Multiple sequence alignment - TraesCS2B01G353500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G353500 chr2B 100.000 2994 0 0 1 2994 504467711 504470704 0.000000e+00 5529.0
1 TraesCS2B01G353500 chr2B 96.820 566 17 1 1 566 504444065 504444629 0.000000e+00 944.0
2 TraesCS2B01G353500 chr2D 93.012 2075 71 21 310 2377 427570340 427572347 0.000000e+00 2961.0
3 TraesCS2B01G353500 chr2D 91.000 200 14 3 2531 2726 427572340 427572539 1.770000e-67 267.0
4 TraesCS2B01G353500 chr2A 91.223 1823 72 29 312 2109 560784498 560782739 0.000000e+00 2399.0
5 TraesCS2B01G353500 chr2A 92.708 192 9 3 2179 2370 560782740 560782554 3.800000e-69 272.0
6 TraesCS2B01G353500 chr2A 95.783 166 7 0 2724 2889 773064473 773064308 4.920000e-68 268.0
7 TraesCS2B01G353500 chr2A 90.659 182 16 1 2545 2725 560782556 560782375 1.070000e-59 241.0
8 TraesCS2B01G353500 chr2A 93.458 107 4 2 2888 2994 560782367 560782264 4.000000e-34 156.0
9 TraesCS2B01G353500 chr5D 94.212 311 15 3 11 319 391949969 391949660 3.490000e-129 472.0
10 TraesCS2B01G353500 chr5D 95.238 168 8 0 2722 2889 390357070 390357237 1.770000e-67 267.0
11 TraesCS2B01G353500 chr4B 95.286 297 12 2 18 313 466828317 466828022 1.260000e-128 470.0
12 TraesCS2B01G353500 chr4B 93.791 306 18 1 9 314 222661710 222662014 2.720000e-125 459.0
13 TraesCS2B01G353500 chr4B 93.791 306 18 1 9 314 386325675 386325979 2.720000e-125 459.0
14 TraesCS2B01G353500 chr4B 92.727 165 12 0 2373 2537 660120597 660120761 3.860000e-59 239.0
15 TraesCS2B01G353500 chr7B 94.079 304 18 0 17 320 229388387 229388690 2.100000e-126 462.0
16 TraesCS2B01G353500 chr7B 95.322 171 8 0 2720 2890 678737369 678737539 3.800000e-69 272.0
17 TraesCS2B01G353500 chr6B 93.791 306 18 1 9 314 444848192 444848496 2.720000e-125 459.0
18 TraesCS2B01G353500 chr6B 94.040 302 18 0 14 315 607986242 607985941 2.720000e-125 459.0
19 TraesCS2B01G353500 chr5B 93.770 305 18 1 10 314 302976582 302976885 9.780000e-125 457.0
20 TraesCS2B01G353500 chr5B 94.186 172 10 0 2723 2894 622039202 622039373 2.290000e-66 263.0
21 TraesCS2B01G353500 chr4A 97.605 167 4 0 2725 2891 636581068 636580902 1.360000e-73 287.0
22 TraesCS2B01G353500 chr4A 93.252 163 11 0 2375 2537 689197202 689197364 1.070000e-59 241.0
23 TraesCS2B01G353500 chr1B 95.266 169 8 0 2723 2891 259414505 259414337 4.920000e-68 268.0
24 TraesCS2B01G353500 chr3B 96.855 159 5 0 2375 2533 1591450 1591292 1.770000e-67 267.0
25 TraesCS2B01G353500 chr3B 95.238 168 8 0 2722 2889 160359014 160359181 1.770000e-67 267.0
26 TraesCS2B01G353500 chr3B 94.706 170 9 0 2722 2891 22219691 22219860 6.360000e-67 265.0
27 TraesCS2B01G353500 chr3B 92.814 167 12 0 2375 2541 724932292 724932126 2.980000e-60 243.0
28 TraesCS2B01G353500 chr3B 90.000 180 16 2 2376 2553 263271164 263270985 6.450000e-57 231.0
29 TraesCS2B01G353500 chr1A 93.750 176 11 0 2724 2899 392054357 392054532 6.360000e-67 265.0
30 TraesCS2B01G353500 chr3D 92.727 165 12 0 2376 2540 238999575 238999411 3.860000e-59 239.0
31 TraesCS2B01G353500 chr3D 91.765 170 14 0 2375 2544 571465529 571465360 1.390000e-58 237.0
32 TraesCS2B01G353500 chr3D 92.683 164 12 0 2375 2538 579494791 579494954 1.390000e-58 237.0
