGTATG 58.867 45.455 12.26 13.18 43.42 2.39
2177 2785 3.181462 ACTCATCATCACGCATGGTGTAT 60.181 43.478 12.26 4.70 43.42 2.29
2178 2786 2.168313 ACTCATCATCACGCATGGTGTA 59.832 45.455 12.26 3.00 43.42 2.90
2179 2787 1.065926 ACTCATCATCACGCATGGTGT 60.066 47.619 12.26 0.00 43.42 4.16
2180 2788 1.329599 CACTCATCATCACGCATGGTG 59.670 52.381 7.72 7.72 44.23 4.17
2181 2789 1.065926 ACACTCATCATCACGCATGGT 60.066 47.619 0.00 0.00 32.64 3.55
2182 2790 1.660167 ACACTCATCATCACGCATGG 58.340 50.000 0.00 0.00 32.64 3.66
2183 2791 5.413969 AAATACACTCATCATCACGCATG 57.586 39.130 0.00 0.00 0.00 4.06
2184 2792 6.441093 AAAAATACACTCATCATCACGCAT 57.559 33.333 0.00 0.00 0.00 4.73
2185 2793 5.878332 AAAAATACACTCATCATCACGCA 57.122 34.783 0.00 0.00 0.00 5.24
2186 2794 6.682863 GTGTAAAAATACACTCATCATCACGC 59.317 38.462 10.95 0.00 44.99 5.34
2202 2810 9.331282 GAGCATTATCCTAGTGAGTGTAAAAAT 57.669 33.333 0.00 0.00 0.00 1.82
2203 2811 7.491372 CGAGCATTATCCTAGTGAGTGTAAAAA 59.509 37.037 0.00 0.00 0.00 1.94
2204 2812 6.978659 CGAGCATTATCCTAGTGAGTGTAAAA 59.021 38.462 0.00 0.00 0.00 1.52
2205 2813 6.096423 ACGAGCATTATCCTAGTGAGTGTAAA 59.904 38.462 0.00 0.00 0.00 2.01
2206 2814 5.593095 ACGAGCATTATCCTAGTGAGTGTAA 59.407 40.000 0.00 0.00 0.00 2.41
2207 2815 5.008712 CACGAGCATTATCCTAGTGAGTGTA 59.991 44.000 0.00 0.00 37.91 2.90
2208 2816 3.954904 ACGAGCATTATCCTAGTGAGTGT 59.045 43.478 0.00 0.00 0.00 3.55
2209 2817 4.202060 ACACGAGCATTATCCTAGTGAGTG 60.202 45.833 3.49 0.00 37.91 3.51
2210 2818 3.954904 ACACGAGCATTATCCTAGTGAGT 59.045 43.478 3.49 0.00 37.91 3.41
2211 2819 4.202060 ACACACGAGCATTATCCTAGTGAG 60.202 45.833 3.49 0.00 37.91 3.51
2212 2820 3.699538 ACACACGAGCATTATCCTAGTGA 59.300 43.478 3.49 0.00 37.91 3.41
2213 2821 4.045104 GACACACGAGCATTATCCTAGTG 58.955 47.826 0.00 0.00 40.38 2.74
2214 2822 3.243101 CGACACACGAGCATTATCCTAGT 60.243 47.826 0.00 0.00 45.77 2.57
2215 2823 3.300857 CGACACACGAGCATTATCCTAG 58.699 50.000 0.00 0.00 45.77 3.02
2216 2824 2.543031 GCGACACACGAGCATTATCCTA 60.543 50.000 0.00 0.00 45.77 2.94
2217 2825 1.802880 GCGACACACGAGCATTATCCT 60.803 52.381 0.00 0.00 45.77 3.24
2218 2826 0.577269 GCGACACACGAGCATTATCC 59.423 55.000 0.00 0.00 45.77 2.59
2219 2827 1.560923 AGCGACACACGAGCATTATC 58.439 50.000 0.00 0.00 45.77 1.75
2220 2828 2.460918 GTAGCGACACACGAGCATTAT 58.539 47.619 0.00 0.00 45.77 1.28
2221 2829 1.792632 CGTAGCGACACACGAGCATTA 60.793 52.381 0.00 0.00 45.77 1.90
