Multiple sequence alignment - TraesCS2B01G354100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G354100 chr2B 100.000 3469 0 0 1 3469 504830015 504826547 0.000000e+00 6407.0
1 TraesCS2B01G354100 chr2B 92.988 1369 40 25 855 2171 512342285 512343649 0.000000e+00 1945.0
2 TraesCS2B01G354100 chr2B 94.953 1169 54 5 2276 3441 521841827 521840661 0.000000e+00 1827.0
3 TraesCS2B01G354100 chr2B 94.521 1168 59 5 2277 3441 520938729 520939894 0.000000e+00 1797.0
4 TraesCS2B01G354100 chr2B 94.418 627 33 2 1 625 720632155 720631529 0.000000e+00 963.0
5 TraesCS2B01G354100 chr2B 91.304 161 10 3 2117 2274 512343710 512343869 2.100000e-52 217.0
6 TraesCS2B01G354100 chr2B 96.078 51 2 0 802 852 512342199 512342249 2.220000e-12 84.2
7 TraesCS2B01G354100 chr2A 93.801 1484 53 10 777 2229 559620607 559622082 0.000000e+00 2194.0
8 TraesCS2B01G354100 chr2A 92.500 160 11 1 630 788 15834814 15834973 9.690000e-56 228.0
9 TraesCS2B01G354100 chr2D 92.718 1538 54 15 777 2264 427958641 427957112 0.000000e+00 2167.0
10 TraesCS2B01G354100 chr2D 94.714 1173 47 12 2277 3441 488465079 488466244 0.000000e+00 1808.0
11 TraesCS2B01G354100 chr7B 94.791 1171 55 5 2275 3441 363281639 363280471 0.000000e+00 1820.0
12 TraesCS2B01G354100 chr7B 94.268 628 30 5 1 625 747248461 747247837 0.000000e+00 955.0
13 TraesCS2B01G354100 chr7B 94.099 627 34 3 1 625 147158005 147157380 0.000000e+00 950.0
14 TraesCS2B01G354100 chr7B 77.398 615 60 33 1253 1851 614282862 614282311 3.390000e-75 292.0
15 TraesCS2B01G354100 chr7B 85.020 247 17 5 1893 2139 614282312 614282086 2.080000e-57 233.0
16 TraesCS2B01G354100 chr7B 84.211 57 6 2 3415 3469 709229291 709229346 6.000000e-03 52.8
17 TraesCS2B01G354100 chr3B 94.800 1173 51 7 2275 3441 11603759 11604927 0.000000e+00 1820.0
18 TraesCS2B01G354100 chr3B 94.089 626 32 4 1 623 803434849 803435472 0.000000e+00 946.0
19 TraesCS2B01G354100 chr3B 97.297 37 0 1 3433 3469 81942161 81942126 1.040000e-05 62.1
20 TraesCS2B01G354100 chr4B 94.615 1170 55 7 2277 3441 72957979 72956813 0.000000e+00 1805.0
21 TraesCS2B01G354100 chr4B 90.854 164 14 1 623 786 348222740 348222902 5.830000e-53 219.0
22 TraesCS2B01G354100 chr4B 93.023 43 0 3 3429 3469 553431159 553431118 3.740000e-05 60.2
23 TraesCS2B01G354100 chr4B 94.872 39 1 1 3431 3469 590040542 590040505 3.740000e-05 60.2
24 TraesCS2B01G354100 chr1D 94.549 1174 49 12 2276 3441 45273487 45272321 0.000000e+00 1799.0
25 TraesCS2B01G354100 chr3D 94.463 1174 52 9 2276 3441 557712220 557713388 0.000000e+00 1796.0
26 TraesCS2B01G354100 chr7D 94.459 1173 51 11 2276 3441 571886556 571887721 0.000000e+00 1794.0
27 TraesCS2B01G354100 chr7D 88.819 474 35 10 1311 1769 564577658 564578128 1.810000e-157 566.0
28 TraesCS2B01G354100 chr7D 85.246 366 28 9 1767 2125 563684408 563684754 1.530000e-93 353.0
29 TraesCS2B01G354100 chr3A 94.728 626 28 5 1 623 113711610 113710987 0.000000e+00 968.0
30 TraesCS2B01G354100 chr6B 94.418 627 32 3 1 625 67944653 67945278 0.000000e+00 961.0
31 TraesCS2B01G354100 chr6B 93.960 149 9 0 630 778 634310189 634310041 3.480000e-55 226.0
32 TraesCS2B01G354100 chr6B 92.357 157 12 0 630 786 315648811 315648967 1.250000e-54 224.0
33 TraesCS2B01G354100 chr6B 94.872 39 0 2 3431 3469 443602947 443602911 3.740000e-05 60.2
34 TraesCS2B01G354100 chr6B 94.872 39 0 2 3431 3469 484762016 484761980 3.740000e-05 60.2
35 TraesCS2B01G354100 chr1B 94.277 629 28 7 1 625 614967178 614966554 0.000000e+00 955.0
36 TraesCS2B01G354100 chr1B 91.772 158 11 2 623 778 581116565 581116722 5.830000e-53 219.0
37 TraesCS2B01G354100 chr1B 92.857 42 3 0 3428 3469 446955587 446955628 1.040000e-05 62.1
38 TraesCS2B01G354100 chr1B 89.362 47 2 3 3424 3469 480748036 480747992 4.840000e-04 56.5
39 TraesCS2B01G354100 chr5B 94.099 627 35 2 1 625 671321909 671322535 0.000000e+00 952.0