33 TraesCS2B01G353500 chr7A 91.765 170 14 0 2375 2544 105168358 105168189 1.390000e-58 237.0
34 TraesCS2B01G353500 chrUn 100.000 29 0 0 1822 1850 356020608 356020636 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G353500 chr2B 504467711 504470704 2993 False 5529 5529 100.000 1 2994 1 chr2B.!!$F2 2993
1 TraesCS2B01G353500 chr2B 504444065 504444629 564 False 944 944 96.820 1 566 1 chr2B.!!$F1 565
2 TraesCS2B01G353500 chr2D 427570340 427572539 2199 False 1614 2961 92.006 310 2726 2 chr2D.!!$F1 2416
3 TraesCS2B01G353500 chr2A 560782264 560784498 2234 True 767 2399 92.012 312 2994 4 chr2A.!!$R2 2682

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
69 70 0.321298 GGCTGTGTACCGTGACCAAT 60.321 55.0 0.0 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2061 2108 0.745468 GTTGTTAAACCCGTGCCCAA 59.255 50.0 0.0 0.0 0.0 4.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 4.772624 TGAGTAAGTCATCTTAGGCTGTGT 59.227 41.667 0.00 0.00 36.90 3.72
69 70 0.321298 GGCTGTGTACCGTGACCAAT 60.321 55.000 0.00 0.00 0.00 3.16
73 74 1.964933 TGTGTACCGTGACCAATGAGA 59.035 47.619 0.00 0.00 0.00 3.27
147 148 3.191162 GCAATGAACTAACCACTGCATGA 59.809 43.478 0.00 0.00 0.00 3.07
171 172 7.011950 TGACGTGTTTGATAGTTTCAAGTCATT 59.988 33.333 0.00 2.26 44.90 2.57
182 183 5.928264 AGTTTCAAGTCATTAAAAGCATGCC 59.072 36.000 15.66 0.00 0.00 4.40
230 231 7.655732 TGATATGTCAAGAAACAAGAAACGAGA 59.344 33.333 0.00 0.00 31.81 4.04
404 405 5.957798 TCAATTCAAACATGAAGATGGAGC 58.042 37.500 0.00 0.00 33.39 4.70
585 588 1.821241 CGCAACGTCTGGATATGGCG 61.821 60.000 0.00 0.00 37.17 5.69
639 642 3.757745 AATTCAAAATCCGCCGTACTG 57.242 42.857 0.00 0.00 0.00 2.74
808 822 3.933900 GACACGCGCGTTCGTCCTA 62.934 63.158 35.90 0.00 41.21 2.94
891 914 0.391793 CCTTCCTTCCGCCAGAGTTC 60.392 60.000 0.00 0.00 0.00 3.01
975 1000 0.703056 TCTAGGAGGAGGGAGGGGAG 60.703 65.000 0.00 0.00 0.00 4.30
976 1001 1.705450 TAGGAGGAGGGAGGGGAGG 60.705 68.421 0.00 0.00 0.00 4.30
977 1002 4.179599 GGAGGAGGGAGGGGAGGG 62.180 77.778 0.00 0.00 0.00 4.30
978 1003 4.179599 GAGGAGGGAGGGGAGGGG 62.180 77.778 0.00 0.00 0.00 4.79
1176 1212 4.916293 GATGCATCGGCGGCCTGA 62.916 66.667 18.34 15.96 45.35 3.86
1324 1364 2.805353 CAGGACAAGGACGTCGCG 60.805 66.667 9.92 0.00 36.73 5.87
1699 1745 2.752238 CACGAGGAGGAGGACGCT 60.752 66.667 0.00 0.00 0.00 5.07
1798 1844 4.473520 CTGGGGTGCGATTCGGCT 62.474 66.667 8.34 0.00 0.00 5.52
1919 1965 1.148310 CACGCCTCCTAACAACAGTG 58.852 55.000 0.00 0.00 0.00 3.66
1930 1976 3.501911 AACAGTGGCAGCAGGGGT 61.502 61.111 0.00 0.00 0.00 4.95
1937 1983 2.583520 GCAGCAGGGGTGAGAGAG 59.416 66.667 0.00 0.00 32.22 3.20
1998 2044 6.555315 GTTCCTTGCACATAAATTAGACAGG 58.445 40.000 0.00 0.00 0.00 4.00
2032 2078 3.412237 TTTAGGGTTTTCTCCGGTCTG 57.588 47.619 0.00 0.00 0.00 3.51
2033 2079 0.611714 TAGGGTTTTCTCCGGTCTGC 59.388 55.000 0.00 0.00 0.00 4.26
2061 2108 3.433314 CCATCATCTTACAGAAGCAGGCT 60.433 47.826 0.00 0.00 32.21 4.58
2075 2122 2.282603 GGCTTGGGCACGGGTTTA 60.283 61.111 0.00 0.00 40.87 2.01
2079 2126 1.033574 CTTGGGCACGGGTTTAACAA 58.966 50.000 0.00 0.00 0.00 2.83
2153 2200 3.780357 TGCTTGTGCATGTGCCAT 58.220 50.000 2.07 0.00 45.31 4.40
