Multiple sequence alignment - TraesCS2B01G353600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G353600 chr2B 100.000 2531 0 0 1 2531 504475431 504472901 0.000000e+00 4674.0
1 TraesCS2B01G353600 chr2D 89.950 1801 124 26 313 2091 427577211 427575446 0.000000e+00 2270.0
2 TraesCS2B01G353600 chr2D 88.492 252 12 6 2250 2501 427575446 427575212 3.190000e-74 289.0
3 TraesCS2B01G353600 chr2D 91.925 161 12 1 2089 2248 63708408 63708568 9.110000e-55 224.0
4 TraesCS2B01G353600 chr2D 90.476 168 15 1 2087 2253 624365770 624365937 1.180000e-53 220.0
5 TraesCS2B01G353600 chr2A 91.100 1191 80 12 505 1671 560771481 560772669 0.000000e+00 1589.0
6 TraesCS2B01G353600 chr7B 91.765 170 11 3 2090 2257 428829375 428829543 1.510000e-57 233.0
7 TraesCS2B01G353600 chr4A 90.395 177 15 2 2089 2263 150653475 150653299 5.450000e-57 231.0
8 TraesCS2B01G353600 chr4A 91.018 167 14 1 2083 2248 27641945 27642111 9.110000e-55 224.0
9 TraesCS2B01G353600 chr3B 92.025 163 9 4 2092 2252 805684942 805684782 2.530000e-55 226.0
10 TraesCS2B01G353600 chr7A 91.071 168 12 3 2093 2257 476915652 476915819 9.110000e-55 224.0
11 TraesCS2B01G353600 chr7A 81.633 98 17 1 531 627 620632655 620632752 2.090000e-11 80.5
12 TraesCS2B01G353600 chr5A 91.875 160 12 1 2090 2248 653299440 653299599 3.280000e-54 222.0
13 TraesCS2B01G353600 chrUn 90.476 168 15 1 2090 2256 109117204 109117371 1.180000e-53 220.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G353600 chr2B 504472901 504475431 2530 True 4674.0 4674 100.000 1 2531 1 chr2B.!!$R1 2530
1 TraesCS2B01G353600 chr2D 427575212 427577211 1999 True 1279.5 2270 89.221 313 2501 2 chr2D.!!$R1 2188
2 TraesCS2B01G353600 chr2A 560771481 560772669 1188 False 1589.0 1589 91.100 505 1671 1 chr2A.!!$F1 1166

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
233 234 0.02877 GAGAGATCGGACAGCTGTCG 59.971 60.0 34.28 28.58 45.65 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2232 2276 0.040646 TCTGCTCCCTCCGTTCCTAA 59.959 55.0 0.0 0.0 0.0 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 8.738645 AGAGTGACTTTGTCTTTAGAAATTGT 57.261 30.769 0.00 0.00 33.15 2.71
28 29 8.616076 AGAGTGACTTTGTCTTTAGAAATTGTG 58.384 33.333 0.00 0.00 33.15 3.33
29 30 8.506168 AGTGACTTTGTCTTTAGAAATTGTGA 57.494 30.769 0.00 0.00 33.15 3.58
30 31 8.956426 AGTGACTTTGTCTTTAGAAATTGTGAA 58.044 29.630 0.00 0.00 33.15 3.18
31 32 9.567848 GTGACTTTGTCTTTAGAAATTGTGAAA 57.432 29.630 0.00 0.00 33.15 2.69
50 51 7.948137 TGTGAAATTTTTATGCGAAATACTGC 58.052 30.769 0.00 0.00 0.00 4.40
51 52 7.812191 TGTGAAATTTTTATGCGAAATACTGCT 59.188 29.630 0.00 0.00 0.00 4.24
52 53 9.284594 GTGAAATTTTTATGCGAAATACTGCTA 57.715 29.630 0.00 0.00 0.00 3.49
58 59 4.739046 ATGCGAAATACTGCTATTCAGC 57.261 40.909 0.00 0.00 46.76 4.26
68 69 0.590195 GCTATTCAGCCAGCCAATCG 59.410 55.000 0.00 0.00 42.37 3.34
69 70 1.233019 CTATTCAGCCAGCCAATCGG 58.767 55.000 0.00 0.00 0.00 4.18
70 71 0.179020 TATTCAGCCAGCCAATCGGG 60.179 55.000 0.00 0.00 40.85 5.14
96 97 3.474007 CGTCTAGCGTGTTGTCTGT 57.526 52.632 0.00 0.00 35.54 3.41
97 98 2.606717 CGTCTAGCGTGTTGTCTGTA 57.393 50.000 0.00 0.00 35.54 2.74
98 99 3.132629 CGTCTAGCGTGTTGTCTGTAT 57.867 47.619 0.00 0.00 35.54 2.29
99 100 2.846550 CGTCTAGCGTGTTGTCTGTATG 59.153 50.000 0.00 0.00 35.54 2.39
100 101 2.599082 GTCTAGCGTGTTGTCTGTATGC 59.401 50.000 0.00 0.00 0.00 3.14
101 102 1.927174 CTAGCGTGTTGTCTGTATGCC 59.073 52.381 0.00 0.00 0.00 4.40
102 103 0.034756 AGCGTGTTGTCTGTATGCCA 59.965 50.000 0.00 0.00 0.00 4.92
103 104 1.086696 GCGTGTTGTCTGTATGCCAT 58.913 50.000 0.00 0.00 0.00 4.40
104 105 1.202065 GCGTGTTGTCTGTATGCCATG 60.202 52.381 0.00 0.00 0.00 3.66
105 106 2.076100 CGTGTTGTCTGTATGCCATGT 58.924 47.619 0.00 0.00 0.00 3.21
106 107 2.159667 CGTGTTGTCTGTATGCCATGTG 60.160 50.000 0.00 0.00 0.00 3.21
107 108 1.811965 TGTTGTCTGTATGCCATGTGC 59.188 47.619 0.00 0.00 41.77 4.57
108 109 2.086869 GTTGTCTGTATGCCATGTGCT 58.913 47.619 7.54 0.00 42.00 4.40
109 110 2.028420 TGTCTGTATGCCATGTGCTC 57.972 50.000 7.54 0.00 42.00 4.26
110 111 1.556451 TGTCTGTATGCCATGTGCTCT 59.444 47.619 7.54 0.00 42.00 4.09
111 112 1.938577 GTCTGTATGCCATGTGCTCTG 59.061 52.381 7.54 3.80 42.00 3.35
112 113 1.832998 TCTGTATGCCATGTGCTCTGA 59.167 47.619 7.54 5.48 42.00 3.27
113 114 2.159000 TCTGTATGCCATGTGCTCTGAG 60.159 50.000 0.00 0.00 42.00 3.35
114 115 1.556451 TGTATGCCATGTGCTCTGAGT 59.444 47.619 6.53 0.00 42.00 3.41
115 116 2.208431 GTATGCCATGTGCTCTGAGTC 58.792 52.381 6.53 0.00 42.00 3.36
116 117 0.616891 ATGCCATGTGCTCTGAGTCA 59.383 50.000 6.53 6.82 42.00 3.41
117 118 0.616891 TGCCATGTGCTCTGAGTCAT 59.383 50.000 6.53 8.73 42.00 3.06
118 119 1.297664 GCCATGTGCTCTGAGTCATC 58.702 55.000 6.53 1.93 36.87 2.92
119 120 1.134461 GCCATGTGCTCTGAGTCATCT 60.134 52.381 6.53 0.00 36.87 2.90
120 121 2.552031 CCATGTGCTCTGAGTCATCTG 58.448 52.381 6.53 6.69 0.00 2.90
121 122 1.934525 CATGTGCTCTGAGTCATCTGC 59.065 52.381 6.53 0.00 0.00 4.26
122 123 1.264295 TGTGCTCTGAGTCATCTGCT 58.736 50.000 6.53 0.00 0.00 4.24
123 124 2.450476 TGTGCTCTGAGTCATCTGCTA 58.550 47.619 6.53 1.78 0.00 3.49
124 125 2.165234 TGTGCTCTGAGTCATCTGCTAC 59.835 50.000 6.53 9.16 0.00 3.58
125 126 2.165234 GTGCTCTGAGTCATCTGCTACA 59.835 50.000 6.53 0.00 0.00 2.74
126 127 3.029570 TGCTCTGAGTCATCTGCTACAT 58.970 45.455 6.53 0.00 0.00 2.29
127 128 4.037327 GTGCTCTGAGTCATCTGCTACATA 59.963 45.833 6.53 0.00 0.00 2.29
128 129 4.831710 TGCTCTGAGTCATCTGCTACATAT 59.168 41.667 6.53 0.00 0.00 1.78
129 130 5.048154 TGCTCTGAGTCATCTGCTACATATC 60.048 44.000 6.53 0.00 0.00 1.63
130 131 5.622007 GCTCTGAGTCATCTGCTACATATCC 60.622 48.000 6.53 0.00 0.00 2.59
131 132 4.769488 TCTGAGTCATCTGCTACATATCCC 59.231 45.833 0.00 0.00 0.00 3.85
132 133 4.745351 TGAGTCATCTGCTACATATCCCT 58.255 43.478 0.00 0.00 0.00 4.20
133 134 5.150715 TGAGTCATCTGCTACATATCCCTT 58.849 41.667 0.00 0.00 0.00 3.95
134 135 5.011431 TGAGTCATCTGCTACATATCCCTTG 59.989 44.000 0.00 0.00 0.00 3.61
135 136 3.999663 GTCATCTGCTACATATCCCTTGC 59.000 47.826 0.00 0.00 0.00 4.01
136 137 3.906218 TCATCTGCTACATATCCCTTGCT 59.094 43.478 0.00 0.00 0.00 3.91
137 138 3.758755 TCTGCTACATATCCCTTGCTG 57.241 47.619 0.00 0.00 0.00 4.41
138 139 2.149578 CTGCTACATATCCCTTGCTGC 58.850 52.381 0.00 0.00 0.00 5.25
139 140 1.490069 TGCTACATATCCCTTGCTGCA 59.510 47.619 0.00 0.00 0.00 4.41
140 141 2.092484 TGCTACATATCCCTTGCTGCAA 60.092 45.455 15.16 15.16 0.00 4.08
141 142 2.551459 GCTACATATCCCTTGCTGCAAG 59.449 50.000 30.44 30.44 40.75 4.01
142 143 3.745480 GCTACATATCCCTTGCTGCAAGA 60.745 47.826 36.69 22.34 43.42 3.02
143 144 2.648059 ACATATCCCTTGCTGCAAGAC 58.352 47.619 36.69 0.00 43.42 3.01
144 145 1.600957 CATATCCCTTGCTGCAAGACG 59.399 52.381 36.69 26.57 43.42 4.18
145 146 0.744414 TATCCCTTGCTGCAAGACGC 60.744 55.000 36.69 0.00 43.42 5.19
146 147 4.093952 CCCTTGCTGCAAGACGCG 62.094 66.667 36.69 22.39 46.97 6.01
162 163 4.639171 CGGGGGCGCAACACAAAC 62.639 66.667 10.83 0.00 0.00 2.93
163 164 3.532155 GGGGGCGCAACACAAACA 61.532 61.111 10.83 0.00 0.00 2.83
164 165 2.027460 GGGGCGCAACACAAACAG 59.973 61.111 10.83 0.00 0.00 3.16
165 166 2.027460 GGGCGCAACACAAACAGG 59.973 61.111 10.83 0.00 0.00 4.00
166 167 2.485795 GGGCGCAACACAAACAGGA 61.486 57.895 10.83 0.00 0.00 3.86