2222 2830 1.071019 CGTAGCGACACACGAGCATT 61.071 55.000 0.00 0.00 45.77 3.56
2223 2831 1.514228 CGTAGCGACACACGAGCAT 60.514 57.895 0.00 0.00 45.77 3.79
2224 2832 2.127003 CGTAGCGACACACGAGCA 60.127 61.111 0.00 0.00 45.77 4.26
2225 2833 2.874780 CCGTAGCGACACACGAGC 60.875 66.667 0.00 0.00 45.77 5.03
2226 2834 2.874780 GCCGTAGCGACACACGAG 60.875 66.667 0.00 0.00 45.77 4.18
2227 2835 2.680693 TTTGCCGTAGCGACACACGA 62.681 55.000 0.00 0.00 45.77 4.35
2228 2836 1.823260 TTTTGCCGTAGCGACACACG 61.823 55.000 0.00 0.00 44.31 4.49
2229 2837 0.110823 CTTTTGCCGTAGCGACACAC 60.111 55.000 0.00 0.00 44.31 3.82
2230 2838 1.225376 CCTTTTGCCGTAGCGACACA 61.225 55.000 0.00 0.00 44.31 3.72
2231 2839 1.495951 CCTTTTGCCGTAGCGACAC 59.504 57.895 0.00 0.00 44.31 3.67
2232 2840 2.322081 GCCTTTTGCCGTAGCGACA 61.322 57.895 0.00 0.00 44.31 4.35
2233 2841 2.479198 GCCTTTTGCCGTAGCGAC 59.521 61.111 0.00 0.00 44.31 5.19
2236 2844 0.039888 TTTTCGCCTTTTGCCGTAGC 60.040 50.000 0.00 0.00 36.24 3.58
2237 2845 2.250188 CATTTTCGCCTTTTGCCGTAG 58.750 47.619 0.00 0.00 36.24 3.51
2238 2846 1.609555 ACATTTTCGCCTTTTGCCGTA 59.390 42.857 0.00 0.00 36.24 4.02
2239 2847 0.387565 ACATTTTCGCCTTTTGCCGT 59.612 45.000 0.00 0.00 36.24 5.68
2240 2848 1.059942 GACATTTTCGCCTTTTGCCG 58.940 50.000 0.00 0.00 36.24 5.69
2241 2849 2.288152 TGAGACATTTTCGCCTTTTGCC 60.288 45.455 0.00 0.00 36.24 4.52
2242 2850 3.011949 TGAGACATTTTCGCCTTTTGC 57.988 42.857 0.00 0.00 0.00 3.68
2243 2851 3.426525 GCTTGAGACATTTTCGCCTTTTG 59.573 43.478 0.00 0.00 0.00 2.44
2244 2852 3.068024 TGCTTGAGACATTTTCGCCTTTT 59.932 39.130 0.00 0.00 0.00 2.27
2245 2853 2.622942 TGCTTGAGACATTTTCGCCTTT 59.377 40.909 0.00 0.00 0.00 3.11
2246 2854 2.229792 TGCTTGAGACATTTTCGCCTT 58.770 42.857 0.00 0.00 0.00 4.35
2247 2855 1.896220 TGCTTGAGACATTTTCGCCT 58.104 45.000 0.00 0.00 0.00 5.52
2248 2856 2.095059 ACATGCTTGAGACATTTTCGCC 60.095 45.455 6.60 0.00 0.00 5.54
2249 2857 3.207474 ACATGCTTGAGACATTTTCGC 57.793 42.857 6.60 0.00 0.00 4.70
2250 2858 5.688823 TGTAACATGCTTGAGACATTTTCG 58.311 37.500 6.60 0.00 0.00 3.46
2251 2859 6.917477 TGTTGTAACATGCTTGAGACATTTTC 59.083 34.615 6.60 3.09 33.17 2.29
2252 2860 6.804677 TGTTGTAACATGCTTGAGACATTTT 58.195 32.000 6.60 0.00 33.17 1.82
2253 2861 6.389830 TGTTGTAACATGCTTGAGACATTT 57.610 33.333 6.60 0.00 33.17 2.32
2254 2862 6.039717 ACTTGTTGTAACATGCTTGAGACATT 59.960 34.615 6.60 0.00 38.95 2.71
2255 2863 5.532406 ACTTGTTGTAACATGCTTGAGACAT 59.468 36.000 6.60 0.00 38.95 3.06