2154 2201 1.290639 TGCTTGTGCATGTGCCATG 59.709 52.632 9.94 9.94 45.31 3.66
2155 2202 2.098233 GCTTGTGCATGTGCCATGC 61.098 57.895 24.69 24.69 44.76 4.06
2156 2203 1.447140 CTTGTGCATGTGCCATGCC 60.447 57.895 26.88 20.65 43.94 4.40
2157 2204 1.884075 CTTGTGCATGTGCCATGCCT 61.884 55.000 26.88 0.00 43.94 4.75
2158 2205 1.473497 TTGTGCATGTGCCATGCCTT 61.473 50.000 26.88 0.00 43.94 4.35
2159 2206 1.153706 GTGCATGTGCCATGCCTTC 60.154 57.895 26.88 17.61 43.94 3.46
2160 2207 2.352821 TGCATGTGCCATGCCTTCC 61.353 57.895 26.88 9.12 43.94 3.46
2161 2208 3.085119 GCATGTGCCATGCCTTCCC 62.085 63.158 22.34 2.15 39.01 3.97
2177 2224 1.358152 TCCCCCTGAAGACGTCATTT 58.642 50.000 19.50 3.71 35.07 2.32
2248 2297 2.282674 CTGCAAGGGCTGGCTTGA 60.283 61.111 14.32 3.25 41.91 3.02
2349 2398 2.689983 GGATGTCTTATTTGGGCACTGG 59.310 50.000 0.00 0.00 0.00 4.00
2377 2426 2.417515 GCTACACAGTTCTGGGAGCTAC 60.418 54.545 9.16 0.00 0.00 3.58
2378 2427 2.016905 ACACAGTTCTGGGAGCTACT 57.983 50.000 9.16 0.00 0.00 2.57
2379 2428 1.896465 ACACAGTTCTGGGAGCTACTC 59.104 52.381 9.16 0.00 0.00 2.59
2388 2437 2.117257 GGAGCTACTCCCTCCGTTC 58.883 63.158 1.98 0.00 44.36 3.95
2390 2439 0.396001 GAGCTACTCCCTCCGTTCCT 60.396 60.000 0.00 0.00 0.00 3.36
2391 2440 0.924823 AGCTACTCCCTCCGTTCCTA 59.075 55.000 0.00 0.00 0.00 2.94
2392 2441 1.287146 AGCTACTCCCTCCGTTCCTAA 59.713 52.381 0.00 0.00 0.00 2.69
2393 2442 2.105766 GCTACTCCCTCCGTTCCTAAA 58.894 52.381 0.00 0.00 0.00 1.85
2394 2443 2.699321 GCTACTCCCTCCGTTCCTAAAT 59.301 50.000 0.00 0.00 0.00 1.40
2395 2444 3.893813 GCTACTCCCTCCGTTCCTAAATA 59.106 47.826 0.00 0.00 0.00 1.40
2396 2445 4.527427 GCTACTCCCTCCGTTCCTAAATAT 59.473 45.833 0.00 0.00 0.00 1.28
2397 2446 5.713861 GCTACTCCCTCCGTTCCTAAATATA 59.286 44.000 0.00 0.00 0.00 0.86
2398 2447 6.210185 GCTACTCCCTCCGTTCCTAAATATAA 59.790 42.308 0.00 0.00 0.00 0.98
2399 2448 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2400 2449 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2401 2450 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
2402 2451 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
2403 2452 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
2404 2453 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
2405 2454 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
2406 2455 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
2436 2485 9.849166 GATTTTACTATGGACTAGATACAGAGC 57.151 37.037 0.00 0.00 0.00 4.09
2437 2486 7.436430 TTTACTATGGACTAGATACAGAGCG 57.564 40.000 0.00 0.00 0.00 5.03
2438 2487 5.230323 ACTATGGACTAGATACAGAGCGA 57.770 43.478 0.00 0.00 0.00 4.93
2439 2488 5.622180 ACTATGGACTAGATACAGAGCGAA 58.378 41.667 0.00 0.00 0.00 4.70
2440 2489 6.062749 ACTATGGACTAGATACAGAGCGAAA 58.937 40.000 0.00 0.00 0.00 3.46
2441 2490 6.717540 ACTATGGACTAGATACAGAGCGAAAT 59.282 38.462 0.00 0.00 0.00 2.17
2442 2491 5.188327 TGGACTAGATACAGAGCGAAATG 57.812 43.478 0.00 0.00 0.00 2.32
2443 2492 4.887655 TGGACTAGATACAGAGCGAAATGA 59.112 41.667 0.00 0.00 0.00 2.57
2444 2493 5.009110 TGGACTAGATACAGAGCGAAATGAG 59.991 44.000 0.00 0.00 0.00 2.90