167 168 1.659794 GGCGCAACACAAACAGGAT 59.340 52.632 10.83 0.00 0.00 3.24
168 169 0.664166 GGCGCAACACAAACAGGATG 60.664 55.000 10.83 0.00 46.00 3.51
179 180 3.414272 CAGGATGTAGCGCAAGGC 58.586 61.111 11.47 0.00 44.05 4.35
193 194 0.932399 CAAGGCTTGTTGCAACTTGC 59.068 50.000 28.61 27.78 45.15 4.01
212 213 2.364243 CGAAAGCTCATTCGCTCATG 57.636 50.000 7.56 0.00 44.69 3.07
213 214 1.004185 CGAAAGCTCATTCGCTCATGG 60.004 52.381 7.56 0.00 44.69 3.66
214 215 1.332997 GAAAGCTCATTCGCTCATGGG 59.667 52.381 0.00 0.00 39.86 4.00
215 216 0.543277 AAGCTCATTCGCTCATGGGA 59.457 50.000 0.00 0.00 39.86 4.37
216 217 0.106335 AGCTCATTCGCTCATGGGAG 59.894 55.000 0.00 0.00 44.33 4.30
217 218 0.105593 GCTCATTCGCTCATGGGAGA 59.894 55.000 0.00 0.00 44.26 3.71
218 219 1.873069 GCTCATTCGCTCATGGGAGAG 60.873 57.143 0.00 0.00 44.26 3.20
219 220 1.685517 CTCATTCGCTCATGGGAGAGA 59.314 52.381 0.00 0.00 46.39 3.10
222 223 2.335323 TCGCTCATGGGAGAGATCG 58.665 57.895 0.00 0.00 43.76 3.69
223 224 1.175347 TCGCTCATGGGAGAGATCGG 61.175 60.000 0.00 0.00 43.76 4.18
224 225 1.175347 CGCTCATGGGAGAGATCGGA 61.175 60.000 0.00 0.00 42.85 4.55
225 226 0.316841 GCTCATGGGAGAGATCGGAC 59.683 60.000 0.00 0.00 44.26 4.79
226 227 1.697284 CTCATGGGAGAGATCGGACA 58.303 55.000 0.00 0.00 44.26 4.02
227 228 1.612950 CTCATGGGAGAGATCGGACAG 59.387 57.143 0.00 0.00 44.26 3.51
228 229 0.033228 CATGGGAGAGATCGGACAGC 59.967 60.000 0.00 0.00 0.00 4.40
229 230 0.105760 ATGGGAGAGATCGGACAGCT 60.106 55.000 0.00 0.00 0.00 4.24
230 231 1.039785 TGGGAGAGATCGGACAGCTG 61.040 60.000 13.48 13.48 0.00 4.24
231 232 1.040339 GGGAGAGATCGGACAGCTGT 61.040 60.000 21.88 21.88 0.00 4.40
232 233 0.383949 GGAGAGATCGGACAGCTGTC 59.616 60.000 34.25 34.25 44.04 3.51
233 234 0.028770 GAGAGATCGGACAGCTGTCG 59.971 60.000 34.28 28.58 45.65 4.35
234 235 1.587613 GAGATCGGACAGCTGTCGC 60.588 63.158 34.28 26.37 45.65 5.19
235 236 2.181777 GATCGGACAGCTGTCGCA 59.818 61.111 34.28 25.23 45.65 5.10
236 237 1.227089 GATCGGACAGCTGTCGCAT 60.227 57.895 34.28 28.16 45.65 4.73
237 238 0.030773 GATCGGACAGCTGTCGCATA 59.969 55.000 34.28 21.81 45.65 3.14
238 239 0.031314 ATCGGACAGCTGTCGCATAG 59.969 55.000 34.28 23.37 45.65 2.23
239 240 1.029947 TCGGACAGCTGTCGCATAGA 61.030 55.000 34.28 24.88 45.65 1.98
240 241 0.179137 CGGACAGCTGTCGCATAGAA 60.179 55.000 34.28 0.00 45.65 2.10
241 242 1.735700 CGGACAGCTGTCGCATAGAAA 60.736 52.381 34.28 0.00 45.65 2.52
242 243 2.346803 GGACAGCTGTCGCATAGAAAA 58.653 47.619 34.28 0.00 45.65 2.29
243 244 2.349886 GGACAGCTGTCGCATAGAAAAG 59.650 50.000 34.28 0.00 45.65 2.27
244 245 3.254060 GACAGCTGTCGCATAGAAAAGA 58.746 45.455 29.84 0.00 39.10 2.52
245 246 3.664107 ACAGCTGTCGCATAGAAAAGAA 58.336 40.909 15.25 0.00 39.10 2.52
246 247 4.065088 ACAGCTGTCGCATAGAAAAGAAA 58.935 39.130 15.25 0.00 39.10 2.52
247 248 4.083802 ACAGCTGTCGCATAGAAAAGAAAC 60.084 41.667 15.25 0.00 39.10 2.78
248 249 4.065088 AGCTGTCGCATAGAAAAGAAACA 58.935 39.130 0.00 0.00 39.10 2.83
249 250 4.515191 AGCTGTCGCATAGAAAAGAAACAA 59.485 37.500 0.00 0.00 39.10 2.83
250 251 4.613031 GCTGTCGCATAGAAAAGAAACAAC 59.387 41.667 0.00 0.00 35.78 3.32
251 252 4.768145 TGTCGCATAGAAAAGAAACAACG 58.232 39.130 0.00 0.00 0.00 4.10
252 253 4.148891 GTCGCATAGAAAAGAAACAACGG 58.851 43.478 0.00 0.00 0.00 4.44
253 254 2.908626 CGCATAGAAAAGAAACAACGGC 59.091 45.455 0.00 0.00 0.00 5.68
254 255 3.364964 CGCATAGAAAAGAAACAACGGCT 60.365 43.478 0.00 0.00 0.00 5.52
255 256 4.159120 GCATAGAAAAGAAACAACGGCTC 58.841 43.478 0.00 0.00 0.00 4.70
256 257 4.320202 GCATAGAAAAGAAACAACGGCTCA 60.320 41.667 0.00 0.00 0.00 4.26
257 258 3.692791 AGAAAAGAAACAACGGCTCAC 57.307 42.857 0.00 0.00 0.00 3.51
258 259 3.013921 AGAAAAGAAACAACGGCTCACA 58.986 40.909 0.00 0.00 0.00 3.58
259 260 3.442273 AGAAAAGAAACAACGGCTCACAA 59.558 39.130 0.00 0.00 0.00 3.33
260 261 3.420839 AAAGAAACAACGGCTCACAAG 57.579 42.857 0.00 0.00 0.00 3.16
261 262 2.325583 AGAAACAACGGCTCACAAGA 57.674 45.000 0.00 0.00 0.00 3.02
262 263 2.213499 AGAAACAACGGCTCACAAGAG 58.787 47.619 0.00 0.00 44.96 2.85
263 264 1.264288 GAAACAACGGCTCACAAGAGG 59.736 52.381 0.00 0.00 42.33 3.69
264 265 0.535102 AACAACGGCTCACAAGAGGG 60.535 55.000 0.00 0.00 42.33 4.30
265 266 1.672356 CAACGGCTCACAAGAGGGG 60.672 63.158 0.00 0.00 42.33 4.79
266 267 1.841556 AACGGCTCACAAGAGGGGA 60.842 57.895 0.00 0.00 42.33 4.81
267 268 2.113243 AACGGCTCACAAGAGGGGAC 62.113 60.000 0.00 0.00 42.33 4.46
324 325 2.673114 CCGGCGCGAAAAAGCTGTA 61.673 57.895 12.10 0.00 38.02 2.74
333 334 5.511729 GCGCGAAAAAGCTGTAAAGATAATT 59.488 36.000 12.10 0.00 34.40 1.40
337 338 7.148820 GCGAAAAAGCTGTAAAGATAATTGCAA 60.149 33.333 0.00 0.00 0.00 4.08
339 340 7.566858 AAAAGCTGTAAAGATAATTGCAACG 57.433 32.000 0.00 0.00 0.00 4.10
357 358 1.779569 CGAGGCTCGTGTTGTAAAGT 58.220 50.000 27.92 0.00 34.72 2.66
361 362 2.612212 AGGCTCGTGTTGTAAAGTGTTG 59.388 45.455 0.00 0.00 0.00 3.33
362 363 2.610374 GGCTCGTGTTGTAAAGTGTTGA 59.390 45.455 0.00 0.00 0.00 3.18
384 385 1.753956 GTAACACAAGGCTTGTTGCG 58.246 50.000 29.32 20.35 43.23 4.85
388 389 0.662619 CACAAGGCTTGTTGCGAAGA 59.337 50.000 29.32 0.00 43.23 2.87
401 402 1.444553 CGAAGACTCGGTGGCTCAC 60.445 63.158 0.00 0.00 41.57 3.51
402 403 1.666011 GAAGACTCGGTGGCTCACA 59.334 57.895 7.49 0.00 35.86 3.58
403 404 0.247736 GAAGACTCGGTGGCTCACAT 59.752 55.000 7.49 0.00 35.86 3.21
404 405 0.036952 AAGACTCGGTGGCTCACATG 60.037 55.000 7.49 0.00 35.86 3.21
421 422 3.881688 CACATGGAGGGATCAAATGACTC 59.118 47.826 0.00 0.00 0.00 3.36
422 423 3.117738 ACATGGAGGGATCAAATGACTCC 60.118 47.826 10.21 10.21 46.14 3.85
480 481 2.863401 TCGTCCGATCAATGTGTAGG 57.137 50.000 0.00 0.00 0.00 3.18
489 490 2.181125 TCAATGTGTAGGGTCCGCTAA 58.819 47.619 0.00 0.00 0.00 3.09
495 496 4.004982 TGTGTAGGGTCCGCTAATTTTTC 58.995 43.478 0.00 0.00 0.00 2.29
497 498 5.046448 TGTGTAGGGTCCGCTAATTTTTCTA 60.046 40.000 0.00 0.00 0.00 2.10
528 529 6.731467 ACAAGGACCCTAATAATTGTCACAT 58.269 36.000 0.00 0.00 0.00 3.21
529 530 6.603201 ACAAGGACCCTAATAATTGTCACATG 59.397 38.462 0.00 0.00 0.00 3.21
533 534 6.772716 GGACCCTAATAATTGTCACATGTCAT 59.227 38.462 0.00 0.00 0.00 3.06
590 591 4.092968 GCAAGTTTAGTTACGTGAGGATGG 59.907 45.833 0.00 0.00 30.41 3.51
591 592 3.858247 AGTTTAGTTACGTGAGGATGGC 58.142 45.455 0.00 0.00 0.00 4.40
593 594 3.520290 TTAGTTACGTGAGGATGGCAG 57.480 47.619 0.00 0.00 0.00 4.85
632 633 1.063469 ACAACTTCGTGCTTCGGTTTG 59.937 47.619 2.56 6.02 40.32 2.93
651 652 5.390461 GGTTTGTTTTTGACAGAAACTTGCC 60.390 40.000 19.04 14.30 39.94 4.52
654 655 4.156190 TGTTTTTGACAGAAACTTGCCGTA 59.844 37.500 19.04 0.00 37.75 4.02
669 670 3.263261 TGCCGTATGTCGCTGAAATTTA 58.737 40.909 0.00 0.00 38.35 1.40
670 671 3.685272 TGCCGTATGTCGCTGAAATTTAA 59.315 39.130 0.00 0.00 38.35 1.52
686 687 6.372937 TGAAATTTAACATCCATGCGTGACTA 59.627 34.615 7.72 0.00 0.00 2.59
703 704 6.461816 CGTGACTAGAATTGTCATCGAAAAG 58.538 40.000 0.00 0.00 44.74 2.27
713 735 3.196901 TGTCATCGAAAAGCTTAGGCCTA 59.803 43.478 8.91 8.91 39.73 3.93
716 738 4.100963 TCATCGAAAAGCTTAGGCCTATGA 59.899 41.667 25.81 15.07 39.73 2.15
737 759 6.293004 TGACACTTTCATTTGGGAAAAACT 57.707 33.333 0.00 0.00 36.42 2.66