40 TraesCS2B01G354100 chr5B 94.108 628 32 5 1 625 189149675 189150300 0.000000e+00 950.0
41 TraesCS2B01G354100 chr5B 93.082 159 10 1 630 787 360408755 360408597 7.490000e-57 231.0
42 TraesCS2B01G354100 chr6A 79.393 626 97 19 1148 1746 358573553 358572933 2.490000e-111 412.0
43 TraesCS2B01G354100 chr6D 82.558 344 45 7 1416 1746 263044214 263043873 4.380000e-74 289.0
44 TraesCS2B01G354100 chr5A 91.463 164 14 0 626 789 563478600 563478437 3.480000e-55 226.0
45 TraesCS2B01G354100 chr4A 93.289 149 10 0 630 778 5408539 5408687 1.620000e-53 220.0
46 TraesCS2B01G354100 chr4A 95.000 40 0 2 3430 3469 383158238 383158201 1.040000e-05 62.1
47 TraesCS2B01G354100 chr1A 91.824 159 12 1 630 787 571431684 571431842 1.620000e-53 220.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G354100 chr2B 504826547 504830015 3468 True 6407.000000 6407 100.000000 1 3469 1 chr2B.!!$R1 3468
1 TraesCS2B01G354100 chr2B 521840661 521841827 1166 True 1827.000000 1827 94.953000 2276 3441 1 chr2B.!!$R2 1165
2 TraesCS2B01G354100 chr2B 520938729 520939894 1165 False 1797.000000 1797 94.521000 2277 3441 1 chr2B.!!$F1 1164
3 TraesCS2B01G354100 chr2B 720631529 720632155 626 True 963.000000 963 94.418000 1 625 1 chr2B.!!$R3 624
4 TraesCS2B01G354100 chr2B 512342199 512343869 1670 False 748.733333 1945 93.456667 802 2274 3 chr2B.!!$F2 1472
5 TraesCS2B01G354100 chr2A 559620607 559622082 1475 False 2194.000000 2194 93.801000 777 2229 1 chr2A.!!$F2 1452
6 TraesCS2B01G354100 chr2D 427957112 427958641 1529 True 2167.000000 2167 92.718000 777 2264 1 chr2D.!!$R1 1487
7 TraesCS2B01G354100 chr2D 488465079 488466244 1165 False 1808.000000 1808 94.714000 2277 3441 1 chr2D.!!$F1 1164
8 TraesCS2B01G354100 chr7B 363280471 363281639 1168 True 1820.000000 1820 94.791000 2275 3441 1 chr7B.!!$R2 1166
9 TraesCS2B01G354100 chr7B 747247837 747248461 624 True 955.000000 955 94.268000 1 625 1 chr7B.!!$R3 624
10 TraesCS2B01G354100 chr7B 147157380 147158005 625 True 950.000000 950 94.099000 1 625 1 chr7B.!!$R1 624
11 TraesCS2B01G354100 chr7B 614282086 614282862 776 True 262.500000 292 81.209000 1253 2139 2 chr7B.!!$R4 886
12 TraesCS2B01G354100 chr3B 11603759 11604927 1168 False 1820.000000 1820 94.800000 2275 3441 1 chr3B.!!$F1 1166
13 TraesCS2B01G354100 chr3B 803434849 803435472 623 False 946.000000 946 94.089000 1 623 1 chr3B.!!$F2 622
14 TraesCS2B01G354100 chr4B 72956813 72957979 1166 True 1805.000000 1805 94.615000 2277 3441 1 chr4B.!!$R1 1164
15 TraesCS2B01G354100 chr1D 45272321 45273487 1166 True 1799.000000 1799 94.549000 2276 3441 1 chr1D.!!$R1 1165
16 TraesCS2B01G354100 chr3D 557712220 557713388 1168 False 1796.000000 1796 94.463000 2276 3441 1 chr3D.!!$F1 1165
17 TraesCS2B01G354100 chr7D 571886556 571887721 1165 False 1794.000000 1794 94.459000 2276 3441 1 chr7D.!!$F3 1165
18 TraesCS2B01G354100 chr3A 113710987 113711610 623 True 968.000000 968 94.728000 1 623 1 chr3A.!!$R1 622
19 TraesCS2B01G354100 chr6B 67944653 67945278 625 False 961.000000 961 94.418000 1 625 1 chr6B.!!$F1 624
20 TraesCS2B01G354100 chr1B 614966554 614967178 624 True 955.000000 955 94.277000 1 625 1 chr1B.!!$R2 624
21 TraesCS2B01G354100 chr5B 671321909 671322535 626 False 952.000000 952 94.099000 1 625 1 chr5B.!!$F2 624
22 TraesCS2B01G354100 chr5B 189149675 189150300 625 False 950.000000 950 94.108000 1 625 1 chr5B.!!$F1 624
23 TraesCS2B01G354100 chr6A 358572933 358573553 620 True 412.000000 412 79.393000 1148 1746 1 chr6A.!!$R1 598

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
739 748 0.037790 TGATGAATGCGTGTGGTCGA 60.038 50.0 0.00 0.0 0.00 4.20 F
764 773 0.105778 TCAATGCTCACACGTGTGGA 59.894 50.0 39.88 27.7 45.65 4.02 F
765 774 0.235665 CAATGCTCACACGTGTGGAC 59.764 55.0 39.88 32.1 45.65 4.02 F
833 842 1.078759 GTCGGCTGATTGTCTCACCG 61.079 60.0 0.00 0.0 43.72 4.94 F