2445 2494 5.009210 GGACTAGATACAGAGCGAAATGAGT 59.991 44.000 0.00 0.00 0.00 3.41
2446 2495 5.826586 ACTAGATACAGAGCGAAATGAGTG 58.173 41.667 0.00 0.00 0.00 3.51
2447 2496 4.991153 AGATACAGAGCGAAATGAGTGA 57.009 40.909 0.00 0.00 0.00 3.41
2448 2497 5.330455 AGATACAGAGCGAAATGAGTGAA 57.670 39.130 0.00 0.00 0.00 3.18
2449 2498 5.911752 AGATACAGAGCGAAATGAGTGAAT 58.088 37.500 0.00 0.00 0.00 2.57
2450 2499 5.982516 AGATACAGAGCGAAATGAGTGAATC 59.017 40.000 0.00 0.00 0.00 2.52
2451 2500 4.199432 ACAGAGCGAAATGAGTGAATCT 57.801 40.909 0.00 0.00 0.00 2.40
2452 2501 5.330455 ACAGAGCGAAATGAGTGAATCTA 57.670 39.130 0.00 0.00 0.00 1.98
2453 2502 5.105752 ACAGAGCGAAATGAGTGAATCTAC 58.894 41.667 0.00 0.00 0.00 2.59
2454 2503 4.205996 CAGAGCGAAATGAGTGAATCTACG 59.794 45.833 0.00 0.00 0.00 3.51
2455 2504 2.860735 AGCGAAATGAGTGAATCTACGC 59.139 45.455 0.00 0.00 43.00 4.42
2456 2505 2.603110 GCGAAATGAGTGAATCTACGCA 59.397 45.455 0.00 0.00 42.39 5.24
2457 2506 3.542291 GCGAAATGAGTGAATCTACGCAC 60.542 47.826 0.00 0.00 42.39 5.34
2459 2508 5.034797 CGAAATGAGTGAATCTACGCACTA 58.965 41.667 0.00 0.00 44.77 2.74
2460 2509 5.515270 CGAAATGAGTGAATCTACGCACTAA 59.485 40.000 0.00 0.00 44.77 2.24
2461 2510 6.034577 CGAAATGAGTGAATCTACGCACTAAA 59.965 38.462 0.00 0.00 44.77 1.85
2462 2511 7.411480 CGAAATGAGTGAATCTACGCACTAAAA 60.411 37.037 0.00 0.00 44.77 1.52
2463 2512 7.849804 AATGAGTGAATCTACGCACTAAAAT 57.150 32.000 0.00 0.00 44.77 1.82
2464 2513 6.647212 TGAGTGAATCTACGCACTAAAATG 57.353 37.500 0.00 0.00 44.77 2.32
2465 2514 5.063438 TGAGTGAATCTACGCACTAAAATGC 59.937 40.000 0.00 0.00 44.77 3.56
2466 2515 4.935205 AGTGAATCTACGCACTAAAATGCA 59.065 37.500 0.00 0.00 46.47 3.96
2467 2516 5.586243 AGTGAATCTACGCACTAAAATGCAT 59.414 36.000 0.00 0.00 46.47 3.96
2468 2517 5.904080 GTGAATCTACGCACTAAAATGCATC 59.096 40.000 0.00 0.00 46.47 3.91
2469 2518 5.817296 TGAATCTACGCACTAAAATGCATCT 59.183 36.000 0.00 0.00 46.47 2.90
2470 2519 6.983890 TGAATCTACGCACTAAAATGCATCTA 59.016 34.615 0.00 0.00 46.47 1.98
2471 2520 7.657354 TGAATCTACGCACTAAAATGCATCTAT 59.343 33.333 0.00 0.00 46.47 1.98
2472 2521 9.140286 GAATCTACGCACTAAAATGCATCTATA 57.860 33.333 0.00 0.00 46.47 1.31
2473 2522 9.658799 AATCTACGCACTAAAATGCATCTATAT 57.341 29.630 0.00 0.00 46.47 0.86
2475 2524 9.569167 TCTACGCACTAAAATGCATCTATATAC 57.431 33.333 0.00 0.00 46.47 1.47
2476 2525 9.353999 CTACGCACTAAAATGCATCTATATACA 57.646 33.333 0.00 0.00 46.47 2.29
2477 2526 8.777865 ACGCACTAAAATGCATCTATATACAT 57.222 30.769 0.00 0.00 46.47 2.29
2478 2527 8.873830 ACGCACTAAAATGCATCTATATACATC 58.126 33.333 0.00 0.00 46.47 3.06
2479 2528 8.331022 CGCACTAAAATGCATCTATATACATCC 58.669 37.037 0.00 0.00 46.47 3.51
2480 2529 8.331022 GCACTAAAATGCATCTATATACATCCG 58.669 37.037 0.00 0.00 45.39 4.18
2481 2530 9.371136 CACTAAAATGCATCTATATACATCCGT 57.629 33.333 0.00 0.00 0.00 4.69
2487 2536 8.893219 ATGCATCTATATACATCCGTATTTGG 57.107 34.615 0.00 0.00 39.17 3.28
2488 2537 7.847096 TGCATCTATATACATCCGTATTTGGT 58.153 34.615 0.00 0.00 39.17 3.67
2489 2538 8.318412 TGCATCTATATACATCCGTATTTGGTT 58.682 33.333 0.00 0.00 39.17 3.67
2490 2539 8.818057 GCATCTATATACATCCGTATTTGGTTC 58.182 37.037 0.00 0.00 39.17 3.62