2256 2864 4.881273 ACTTGTTGTAACATGCTTGAGACA 59.119 37.500 6.60 6.88 38.95 3.41
2257 2865 5.424121 ACTTGTTGTAACATGCTTGAGAC 57.576 39.130 6.60 4.42 38.95 3.36
2258 2866 6.288294 AGTACTTGTTGTAACATGCTTGAGA 58.712 36.000 6.60 0.00 38.95 3.27
2259 2867 6.545504 AGTACTTGTTGTAACATGCTTGAG 57.454 37.500 6.60 1.67 38.95 3.02
2260 2868 8.615878 ATTAGTACTTGTTGTAACATGCTTGA 57.384 30.769 0.00 0.00 38.95 3.02
2261 2869 9.677567 AAATTAGTACTTGTTGTAACATGCTTG 57.322 29.630 0.00 0.00 38.95 4.01
2263 2871 9.893305 GAAAATTAGTACTTGTTGTAACATGCT 57.107 29.630 0.00 3.32 38.95 3.79
2264 2872 9.893305 AGAAAATTAGTACTTGTTGTAACATGC 57.107 29.630 0.00 0.00 38.95 4.06
2275 2883 9.974980 GGGAGAGATAGAGAAAATTAGTACTTG 57.025 37.037 0.00 0.00 0.00 3.16
2276 2884 9.150028 GGGGAGAGATAGAGAAAATTAGTACTT 57.850 37.037 0.00 0.00 0.00 2.24
2277 2885 7.449086 CGGGGAGAGATAGAGAAAATTAGTACT 59.551 40.741 0.00 0.00 0.00 2.73
2278 2886 7.595604 CGGGGAGAGATAGAGAAAATTAGTAC 58.404 42.308 0.00 0.00 0.00 2.73
2279 2887 6.208994 GCGGGGAGAGATAGAGAAAATTAGTA 59.791 42.308 0.00 0.00 0.00 1.82
2280 2888 5.011227 GCGGGGAGAGATAGAGAAAATTAGT 59.989 44.000 0.00 0.00 0.00 2.24
2281 2889 5.011125 TGCGGGGAGAGATAGAGAAAATTAG 59.989 44.000 0.00 0.00 0.00 1.73
2282 2890 4.899457 TGCGGGGAGAGATAGAGAAAATTA 59.101 41.667 0.00 0.00 0.00 1.40
2283 2891 3.711704 TGCGGGGAGAGATAGAGAAAATT 59.288 43.478 0.00 0.00 0.00 1.82
2284 2892 3.309296 TGCGGGGAGAGATAGAGAAAAT 58.691 45.455 0.00 0.00 0.00 1.82
2285 2893 2.747177 TGCGGGGAGAGATAGAGAAAA 58.253 47.619 0.00 0.00 0.00 2.29
2286 2894 2.454336 TGCGGGGAGAGATAGAGAAA 57.546 50.000 0.00 0.00 0.00 2.52
2287 2895 2.520069 GATGCGGGGAGAGATAGAGAA 58.480 52.381 0.00 0.00 0.00 2.87
2288 2896 1.272203 GGATGCGGGGAGAGATAGAGA 60.272 57.143 0.00 0.00 0.00 3.10
2289 2897 1.181786 GGATGCGGGGAGAGATAGAG 58.818 60.000 0.00 0.00 0.00 2.43
2290 2898 0.251832 GGGATGCGGGGAGAGATAGA 60.252 60.000 0.00 0.00 0.00 1.98
2291 2899 0.542938 TGGGATGCGGGGAGAGATAG 60.543 60.000 0.00 0.00 0.00 2.08
2292 2900 0.832135 GTGGGATGCGGGGAGAGATA 60.832 60.000 0.00 0.00 0.00 1.98
2293 2901 2.143419 GTGGGATGCGGGGAGAGAT 61.143 63.158 0.00 0.00 0.00 2.75
2294 2902 2.764128 GTGGGATGCGGGGAGAGA 60.764 66.667 0.00 0.00 0.00 3.10
2295 2903 3.866582 GGTGGGATGCGGGGAGAG 61.867 72.222 0.00 0.00 0.00 3.20
2296 2904 3.943137 AAGGTGGGATGCGGGGAGA 62.943 63.158 0.00 0.00 0.00 3.71
2297 2905 2.893682 GAAAGGTGGGATGCGGGGAG 62.894 65.000 0.00 0.00 0.00 4.30