2090 2219 1.100510 TGGCGTGACGTAGCTATCTT 58.899 50.0 6.91 0.0 0.00 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1814 1934 0.031585 GAAACAAAAGACGGGGTGCC 59.968 55.000 0.00 0.0 0.00 5.01 R
1827 1947 0.749818 TTGCTCCACGCCTGAAACAA 60.750 50.000 0.00 0.0 38.05 2.83 R
2106 2239 1.067565 TGCACTCTCGAGCCTAAACAG 60.068 52.381 7.81 0.0 0.00 3.16 R
2410 2666 1.668419 GAGCCCATCATTGTAACGCT 58.332 50.000 0.00 0.0 0.00 5.07 R
3089 3355 1.074405 ACATTCAGCAGACATGTGGGT 59.926 47.619 1.15 0.0 29.74 4.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
237 241 6.014840 ACATGTTCGGGTAAAAGAGAGAGTTA 60.015 38.462 0.00 0.00 0.00 2.24
349 354 4.283363 ACCATGCAAAACATATGGCAAA 57.717 36.364 7.80 0.00 44.06 3.68
365 370 2.097466 GGCAAATGACATGTTCGGGTAG 59.903 50.000 0.00 0.00 0.00 3.18
486 493 1.003839 GGACGTGTGGGCAAGATGA 60.004 57.895 0.00 0.00 0.00 2.92
506 513 3.714487 AAACGCCCACACACCAGCT 62.714 57.895 0.00 0.00 0.00 4.24
520 527 0.038251 CCAGCTCTTGTGCGTGACTA 60.038 55.000 0.00 0.00 38.13 2.59
525 532 3.815401 AGCTCTTGTGCGTGACTAAAAAT 59.185 39.130 0.00 0.00 38.13 1.82
590 599 5.007034 TCCATGTGATAAAACGGATGTTGT 58.993 37.500 0.00 0.00 38.62 3.32
594 603 2.173964 GATAAAACGGATGTTGTGCGC 58.826 47.619 0.00 0.00 46.57 6.09
608 617 1.078709 GTGCGCACTATGTCACACAT 58.921 50.000 32.55 0.00 42.35 3.21
632 641 4.041617 CACGCCTTGTGTGCACTA 57.958 55.556 19.41 4.18 43.88 2.74
633 642 2.543578 CACGCCTTGTGTGCACTAT 58.456 52.632 19.41 0.00 43.88 2.12
634 643 0.166597 CACGCCTTGTGTGCACTATG 59.833 55.000 19.41 9.15 43.88 2.23
635 644 0.250295 ACGCCTTGTGTGCACTATGT 60.250 50.000 19.41 4.16 0.00 2.29
636 645 0.443869 CGCCTTGTGTGCACTATGTC 59.556 55.000 19.41 4.24 0.00 3.06
637 646 1.522668 GCCTTGTGTGCACTATGTCA 58.477 50.000 19.41 6.76 0.00 3.58
638 647 1.197721 GCCTTGTGTGCACTATGTCAC 59.802 52.381 19.41 7.18 0.00 3.67
639 648 2.493035 CCTTGTGTGCACTATGTCACA 58.507 47.619 19.41 9.97 40.50 3.58
644 653 3.399440 TGTGCACTATGTCACACATCA 57.601 42.857 19.41 0.00 39.88 3.07
645 654 3.066380 TGTGCACTATGTCACACATCAC 58.934 45.455 19.41 0.00 39.88 3.06
646 655 3.066380 GTGCACTATGTCACACATCACA 58.934 45.455 10.32 0.00 39.88 3.58
647 656 3.066380 TGCACTATGTCACACATCACAC 58.934 45.455 0.00 0.00 39.88 3.82
648 657 3.066380 GCACTATGTCACACATCACACA 58.934 45.455 0.00 0.00 39.88 3.72
649 658 3.120546 GCACTATGTCACACATCACACAC 60.121 47.826 0.00 0.00 39.88 3.82
650 659 4.057432 CACTATGTCACACATCACACACA 58.943 43.478 0.00 0.00 39.88 3.72
651 660 4.058124 ACTATGTCACACATCACACACAC 58.942 43.478 0.00 0.00 39.88 3.82
652 661 1.285578 TGTCACACATCACACACACG 58.714 50.000 0.00 0.00 0.00 4.49
653 662 0.042188 GTCACACATCACACACACGC 60.042 55.000 0.00 0.00 0.00 5.34
654 663 1.157257 TCACACATCACACACACGCC 61.157 55.000 0.00 0.00 0.00 5.68
655 664 1.146041 ACACATCACACACACGCCT 59.854 52.632 0.00 0.00 0.00 5.52
656 665 0.463654 ACACATCACACACACGCCTT 60.464 50.000 0.00 0.00 0.00 4.35
657 666 0.041047 CACATCACACACACGCCTTG 60.041 55.000 0.00 0.00 0.00 3.61
658 667 0.463654 ACATCACACACACGCCTTGT 60.464 50.000 0.00 0.00 39.97 3.16
659 668 0.235665 CATCACACACACGCCTTGTC 59.764 55.000 0.00 0.00 35.67 3.18
660 669 0.884704 ATCACACACACGCCTTGTCC 60.885 55.000 0.00 0.00 35.67 4.02
661 670 1.523711 CACACACACGCCTTGTCCT 60.524 57.895 0.00 0.00 35.67 3.85
662 671 0.249699 CACACACACGCCTTGTCCTA 60.250 55.000 0.00 0.00 35.67 2.94
663 672 0.249741 ACACACACGCCTTGTCCTAC 60.250 55.000 0.00 0.00 35.67 3.18
664 673 1.006571 ACACACGCCTTGTCCTACG 60.007 57.895 0.00 0.00 35.67 3.51
665 674 1.006571 CACACGCCTTGTCCTACGT 60.007 57.895 0.00 0.00 35.67 3.57
667 676 2.654877 ACGCCTTGTCCTACGTGG 59.345 61.111 0.00 0.00 37.37 4.94
668 677 2.813908 CGCCTTGTCCTACGTGGC 60.814 66.667 0.00 0.00 36.30 5.01
669 678 2.345991 GCCTTGTCCTACGTGGCA 59.654 61.111 0.00 0.00 38.41 4.92
670 679 1.078426 GCCTTGTCCTACGTGGCAT 60.078 57.895 0.00 0.00 38.41 4.40