2491 2540 9.869757 CATCTATATACATCCGTATTTGGTTCA 57.130 33.333 0.00 0.00 39.17 3.18
2496 2545 7.962964 ATACATCCGTATTTGGTTCATAGTG 57.037 36.000 0.00 0.00 34.53 2.74
2497 2546 5.123227 ACATCCGTATTTGGTTCATAGTGG 58.877 41.667 0.00 0.00 0.00 4.00
2498 2547 4.145365 TCCGTATTTGGTTCATAGTGGG 57.855 45.455 0.00 0.00 0.00 4.61
2499 2548 3.775866 TCCGTATTTGGTTCATAGTGGGA 59.224 43.478 0.00 0.00 0.00 4.37
2500 2549 4.410883 TCCGTATTTGGTTCATAGTGGGAT 59.589 41.667 0.00 0.00 0.00 3.85
2501 2550 4.755123 CCGTATTTGGTTCATAGTGGGATC 59.245 45.833 0.00 0.00 0.00 3.36
2502 2551 5.454755 CCGTATTTGGTTCATAGTGGGATCT 60.455 44.000 0.00 0.00 0.00 2.75
2503 2552 5.696724 CGTATTTGGTTCATAGTGGGATCTC 59.303 44.000 0.00 0.00 0.00 2.75
2504 2553 5.983333 ATTTGGTTCATAGTGGGATCTCT 57.017 39.130 0.00 0.00 0.00 3.10
2505 2554 7.255836 CGTATTTGGTTCATAGTGGGATCTCTA 60.256 40.741 0.00 0.00 0.00 2.43
2506 2555 5.871396 TTGGTTCATAGTGGGATCTCTAC 57.129 43.478 0.00 0.00 0.00 2.59
2507 2556 4.878968 TGGTTCATAGTGGGATCTCTACA 58.121 43.478 0.00 0.00 0.00 2.74
2508 2557 5.277250 TGGTTCATAGTGGGATCTCTACAA 58.723 41.667 0.00 0.00 0.00 2.41
2509 2558 5.724370 TGGTTCATAGTGGGATCTCTACAAA 59.276 40.000 0.00 0.00 0.00 2.83
2510 2559 6.127054 TGGTTCATAGTGGGATCTCTACAAAG 60.127 42.308 0.00 0.00 0.00 2.77
2511 2560 6.098409 GGTTCATAGTGGGATCTCTACAAAGA 59.902 42.308 0.00 0.00 0.00 2.52
2512 2561 6.716934 TCATAGTGGGATCTCTACAAAGAC 57.283 41.667 0.00 0.00 0.00 3.01
2513 2562 6.436027 TCATAGTGGGATCTCTACAAAGACT 58.564 40.000 0.00 0.00 0.00 3.24
2514 2563 6.897966 TCATAGTGGGATCTCTACAAAGACTT 59.102 38.462 0.00 0.00 0.00 3.01
2515 2564 8.059461 TCATAGTGGGATCTCTACAAAGACTTA 58.941 37.037 0.00 0.00 0.00 2.24
2516 2565 6.532988 AGTGGGATCTCTACAAAGACTTAC 57.467 41.667 0.00 0.00 0.00 2.34
2517 2566 6.017192 AGTGGGATCTCTACAAAGACTTACA 58.983 40.000 0.00 0.00 0.00 2.41
2518 2567 6.670027 AGTGGGATCTCTACAAAGACTTACAT 59.330 38.462 0.00 0.00 0.00 2.29
2519 2568 7.181125 AGTGGGATCTCTACAAAGACTTACATT 59.819 37.037 0.00 0.00 0.00 2.71
2520 2569 7.824779 GTGGGATCTCTACAAAGACTTACATTT 59.175 37.037 0.00 0.00 0.00 2.32
2521 2570 9.042450 TGGGATCTCTACAAAGACTTACATTTA 57.958 33.333 0.00 0.00 0.00 1.40
2522 2571 9.535878 GGGATCTCTACAAAGACTTACATTTAG 57.464 37.037 0.00 0.00 0.00 1.85
2523 2572 9.535878 GGATCTCTACAAAGACTTACATTTAGG 57.464 37.037 0.00 0.00 0.00 2.69
2526 2575 9.924650 TCTCTACAAAGACTTACATTTAGGAAC 57.075 33.333 0.00 0.00 0.00 3.62
2527 2576 8.752766 TCTACAAAGACTTACATTTAGGAACG 57.247 34.615 0.00 0.00 0.00 3.95
2528 2577 8.579006 TCTACAAAGACTTACATTTAGGAACGA 58.421 33.333 0.00 0.00 0.00 3.85
2529 2578 9.199982 CTACAAAGACTTACATTTAGGAACGAA 57.800 33.333 0.00 0.00 0.00 3.85
2530 2579 8.084590 ACAAAGACTTACATTTAGGAACGAAG 57.915 34.615 0.00 0.00 0.00 3.79
2531 2580 7.172703 ACAAAGACTTACATTTAGGAACGAAGG 59.827 37.037 0.00 0.00 0.00 3.46
2532 2581 5.731591 AGACTTACATTTAGGAACGAAGGG 58.268 41.667 0.00 0.00 0.00 3.95
2533 2582 5.482878 AGACTTACATTTAGGAACGAAGGGA 59.517 40.000 0.00 0.00 0.00 4.20
2534 2583 5.731591 ACTTACATTTAGGAACGAAGGGAG 58.268 41.667 0.00 0.00 0.00 4.30
2535 2584 5.247792 ACTTACATTTAGGAACGAAGGGAGT 59.752 40.000 0.00 0.00 0.00 3.85