2298 2906 2.938798 AAAGGTGGGATGCGGGGA 60.939 61.111 0.00 0.00 0.00 4.81
2299 2907 2.440247 GAAAGGTGGGATGCGGGG 60.440 66.667 0.00 0.00 0.00 5.73
2300 2908 2.440247 GGAAAGGTGGGATGCGGG 60.440 66.667 0.00 0.00 0.00 6.13
2301 2909 1.076777 ATGGAAAGGTGGGATGCGG 60.077 57.895 0.00 0.00 0.00 5.69
2302 2910 1.439353 CGATGGAAAGGTGGGATGCG 61.439 60.000 0.00 0.00 0.00 4.73
2303 2911 0.107214 TCGATGGAAAGGTGGGATGC 60.107 55.000 0.00 0.00 0.00 3.91
2304 2912 1.668419 GTCGATGGAAAGGTGGGATG 58.332 55.000 0.00 0.00 0.00 3.51
2305 2913 0.546598 GGTCGATGGAAAGGTGGGAT 59.453 55.000 0.00 0.00 0.00 3.85
2306 2914 0.838554 TGGTCGATGGAAAGGTGGGA 60.839 55.000 0.00 0.00 0.00 4.37
2307 2915 0.676782 GTGGTCGATGGAAAGGTGGG 60.677 60.000 0.00 0.00 0.00 4.61
2308 2916 0.324943 AGTGGTCGATGGAAAGGTGG 59.675 55.000 0.00 0.00 0.00 4.61
2309 2917 1.270839 ACAGTGGTCGATGGAAAGGTG 60.271 52.381 0.00 0.00 0.00 4.00
2310 2918 1.056660 ACAGTGGTCGATGGAAAGGT 58.943 50.000 0.00 0.00 0.00 3.50
2311 2919 1.001974 TCACAGTGGTCGATGGAAAGG 59.998 52.381 0.00 0.00 0.00 3.11
2312 2920 2.455674 TCACAGTGGTCGATGGAAAG 57.544 50.000 0.00 0.00 0.00 2.62
2313 2921 3.417069 AATCACAGTGGTCGATGGAAA 57.583 42.857 0.00 0.00 0.00 3.13
2314 2922 3.417069 AAATCACAGTGGTCGATGGAA 57.583 42.857 0.00 0.00 0.00 3.53
2315 2923 3.244387 TGAAAATCACAGTGGTCGATGGA 60.244 43.478 0.00 0.00 0.00 3.41
2316 2924 3.073678 TGAAAATCACAGTGGTCGATGG 58.926 45.455 0.00 0.00 0.00 3.51
2317 2925 4.715896 CTTGAAAATCACAGTGGTCGATG 58.284 43.478 0.00 0.00 0.00 3.84
2318 2926 3.189287 GCTTGAAAATCACAGTGGTCGAT 59.811 43.478 0.00 0.00 0.00 3.59
2319 2927 2.548057 GCTTGAAAATCACAGTGGTCGA 59.452 45.455 0.00 0.00 0.00 4.20
2320 2928 2.290367 TGCTTGAAAATCACAGTGGTCG 59.710 45.455 0.00 0.00 0.00 4.79
2321 2929 3.304928 CCTGCTTGAAAATCACAGTGGTC 60.305 47.826 0.00 0.00 0.00 4.02
2322 2930 2.624838 CCTGCTTGAAAATCACAGTGGT 59.375 45.455 0.00 0.00 0.00 4.16
2323 2931 2.608752 GCCTGCTTGAAAATCACAGTGG 60.609 50.000 0.00 0.00 0.00 4.00
2324 2932 2.295349 AGCCTGCTTGAAAATCACAGTG 59.705 45.455 0.00 0.00 0.00 3.66
2325 2933 2.590821 AGCCTGCTTGAAAATCACAGT 58.409 42.857 0.00 0.00 0.00 3.55
2326 2934 3.655276 AAGCCTGCTTGAAAATCACAG 57.345 42.857 3.09 0.00 34.60 3.66
2327 2935 5.528043 TTTAAGCCTGCTTGAAAATCACA 57.472 34.783 14.42 0.00 37.47 3.58
2328 2936 7.425577 AAATTTAAGCCTGCTTGAAAATCAC 57.574 32.000 14.42 0.00 35.65 3.06
2329 2937 7.714377 TCAAAATTTAAGCCTGCTTGAAAATCA 59.286 29.630 14.42 0.00 35.65 2.57