671 680 0.177141 GCCTTGTCCTACGTGGCATA 59.823 55.000 0.00 0.00 38.41 3.14
672 681 1.406341 GCCTTGTCCTACGTGGCATAA 60.406 52.381 0.00 0.00 38.41 1.90
673 682 2.937873 GCCTTGTCCTACGTGGCATAAA 60.938 50.000 0.00 0.00 38.41 1.40
674 683 3.340034 CCTTGTCCTACGTGGCATAAAA 58.660 45.455 0.00 0.00 35.26 1.52
675 684 3.754323 CCTTGTCCTACGTGGCATAAAAA 59.246 43.478 0.00 0.00 35.26 1.94
696 705 7.572523 AAAAATCAGTCAGATTGTGTCAAGA 57.427 32.000 0.00 0.00 46.09 3.02
697 706 7.756395 AAAATCAGTCAGATTGTGTCAAGAT 57.244 32.000 0.00 0.00 46.09 2.40
698 707 7.756395 AAATCAGTCAGATTGTGTCAAGATT 57.244 32.000 0.00 0.00 46.09 2.40
699 708 6.981762 ATCAGTCAGATTGTGTCAAGATTC 57.018 37.500 0.00 0.00 31.20 2.52
700 709 4.925646 TCAGTCAGATTGTGTCAAGATTCG 59.074 41.667 0.00 0.00 0.00 3.34
701 710 4.687948 CAGTCAGATTGTGTCAAGATTCGT 59.312 41.667 0.00 0.00 0.00 3.85
702 711 4.687948 AGTCAGATTGTGTCAAGATTCGTG 59.312 41.667 0.00 0.00 0.00 4.35
703 712 3.433274 TCAGATTGTGTCAAGATTCGTGC 59.567 43.478 0.00 0.00 0.00 5.34
704 713 3.187022 CAGATTGTGTCAAGATTCGTGCA 59.813 43.478 0.00 0.00 0.00 4.57
705 714 4.005650 AGATTGTGTCAAGATTCGTGCAT 58.994 39.130 0.00 0.00 0.00 3.96
706 715 5.063817 CAGATTGTGTCAAGATTCGTGCATA 59.936 40.000 0.00 0.00 0.00 3.14
707 716 5.819379 AGATTGTGTCAAGATTCGTGCATAT 59.181 36.000 0.00 0.00 0.00 1.78
708 717 6.986231 AGATTGTGTCAAGATTCGTGCATATA 59.014 34.615 0.00 0.00 0.00 0.86
709 718 6.588348 TTGTGTCAAGATTCGTGCATATAG 57.412 37.500 0.00 0.00 0.00 1.31
710 719 5.660460 TGTGTCAAGATTCGTGCATATAGT 58.340 37.500 0.00 0.00 0.00 2.12
711 720 6.801575 TGTGTCAAGATTCGTGCATATAGTA 58.198 36.000 0.00 0.00 0.00 1.82
712 721 6.695713 TGTGTCAAGATTCGTGCATATAGTAC 59.304 38.462 0.00 0.00 0.00 2.73
713 722 6.918569 GTGTCAAGATTCGTGCATATAGTACT 59.081 38.462 0.00 0.00 0.00 2.73
714 723 6.918022 TGTCAAGATTCGTGCATATAGTACTG 59.082 38.462 5.39 0.00 0.00 2.74
715 724 6.363626 GTCAAGATTCGTGCATATAGTACTGG 59.636 42.308 5.39 0.00 0.00 4.00
716 725 6.264518 TCAAGATTCGTGCATATAGTACTGGA 59.735 38.462 5.39 0.00 0.00 3.86
717 726 6.015027 AGATTCGTGCATATAGTACTGGAC 57.985 41.667 5.39 0.00 0.00 4.02
722 731 5.372547 GTGCATATAGTACTGGACGATGA 57.627 43.478 5.39 0.00 0.00 2.92
723 732 5.955488 GTGCATATAGTACTGGACGATGAT 58.045 41.667 5.39 0.00 0.00 2.45
724 733 5.802451 GTGCATATAGTACTGGACGATGATG 59.198 44.000 5.39 0.00 0.00 3.07
725 734 5.710099 TGCATATAGTACTGGACGATGATGA 59.290 40.000 5.39 0.00 0.00 2.92
726 735 6.208599 TGCATATAGTACTGGACGATGATGAA 59.791 38.462 5.39 0.00 0.00 2.57
727 736 7.093771 TGCATATAGTACTGGACGATGATGAAT 60.094 37.037 5.39 0.00 0.00 2.57
728 737 7.221645 GCATATAGTACTGGACGATGATGAATG 59.778 40.741 5.39 0.00 0.00 2.67
729 738 3.722147 AGTACTGGACGATGATGAATGC 58.278 45.455 0.00 0.00 0.00 3.56
730 739 1.575244 ACTGGACGATGATGAATGCG 58.425 50.000 0.00 0.00 0.00 4.73
731 740 1.134699 ACTGGACGATGATGAATGCGT 60.135 47.619 0.00 0.00 39.99 5.24
732 741 1.259770 CTGGACGATGATGAATGCGTG 59.740 52.381 0.00 0.00 37.07 5.34
733 742 1.290203 GGACGATGATGAATGCGTGT 58.710 50.000 0.00 0.00 37.07 4.49
734 743 1.004610 GGACGATGATGAATGCGTGTG 60.005 52.381 0.00 0.00 37.07 3.82
735 744 1.004610 GACGATGATGAATGCGTGTGG 60.005 52.381 0.00 0.00 37.07 4.17
736 745 1.009078 CGATGATGAATGCGTGTGGT 58.991 50.000 0.00 0.00 0.00 4.16
737 746 1.004610 CGATGATGAATGCGTGTGGTC 60.005 52.381 0.00 0.00 0.00 4.02
738 747 1.004610 GATGATGAATGCGTGTGGTCG 60.005 52.381 0.00 0.00 0.00 4.79
739 748 0.037790 TGATGAATGCGTGTGGTCGA 60.038 50.000 0.00 0.00 0.00 4.20
740 749 0.647410 GATGAATGCGTGTGGTCGAG 59.353 55.000 0.00 0.00 0.00 4.04
741 750 0.246360 ATGAATGCGTGTGGTCGAGA 59.754 50.000 0.00 0.00 0.00 4.04
742 751 0.246360 TGAATGCGTGTGGTCGAGAT 59.754 50.000 0.00 0.00 0.00 2.75
743 752 1.474879 TGAATGCGTGTGGTCGAGATA 59.525 47.619 0.00 0.00 0.00 1.98