2536 2585 6.438425 ACTTACATTTAGGAACGAAGGGAGTA 59.562 38.462 0.00 0.00 0.00 2.59
2537 2586 5.952347 ACATTTAGGAACGAAGGGAGTAT 57.048 39.130 0.00 0.00 0.00 2.12
2538 2587 8.537728 TTACATTTAGGAACGAAGGGAGTATA 57.462 34.615 0.00 0.00 0.00 1.47
2539 2588 7.613551 ACATTTAGGAACGAAGGGAGTATAT 57.386 36.000 0.00 0.00 0.00 0.86
2540 2589 8.716674 ACATTTAGGAACGAAGGGAGTATATA 57.283 34.615 0.00 0.00 0.00 0.86
2541 2590 8.583296 ACATTTAGGAACGAAGGGAGTATATAC 58.417 37.037 4.60 4.60 0.00 1.47
2542 2591 8.804204 CATTTAGGAACGAAGGGAGTATATACT 58.196 37.037 15.37 15.37 39.71 2.12
2544 2593 8.854614 TTAGGAACGAAGGGAGTATATACTAC 57.145 38.462 15.84 15.84 36.50 2.73
2545 2594 7.089106 AGGAACGAAGGGAGTATATACTACT 57.911 40.000 21.91 16.52 37.32 2.57
2546 2595 6.941436 AGGAACGAAGGGAGTATATACTACTG 59.059 42.308 21.91 13.06 37.32 2.74
2575 2624 3.159472 TGAACAGAATTGCTCCATTGCT 58.841 40.909 0.00 0.00 0.00 3.91
2697 2747 3.749088 TCTCTCTGTCTGACGAGAAAGAC 59.251 47.826 22.79 3.68 37.62 3.01
2698 2748 2.480802 TCTCTGTCTGACGAGAAAGACG 59.519 50.000 21.43 7.83 44.75 4.18
2726 2776 2.936919 TGGATGCATCACCCATCTAC 57.063 50.000 27.25 7.83 39.19 2.59
2728 2778 2.369860 TGGATGCATCACCCATCTACTC 59.630 50.000 27.25 6.62 39.19 2.59
2729 2779 2.289945 GGATGCATCACCCATCTACTCC 60.290 54.545 27.25 3.63 39.19 3.85
2730 2780 1.131638 TGCATCACCCATCTACTCCC 58.868 55.000 0.00 0.00 0.00 4.30
2731 2781 1.344393 TGCATCACCCATCTACTCCCT 60.344 52.381 0.00 0.00 0.00 4.20
2732 2782 1.346068 GCATCACCCATCTACTCCCTC 59.654 57.143 0.00 0.00 0.00 4.30
2733 2783 1.974236 CATCACCCATCTACTCCCTCC 59.026 57.143 0.00 0.00 0.00 4.30
2734 2784 0.106167 TCACCCATCTACTCCCTCCG 60.106 60.000 0.00 0.00 0.00 4.63
2735 2785 0.397254 CACCCATCTACTCCCTCCGT 60.397 60.000 0.00 0.00 0.00 4.69
2736 2786 0.338814 ACCCATCTACTCCCTCCGTT 59.661 55.000 0.00 0.00 0.00 4.44
2737 2787 1.041437 CCCATCTACTCCCTCCGTTC 58.959 60.000 0.00 0.00 0.00 3.95
2738 2788 1.041437 CCATCTACTCCCTCCGTTCC 58.959 60.000 0.00 0.00 0.00 3.62
2739 2789 1.411787 CCATCTACTCCCTCCGTTCCT 60.412 57.143 0.00 0.00 0.00 3.36
2740 2790 2.158505 CCATCTACTCCCTCCGTTCCTA 60.159 54.545 0.00 0.00 0.00 2.94
2741 2791 3.563223 CATCTACTCCCTCCGTTCCTAA 58.437 50.000 0.00 0.00 0.00 2.69
2742 2792 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
2743 2793 4.261411 TCTACTCCCTCCGTTCCTAAAT 57.739 45.455 0.00 0.00 0.00 1.40
2744 2794 5.393068 TCTACTCCCTCCGTTCCTAAATA 57.607 43.478 0.00 0.00 0.00 1.40
2745 2795 5.961897 TCTACTCCCTCCGTTCCTAAATAT 58.038 41.667 0.00 0.00 0.00 1.28
2746 2796 6.379579 TCTACTCCCTCCGTTCCTAAATATT 58.620 40.000 0.00 0.00 0.00 1.28
2747 2797 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
2748 2798 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
2749 2799 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
2750 2800 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
2751 2801 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
2752 2802 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
2753 2803 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
2754 2804 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