2330 2938 8.086851 TCAAAATTTAAGCCTGCTTGAAAATC 57.913 30.769 14.42 0.00 35.65 2.17
2331 2939 8.449251 TTCAAAATTTAAGCCTGCTTGAAAAT 57.551 26.923 14.42 10.05 35.65 1.82
2332 2940 7.768120 TCTTCAAAATTTAAGCCTGCTTGAAAA 59.232 29.630 14.42 8.24 35.65 2.29
2333 2941 7.271511 TCTTCAAAATTTAAGCCTGCTTGAAA 58.728 30.769 14.42 10.60 35.65 2.69
2334 2942 6.815089 TCTTCAAAATTTAAGCCTGCTTGAA 58.185 32.000 14.42 12.56 36.28 2.69
2335 2943 6.403866 TCTTCAAAATTTAAGCCTGCTTGA 57.596 33.333 14.42 3.32 37.47 3.02
2336 2944 6.869913 TGATCTTCAAAATTTAAGCCTGCTTG 59.130 34.615 14.42 0.00 37.47 4.01
2337 2945 6.996509 TGATCTTCAAAATTTAAGCCTGCTT 58.003 32.000 9.63 9.63 39.83 3.91
2338 2946 6.594788 TGATCTTCAAAATTTAAGCCTGCT 57.405 33.333 0.00 0.00 0.00 4.24
2339 2947 7.656707 TTTGATCTTCAAAATTTAAGCCTGC 57.343 32.000 0.37 0.00 42.72 4.85
2352 2960 7.964559 CGTTAGATGCTTCAATTTGATCTTCAA 59.035 33.333 0.00 0.00 34.03 2.69
2353 2961 7.334171 TCGTTAGATGCTTCAATTTGATCTTCA 59.666 33.333 0.00 0.00 0.00 3.02
2354 2962 7.688372 TCGTTAGATGCTTCAATTTGATCTTC 58.312 34.615 0.00 4.06 0.00 2.87
2355 2963 7.615582 TCGTTAGATGCTTCAATTTGATCTT 57.384 32.000 0.00 0.00 0.00 2.40
2356 2964 7.550551 TCTTCGTTAGATGCTTCAATTTGATCT 59.449 33.333 0.00 3.02 0.00 2.75
2357 2965 7.688372 TCTTCGTTAGATGCTTCAATTTGATC 58.312 34.615 0.00 0.00 0.00 2.92
2358 2966 7.550551 TCTCTTCGTTAGATGCTTCAATTTGAT 59.449 33.333 0.00 0.00 30.92 2.57
2359 2967 6.873605 TCTCTTCGTTAGATGCTTCAATTTGA 59.126 34.615 2.07 0.00 30.92 2.69
2360 2968 7.065216 TCTCTTCGTTAGATGCTTCAATTTG 57.935 36.000 2.07 0.00 30.92 2.32
2361 2969 7.625185 GCTTCTCTTCGTTAGATGCTTCAATTT 60.625 37.037 2.07 0.00 39.68 1.82
2362 2970 6.183360 GCTTCTCTTCGTTAGATGCTTCAATT 60.183 38.462 2.07 0.00 39.68 2.32
2363 2971 5.293079 GCTTCTCTTCGTTAGATGCTTCAAT 59.707 40.000 2.07 0.00 39.68 2.57
2364 2972 4.627467 GCTTCTCTTCGTTAGATGCTTCAA 59.373 41.667 2.07 0.00 39.68 2.69
2365 2973 4.177026 GCTTCTCTTCGTTAGATGCTTCA 58.823 43.478 2.07 0.00 39.68 3.02
2366 2974 3.241784 CGCTTCTCTTCGTTAGATGCTTC 59.758 47.826 14.91 0.00 40.28 3.86
2367 2975 3.119459 TCGCTTCTCTTCGTTAGATGCTT 60.119 43.478 14.91 0.00 40.28 3.91
2368 2976 2.423892 TCGCTTCTCTTCGTTAGATGCT 59.576 45.455 14.91 0.00 40.28 3.79
2369 2977 2.798680 TCGCTTCTCTTCGTTAGATGC 58.201 47.619 10.18 10.18 39.50 3.91
2370 2978 5.037385 TCATTCGCTTCTCTTCGTTAGATG 58.963 41.667 0.00 0.00 30.92 2.90
2371 2979 5.250235 TCATTCGCTTCTCTTCGTTAGAT 57.750 39.130 0.00 0.00 30.92 1.98