744 753 2.120232 GAATGCGTGTGGTCGAGATAG 58.880 52.381 0.00 0.00 0.00 2.08
745 754 1.103803 ATGCGTGTGGTCGAGATAGT 58.896 50.000 0.00 0.00 0.00 2.12
746 755 0.450583 TGCGTGTGGTCGAGATAGTC 59.549 55.000 0.00 0.00 0.00 2.59
747 756 0.450583 GCGTGTGGTCGAGATAGTCA 59.549 55.000 0.00 0.00 0.00 3.41
748 757 1.135489 GCGTGTGGTCGAGATAGTCAA 60.135 52.381 0.00 0.00 0.00 3.18
749 758 2.479730 GCGTGTGGTCGAGATAGTCAAT 60.480 50.000 0.00 0.00 0.00 2.57
750 759 3.108881 CGTGTGGTCGAGATAGTCAATG 58.891 50.000 0.00 0.00 0.00 2.82
751 760 2.860735 GTGTGGTCGAGATAGTCAATGC 59.139 50.000 0.00 0.00 0.00 3.56
752 761 2.760650 TGTGGTCGAGATAGTCAATGCT 59.239 45.455 0.00 0.00 0.00 3.79
753 762 3.181486 TGTGGTCGAGATAGTCAATGCTC 60.181 47.826 0.00 0.00 0.00 4.26
754 763 3.023832 TGGTCGAGATAGTCAATGCTCA 58.976 45.455 0.00 0.00 0.00 4.26
755 764 3.181486 TGGTCGAGATAGTCAATGCTCAC 60.181 47.826 0.00 0.00 0.00 3.51
756 765 3.181486 GGTCGAGATAGTCAATGCTCACA 60.181 47.826 0.00 0.00 0.00 3.58
757 766 3.794028 GTCGAGATAGTCAATGCTCACAC 59.206 47.826 0.00 0.00 0.00 3.82
758 767 2.786027 CGAGATAGTCAATGCTCACACG 59.214 50.000 0.00 0.00 0.00 4.49
759 768 3.732169 CGAGATAGTCAATGCTCACACGT 60.732 47.826 0.00 0.00 0.00 4.49
760 769 3.515630 AGATAGTCAATGCTCACACGTG 58.484 45.455 15.48 15.48 0.00 4.49
761 770 2.812358 TAGTCAATGCTCACACGTGT 57.188 45.000 17.22 17.22 0.00 4.49
762 771 1.220529 AGTCAATGCTCACACGTGTG 58.779 50.000 37.04 37.04 46.91 3.82
763 772 0.235665 GTCAATGCTCACACGTGTGG 59.764 55.000 39.88 31.46 45.65 4.17
764 773 0.105778 TCAATGCTCACACGTGTGGA 59.894 50.000 39.88 27.70 45.65 4.02
765 774 0.235665 CAATGCTCACACGTGTGGAC 59.764 55.000 39.88 32.10 45.65 4.02
833 842 1.078759 GTCGGCTGATTGTCTCACCG 61.079 60.000 0.00 0.00 43.72 4.94
1772 1885 4.378356 CGATTCGTTTCAGCTGGAAATTCA 60.378 41.667 9.61 0.00 46.55 2.57
1795 1909 1.745768 CGTATTCGTTTCCGTCCGGC 61.746 60.000 0.00 0.00 35.01 6.13
1814 1934 3.707440 CGCTGAGCATCTGAGCAG 58.293 61.111 4.88 0.00 40.60 4.24
1827 1947 3.553095 GAGCAGGCACCCCGTCTTT 62.553 63.158 0.00 0.00 35.76 2.52
2090 2219 1.100510 TGGCGTGACGTAGCTATCTT 58.899 50.000 6.91 0.00 0.00 2.40
2092 2221 1.478137 GCGTGACGTAGCTATCTTGG 58.522 55.000 6.91 0.00 0.00 3.61
2093 2222 1.478137 CGTGACGTAGCTATCTTGGC 58.522 55.000 0.00 0.00 0.00 4.52
2162 2408 4.085733 TCAGAGAGAGCTAAGCTTCAGTT 58.914 43.478 0.00 0.00 39.88 3.16
2171 2417 6.541641 AGAGCTAAGCTTCAGTTGATTATTGG 59.458 38.462 0.00 0.00 39.88 3.16
2211 2460 4.536065 GCTGTGAATTGTCGTTTTCATCA 58.464 39.130 0.00 0.00 34.60 3.07
2213 2462 5.458452 GCTGTGAATTGTCGTTTTCATCAAA 59.542 36.000 0.00 0.00 34.60 2.69
2374 2629 4.208460 CGCGAAAGTAAAAGACACAGAGAA 59.792 41.667 0.00 0.00 0.00 2.87
2405 2661 9.561069 GAAGGAGACCAGCTTTATTAATCAATA 57.439 33.333 0.00 0.00 0.00 1.90
2600 2863 8.426489 GGTAATTATCCGTATATCCATGCCTTA 58.574 37.037 0.00 0.00 0.00 2.69
2642 2907 4.780554 GTGGGGAAAAATATGGGGAAAGAA 59.219 41.667 0.00 0.00 0.00 2.52
2645 2910 5.428457 GGGGAAAAATATGGGGAAAGAACAT 59.572 40.000 0.00 0.00 0.00 2.71
2715 2981 5.220854 CGTGTGAGAAACATCAGGAAAACTT 60.221 40.000 0.00 0.00 41.97 2.66
2717 2983 7.307989 CGTGTGAGAAACATCAGGAAAACTTAT 60.308 37.037 0.00 0.00 41.97 1.73
2744 3010 5.953571 AGGGAAAAAGAGTACAATCCACTT 58.046 37.500 0.00 0.00 0.00 3.16
2768 3034 5.407407 ACCATCAAGTTGAGTACTCGATT 57.593 39.130 15.96 9.18 35.54 3.34
3084 3350 2.317371 TGGTAGGGGTTTGTACGGTA 57.683 50.000 0.00 0.00 0.00 4.02
3089 3355 4.323409 GGTAGGGGTTTGTACGGTATTCAA 60.323 45.833 0.00 0.00 0.00 2.69
3161 3427 4.304110 TCTTTTGACGCTTCGAATAGTGT 58.696 39.130 9.88 6.70 41.33 3.55
3339 3605 9.732130 ATAGATAGGTCTTGATTCCTTTTATGC 57.268 33.333 0.00 0.00 35.87 3.14
3372 3638 1.992557 TCTTTGGTCCCTTGCAGGTAT 59.007 47.619 0.00 0.00 31.93 2.73
3441 3707 1.873591 CTGTACCTCGCAAGCAAACTT 59.126 47.619 0.00 0.00 36.19 2.66
3453 3719 4.863491 CAAGCAAACTTGTAAGTGCATCT 58.137 39.130 9.10 0.00 46.84 2.90