738 760 6.105333 TGACACTTTCATTTGGGAAAAACTG 58.895 36.000 0.00 0.00 36.42 3.16
825 856 7.687445 TCCGAAACAAAGACAAAACTAACTAC 58.313 34.615 0.00 0.00 0.00 2.73
1030 1066 0.107214 TAAATCCCAAGGCCGAGCAG 60.107 55.000 0.00 0.00 0.00 4.24
1089 1125 2.757099 GAACGGACCGAGGCCCTA 60.757 66.667 23.38 0.00 0.00 3.53
1092 1128 4.203076 CGGACCGAGGCCCTAACG 62.203 72.222 8.64 0.00 0.00 3.18
1570 1606 1.006922 TCACGCAGCTGAGTGAGTG 60.007 57.895 38.87 26.35 46.99 3.51
1592 1628 1.218875 TTAACTGTGGACTGCGCGTG 61.219 55.000 8.43 3.52 0.00 5.34
1662 1699 3.277133 GCAGCTTGCGAATTGGGA 58.723 55.556 0.00 0.00 31.71 4.37
1663 1700 1.138247 GCAGCTTGCGAATTGGGAG 59.862 57.895 0.00 0.00 31.71 4.30
1664 1701 1.589716 GCAGCTTGCGAATTGGGAGT 61.590 55.000 0.00 0.00 31.71 3.85
1672 1710 3.278574 TGCGAATTGGGAGTCTATTTGG 58.721 45.455 0.00 0.00 0.00 3.28
1687 1725 2.871096 TTTGGGTAGAACCTGCGAAT 57.129 45.000 0.00 0.00 38.64 3.34
1749 1792 3.957497 TGAACTAGGCTTTTCCAAAGCAA 59.043 39.130 19.99 8.80 44.71 3.91
1751 1794 3.295973 ACTAGGCTTTTCCAAAGCAACA 58.704 40.909 19.99 6.15 44.71 3.33
1754 1797 3.949132 AGGCTTTTCCAAAGCAACAAAA 58.051 36.364 19.99 0.00 44.71 2.44
1757 1800 4.576053 GGCTTTTCCAAAGCAACAAAATCT 59.424 37.500 19.99 0.00 44.71 2.40
1769 1812 9.578439 AAAGCAACAAAATCTTTAGATAGATGC 57.422 29.630 10.91 10.91 35.12 3.91
1780 1823 3.577649 AGATAGATGCCACGATAACCG 57.422 47.619 0.00 0.00 45.44 4.44
1787 1830 1.087771 GCCACGATAACCGGTTCCAG 61.088 60.000 26.16 17.82 43.93 3.86
1790 1833 0.390735 ACGATAACCGGTTCCAGTGC 60.391 55.000 26.16 7.00 43.93 4.40
1791 1834 0.108329 CGATAACCGGTTCCAGTGCT 60.108 55.000 26.16 0.00 33.91 4.40
1792 1835 1.653151 GATAACCGGTTCCAGTGCTC 58.347 55.000 26.16 6.73 0.00 4.26
1793 1836 0.981183 ATAACCGGTTCCAGTGCTCA 59.019 50.000 26.16 2.51 0.00 4.26
1794 1837 0.320374 TAACCGGTTCCAGTGCTCAG 59.680 55.000 26.16 0.00 0.00 3.35
1795 1838 1.696097 AACCGGTTCCAGTGCTCAGT 61.696 55.000 15.86 0.00 0.00 3.41
1796 1839 1.669115 CCGGTTCCAGTGCTCAGTG 60.669 63.158 0.00 0.00 0.00 3.66
1797 1840 1.367471 CGGTTCCAGTGCTCAGTGA 59.633 57.895 6.29 0.00 33.67 3.41
1798 1841 0.668706 CGGTTCCAGTGCTCAGTGAG 60.669 60.000 16.21 16.21 33.67 3.51
1799 1842 0.681733 GGTTCCAGTGCTCAGTGAGA 59.318 55.000 24.55 6.27 33.67 3.27
1800 1843 1.070758 GGTTCCAGTGCTCAGTGAGAA 59.929 52.381 24.55 11.17 33.67 2.87
1801 1844 2.289945 GGTTCCAGTGCTCAGTGAGAAT 60.290 50.000 24.55 5.36 33.67 2.40
1802 1845 2.999355 GTTCCAGTGCTCAGTGAGAATC 59.001 50.000 24.55 12.10 33.67 2.52
1803 1846 1.552337 TCCAGTGCTCAGTGAGAATCC 59.448 52.381 24.55 6.44 33.67 3.01
1804 1847 1.638133 CAGTGCTCAGTGAGAATCCG 58.362 55.000 24.55 2.22 33.67 4.18
1805 1848 0.108424 AGTGCTCAGTGAGAATCCGC 60.108 55.000 24.55 12.06 0.00 5.54
1806 1849 1.086634 GTGCTCAGTGAGAATCCGCC 61.087 60.000 24.55 4.57 0.00 6.13
1807 1850 1.260538 TGCTCAGTGAGAATCCGCCT 61.261 55.000 24.55 0.00 0.00 5.52
1808 1851 0.747255 GCTCAGTGAGAATCCGCCTA 59.253 55.000 24.55 0.00 0.00 3.93
1809 1852 1.137086 GCTCAGTGAGAATCCGCCTAA 59.863 52.381 24.55 0.00 0.00 2.69
1810 1853 2.418746 GCTCAGTGAGAATCCGCCTAAA 60.419 50.000 24.55 0.00 0.00 1.85
1811 1854 3.861840 CTCAGTGAGAATCCGCCTAAAA 58.138 45.455 15.46 0.00 0.00 1.52
1812 1855 4.253685 CTCAGTGAGAATCCGCCTAAAAA 58.746 43.478 15.46 0.00 0.00 1.94
1859 1902 3.615224 TGTATGACAGAGCAATGCTGA 57.385 42.857 14.48 0.00 39.88 4.26
1862 1906 4.945543 TGTATGACAGAGCAATGCTGATTT 59.054 37.500 14.48 0.00 39.88 2.17
2070 2114 3.067106 GAGAACTGCGGATTCTTGTTGA 58.933 45.455 0.00 0.00 36.53 3.18
2081 2125 1.689984 TCTTGTTGAAGTGCATGCCA 58.310 45.000 16.68 2.24 0.00 4.92
2085 2129 2.093890 TGTTGAAGTGCATGCCATAGG 58.906 47.619 16.68 0.00 0.00 2.57
2090 2134 3.136260 TGAAGTGCATGCCATAGGACATA 59.864 43.478 16.68 0.00 0.00 2.29
2091 2135 3.131709 AGTGCATGCCATAGGACATAC 57.868 47.619 16.68 2.02 0.00 2.39
2092 2136 2.707791 AGTGCATGCCATAGGACATACT 59.292 45.455 16.68 4.62 0.00 2.12
2093 2137 3.070018 GTGCATGCCATAGGACATACTC 58.930 50.000 16.68 0.00 0.00 2.59
2094 2138 2.038952 TGCATGCCATAGGACATACTCC 59.961 50.000 16.68 0.00 39.81 3.85
2095 2139 2.616510 GCATGCCATAGGACATACTCCC 60.617 54.545 6.36 0.00 40.53 4.30
2096 2140 2.795291 TGCCATAGGACATACTCCCT 57.205 50.000 0.00 0.00 40.53 4.20
2097 2141 2.609747 TGCCATAGGACATACTCCCTC 58.390 52.381 0.00 0.00 40.53 4.30
2098 2142 1.903183 GCCATAGGACATACTCCCTCC 59.097 57.143 0.00 0.00 40.53 4.30
2099 2143 2.171840 CCATAGGACATACTCCCTCCG 58.828 57.143 0.00 0.00 40.53 4.63
2100 2144 2.491086 CCATAGGACATACTCCCTCCGT 60.491 54.545 0.00 0.00 40.53 4.69
2101 2145 3.231818 CATAGGACATACTCCCTCCGTT 58.768 50.000 0.00 0.00 40.53 4.44
2102 2146 2.249309 AGGACATACTCCCTCCGTTT 57.751 50.000 0.00 0.00 40.53 3.60
2103 2147 2.108970 AGGACATACTCCCTCCGTTTC 58.891 52.381 0.00 0.00 40.53 2.78
2104 2148 2.108970 GGACATACTCCCTCCGTTTCT 58.891 52.381 0.00 0.00 31.83 2.52
2105 2149 3.053095 AGGACATACTCCCTCCGTTTCTA 60.053 47.826 0.00 0.00 40.53 2.10
2106 2150 3.703052 GGACATACTCCCTCCGTTTCTAA 59.297 47.826 0.00 0.00 31.83 2.10
2107 2151 4.161001 GGACATACTCCCTCCGTTTCTAAA 59.839 45.833 0.00 0.00 31.83 1.85
2108 2152 5.163332 GGACATACTCCCTCCGTTTCTAAAT 60.163 44.000 0.00 0.00 31.83 1.40
2109 2153 6.041296 GGACATACTCCCTCCGTTTCTAAATA 59.959 42.308 0.00 0.00 31.83 1.40
2110 2154 7.256225 GGACATACTCCCTCCGTTTCTAAATAT 60.256 40.741 0.00 0.00 31.83 1.28
2111 2155 8.716674 ACATACTCCCTCCGTTTCTAAATATA 57.283 34.615 0.00 0.00 0.00 0.86
2112 2156 9.151177 ACATACTCCCTCCGTTTCTAAATATAA 57.849 33.333 0.00 0.00 0.00 0.98
2113 2157 9.640963 CATACTCCCTCCGTTTCTAAATATAAG 57.359 37.037 0.00 0.00 0.00 1.73
2114 2158 7.909485 ACTCCCTCCGTTTCTAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
2115 2159 7.724287 ACTCCCTCCGTTTCTAAATATAAGAC 58.276 38.462 0.00 0.00 0.00 3.01
2116 2160 7.059202 TCCCTCCGTTTCTAAATATAAGACC 57.941 40.000 0.00 0.00 0.00 3.85
2117 2161 6.842807 TCCCTCCGTTTCTAAATATAAGACCT 59.157 38.462 0.00 0.00 0.00 3.85
2118 2162 7.346436 TCCCTCCGTTTCTAAATATAAGACCTT 59.654 37.037 0.00 0.00 0.00 3.50
2119 2163 7.991460 CCCTCCGTTTCTAAATATAAGACCTTT 59.009 37.037 0.00 0.00 0.00 3.11
2120 2164 9.392259 CCTCCGTTTCTAAATATAAGACCTTTT 57.608 33.333 0.00 0.00 0.00 2.27
2137 2181 8.934507 AGACCTTTTAGAGATTTCAATACGAG 57.065 34.615 0.00 0.00 0.00 4.18
2138 2182 7.492994 AGACCTTTTAGAGATTTCAATACGAGC 59.507 37.037 0.00 0.00 0.00 5.03
2139 2183 7.331791 ACCTTTTAGAGATTTCAATACGAGCT 58.668 34.615 0.00 0.00 0.00 4.09
2140 2184 8.475639 ACCTTTTAGAGATTTCAATACGAGCTA 58.524 33.333 0.00 0.00 0.00 3.32
2141 2185 8.756864 CCTTTTAGAGATTTCAATACGAGCTAC 58.243 37.037 0.00 0.00 0.00 3.58
2142 2186 9.302345 CTTTTAGAGATTTCAATACGAGCTACA 57.698 33.333 0.00 0.00 0.00 2.74
2143 2187 9.817809 TTTTAGAGATTTCAATACGAGCTACAT 57.182 29.630 0.00 0.00 0.00 2.29
2145 2189 9.894783 TTAGAGATTTCAATACGAGCTACATAC 57.105 33.333 0.00 0.00 0.00 2.39
2146 2190 7.078851 AGAGATTTCAATACGAGCTACATACG 58.921 38.462 0.00 0.00 0.00 3.06
2147 2191 6.150318 AGATTTCAATACGAGCTACATACGG 58.850 40.000 0.00 0.00 0.00 4.02
2148 2192 5.503662 TTTCAATACGAGCTACATACGGA 57.496 39.130 0.00 0.00 0.00 4.69
2149 2193 5.700722 TTCAATACGAGCTACATACGGAT 57.299 39.130 0.00 0.00 31.66 4.18
2150 2194 5.043189 TCAATACGAGCTACATACGGATG 57.957 43.478 5.94 5.94 39.16 3.51