2755 2805 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
2756 2806 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
2757 2807 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
2758 2808 8.336080 CCGTTCCTAAATATTTGTCTTTCTAGC 58.664 37.037 11.05 0.00 0.00 3.42
2759 2809 8.336080 CGTTCCTAAATATTTGTCTTTCTAGCC 58.664 37.037 11.05 0.00 0.00 3.93
2760 2810 9.174166 GTTCCTAAATATTTGTCTTTCTAGCCA 57.826 33.333 11.05 0.00 0.00 4.75
2761 2811 9.920946 TTCCTAAATATTTGTCTTTCTAGCCAT 57.079 29.630 11.05 0.00 0.00 4.40
2762 2812 9.561069 TCCTAAATATTTGTCTTTCTAGCCATC 57.439 33.333 11.05 0.00 0.00 3.51
2763 2813 9.566432 CCTAAATATTTGTCTTTCTAGCCATCT 57.434 33.333 11.05 0.00 0.00 2.90
2766 2816 9.466497 AAATATTTGTCTTTCTAGCCATCTCAA 57.534 29.630 0.00 0.00 0.00 3.02
2767 2817 9.466497 AATATTTGTCTTTCTAGCCATCTCAAA 57.534 29.630 0.00 0.00 0.00 2.69
2768 2818 7.951347 ATTTGTCTTTCTAGCCATCTCAAAT 57.049 32.000 0.00 0.00 0.00 2.32
2769 2819 6.748333 TTGTCTTTCTAGCCATCTCAAATG 57.252 37.500 0.00 0.00 0.00 2.32
2770 2820 5.188434 TGTCTTTCTAGCCATCTCAAATGG 58.812 41.667 0.00 0.00 41.99 3.16
2771 2821 5.045651 TGTCTTTCTAGCCATCTCAAATGGA 60.046 40.000 8.23 0.00 41.64 3.41
2772 2822 5.295540 GTCTTTCTAGCCATCTCAAATGGAC 59.704 44.000 8.23 0.19 41.64 4.02
2773 2823 5.190528 TCTTTCTAGCCATCTCAAATGGACT 59.809 40.000 8.23 7.12 41.64 3.85
2774 2824 6.384015 TCTTTCTAGCCATCTCAAATGGACTA 59.616 38.462 8.23 7.79 41.64 2.59
2775 2825 5.537300 TCTAGCCATCTCAAATGGACTAC 57.463 43.478 8.23 0.00 41.64 2.73
2776 2826 4.962362 TCTAGCCATCTCAAATGGACTACA 59.038 41.667 8.23 0.00 41.64 2.74
2777 2827 4.574674 AGCCATCTCAAATGGACTACAA 57.425 40.909 8.23 0.00 41.64 2.41
2778 2828 5.121380 AGCCATCTCAAATGGACTACAAT 57.879 39.130 8.23 0.00 41.64 2.71
2779 2829 6.252599 AGCCATCTCAAATGGACTACAATA 57.747 37.500 8.23 0.00 41.64 1.90
2780 2830 6.845908 AGCCATCTCAAATGGACTACAATAT 58.154 36.000 8.23 0.00 41.64 1.28
2781 2831 7.977818 AGCCATCTCAAATGGACTACAATATA 58.022 34.615 8.23 0.00 41.64 0.86
2782 2832 8.609483 AGCCATCTCAAATGGACTACAATATAT 58.391 33.333 8.23 0.00 41.64 0.86
2783 2833 8.671921 GCCATCTCAAATGGACTACAATATATG 58.328 37.037 8.23 0.00 41.64 1.78
2784 2834 9.170734 CCATCTCAAATGGACTACAATATATGG 57.829 37.037 0.00 0.00 41.64 2.74
2785 2835 9.948964 CATCTCAAATGGACTACAATATATGGA 57.051 33.333 0.00 0.00 0.00 3.41
2787 2837 9.948964 TCTCAAATGGACTACAATATATGGATG 57.051 33.333 0.00 0.00 0.00 3.51
2788 2838 9.730705 CTCAAATGGACTACAATATATGGATGT 57.269 33.333 0.00 0.00 0.00 3.06
2807 2857 9.770097 ATGGATGTATGTAGTCATGTTTTAGAG 57.230 33.333 0.00 0.00 35.70 2.43
2808 2858 8.758829 TGGATGTATGTAGTCATGTTTTAGAGT 58.241 33.333 0.00 0.00 35.70 3.24
2809 2859 9.035607 GGATGTATGTAGTCATGTTTTAGAGTG 57.964 37.037 0.00 0.00 35.70 3.51
2810 2860 9.587772 GATGTATGTAGTCATGTTTTAGAGTGT 57.412 33.333 0.00 0.00 35.70 3.55
2816 2866 9.856488 TGTAGTCATGTTTTAGAGTGTAGATTC 57.144 33.333 0.00 0.00 0.00 2.52
2817 2867 9.856488 GTAGTCATGTTTTAGAGTGTAGATTCA 57.144 33.333 0.00 0.00 0.00 2.57
2819 2869 9.950496 AGTCATGTTTTAGAGTGTAGATTCATT 57.050 29.630 0.00 0.00 0.00 2.57
2821 2871 9.942850 TCATGTTTTAGAGTGTAGATTCATTCA 57.057 29.630 0.00 0.00 0.00 2.57