3454 3720 6.000891 CAAGCAAACTTGTAAGTGCATCTA 57.999 37.500 9.10 0.00 46.84 1.98
3455 3721 5.869753 AGCAAACTTGTAAGTGCATCTAG 57.130 39.130 9.10 0.00 39.66 2.43
3456 3722 5.308825 AGCAAACTTGTAAGTGCATCTAGT 58.691 37.500 9.10 0.00 39.66 2.57
3457 3723 5.180117 AGCAAACTTGTAAGTGCATCTAGTG 59.820 40.000 9.10 0.00 39.66 2.74
3458 3724 9.583756 AAGCAAACTTGTAAGTGCATCTAGTGC 62.584 40.741 9.52 9.52 44.01 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 4.156556 CACATGGCAATAGCTGTAGTTGTT 59.843 41.667 0.00 0.00 41.70 2.83
325 330 3.181492 TGCCATATGTTTTGCATGGTACG 60.181 43.478 1.24 0.00 41.15 3.67
486 493 2.044848 TGGTGTGTGGGCGTTTGT 60.045 55.556 0.00 0.00 0.00 2.83
506 513 5.743026 TCAATTTTTAGTCACGCACAAGA 57.257 34.783 0.00 0.00 0.00 3.02
520 527 5.358922 CAGTTCACCCACACATCAATTTTT 58.641 37.500 0.00 0.00 0.00 1.94
525 532 1.133823 AGCAGTTCACCCACACATCAA 60.134 47.619 0.00 0.00 0.00 2.57
590 599 1.337635 TGATGTGTGACATAGTGCGCA 60.338 47.619 5.66 5.66 39.27 6.09
594 603 4.057432 TGTGTGTGATGTGTGACATAGTG 58.943 43.478 0.00 0.00 39.27 2.74
625 634 3.066380 TGTGATGTGTGACATAGTGCAC 58.934 45.455 9.40 9.40 39.27 4.57
626 635 3.066380 GTGTGATGTGTGACATAGTGCA 58.934 45.455 0.00 0.00 39.27 4.57
627 636 3.066380 TGTGTGATGTGTGACATAGTGC 58.934 45.455 0.00 0.00 39.27 4.40
628 637 4.057432 TGTGTGTGATGTGTGACATAGTG 58.943 43.478 0.00 0.00 39.27 2.74
629 638 4.058124 GTGTGTGTGATGTGTGACATAGT 58.942 43.478 0.00 0.00 39.27 2.12
630 639 3.121778 CGTGTGTGTGATGTGTGACATAG 59.878 47.826 0.00 0.00 39.27 2.23
631 640 3.056304 CGTGTGTGTGATGTGTGACATA 58.944 45.455 0.00 0.00 39.27 2.29
632 641 1.866601 CGTGTGTGTGATGTGTGACAT 59.133 47.619 0.00 0.00 42.43 3.06
633 642 1.285578 CGTGTGTGTGATGTGTGACA 58.714 50.000 0.00 0.00 0.00 3.58
634 643 0.042188 GCGTGTGTGTGATGTGTGAC 60.042 55.000 0.00 0.00 0.00 3.67
635 644 1.157257 GGCGTGTGTGTGATGTGTGA 61.157 55.000 0.00 0.00 0.00 3.58
636 645 1.159713 AGGCGTGTGTGTGATGTGTG 61.160 55.000 0.00 0.00 0.00 3.82
637 646 0.463654 AAGGCGTGTGTGTGATGTGT 60.464 50.000 0.00 0.00 0.00 3.72
638 647 0.041047 CAAGGCGTGTGTGTGATGTG 60.041 55.000 0.00 0.00 0.00 3.21
639 648 0.463654 ACAAGGCGTGTGTGTGATGT 60.464 50.000 4.97 0.00 39.72 3.06
640 649 0.235665 GACAAGGCGTGTGTGTGATG 59.764 55.000 11.66 0.00 41.96 3.07
641 650 0.884704 GGACAAGGCGTGTGTGTGAT 60.885 55.000 11.66 0.00 41.96 3.06
642 651 1.522806 GGACAAGGCGTGTGTGTGA 60.523 57.895 11.66 0.00 41.96 3.58
643 652 0.249699 TAGGACAAGGCGTGTGTGTG 60.250 55.000 11.66 0.00 41.96 3.82
644 653 0.249741 GTAGGACAAGGCGTGTGTGT 60.250 55.000 11.66 0.00 41.96 3.72
645 654 1.282248 CGTAGGACAAGGCGTGTGTG 61.282 60.000 11.66 0.00 41.96 3.82
646 655 1.006571 CGTAGGACAAGGCGTGTGT 60.007 57.895 11.66 0.33 41.96 3.72
647 656 1.006571 ACGTAGGACAAGGCGTGTG 60.007 57.895 11.66 0.00 41.96 3.82
648 657 1.006571 CACGTAGGACAAGGCGTGT 60.007 57.895 5.57 5.57 46.30 4.49
649 658 3.856508 CACGTAGGACAAGGCGTG 58.143 61.111 0.00 0.00 46.28 5.34
650 659 2.654877 CCACGTAGGACAAGGCGT 59.345 61.111 0.00 0.00 41.22 5.68
651 660 2.813908 GCCACGTAGGACAAGGCG 60.814 66.667 8.04 0.00 41.22 5.52
652 661 0.177141 TATGCCACGTAGGACAAGGC 59.823 55.000 8.04 6.09 45.41 4.35
653 662 2.684001 TTATGCCACGTAGGACAAGG 57.316 50.000 8.04 0.00 41.22 3.61
672 681 7.572523 TCTTGACACAATCTGACTGATTTTT 57.427 32.000 4.93 0.00 43.00 1.94
673 682 7.756395 ATCTTGACACAATCTGACTGATTTT 57.244 32.000 4.93 0.00 43.00 1.82
674 683 7.360691 CGAATCTTGACACAATCTGACTGATTT 60.361 37.037 4.93 0.00 43.00 2.17
675 684 6.091849 CGAATCTTGACACAATCTGACTGATT 59.908 38.462 1.95 1.95 45.52 2.57
676 685 5.579904 CGAATCTTGACACAATCTGACTGAT 59.420 40.000 0.00 0.00 36.89 2.90
677 686 4.925646 CGAATCTTGACACAATCTGACTGA 59.074 41.667 0.00 0.00 0.00 3.41
678 687 4.687948 ACGAATCTTGACACAATCTGACTG 59.312 41.667 0.00 0.00 0.00 3.51