2152 2196 5.702209 TCAATACGAGCTACATACGGATGTA 59.298 40.000 19.32 19.32 44.77 2.29
2153 2197 6.373495 TCAATACGAGCTACATACGGATGTAT 59.627 38.462 20.64 7.28 45.42 2.29
2154 2198 7.550196 TCAATACGAGCTACATACGGATGTATA 59.450 37.037 20.64 10.32 45.42 1.47
2155 2199 8.343366 CAATACGAGCTACATACGGATGTATAT 58.657 37.037 20.64 12.07 45.42 0.86
2156 2200 9.551734 AATACGAGCTACATACGGATGTATATA 57.448 33.333 20.64 9.35 45.42 0.86
2157 2201 7.479897 ACGAGCTACATACGGATGTATATAG 57.520 40.000 20.64 12.04 45.42 1.31
2158 2202 7.270779 ACGAGCTACATACGGATGTATATAGA 58.729 38.462 20.64 0.00 45.42 1.98
2159 2203 7.224362 ACGAGCTACATACGGATGTATATAGAC 59.776 40.741 20.64 7.56 45.42 2.59
2160 2204 7.224167 CGAGCTACATACGGATGTATATAGACA 59.776 40.741 20.64 2.07 45.42 3.41
2161 2205 8.982091 AGCTACATACGGATGTATATAGACAT 57.018 34.615 20.64 12.70 45.42 3.06
2192 2236 6.047511 AGTGTAGATTCACTCATTTGCTCT 57.952 37.500 0.00 0.00 44.07 4.09
2193 2237 5.873712 AGTGTAGATTCACTCATTTGCTCTG 59.126 40.000 0.00 0.00 44.07 3.35
2194 2238 5.641209 GTGTAGATTCACTCATTTGCTCTGT 59.359 40.000 0.00 0.00 35.68 3.41
2195 2239 6.813649 GTGTAGATTCACTCATTTGCTCTGTA 59.186 38.462 0.00 0.00 35.68 2.74
2196 2240 7.493971 GTGTAGATTCACTCATTTGCTCTGTAT 59.506 37.037 0.00 0.00 35.68 2.29
2197 2241 6.922247 AGATTCACTCATTTGCTCTGTATG 57.078 37.500 0.00 0.00 0.00 2.39
2198 2242 6.413052 AGATTCACTCATTTGCTCTGTATGT 58.587 36.000 0.00 0.00 0.00 2.29
2199 2243 7.559486 AGATTCACTCATTTGCTCTGTATGTA 58.441 34.615 0.00 0.00 0.00 2.29
2200 2244 8.043113 AGATTCACTCATTTGCTCTGTATGTAA 58.957 33.333 0.00 0.00 0.00 2.41
2201 2245 8.743085 ATTCACTCATTTGCTCTGTATGTAAT 57.257 30.769 0.00 0.00 0.00 1.89
2202 2246 7.776933 TCACTCATTTGCTCTGTATGTAATC 57.223 36.000 0.00 0.00 0.00 1.75
2203 2247 6.763135 TCACTCATTTGCTCTGTATGTAATCC 59.237 38.462 0.00 0.00 0.00 3.01
2204 2248 5.755375 ACTCATTTGCTCTGTATGTAATCCG 59.245 40.000 0.00 0.00 0.00 4.18
2205 2249 4.511454 TCATTTGCTCTGTATGTAATCCGC 59.489 41.667 0.00 0.00 0.00 5.54
2206 2250 3.535280 TTGCTCTGTATGTAATCCGCA 57.465 42.857 0.00 0.00 0.00 5.69
2207 2251 3.751479 TGCTCTGTATGTAATCCGCAT 57.249 42.857 0.00 0.00 0.00 4.73
2208 2252 4.071961 TGCTCTGTATGTAATCCGCATT 57.928 40.909 0.00 0.00 0.00 3.56
2209 2253 3.809279 TGCTCTGTATGTAATCCGCATTG 59.191 43.478 0.00 0.00 0.00 2.82
2210 2254 3.187227 GCTCTGTATGTAATCCGCATTGG 59.813 47.826 0.00 0.00 40.09 3.16
2211 2255 3.738982 TCTGTATGTAATCCGCATTGGG 58.261 45.455 0.00 0.00 38.76 4.12
2212 2256 3.389656 TCTGTATGTAATCCGCATTGGGA 59.610 43.478 1.69 0.00 41.17 4.37
2213 2257 3.472652 TGTATGTAATCCGCATTGGGAC 58.527 45.455 1.69 0.00 39.34 4.46
2214 2258 1.981256 ATGTAATCCGCATTGGGACC 58.019 50.000 1.69 0.00 39.34 4.46
2215 2259 0.916086 TGTAATCCGCATTGGGACCT 59.084 50.000 1.69 0.00 39.34 3.85
2216 2260 1.134220 TGTAATCCGCATTGGGACCTC 60.134 52.381 1.69 0.00 39.34 3.85
2217 2261 1.141053 GTAATCCGCATTGGGACCTCT 59.859 52.381 1.69 0.00 39.34 3.69
2218 2262 1.507140 AATCCGCATTGGGACCTCTA 58.493 50.000 1.69 0.00 39.34 2.43
2219 2263 1.734655 ATCCGCATTGGGACCTCTAT 58.265 50.000 1.69 0.00 39.34 1.98
2220 2264 2.391926 TCCGCATTGGGACCTCTATA 57.608 50.000 1.69 0.00 38.76 1.31
2221 2265 2.684943 TCCGCATTGGGACCTCTATAA 58.315 47.619 1.69 0.00 38.76 0.98
2222 2266 3.042682 TCCGCATTGGGACCTCTATAAA 58.957 45.455 1.69 0.00 38.76 1.40
2223 2267 3.071023 TCCGCATTGGGACCTCTATAAAG 59.929 47.826 1.69 0.00 38.76 1.85
2224 2268 2.808543 CGCATTGGGACCTCTATAAAGC 59.191 50.000 0.00 0.00 0.00 3.51
2225 2269 3.149981 GCATTGGGACCTCTATAAAGCC 58.850 50.000 0.00 0.00 0.00 4.35
2226 2270 3.181439 GCATTGGGACCTCTATAAAGCCT 60.181 47.826 0.00 0.00 0.00 4.58
2227 2271 4.689983 GCATTGGGACCTCTATAAAGCCTT 60.690 45.833 0.00 0.00 0.00 4.35
2228 2272 5.456186 GCATTGGGACCTCTATAAAGCCTTA 60.456 44.000 0.00 0.00 0.00 2.69
2229 2273 6.748332 GCATTGGGACCTCTATAAAGCCTTAT 60.748 42.308 0.00 0.00 0.00 1.73
2230 2274 7.528881 GCATTGGGACCTCTATAAAGCCTTATA 60.529 40.741 0.00 0.00 0.00 0.98
2231 2275 8.552296 CATTGGGACCTCTATAAAGCCTTATAT 58.448 37.037 0.00 0.00 31.11 0.86
2232 2276 8.520119 TTGGGACCTCTATAAAGCCTTATATT 57.480 34.615 0.00 0.00 31.11 1.28
2233 2277 8.520119 TGGGACCTCTATAAAGCCTTATATTT 57.480 34.615 0.00 0.00 31.11 1.40
2234 2278 9.624037 TGGGACCTCTATAAAGCCTTATATTTA 57.376 33.333 0.00 0.00 31.11 1.40
2244 2288 5.485209 AGCCTTATATTTAGGAACGGAGG 57.515 43.478 7.56 0.00 34.56 4.30
2245 2289 4.286291 AGCCTTATATTTAGGAACGGAGGG 59.714 45.833 7.56 0.00 34.56 4.30
2246 2290 4.285260 GCCTTATATTTAGGAACGGAGGGA 59.715 45.833 7.56 0.00 34.56 4.20
2247 2291 5.569026 GCCTTATATTTAGGAACGGAGGGAG 60.569 48.000 7.56 0.00 34.56 4.30
2248 2292 5.479124 TTATATTTAGGAACGGAGGGAGC 57.521 43.478 0.00 0.00 0.00 4.70
2280 2324 3.895232 AGCTTTAGCCATCTCTTTCGA 57.105 42.857 0.00 0.00 43.38 3.71
2282 2326 3.449018 AGCTTTAGCCATCTCTTTCGAGA 59.551 43.478 0.00 0.00 45.53 4.04
2291 2335 3.667497 TCTCTTTCGAGACTGCATGTT 57.333 42.857 0.00 0.00 41.26 2.71
2292 2336 4.783764 TCTCTTTCGAGACTGCATGTTA 57.216 40.909 0.00 0.00 41.26 2.41
2293 2337 5.330455 TCTCTTTCGAGACTGCATGTTAT 57.670 39.130 0.00 0.00 41.26 1.89
2294 2338 5.724328 TCTCTTTCGAGACTGCATGTTATT 58.276 37.500 0.00 0.00 41.26 1.40
2295 2339 6.166279 TCTCTTTCGAGACTGCATGTTATTT 58.834 36.000 0.00 0.00 41.26 1.40
2296 2340 7.320399 TCTCTTTCGAGACTGCATGTTATTTA 58.680 34.615 0.00 0.00 41.26 1.40
2297 2341 7.275779 TCTCTTTCGAGACTGCATGTTATTTAC 59.724 37.037 0.00 0.00 41.26 2.01
2298 2342 5.696260 TTCGAGACTGCATGTTATTTACG 57.304 39.130 0.00 0.00 0.00 3.18
2299 2343 4.109766 TCGAGACTGCATGTTATTTACGG 58.890 43.478 0.00 0.00 0.00 4.02
2334 2378 7.715249 TGTATTACTGAATAGAACTGATTGGGC 59.285 37.037 0.00 0.00 0.00 5.36
2335 2379 3.535561 ACTGAATAGAACTGATTGGGCG 58.464 45.455 0.00 0.00 0.00 6.13
2336 2380 2.288666 TGAATAGAACTGATTGGGCGC 58.711 47.619 0.00 0.00 0.00 6.53
2337 2381 2.288666 GAATAGAACTGATTGGGCGCA 58.711 47.619 10.83 0.00 0.00 6.09
2350 2394 3.503363 GCGCAGGTGCAGGATCAC 61.503 66.667 0.30 0.00 42.21 3.06
2371 2415 2.224233 CGAGGCACATGGATCTCATCTT 60.224 50.000 0.00 0.00 32.92 2.40
2394 2438 4.845796 TCTCCATCAAGCATATGGGTCATA 59.154 41.667 4.56 0.00 43.52 2.15
2395 2439 4.910195 TCCATCAAGCATATGGGTCATAC 58.090 43.478 4.56 0.00 43.52 2.39
2410 2454 5.133660 TGGGTCATACTATGCATTTTAGGGT 59.866 40.000 3.54 0.00 0.00 4.34
2441 2485 1.616374 GCTGGCTCCTACTATCCTGTC 59.384 57.143 0.00 0.00 0.00 3.51
2462 2506 1.185618 TCACAGTAGCTGGCGTTCCT 61.186 55.000 0.00 0.00 35.51 3.36
2498 2542 2.549754 GCCATAGTCAATGCGCTTACAT 59.450 45.455 9.73 0.00 33.92 2.29
2501 2545 4.319046 CCATAGTCAATGCGCTTACATGTC 60.319 45.833 9.73 0.00 33.92 3.06
2502 2546 2.698803 AGTCAATGCGCTTACATGTCA 58.301 42.857 9.73 0.00 0.00 3.58
2503 2547 3.073678 AGTCAATGCGCTTACATGTCAA 58.926 40.909 9.73 0.00 0.00 3.18
2504 2548 3.125829 AGTCAATGCGCTTACATGTCAAG 59.874 43.478 9.73 6.18 0.00 3.02
2505 2549 2.419673 TCAATGCGCTTACATGTCAAGG 59.580 45.455 9.73 1.39 0.00 3.61
2506 2550 1.382522 ATGCGCTTACATGTCAAGGG 58.617 50.000 9.73 18.90 38.57 3.95
2507 2551 0.323302 TGCGCTTACATGTCAAGGGA 59.677 50.000 23.54 13.07 37.98 4.20
2508 2552 1.271108 TGCGCTTACATGTCAAGGGAA 60.271 47.619 23.54 16.39 37.98 3.97