2372 2980 4.696899 TCATTCGCTTCTCTTCGTTAGA 57.303 40.909 0.00 0.00 0.00 2.10
2373 2981 6.858478 TCATATCATTCGCTTCTCTTCGTTAG 59.142 38.462 0.00 0.00 0.00 2.34
2374 2982 6.735130 TCATATCATTCGCTTCTCTTCGTTA 58.265 36.000 0.00 0.00 0.00 3.18
2375 2983 5.592054 TCATATCATTCGCTTCTCTTCGTT 58.408 37.500 0.00 0.00 0.00 3.85
2376 2984 5.188327 TCATATCATTCGCTTCTCTTCGT 57.812 39.130 0.00 0.00 0.00 3.85
2377 2985 5.444350 GCATCATATCATTCGCTTCTCTTCG 60.444 44.000 0.00 0.00 0.00 3.79
2378 2986 5.407691 TGCATCATATCATTCGCTTCTCTTC 59.592 40.000 0.00 0.00 0.00 2.87
2379 2987 5.303165 TGCATCATATCATTCGCTTCTCTT 58.697 37.500 0.00 0.00 0.00 2.85
2380 2988 4.891260 TGCATCATATCATTCGCTTCTCT 58.109 39.130 0.00 0.00 0.00 3.10
2381 2989 5.407691 TCTTGCATCATATCATTCGCTTCTC 59.592 40.000 0.00 0.00 0.00 2.87
2382 2990 5.303165 TCTTGCATCATATCATTCGCTTCT 58.697 37.500 0.00 0.00 0.00 2.85
2383 2991 5.178996 ACTCTTGCATCATATCATTCGCTTC 59.821 40.000 0.00 0.00 0.00 3.86
2384 2992 5.061853 ACTCTTGCATCATATCATTCGCTT 58.938 37.500 0.00 0.00 0.00 4.68
2385 2993 4.639334 ACTCTTGCATCATATCATTCGCT 58.361 39.130 0.00 0.00 0.00 4.93
2386 2994 5.354054 AACTCTTGCATCATATCATTCGC 57.646 39.130 0.00 0.00 0.00 4.70
2387 2995 8.476657 AGATAACTCTTGCATCATATCATTCG 57.523 34.615 0.00 0.00 0.00 3.34
2433 3041 9.750125 GAAAACTAGAGGTTCATCAACAAAATT 57.250 29.630 0.00 0.00 37.12 1.82
2434 3042 9.136323 AGAAAACTAGAGGTTCATCAACAAAAT 57.864 29.630 0.00 0.00 37.12 1.82
2435 3043 8.519799 AGAAAACTAGAGGTTCATCAACAAAA 57.480 30.769 0.00 0.00 37.12 2.44
2436 3044 8.519799 AAGAAAACTAGAGGTTCATCAACAAA 57.480 30.769 0.00 0.00 37.12 2.83
2437 3045 8.405531 CAAAGAAAACTAGAGGTTCATCAACAA 58.594 33.333 0.00 0.00 37.12 2.83
2438 3046 7.773224 TCAAAGAAAACTAGAGGTTCATCAACA 59.227 33.333 0.00 0.00 37.12 3.33
2439 3047 8.154649 TCAAAGAAAACTAGAGGTTCATCAAC 57.845 34.615 0.00 0.00 37.12 3.18
2440 3048 8.786898 CATCAAAGAAAACTAGAGGTTCATCAA 58.213 33.333 0.00 0.00 37.12 2.57
2441 3049 7.939039 ACATCAAAGAAAACTAGAGGTTCATCA 59.061 33.333 0.00 0.00 37.12 3.07
2442 3050 8.329203 ACATCAAAGAAAACTAGAGGTTCATC 57.671 34.615 0.00 0.00 37.12 2.92
2443 3051 9.793259 TTACATCAAAGAAAACTAGAGGTTCAT 57.207 29.630 0.00 0.00 37.12 2.57
2444 3052 9.793259 ATTACATCAAAGAAAACTAGAGGTTCA 57.207 29.630 0.00 0.00 37.12 3.18
2447 3055 9.442047 CAGATTACATCAAAGAAAACTAGAGGT 57.558 33.333 0.00 0.00 0.00 3.85
2448 3056 9.658799 TCAGATTACATCAAAGAAAACTAGAGG 57.341 33.333 0.00 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.