679 688 4.687948 CACGAATCTTGACACAATCTGACT 59.312 41.667 0.00 0.00 0.00 3.41
680 689 4.667668 GCACGAATCTTGACACAATCTGAC 60.668 45.833 0.00 0.00 0.00 3.51
681 690 3.433274 GCACGAATCTTGACACAATCTGA 59.567 43.478 0.00 0.00 0.00 3.27
682 691 3.187022 TGCACGAATCTTGACACAATCTG 59.813 43.478 0.00 0.00 0.00 2.90
683 692 3.402110 TGCACGAATCTTGACACAATCT 58.598 40.909 0.00 0.00 0.00 2.40
684 693 3.811722 TGCACGAATCTTGACACAATC 57.188 42.857 0.00 0.00 0.00 2.67
685 694 6.763135 ACTATATGCACGAATCTTGACACAAT 59.237 34.615 0.00 0.00 0.00 2.71
686 695 6.106003 ACTATATGCACGAATCTTGACACAA 58.894 36.000 0.00 0.00 0.00 3.33
687 696 5.660460 ACTATATGCACGAATCTTGACACA 58.340 37.500 0.00 0.00 0.00 3.72
688 697 6.918569 AGTACTATATGCACGAATCTTGACAC 59.081 38.462 0.00 0.00 0.00 3.67
689 698 6.918022 CAGTACTATATGCACGAATCTTGACA 59.082 38.462 0.00 0.00 0.00 3.58
690 699 6.363626 CCAGTACTATATGCACGAATCTTGAC 59.636 42.308 0.00 0.00 0.00 3.18
691 700 6.264518 TCCAGTACTATATGCACGAATCTTGA 59.735 38.462 0.00 0.00 0.00 3.02
692 701 6.363626 GTCCAGTACTATATGCACGAATCTTG 59.636 42.308 0.00 0.00 0.00 3.02
693 702 6.448006 GTCCAGTACTATATGCACGAATCTT 58.552 40.000 0.00 0.00 0.00 2.40
694 703 5.334957 CGTCCAGTACTATATGCACGAATCT 60.335 44.000 0.00 0.00 0.00 2.40
695 704 4.852104 CGTCCAGTACTATATGCACGAATC 59.148 45.833 0.00 0.00 0.00 2.52
696 705 4.517832 TCGTCCAGTACTATATGCACGAAT 59.482 41.667 0.00 0.00 32.44 3.34
697 706 3.878699 TCGTCCAGTACTATATGCACGAA 59.121 43.478 0.00 0.00 32.44 3.85
698 707 3.469739 TCGTCCAGTACTATATGCACGA 58.530 45.455 0.00 0.00 32.91 4.35
699 708 3.891056 TCGTCCAGTACTATATGCACG 57.109 47.619 0.00 0.00 0.00 5.34
700 709 5.372547 TCATCGTCCAGTACTATATGCAC 57.627 43.478 0.00 0.00 0.00 4.57
701 710 5.710099 TCATCATCGTCCAGTACTATATGCA 59.290 40.000 0.00 0.00 0.00 3.96
702 711 6.196079 TCATCATCGTCCAGTACTATATGC 57.804 41.667 0.00 0.00 0.00 3.14
703 712 7.221645 GCATTCATCATCGTCCAGTACTATATG 59.778 40.741 0.00 0.00 0.00 1.78
704 713 7.261325 GCATTCATCATCGTCCAGTACTATAT 58.739 38.462 0.00 0.00 0.00 0.86
705 714 6.621613 GCATTCATCATCGTCCAGTACTATA 58.378 40.000 0.00 0.00 0.00 1.31
706 715 5.473931 GCATTCATCATCGTCCAGTACTAT 58.526 41.667 0.00 0.00 0.00 2.12
707 716 4.556699 CGCATTCATCATCGTCCAGTACTA 60.557 45.833 0.00 0.00 0.00 1.82
708 717 3.722147 GCATTCATCATCGTCCAGTACT 58.278 45.455 0.00 0.00 0.00 2.73
709 718 2.472861 CGCATTCATCATCGTCCAGTAC 59.527 50.000 0.00 0.00 0.00 2.73
710 719 2.100749 ACGCATTCATCATCGTCCAGTA 59.899 45.455 0.00 0.00 0.00 2.74
711 720 1.134699 ACGCATTCATCATCGTCCAGT 60.135 47.619 0.00 0.00 0.00 4.00
712 721 1.259770 CACGCATTCATCATCGTCCAG 59.740 52.381 0.00 0.00 32.38 3.86
713 722 1.289276 CACGCATTCATCATCGTCCA 58.711 50.000 0.00 0.00 32.38 4.02
714 723 1.004610 CACACGCATTCATCATCGTCC 60.005 52.381 0.00 0.00 32.38 4.79
715 724 1.004610 CCACACGCATTCATCATCGTC 60.005 52.381 0.00 0.00 32.38 4.20
716 725 1.009078 CCACACGCATTCATCATCGT 58.991 50.000 0.00 0.00 35.35 3.73
717 726 1.004610 GACCACACGCATTCATCATCG 60.005 52.381 0.00 0.00 0.00 3.84
718 727 1.004610 CGACCACACGCATTCATCATC 60.005 52.381 0.00 0.00 0.00 2.92
719 728 1.009078 CGACCACACGCATTCATCAT 58.991 50.000 0.00 0.00 0.00 2.45
720 729 0.037790 TCGACCACACGCATTCATCA 60.038 50.000 0.00 0.00 0.00 3.07
721 730 0.647410 CTCGACCACACGCATTCATC 59.353 55.000 0.00 0.00 0.00 2.92
722 731 0.246360 TCTCGACCACACGCATTCAT 59.754 50.000 0.00 0.00 0.00 2.57
723 732 0.246360 ATCTCGACCACACGCATTCA 59.754 50.000 0.00 0.00 0.00 2.57
724 733 2.120232 CTATCTCGACCACACGCATTC 58.880 52.381 0.00 0.00 0.00 2.67
725 734 1.476891 ACTATCTCGACCACACGCATT 59.523 47.619 0.00 0.00 0.00 3.56
726 735 1.065701 GACTATCTCGACCACACGCAT 59.934 52.381 0.00 0.00 0.00 4.73
727 736 0.450583 GACTATCTCGACCACACGCA 59.549 55.000 0.00 0.00 0.00 5.24
728 737 0.450583 TGACTATCTCGACCACACGC 59.549 55.000 0.00 0.00 0.00 5.34