2509 2553 1.398390 GCGCTTACATGTCAAGGGAAG 59.602 52.381 23.54 14.39 37.98 3.46
2510 2554 1.398390 CGCTTACATGTCAAGGGAAGC 59.602 52.381 15.67 15.67 37.98 3.86
2511 2555 2.716217 GCTTACATGTCAAGGGAAGCT 58.284 47.619 17.57 0.00 37.05 3.74
2512 2556 2.421424 GCTTACATGTCAAGGGAAGCTG 59.579 50.000 17.57 0.00 37.05 4.24
2513 2557 2.113860 TACATGTCAAGGGAAGCTGC 57.886 50.000 0.00 0.00 0.00 5.25
2514 2558 0.610232 ACATGTCAAGGGAAGCTGCC 60.610 55.000 0.16 0.16 0.00 4.85
2515 2559 0.323178 CATGTCAAGGGAAGCTGCCT 60.323 55.000 11.64 0.00 41.29 4.75
2519 2563 4.507969 AAGGGAAGCTGCCTTGTG 57.492 55.556 11.64 0.00 46.93 3.33
2520 2564 1.538666 AAGGGAAGCTGCCTTGTGT 59.461 52.632 11.64 0.00 46.93 3.72
2521 2565 0.106015 AAGGGAAGCTGCCTTGTGTT 60.106 50.000 11.64 0.00 46.93 3.32
2522 2566 0.538287 AGGGAAGCTGCCTTGTGTTC 60.538 55.000 11.64 0.00 32.70 3.18
2523 2567 1.527433 GGGAAGCTGCCTTGTGTTCC 61.527 60.000 11.64 7.37 36.68 3.62
2524 2568 0.823356 GGAAGCTGCCTTGTGTTCCA 60.823 55.000 2.27 0.00 37.27 3.53
2525 2569 0.312102 GAAGCTGCCTTGTGTTCCAC 59.688 55.000 0.00 0.00 34.56 4.02
2526 2570 1.109323 AAGCTGCCTTGTGTTCCACC 61.109 55.000 0.00 0.00 32.73 4.61
2527 2571 1.827789 GCTGCCTTGTGTTCCACCA 60.828 57.895 0.00 0.00 32.73 4.17
2528 2572 2.032981 CTGCCTTGTGTTCCACCAC 58.967 57.895 0.00 0.00 32.73 4.16
2529 2573 1.454847 TGCCTTGTGTTCCACCACC 60.455 57.895 0.00 0.00 34.35 4.61
2530 2574 2.551912 GCCTTGTGTTCCACCACCG 61.552 63.158 0.00 0.00 34.35 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.832445 ACAATTTCTAAAGACAAAGTCACTCTA 57.168 29.630 0.00 0.00 34.60 2.43
3 4 8.612619 TCACAATTTCTAAAGACAAAGTCACTC 58.387 33.333 0.00 0.00 34.60 3.51
5 6 9.567848 TTTCACAATTTCTAAAGACAAAGTCAC 57.432 29.630 0.00 0.00 34.60 3.67
24 25 8.431593 GCAGTATTTCGCATAAAAATTTCACAA 58.568 29.630 0.00 0.00 0.00 3.33
25 26 7.812191 AGCAGTATTTCGCATAAAAATTTCACA 59.188 29.630 0.00 0.00 0.00 3.58
26 27 8.173321 AGCAGTATTTCGCATAAAAATTTCAC 57.827 30.769 0.00 0.00 0.00 3.18
31 32 9.669353 CTGAATAGCAGTATTTCGCATAAAAAT 57.331 29.630 0.00 0.00 39.85 1.82
50 51 1.233019 CCGATTGGCTGGCTGAATAG 58.767 55.000 2.00 0.00 0.00 1.73
51 52 0.179020 CCCGATTGGCTGGCTGAATA 60.179 55.000 2.00 0.00 0.00 1.75
52 53 1.454479 CCCGATTGGCTGGCTGAAT 60.454 57.895 2.00 0.00 0.00 2.57
53 54 2.045045 CCCGATTGGCTGGCTGAA 60.045 61.111 2.00 0.00 0.00 3.02
62 63 3.496131 CGTTCCACGCCCGATTGG 61.496 66.667 0.00 0.00 33.65 3.16
79 80 2.599082 GCATACAGACAACACGCTAGAC 59.401 50.000 0.00 0.00 0.00 2.59
80 81 2.416836 GGCATACAGACAACACGCTAGA 60.417 50.000 0.00 0.00 0.00 2.43
81 82 1.927174 GGCATACAGACAACACGCTAG 59.073 52.381 0.00 0.00 0.00 3.42
82 83 1.273886 TGGCATACAGACAACACGCTA 59.726 47.619 0.00 0.00 26.55 4.26
83 84 0.034756 TGGCATACAGACAACACGCT 59.965 50.000 0.00 0.00 26.55 5.07
84 85 1.086696 ATGGCATACAGACAACACGC 58.913 50.000 0.00 0.00 39.98 5.34
85 86 2.076100 ACATGGCATACAGACAACACG 58.924 47.619 0.00 0.00 39.98 4.49
86 87 2.414559 GCACATGGCATACAGACAACAC 60.415 50.000 0.00 0.00 39.98 3.32
87 88 1.811965 GCACATGGCATACAGACAACA 59.188 47.619 0.00 0.00 39.98 3.33
88 89 2.549633 GCACATGGCATACAGACAAC 57.450 50.000 0.00 0.00 39.98 3.32
99 100 1.134461 AGATGACTCAGAGCACATGGC 60.134 52.381 13.36 0.00 45.30 4.40
100 101 2.552031 CAGATGACTCAGAGCACATGG 58.448 52.381 13.36 4.59 0.00 3.66
101 102 1.934525 GCAGATGACTCAGAGCACATG 59.065 52.381 13.36 8.66 0.00 3.21
102 103 1.832366 AGCAGATGACTCAGAGCACAT 59.168 47.619 9.59 9.59 0.00 3.21
103 104 1.264295 AGCAGATGACTCAGAGCACA 58.736 50.000 0.00 0.00 0.00 4.57
104 105 2.165234 TGTAGCAGATGACTCAGAGCAC 59.835 50.000 0.00 0.00 0.00 4.40
105 106 2.450476 TGTAGCAGATGACTCAGAGCA 58.550 47.619 0.00 0.00 0.00 4.26
106 107 3.731652 ATGTAGCAGATGACTCAGAGC 57.268 47.619 0.00 0.00 0.00 4.09
107 108 5.105797 GGGATATGTAGCAGATGACTCAGAG 60.106 48.000 0.00 0.00 0.00 3.35
108 109 4.769488 GGGATATGTAGCAGATGACTCAGA 59.231 45.833 0.00 0.00 0.00 3.27
109 110 4.771577 AGGGATATGTAGCAGATGACTCAG 59.228 45.833 0.00 0.00 0.00 3.35
110 111 4.745351 AGGGATATGTAGCAGATGACTCA 58.255 43.478 0.00 0.00 0.00 3.41
111 112 5.477510 CAAGGGATATGTAGCAGATGACTC 58.522 45.833 0.00 0.00 0.00 3.36
112 113 4.262808 GCAAGGGATATGTAGCAGATGACT 60.263 45.833 0.00 0.00 0.00 3.41
113 114 3.999663 GCAAGGGATATGTAGCAGATGAC 59.000 47.826 0.00 0.00 0.00 3.06
114 115 3.906218 AGCAAGGGATATGTAGCAGATGA 59.094 43.478 0.00 0.00 0.00 2.92
115 116 4.001652 CAGCAAGGGATATGTAGCAGATG 58.998 47.826 0.00 0.00 0.00 2.90
116 117 3.558746 GCAGCAAGGGATATGTAGCAGAT 60.559 47.826 0.00 0.00 0.00 2.90
117 118 2.224378 GCAGCAAGGGATATGTAGCAGA 60.224 50.000 0.00 0.00 0.00 4.26
118 119 2.149578 GCAGCAAGGGATATGTAGCAG 58.850 52.381 0.00 0.00 0.00 4.24
119 120 1.490069 TGCAGCAAGGGATATGTAGCA 59.510 47.619 0.00 0.00 0.00 3.49
120 121 2.260844 TGCAGCAAGGGATATGTAGC 57.739 50.000 0.00 0.00 0.00 3.58
121 122 3.812053 GTCTTGCAGCAAGGGATATGTAG 59.188 47.826 30.71 6.21 41.33 2.74
122 123 3.741075 CGTCTTGCAGCAAGGGATATGTA 60.741 47.826 30.71 9.76 41.33 2.29
123 124 2.648059 GTCTTGCAGCAAGGGATATGT 58.352 47.619 30.71 0.00 41.33 2.29
124 125 1.600957 CGTCTTGCAGCAAGGGATATG 59.399 52.381 30.71 15.54 41.33 1.78
125 126 1.959042 CGTCTTGCAGCAAGGGATAT 58.041 50.000 30.71 0.00 41.33 1.63
126 127 0.744414 GCGTCTTGCAGCAAGGGATA 60.744 55.000 30.71 12.25 45.45 2.59
127 128 2.042831 GCGTCTTGCAGCAAGGGAT 61.043 57.895 30.71 0.00 45.45 3.85
128 129 2.669569 GCGTCTTGCAGCAAGGGA 60.670 61.111 30.71 13.55 45.45 4.20
129 130 4.093952 CGCGTCTTGCAGCAAGGG 62.094 66.667 30.71 23.66 46.97 3.95
130 131 4.093952 CCGCGTCTTGCAGCAAGG 62.094 66.667 30.71 18.76 46.97 3.61
131 132 4.093952 CCCGCGTCTTGCAGCAAG 62.094 66.667 26.87 26.87 46.97 4.01
145 146 4.639171 GTTTGTGTTGCGCCCCCG 62.639 66.667 4.18 0.00 37.57 5.73
146 147 3.498401 CTGTTTGTGTTGCGCCCCC 62.498 63.158 4.18 0.00 0.00 5.40
147 148 2.027460 CTGTTTGTGTTGCGCCCC 59.973 61.111 4.18 0.00 0.00 5.80
148 149 1.805428 ATCCTGTTTGTGTTGCGCCC 61.805 55.000 4.18 0.00 0.00 6.13
149 150 0.664166 CATCCTGTTTGTGTTGCGCC 60.664 55.000 4.18 0.00 0.00 6.53
150 151 0.030638 ACATCCTGTTTGTGTTGCGC 59.969 50.000 0.00 0.00 0.00 6.09
151 152 2.665519 GCTACATCCTGTTTGTGTTGCG 60.666 50.000 0.00 0.00 35.59 4.85
152 153 2.665519 CGCTACATCCTGTTTGTGTTGC 60.666 50.000 0.00 0.00 39.86 4.17
153 154 2.665519 GCGCTACATCCTGTTTGTGTTG 60.666 50.000 0.00 0.00 0.00 3.33
154 155 1.535462 GCGCTACATCCTGTTTGTGTT 59.465 47.619 0.00 0.00 0.00 3.32
155 156 1.156736 GCGCTACATCCTGTTTGTGT 58.843 50.000 0.00 0.00 0.00 3.72
156 157 1.155889 TGCGCTACATCCTGTTTGTG 58.844 50.000 9.73 0.00 0.00 3.33
157 158 1.806542 CTTGCGCTACATCCTGTTTGT 59.193 47.619 9.73 0.00 0.00 2.83
158 159 1.131126 CCTTGCGCTACATCCTGTTTG 59.869 52.381 9.73 0.00 0.00 2.93
159 160 1.453155 CCTTGCGCTACATCCTGTTT 58.547 50.000 9.73 0.00 0.00 2.83
160 161 1.026718 GCCTTGCGCTACATCCTGTT 61.027 55.000 9.73 0.00 0.00 3.16
161 162 1.450312 GCCTTGCGCTACATCCTGT 60.450 57.895 9.73 0.00 0.00 4.00
162 163 3.414272 GCCTTGCGCTACATCCTG 58.586 61.111 9.73 0.00 0.00 3.86
173 174 0.932399 CAAGTTGCAACAAGCCTTGC 59.068 50.000 30.11 0.83 45.80 4.01
174 175 0.932399 GCAAGTTGCAACAAGCCTTG 59.068 50.000 30.11 23.82 44.26 3.61
175 176 0.528249 CGCAAGTTGCAACAAGCCTT 60.528 50.000 30.11 13.31 45.36 4.35