729 738 2.913777 TTGACTATCTCGACCACACG 57.086 50.000 0.00 0.00 0.00 4.49
730 739 2.860735 GCATTGACTATCTCGACCACAC 59.139 50.000 0.00 0.00 0.00 3.82
731 740 2.760650 AGCATTGACTATCTCGACCACA 59.239 45.455 0.00 0.00 0.00 4.17
732 741 3.181486 TGAGCATTGACTATCTCGACCAC 60.181 47.826 0.00 0.00 0.00 4.16
733 742 3.023832 TGAGCATTGACTATCTCGACCA 58.976 45.455 0.00 0.00 0.00 4.02
734 743 3.181486 TGTGAGCATTGACTATCTCGACC 60.181 47.826 0.00 0.00 0.00 4.79
735 744 3.794028 GTGTGAGCATTGACTATCTCGAC 59.206 47.826 0.00 0.00 0.00 4.20
736 745 3.487544 CGTGTGAGCATTGACTATCTCGA 60.488 47.826 0.00 0.00 0.00 4.04
737 746 2.786027 CGTGTGAGCATTGACTATCTCG 59.214 50.000 0.00 0.00 0.00 4.04
738 747 3.549471 CACGTGTGAGCATTGACTATCTC 59.451 47.826 7.58 0.00 0.00 2.75
739 748 3.056536 ACACGTGTGAGCATTGACTATCT 60.057 43.478 22.71 0.00 0.00 1.98
740 749 3.254060 ACACGTGTGAGCATTGACTATC 58.746 45.455 22.71 0.00 0.00 2.08
741 750 3.319137 ACACGTGTGAGCATTGACTAT 57.681 42.857 22.71 0.00 0.00 2.12
742 751 2.812358 ACACGTGTGAGCATTGACTA 57.188 45.000 22.71 0.00 0.00 2.59
743 752 3.686622 ACACGTGTGAGCATTGACT 57.313 47.368 22.71 0.00 0.00 3.41
833 842 1.007336 CGTTGCTGTGTACCGAGGTC 61.007 60.000 0.00 0.00 0.00 3.85
1795 1909 3.628193 GCTCAGATGCTCAGCGCG 61.628 66.667 0.00 0.00 43.27 6.86
1805 1919 3.790437 CGGGGTGCCTGCTCAGAT 61.790 66.667 0.00 0.00 0.00 2.90
1812 1932 1.106944 AACAAAAGACGGGGTGCCTG 61.107 55.000 0.00 0.00 35.68 4.85
1813 1933 0.396556 AAACAAAAGACGGGGTGCCT 60.397 50.000 0.00 0.00 0.00 4.75
1814 1934 0.031585 GAAACAAAAGACGGGGTGCC 59.968 55.000 0.00 0.00 0.00 5.01
1827 1947 0.749818 TTGCTCCACGCCTGAAACAA 60.750 50.000 0.00 0.00 38.05 2.83
1988 2108 2.400399 TCGTAGTTGAACGCCTTGAAG 58.600 47.619 0.00 0.00 42.56 3.02
2106 2239 1.067565 TGCACTCTCGAGCCTAAACAG 60.068 52.381 7.81 0.00 0.00 3.16
2162 2408 2.796557 TGGTTCAACCGCCAATAATCA 58.203 42.857 1.02 0.00 42.58 2.57
2171 2417 1.949257 CCTCACTTGGTTCAACCGC 59.051 57.895 1.02 0.00 42.58 5.68
2211 2460 8.592809 TGCAATTCCTACAGGATTTTATTGTTT 58.407 29.630 16.36 0.00 44.98 2.83
2213 2462 7.716799 TGCAATTCCTACAGGATTTTATTGT 57.283 32.000 16.36 0.00 44.98 2.71
2229 2478 4.332268 TGCAGTTTTCAGTTTTGCAATTCC 59.668 37.500 0.00 0.00 41.34 3.01
2309 2559 4.785512 CGCTCTCGCTCCGCAACT 62.786 66.667 0.00 0.00 0.00 3.16
2405 2661 4.644685 AGCCCATCATTGTAACGCTTAATT 59.355 37.500 0.00 0.00 0.00 1.40
2410 2666 1.668419 GAGCCCATCATTGTAACGCT 58.332 50.000 0.00 0.00 0.00 5.07
2542 2804 1.934459 TTGGAAAACCGGGTCACCCA 61.934 55.000 15.17 4.68 45.83 4.51
2600 2863 3.118920 CCACTGGGTTTTTCGGAGTTTTT 60.119 43.478 0.00 0.00 0.00 1.94
2624 2889 8.749354 ACTGTATGTTCTTTCCCCATATTTTTC 58.251 33.333 0.00 0.00 0.00 2.29
2635 2900 7.823149 ACAACGTATACTGTATGTTCTTTCC 57.177 36.000 10.51 0.00 0.00 3.13
2642 2907 7.546316 TGCAATACAACAACGTATACTGTATGT 59.454 33.333 10.51 12.83 34.32 2.29
2645 2910 6.033725 CGTGCAATACAACAACGTATACTGTA 59.966 38.462 0.56 3.10 31.76 2.74
2682 2948 5.818336 TGATGTTTCTCACACGAGGTTTTTA 59.182 36.000 0.00 0.00 38.61 1.52
2715 2981 8.167392 TGGATTGTACTCTTTTTCCCTTGAATA 58.833 33.333 0.00 0.00 0.00 1.75
2717 2983 6.264518 GTGGATTGTACTCTTTTTCCCTTGAA 59.735 38.462 0.00 0.00 0.00 2.69
2744 3010 5.970317 TCGAGTACTCAACTTGATGGTTA 57.030 39.130 22.37 0.00 42.69 2.85
2768 3034 5.227908 GTCGCTAAAATCTCAATCCCGATA 58.772 41.667 0.00 0.00 0.00 2.92
2905 3171 7.413438 GCATACTAAGTCTTGTGACAATCTTGG 60.413 40.741 18.91 18.27 45.20 3.61
3084 3350 2.165167 CAGCAGACATGTGGGTTGAAT 58.835 47.619 1.15 0.00 0.00 2.57
3089 3355 1.074405 ACATTCAGCAGACATGTGGGT 59.926 47.619 1.15 0.00 29.74 4.51
3161 3427 2.616960 CGAACCACTCGGAAATCATGA 58.383 47.619 0.00 0.00 44.20 3.07
3338 3604 3.026694 ACCAAAGATCTTGGCCTATTGC 58.973 45.455 9.17 0.00 43.23 3.56
3339 3605 3.633986 GGACCAAAGATCTTGGCCTATTG 59.366 47.826 9.17 1.30 43.23 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.