176 177 1.066257 CGCAAGTTGCAACAAGCCT 59.934 52.632 30.11 7.43 45.36 4.58
177 178 0.527385 TTCGCAAGTTGCAACAAGCC 60.527 50.000 30.11 14.41 45.36 4.35
178 179 1.256117 CTTTCGCAAGTTGCAACAAGC 59.744 47.619 30.11 28.19 45.36 4.01
179 180 1.256117 GCTTTCGCAAGTTGCAACAAG 59.744 47.619 30.11 22.52 45.36 3.16
180 181 1.135141 AGCTTTCGCAAGTTGCAACAA 60.135 42.857 30.11 13.31 45.36 2.83
181 182 0.455410 AGCTTTCGCAAGTTGCAACA 59.545 45.000 30.11 7.43 45.36 3.33
182 183 1.123655 GAGCTTTCGCAAGTTGCAAC 58.876 50.000 26.56 22.17 45.36 4.17
183 184 0.737804 TGAGCTTTCGCAAGTTGCAA 59.262 45.000 26.56 16.58 45.36 4.08
184 185 0.953727 ATGAGCTTTCGCAAGTTGCA 59.046 45.000 26.56 11.72 45.36 4.08
185 186 1.981533 GAATGAGCTTTCGCAAGTTGC 59.018 47.619 18.18 18.18 40.69 4.17
186 187 2.236690 CGAATGAGCTTTCGCAAGTTG 58.763 47.619 7.56 0.00 41.61 3.16
187 188 2.601481 CGAATGAGCTTTCGCAAGTT 57.399 45.000 7.56 0.00 41.61 2.66
198 199 0.105593 TCTCCCATGAGCGAATGAGC 59.894 55.000 0.00 0.00 38.58 4.26
199 200 1.685517 TCTCTCCCATGAGCGAATGAG 59.314 52.381 0.00 0.00 38.58 2.90
200 201 1.780503 TCTCTCCCATGAGCGAATGA 58.219 50.000 0.00 0.00 38.58 2.57
201 202 2.686235 GATCTCTCCCATGAGCGAATG 58.314 52.381 0.00 0.00 36.04 2.67
202 203 1.271934 CGATCTCTCCCATGAGCGAAT 59.728 52.381 0.00 0.00 43.56 3.34
203 204 0.670706 CGATCTCTCCCATGAGCGAA 59.329 55.000 0.00 0.00 43.56 4.70
204 205 1.175347 CCGATCTCTCCCATGAGCGA 61.175 60.000 0.00 0.00 43.56 4.93
205 206 1.175347 TCCGATCTCTCCCATGAGCG 61.175 60.000 0.00 0.00 41.05 5.03
206 207 0.316841 GTCCGATCTCTCCCATGAGC 59.683 60.000 0.00 0.00 38.58 4.26
207 208 1.612950 CTGTCCGATCTCTCCCATGAG 59.387 57.143 0.00 0.00 40.17 2.90
208 209 1.697284 CTGTCCGATCTCTCCCATGA 58.303 55.000 0.00 0.00 0.00 3.07
209 210 0.033228 GCTGTCCGATCTCTCCCATG 59.967 60.000 0.00 0.00 0.00 3.66
210 211 0.105760 AGCTGTCCGATCTCTCCCAT 60.106 55.000 0.00 0.00 0.00 4.00
211 212 1.039785 CAGCTGTCCGATCTCTCCCA 61.040 60.000 5.25 0.00 0.00 4.37
212 213 1.040339 ACAGCTGTCCGATCTCTCCC 61.040 60.000 15.25 0.00 0.00 4.30
213 214 0.383949 GACAGCTGTCCGATCTCTCC 59.616 60.000 32.55 7.33 39.07 3.71
214 215 0.028770 CGACAGCTGTCCGATCTCTC 59.971 60.000 35.07 13.04 41.86 3.20
215 216 1.999071 GCGACAGCTGTCCGATCTCT 61.999 60.000 35.07 4.21 41.86 3.10
216 217 1.587613 GCGACAGCTGTCCGATCTC 60.588 63.158 35.07 14.44 41.86 2.75
217 218 1.670949 ATGCGACAGCTGTCCGATCT 61.671 55.000 35.07 16.47 45.42 2.75
218 219 0.030773 TATGCGACAGCTGTCCGATC 59.969 55.000 35.07 23.05 45.42 3.69
219 220 0.031314 CTATGCGACAGCTGTCCGAT 59.969 55.000 35.07 28.04 45.42 4.18
220 221 1.029947 TCTATGCGACAGCTGTCCGA 61.030 55.000 35.07 24.17 45.42 4.55
221 222 0.179137 TTCTATGCGACAGCTGTCCG 60.179 55.000 35.07 29.41 45.42 4.79
222 223 2.010145 TTTCTATGCGACAGCTGTCC 57.990 50.000 35.07 27.73 45.42 4.02
223 224 3.254060 TCTTTTCTATGCGACAGCTGTC 58.746 45.455 32.73 32.73 45.42 3.51
224 225 3.319137 TCTTTTCTATGCGACAGCTGT 57.681 42.857 21.88 21.88 45.42 4.40
225 226 4.083855 TGTTTCTTTTCTATGCGACAGCTG 60.084 41.667 13.48 13.48 45.42 4.24
226 227 4.065088 TGTTTCTTTTCTATGCGACAGCT 58.935 39.130 0.00 0.00 45.42 4.24
227 228 4.404507 TGTTTCTTTTCTATGCGACAGC 57.595 40.909 0.00 0.00 45.41 4.40
228 229 4.840772 CGTTGTTTCTTTTCTATGCGACAG 59.159 41.667 0.00 0.00 0.00 3.51
229 230 4.319190 CCGTTGTTTCTTTTCTATGCGACA 60.319 41.667 0.00 0.00 0.00 4.35
230 231 4.148891 CCGTTGTTTCTTTTCTATGCGAC 58.851 43.478 0.00 0.00 0.00 5.19
231 232 3.364565 GCCGTTGTTTCTTTTCTATGCGA 60.365 43.478 0.00 0.00 0.00 5.10
232 233 2.908626 GCCGTTGTTTCTTTTCTATGCG 59.091 45.455 0.00 0.00 0.00 4.73
233 234 4.159120 GAGCCGTTGTTTCTTTTCTATGC 58.841 43.478 0.00 0.00 0.00 3.14
234 235 5.147162 GTGAGCCGTTGTTTCTTTTCTATG 58.853 41.667 0.00 0.00 0.00 2.23
235 236 4.819630 TGTGAGCCGTTGTTTCTTTTCTAT 59.180 37.500 0.00 0.00 0.00 1.98
236 237 4.193090 TGTGAGCCGTTGTTTCTTTTCTA 58.807 39.130 0.00 0.00 0.00 2.10
237 238 3.013921 TGTGAGCCGTTGTTTCTTTTCT 58.986 40.909 0.00 0.00 0.00 2.52
238 239 3.414549 TGTGAGCCGTTGTTTCTTTTC 57.585 42.857 0.00 0.00 0.00 2.29
239 240 3.442273 TCTTGTGAGCCGTTGTTTCTTTT 59.558 39.130 0.00 0.00 0.00 2.27
240 241 3.013921 TCTTGTGAGCCGTTGTTTCTTT 58.986 40.909 0.00 0.00 0.00 2.52
241 242 2.614057 CTCTTGTGAGCCGTTGTTTCTT 59.386 45.455 0.00 0.00 33.12 2.52
242 243 2.213499 CTCTTGTGAGCCGTTGTTTCT 58.787 47.619 0.00 0.00 33.12 2.52
243 244 1.264288 CCTCTTGTGAGCCGTTGTTTC 59.736 52.381 0.00 0.00 38.93 2.78
244 245 1.308998 CCTCTTGTGAGCCGTTGTTT 58.691 50.000 0.00 0.00 38.93 2.83
245 246 0.535102 CCCTCTTGTGAGCCGTTGTT 60.535 55.000 0.00 0.00 38.93 2.83
246 247 1.071471 CCCTCTTGTGAGCCGTTGT 59.929 57.895 0.00 0.00 38.93 3.32
247 248 1.672356 CCCCTCTTGTGAGCCGTTG 60.672 63.158 0.00 0.00 38.93 4.10
248 249 1.841556 TCCCCTCTTGTGAGCCGTT 60.842 57.895 0.00 0.00 38.93 4.44
249 250 2.203788 TCCCCTCTTGTGAGCCGT 60.204 61.111 0.00 0.00 38.93 5.68
250 251 2.266055 GTCCCCTCTTGTGAGCCG 59.734 66.667 0.00 0.00 38.93 5.52
251 252 2.671682 GGTCCCCTCTTGTGAGCC 59.328 66.667 0.00 0.00 38.93 4.70
252 253 2.266055 CGGTCCCCTCTTGTGAGC 59.734 66.667 0.00 0.00 38.93 4.26
253 254 2.660064 CCCGGTCCCCTCTTGTGAG 61.660 68.421 0.00 0.00 39.92 3.51
254 255 2.606519 CCCGGTCCCCTCTTGTGA 60.607 66.667 0.00 0.00 0.00 3.58
255 256 4.410400 GCCCGGTCCCCTCTTGTG 62.410 72.222 0.00 0.00 0.00 3.33
305 306 4.759096 CAGCTTTTTCGCGCCGGG 62.759 66.667 2.18 0.00 34.40 5.73
306 307 2.177654 TTACAGCTTTTTCGCGCCGG 62.178 55.000 0.00 0.00 34.40 6.13
307 308 0.384974 TTTACAGCTTTTTCGCGCCG 60.385 50.000 0.00 0.00 34.40 6.46
308 309 1.069500 TCTTTACAGCTTTTTCGCGCC 60.069 47.619 0.00 0.00 34.40 6.53
309 310 2.309898 TCTTTACAGCTTTTTCGCGC 57.690 45.000 0.00 0.00 34.40 6.86
310 311 6.504799 GCAATTATCTTTACAGCTTTTTCGCG 60.505 38.462 0.00 0.00 34.40 5.87
311 312 6.307800 TGCAATTATCTTTACAGCTTTTTCGC 59.692 34.615 0.00 0.00 0.00 4.70
312 313 7.795431 TGCAATTATCTTTACAGCTTTTTCG 57.205 32.000 0.00 0.00 0.00 3.46
313 314 8.155923 CGTTGCAATTATCTTTACAGCTTTTTC 58.844 33.333 0.59 0.00 0.00 2.29
314 315 7.865385 TCGTTGCAATTATCTTTACAGCTTTTT 59.135 29.630 0.59 0.00 0.00 1.94
315 316 7.367285 TCGTTGCAATTATCTTTACAGCTTTT 58.633 30.769 0.59 0.00 0.00 2.27
316 317 6.908825 TCGTTGCAATTATCTTTACAGCTTT 58.091 32.000 0.59 0.00 0.00 3.51
317 318 6.403636 CCTCGTTGCAATTATCTTTACAGCTT 60.404 38.462 0.59 0.00 0.00 3.74
318 319 5.065218 CCTCGTTGCAATTATCTTTACAGCT 59.935 40.000 0.59 0.00 0.00 4.24
319 320 5.266242 CCTCGTTGCAATTATCTTTACAGC 58.734 41.667 0.59 0.00 0.00 4.40
320 321 5.065218 AGCCTCGTTGCAATTATCTTTACAG 59.935 40.000 0.59 0.00 0.00 2.74
324 325 3.063997 CGAGCCTCGTTGCAATTATCTTT 59.936 43.478 5.82 0.00 34.72 2.52
339 340 2.480845 ACACTTTACAACACGAGCCTC 58.519 47.619 0.00 0.00 0.00 4.70
357 358 0.941542 GCCTTGTGTTACGCTCAACA 59.058 50.000 0.00 0.00 36.08 3.33
361 362 1.226746 ACAAGCCTTGTGTTACGCTC 58.773 50.000 9.77 0.00 43.48 5.03
362 363 1.333619 CAACAAGCCTTGTGTTACGCT 59.666 47.619 11.51 0.00 44.59 5.07
372 373 1.230324 GAGTCTTCGCAACAAGCCTT 58.770 50.000 0.00 0.00 41.38 4.35
384 385 0.247736 ATGTGAGCCACCGAGTCTTC 59.752 55.000 3.33 0.00 32.73 2.87
388 389 1.892819 CTCCATGTGAGCCACCGAGT 61.893 60.000 3.33 0.00 33.47 4.18
401 402 3.117776 TGGAGTCATTTGATCCCTCCATG 60.118 47.826 12.11 0.00 45.05 3.66
402 403 3.125656 TGGAGTCATTTGATCCCTCCAT 58.874 45.455 12.11 0.00 45.05 3.41
404 405 3.749226 GATGGAGTCATTTGATCCCTCC 58.251 50.000 8.17 8.17 41.69 4.30
438 439 2.991434 TCCTATAAGATCGACTGCGC 57.009 50.000 0.00 0.00 37.46 6.09
439 440 5.904630 CGATAATCCTATAAGATCGACTGCG 59.095 44.000 0.00 0.00 41.42 5.18
442 443 6.258287 CGGACGATAATCCTATAAGATCGACT 59.742 42.308 9.34 0.00 41.42 4.18
512 513 8.275632 CGTACATGACATGTGACAATTATTAGG 58.724 37.037 27.66 8.29 44.60 2.69
515 516 7.465916 GCTCGTACATGACATGTGACAATTATT 60.466 37.037 27.66 2.59 44.60 1.40
533 534 4.061596 TCAATTTGTCATGTGCTCGTACA 58.938 39.130 0.00 0.00 34.63 2.90
582 583 1.289160 ACCTAAAGCTGCCATCCTCA 58.711 50.000 0.00 0.00 0.00 3.86
590 591 3.113046 GCTTGCAACCTAAAGCTGC 57.887 52.632 0.00 0.00 44.33 5.25
632 633 3.507786 ACGGCAAGTTTCTGTCAAAAAC 58.492 40.909 0.00 0.00 36.97 2.43
651 652 5.901884 GGATGTTAAATTTCAGCGACATACG 59.098 40.000 0.00 0.00 45.66 3.06
654 655 5.895636 TGGATGTTAAATTTCAGCGACAT 57.104 34.783 0.00 0.00 0.00 3.06
669 670 3.610040 TTCTAGTCACGCATGGATGTT 57.390 42.857 0.00 0.00 0.00 2.71
670 671 3.827008 ATTCTAGTCACGCATGGATGT 57.173 42.857 0.00 0.00 0.00 3.06
686 687 5.163713 GCCTAAGCTTTTCGATGACAATTCT 60.164 40.000 3.20 0.00 35.50 2.40
703 704 3.873910 TGAAAGTGTCATAGGCCTAAGC 58.126 45.455 18.42 10.39 38.76 3.09
716 738 5.874261 CACAGTTTTTCCCAAATGAAAGTGT 59.126 36.000 0.00 0.00 42.95 3.55
737 759 5.444176 TGTATATGTTGAATCCATGCCACA 58.556 37.500 0.00 0.00 0.00 4.17
738 760 5.764686 TCTGTATATGTTGAATCCATGCCAC 59.235 40.000 0.00 0.00 0.00 5.01
825 856 3.185188 CCACGAAGATATGGCTGAATTCG 59.815 47.826 0.04 3.82 43.67 3.34
866 897 0.037232 CTCTTGTTCTCCCCGGTGTC 60.037 60.000 0.00 0.00 0.00 3.67
877 908 4.330347 GGAATACGCCTTCTTCTCTTGTTC 59.670 45.833 0.00 0.00 0.00 3.18
1048 1084 1.160870 ATGTGGGAGTGGGAGTGGA 59.839 57.895 0.00 0.00 0.00 4.02
1072 1108 2.353610 TTAGGGCCTCGGTCCGTTC 61.354 63.158 10.74 1.49 46.16 3.95
1089 1125 1.302511 GTGGGTCAGGATGTGCGTT 60.303 57.895 0.00 0.00 37.40 4.84
1092 1128 2.044946 GGGTGGGTCAGGATGTGC 60.045 66.667 0.00 0.00 37.40 4.57
1227 1263 1.536943 GCAGGAAGACGGAGGTGAGT 61.537 60.000 0.00 0.00 0.00 3.41
1565 1601 3.466836 CAGTCCACAGTTAAAGCACTCA 58.533 45.455 0.00 0.00 0.00 3.41
1570 1606 0.110192 GCGCAGTCCACAGTTAAAGC 60.110 55.000 0.30 0.00 0.00 3.51
1592 1628 2.618053 ACTACCACACTATTTCAGCGC 58.382 47.619 0.00 0.00 0.00 5.92
1635 1672 3.004734 GCAAGCTGCAGTCGACGAC 62.005 63.158 20.25 20.25 44.26 4.34
1657 1694 4.226620 GGTTCTACCCAAATAGACTCCCAA 59.773 45.833 0.00 0.00 30.75 4.12
1659 1696 4.038633 AGGTTCTACCCAAATAGACTCCC 58.961 47.826 0.00 0.00 39.75 4.30
1662 1699 3.118738 CGCAGGTTCTACCCAAATAGACT 60.119 47.826 0.00 0.00 39.75 3.24
1663 1700 3.118884 TCGCAGGTTCTACCCAAATAGAC 60.119 47.826 0.00 0.00 39.75 2.59
1664 1701 3.101437 TCGCAGGTTCTACCCAAATAGA 58.899 45.455 0.00 0.00 39.75 1.98
1672 1710 3.153024 TGCATTCGCAGGTTCTACC 57.847 52.632 0.00 0.00 45.36 3.18
1687 1725 6.573664 AAAGTTGTAACAGATAGCATTGCA 57.426 33.333 11.91 0.00 0.00 4.08
1749 1792 7.047891 TCGTGGCATCTATCTAAAGATTTTGT 58.952 34.615 0.00 0.00 33.87 2.83
1751 1794 9.778741 TTATCGTGGCATCTATCTAAAGATTTT 57.221 29.630 0.00 0.00 33.87 1.82
1754 1797 7.324178 GGTTATCGTGGCATCTATCTAAAGAT 58.676 38.462 0.00 0.00 36.64 2.40
1757 1800 5.466819 CGGTTATCGTGGCATCTATCTAAA 58.533 41.667 0.00 0.00 0.00 1.85
1769 1812 0.248289 ACTGGAACCGGTTATCGTGG 59.752 55.000 22.33 9.90 37.11 4.94
1780 1823 0.681733 TCTCACTGAGCACTGGAACC 59.318 55.000 0.62 0.00 0.00 3.62
1787 1830 1.086634 GGCGGATTCTCACTGAGCAC 61.087 60.000 0.62 0.00 0.00 4.40
1790 1833 3.526931 TTTAGGCGGATTCTCACTGAG 57.473 47.619 0.00 0.00 0.00 3.35
1791 1834 3.973206 TTTTAGGCGGATTCTCACTGA 57.027 42.857 0.00 0.00 0.00 3.41
1810 1853 5.964758 TGCTGTTTCTCACTGAACATTTTT 58.035 33.333 0.00 0.00 33.88 1.94
1811 1854 5.126061 ACTGCTGTTTCTCACTGAACATTTT 59.874 36.000 0.00 0.00 33.88 1.82
1812 1855 4.641989 ACTGCTGTTTCTCACTGAACATTT 59.358 37.500 0.00 0.00 33.88 2.32
1813 1856 4.202441 ACTGCTGTTTCTCACTGAACATT 58.798 39.130 0.00 0.00 33.88 2.71
1814 1857 3.812053 GACTGCTGTTTCTCACTGAACAT 59.188 43.478 0.00 0.00 33.88 2.71
1815 1858 3.198068 GACTGCTGTTTCTCACTGAACA 58.802 45.455 0.00 0.00 33.88 3.18
1816 1859 3.198068 TGACTGCTGTTTCTCACTGAAC 58.802 45.455 0.00 0.00 33.88 3.18
1817 1860 3.541996 TGACTGCTGTTTCTCACTGAA 57.458 42.857 0.00 0.00 0.00 3.02
1818 1861 3.541996 TTGACTGCTGTTTCTCACTGA 57.458 42.857 0.00 0.00 0.00 3.41
1974 2018 8.747471 CCTATCTGATATCTCTATGTTGAGCAA 58.253 37.037 3.98 0.00 34.29 3.91
2057 2101 3.495193 CATGCACTTCAACAAGAATCCG 58.505 45.455 0.00 0.00 35.25 4.18
2070 2114 2.742428 ATGTCCTATGGCATGCACTT 57.258 45.000 21.36 9.60 0.00 3.16
2081 2125 3.614568 AACGGAGGGAGTATGTCCTAT 57.385 47.619 0.00 0.00 46.06 2.57
2085 2129 4.996788 TTAGAAACGGAGGGAGTATGTC 57.003 45.455 0.00 0.00 0.00 3.06
2090 2134 7.201983 GGTCTTATATTTAGAAACGGAGGGAGT 60.202 40.741 0.00 0.00 0.00 3.85
2091 2135 7.015389 AGGTCTTATATTTAGAAACGGAGGGAG 59.985 40.741 0.00 0.00 0.00 4.30
2092 2136 6.842807 AGGTCTTATATTTAGAAACGGAGGGA 59.157 38.462 0.00 0.00 0.00 4.20
2093 2137 7.063934 AGGTCTTATATTTAGAAACGGAGGG 57.936 40.000 0.00 0.00 0.00 4.30
2094 2138 8.959705 AAAGGTCTTATATTTAGAAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
2111 2155 9.372369 CTCGTATTGAAATCTCTAAAAGGTCTT 57.628 33.333 0.00 0.00 0.00 3.01
2112 2156 7.492994 GCTCGTATTGAAATCTCTAAAAGGTCT 59.507 37.037 0.00 0.00 0.00 3.85
2113 2157 7.492994 AGCTCGTATTGAAATCTCTAAAAGGTC 59.507 37.037 0.00 0.00 0.00 3.85
2114 2158 7.331791 AGCTCGTATTGAAATCTCTAAAAGGT 58.668 34.615 0.00 0.00 0.00 3.50
2115 2159 7.778470 AGCTCGTATTGAAATCTCTAAAAGG 57.222 36.000 0.00 0.00 0.00 3.11
2116 2160 9.302345 TGTAGCTCGTATTGAAATCTCTAAAAG 57.698 33.333 0.00 0.00 0.00 2.27
2117 2161 9.817809 ATGTAGCTCGTATTGAAATCTCTAAAA 57.182 29.630 0.00 0.00 0.00 1.52
2119 2163 9.894783 GTATGTAGCTCGTATTGAAATCTCTAA 57.105 33.333 0.00 0.00 0.00 2.10
2120 2164 8.228464 CGTATGTAGCTCGTATTGAAATCTCTA 58.772 37.037 0.00 0.00 0.00 2.43
2121 2165 7.078851 CGTATGTAGCTCGTATTGAAATCTCT 58.921 38.462 0.00 0.00 0.00 3.10
2122 2166 6.305877 CCGTATGTAGCTCGTATTGAAATCTC 59.694 42.308 0.00 0.00 0.00 2.75
2123 2167 6.016527 TCCGTATGTAGCTCGTATTGAAATCT 60.017 38.462 0.00 0.00 0.00 2.40
2124 2168 6.147581 TCCGTATGTAGCTCGTATTGAAATC 58.852 40.000 0.00 0.00 0.00 2.17
2125 2169 6.080648 TCCGTATGTAGCTCGTATTGAAAT 57.919 37.500 0.00 0.00 0.00 2.17
2126 2170 5.503662 TCCGTATGTAGCTCGTATTGAAA 57.496 39.130 0.00 0.00 0.00 2.69
2127 2171 5.009310 ACATCCGTATGTAGCTCGTATTGAA 59.991 40.000 0.00 0.00 44.66 2.69
2128 2172 4.517832 ACATCCGTATGTAGCTCGTATTGA 59.482 41.667 0.00 0.00 44.66 2.57
2129 2173 4.795268 ACATCCGTATGTAGCTCGTATTG 58.205 43.478 0.00 0.00 44.66 1.90
2170 2214 5.641209 ACAGAGCAAATGAGTGAATCTACAC 59.359 40.000 0.00 0.00 40.60 2.90
2171 2215 5.798132 ACAGAGCAAATGAGTGAATCTACA 58.202 37.500 0.00 0.00 0.00 2.74
2172 2216 7.493971 ACATACAGAGCAAATGAGTGAATCTAC 59.506 37.037 0.00 0.00 0.00 2.59
2173 2217 7.559486 ACATACAGAGCAAATGAGTGAATCTA 58.441 34.615 0.00 0.00 0.00 1.98
2174 2218 6.413052 ACATACAGAGCAAATGAGTGAATCT 58.587 36.000 0.00 0.00 0.00 2.40
2175 2219 6.674694 ACATACAGAGCAAATGAGTGAATC 57.325 37.500 0.00 0.00 0.00 2.52
2176 2220 8.743085 ATTACATACAGAGCAAATGAGTGAAT 57.257 30.769 0.00 0.00 0.00 2.57
2177 2221 7.280876 GGATTACATACAGAGCAAATGAGTGAA 59.719 37.037 0.00 0.00 0.00 3.18
2178 2222 6.763135 GGATTACATACAGAGCAAATGAGTGA 59.237 38.462 0.00 0.00 0.00 3.41
2179 2223 6.292542 CGGATTACATACAGAGCAAATGAGTG 60.293 42.308 0.00 0.00 0.00 3.51
2180 2224 5.755375 CGGATTACATACAGAGCAAATGAGT 59.245 40.000 0.00 0.00 0.00 3.41
2181 2225 5.333645 GCGGATTACATACAGAGCAAATGAG 60.334 44.000 0.00 0.00 0.00 2.90
2182 2226 4.511454 GCGGATTACATACAGAGCAAATGA 59.489 41.667 0.00 0.00 0.00 2.57
2183 2227 4.273235 TGCGGATTACATACAGAGCAAATG 59.727 41.667 0.00 0.00 0.00 2.32
2184 2228 4.450976 TGCGGATTACATACAGAGCAAAT 58.549 39.130 0.00 0.00 0.00 2.32
2185 2229 3.867857 TGCGGATTACATACAGAGCAAA 58.132 40.909 0.00 0.00 0.00 3.68
2186 2230 3.535280 TGCGGATTACATACAGAGCAA 57.465 42.857 0.00 0.00 0.00 3.91
2187 2231 3.751479 ATGCGGATTACATACAGAGCA 57.249 42.857 0.00 0.00 37.77 4.26
2188 2232 3.187227 CCAATGCGGATTACATACAGAGC 59.813 47.826 0.40 0.00 36.56 4.09
2189 2233 3.748048 CCCAATGCGGATTACATACAGAG 59.252 47.826 0.40 0.00 36.56 3.35
2190 2234 3.389656 TCCCAATGCGGATTACATACAGA 59.610 43.478 0.40 0.00 36.56 3.41
2191 2235 3.498397 GTCCCAATGCGGATTACATACAG 59.502 47.826 0.40 0.00 36.56 2.74
2192 2236 3.472652 GTCCCAATGCGGATTACATACA 58.527 45.455 0.40 0.00 36.56 2.29
2193 2237 2.812011 GGTCCCAATGCGGATTACATAC 59.188 50.000 0.40 0.00 36.56 2.39
2194 2238 2.708861 AGGTCCCAATGCGGATTACATA 59.291 45.455 0.40 0.00 36.56 2.29
2195 2239 1.494721 AGGTCCCAATGCGGATTACAT 59.505 47.619 0.40 0.00 36.56 2.29
2196 2240 0.916086 AGGTCCCAATGCGGATTACA 59.084 50.000 0.40 0.00 36.56 2.41
2197 2241 1.141053 AGAGGTCCCAATGCGGATTAC 59.859 52.381 0.40 0.00 36.56 1.89
2198 2242 1.507140 AGAGGTCCCAATGCGGATTA 58.493 50.000 0.40 0.00 36.56 1.75
2199 2243 1.507140 TAGAGGTCCCAATGCGGATT 58.493 50.000 0.00 0.00 36.56 3.01
2200 2244 1.734655 ATAGAGGTCCCAATGCGGAT 58.265 50.000 0.00 0.00 36.56 4.18
2201 2245 2.391926 TATAGAGGTCCCAATGCGGA 57.608 50.000 0.00 0.00 36.56 5.54
2202 2246 3.403038 CTTTATAGAGGTCCCAATGCGG 58.597 50.000 0.00 0.00 0.00 5.69
2203 2247 2.808543 GCTTTATAGAGGTCCCAATGCG 59.191 50.000 0.00 0.00 0.00 4.73
2204 2248 3.149981 GGCTTTATAGAGGTCCCAATGC 58.850 50.000 0.00 0.00 0.00 3.56
2205 2249 4.713792 AGGCTTTATAGAGGTCCCAATG 57.286 45.455 0.00 0.00 0.00 2.82
2206 2250 8.701643 ATATAAGGCTTTATAGAGGTCCCAAT 57.298 34.615 4.45 0.00 35.72 3.16
2207 2251 8.520119 AATATAAGGCTTTATAGAGGTCCCAA 57.480 34.615 4.45 0.00 35.72 4.12
2208 2252 8.520119 AAATATAAGGCTTTATAGAGGTCCCA 57.480 34.615 4.45 0.00 35.72 4.37
2218 2262 8.101419 CCTCCGTTCCTAAATATAAGGCTTTAT 58.899 37.037 4.45 6.32 33.84 1.40
2219 2263 7.447594 CCTCCGTTCCTAAATATAAGGCTTTA 58.552 38.462 4.45 0.00 33.84 1.85
2220 2264 6.296803 CCTCCGTTCCTAAATATAAGGCTTT 58.703 40.000 4.45 0.00 33.84 3.51
2221 2265 5.221864 CCCTCCGTTCCTAAATATAAGGCTT 60.222 44.000 4.58 4.58 33.84 4.35
2222 2266 4.286291 CCCTCCGTTCCTAAATATAAGGCT 59.714 45.833 0.01 0.00 33.84 4.58
2223 2267 4.285260 TCCCTCCGTTCCTAAATATAAGGC 59.715 45.833 0.01 0.00 33.84 4.35
2224 2268 5.569026 GCTCCCTCCGTTCCTAAATATAAGG 60.569 48.000 0.00 0.00 35.26 2.69
2225 2269 5.011738 TGCTCCCTCCGTTCCTAAATATAAG 59.988 44.000 0.00 0.00 0.00 1.73
2226 2270 4.903049 TGCTCCCTCCGTTCCTAAATATAA 59.097 41.667 0.00 0.00 0.00 0.98
2227 2271 4.485875 TGCTCCCTCCGTTCCTAAATATA 58.514 43.478 0.00 0.00 0.00 0.86
2228 2272 3.314693 TGCTCCCTCCGTTCCTAAATAT 58.685 45.455 0.00 0.00 0.00 1.28
2229 2273 2.698797 CTGCTCCCTCCGTTCCTAAATA 59.301 50.000 0.00 0.00 0.00 1.40
2230 2274 1.486726 CTGCTCCCTCCGTTCCTAAAT 59.513 52.381 0.00 0.00 0.00 1.40
2231 2275 0.902531 CTGCTCCCTCCGTTCCTAAA 59.097 55.000 0.00 0.00 0.00 1.85
2232 2276 0.040646 TCTGCTCCCTCCGTTCCTAA 59.959 55.000 0.00 0.00 0.00 2.69
2233 2277 0.261991 ATCTGCTCCCTCCGTTCCTA 59.738 55.000 0.00 0.00 0.00 2.94
2234 2278 1.002274 ATCTGCTCCCTCCGTTCCT 59.998 57.895 0.00 0.00 0.00 3.36
2235 2279 1.144936 CATCTGCTCCCTCCGTTCC 59.855 63.158 0.00 0.00 0.00 3.62
2236 2280 1.112113 TACATCTGCTCCCTCCGTTC 58.888 55.000 0.00 0.00 0.00 3.95
2237 2281 1.794714 ATACATCTGCTCCCTCCGTT 58.205 50.000 0.00 0.00 0.00 4.44
2238 2282 2.677542 TATACATCTGCTCCCTCCGT 57.322 50.000 0.00 0.00 0.00 4.69
2239 2283 4.440802 GCTAATATACATCTGCTCCCTCCG 60.441 50.000 0.00 0.00 0.00 4.63
2240 2284 4.714308 AGCTAATATACATCTGCTCCCTCC 59.286 45.833 0.00 0.00 0.00 4.30
2241 2285 5.930837 AGCTAATATACATCTGCTCCCTC 57.069 43.478 0.00 0.00 0.00 4.30
2242 2286 6.694445 AAAGCTAATATACATCTGCTCCCT 57.306 37.500 0.00 0.00 0.00 4.20
2243 2287 6.536941 GCTAAAGCTAATATACATCTGCTCCC 59.463 42.308 0.00 0.00 38.21 4.30
2244 2288 6.536941 GGCTAAAGCTAATATACATCTGCTCC 59.463 42.308 1.39 0.00 41.70 4.70
2245 2289 7.099764 TGGCTAAAGCTAATATACATCTGCTC 58.900 38.462 1.39 0.00 41.70 4.26
2246 2290 7.009179 TGGCTAAAGCTAATATACATCTGCT 57.991 36.000 1.39 0.00 41.70 4.24
2247 2291 7.768120 AGATGGCTAAAGCTAATATACATCTGC 59.232 37.037 14.86 0.00 38.08 4.26
2248 2292 9.311916 GAGATGGCTAAAGCTAATATACATCTG 57.688 37.037 18.45 0.00 38.90 2.90
2280 2324 4.827692 TCACCGTAAATAACATGCAGTCT 58.172 39.130 0.00 0.00 0.00 3.24
2282 2326 6.509418 AAATCACCGTAAATAACATGCAGT 57.491 33.333 0.00 0.00 0.00 4.40
2292 2336 9.661563 TCAGTAATACAGAAAATCACCGTAAAT 57.338 29.630 0.00 0.00 0.00 1.40
2293 2337 9.491675 TTCAGTAATACAGAAAATCACCGTAAA 57.508 29.630 0.00 0.00 0.00 2.01
2294 2338 9.661563 ATTCAGTAATACAGAAAATCACCGTAA 57.338 29.630 2.45 0.00 27.54 3.18
2296 2340 9.314321 CTATTCAGTAATACAGAAAATCACCGT 57.686 33.333 2.45 0.00 27.54 4.83
2297 2341 9.529325 TCTATTCAGTAATACAGAAAATCACCG 57.471 33.333 2.45 0.00 27.54 4.94
2332 2376 4.783621 TGATCCTGCACCTGCGCC 62.784 66.667 4.18 0.00 45.83 6.53
2334 2378 3.190849 CGTGATCCTGCACCTGCG 61.191 66.667 0.00 0.00 45.83 5.18
2335 2379 1.812922 CTCGTGATCCTGCACCTGC 60.813 63.158 0.00 0.00 42.50 4.85
2336 2380 1.153489 CCTCGTGATCCTGCACCTG 60.153 63.158 0.00 0.00 35.37 4.00
2337 2381 3.023949 GCCTCGTGATCCTGCACCT 62.024 63.158 0.00 0.00 35.37 4.00
2350 2394 1.343789 AGATGAGATCCATGTGCCTCG 59.656 52.381 1.91 0.00 35.17 4.63
2371 2415 3.047857 TGACCCATATGCTTGATGGAGA 58.952 45.455 12.12 0.00 45.89 3.71
2394 2438 2.943033 GACGCACCCTAAAATGCATAGT 59.057 45.455 0.00 0.00 42.17 2.12
2395 2439 2.032894 CGACGCACCCTAAAATGCATAG 60.033 50.000 0.00 0.00 42.17 2.23
2441 2485 1.002366 GAACGCCAGCTACTGTGATG 58.998 55.000 0.00 0.00 0.00 3.07
2452 2496 1.734465 GATCAAACTCAGGAACGCCAG 59.266 52.381 0.00 0.00 36.29 4.85
2462 2506 1.825090 ATGGCAAGCGATCAAACTCA 58.175 45.000 0.00 0.00 0.00 3.41
2498 2542 1.846261 AAGGCAGCTTCCCTTGACA 59.154 52.632 13.34 0.00 41.03 3.58
2502 2546 0.106015 AACACAAGGCAGCTTCCCTT 60.106 50.000 9.19 9.19 43.29 3.95
2503 2547 0.538287 GAACACAAGGCAGCTTCCCT 60.538 55.000 0.00 0.00 0.00 4.20
2504 2548 1.527433 GGAACACAAGGCAGCTTCCC 61.527 60.000 0.00 0.00 0.00 3.97
2505 2549 0.823356 TGGAACACAAGGCAGCTTCC 60.823 55.000 0.00 0.00 0.00 3.46
2506 2550 2.719376 TGGAACACAAGGCAGCTTC 58.281 52.632 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.