2828 2878 7.934855 AGAGTGTAGATTCATTCATTTTGCT 57.065 32.000 0.00 0.00 0.00 3.91
2829 2879 7.983307 AGAGTGTAGATTCATTCATTTTGCTC 58.017 34.615 0.00 0.00 0.00 4.26
2830 2880 7.066766 AGAGTGTAGATTCATTCATTTTGCTCC 59.933 37.037 0.00 0.00 0.00 4.70
2831 2881 5.967674 GTGTAGATTCATTCATTTTGCTCCG 59.032 40.000 0.00 0.00 0.00 4.63
2832 2882 5.647658 TGTAGATTCATTCATTTTGCTCCGT 59.352 36.000 0.00 0.00 0.00 4.69
2833 2883 6.821160 TGTAGATTCATTCATTTTGCTCCGTA 59.179 34.615 0.00 0.00 0.00 4.02
2834 2884 6.949352 AGATTCATTCATTTTGCTCCGTAT 57.051 33.333 0.00 0.00 0.00 3.06
2835 2885 8.988934 GTAGATTCATTCATTTTGCTCCGTATA 58.011 33.333 0.00 0.00 0.00 1.47
2836 2886 8.627208 AGATTCATTCATTTTGCTCCGTATAT 57.373 30.769 0.00 0.00 0.00 0.86
2837 2887 9.725019 AGATTCATTCATTTTGCTCCGTATATA 57.275 29.630 0.00 0.00 0.00 0.86
2838 2888 9.979270 GATTCATTCATTTTGCTCCGTATATAG 57.021 33.333 0.00 0.00 0.00 1.31
2839 2889 8.902540 TTCATTCATTTTGCTCCGTATATAGT 57.097 30.769 0.00 0.00 0.00 2.12
2840 2890 8.534333 TCATTCATTTTGCTCCGTATATAGTC 57.466 34.615 0.00 0.00 0.00 2.59
2841 2891 8.147704 TCATTCATTTTGCTCCGTATATAGTCA 58.852 33.333 0.00 0.00 0.00 3.41
2842 2892 8.939929 CATTCATTTTGCTCCGTATATAGTCAT 58.060 33.333 0.00 0.00 0.00 3.06
2843 2893 8.902540 TTCATTTTGCTCCGTATATAGTCATT 57.097 30.769 0.00 0.00 0.00 2.57
2844 2894 8.902540 TCATTTTGCTCCGTATATAGTCATTT 57.097 30.769 0.00 0.00 0.00 2.32
2845 2895 9.990360 TCATTTTGCTCCGTATATAGTCATTTA 57.010 29.630 0.00 0.00 0.00 1.40
2849 2899 9.990360 TTTGCTCCGTATATAGTCATTTATTGA 57.010 29.630 0.00 0.00 0.00 2.57
2850 2900 9.990360 TTGCTCCGTATATAGTCATTTATTGAA 57.010 29.630 0.00 0.00 35.70 2.69
2851 2901 9.990360 TGCTCCGTATATAGTCATTTATTGAAA 57.010 29.630 0.00 0.00 35.70 2.69
2880 2930 9.595823 TCTAGAAAGACAATTATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
2881 2931 9.595823 CTAGAAAGACAATTATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
2882 2932 8.494016 AGAAAGACAATTATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
2883 2933 7.553044 AGAAAGACAATTATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
2884 2934 5.681639 AGACAATTATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
2885 2935 5.427481 AGACAATTATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
2886 2936 5.681639 ACAATTATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
2894 2944 1.675116 GGAACGGAGGGAGTAGTTTGC 60.675 57.143 0.00 0.00 0.00 3.68
2899 2949 2.354704 CGGAGGGAGTAGTTTGCAATCA 60.355 50.000 10.05 0.00 0.00 2.57
2916 2966 6.101332 TGCAATCAGTGAAATCCTTTTATGC 58.899 36.000 0.00 0.00 0.00 3.14
2972 3022 7.227156 AGTAATACCCATTCTGCTTGGAATAG 58.773 38.462 0.00 0.00 36.26 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 5.002516 AGACGGAGGGAGTACTATTTATCG 58.997 45.833 0.00 0.00 0.00 2.92
8 9 6.598850 CCTAGACGGAGGGAGTACTATTTATC 59.401 46.154 0.00 0.00 32.39 1.75
57 58 1.553248 CCCTTCTCATTGGTCACGGTA 59.447 52.381 0.00 0.00 0.00 4.02
69 70 4.127171 CGTCTCTTGTTTTTCCCTTCTCA 58.873 43.478 0.00 0.00 0.00 3.27
73 74 6.320418 ACATTAACGTCTCTTGTTTTTCCCTT 59.680 34.615 0.00 0.00 0.00 3.95
126 127 4.669965 CGTCATGCAGTGGTTAGTTCATTG 60.670 45.833 0.00 0.00 0.00 2.82
171 172 2.603075 AAGAGGTGGGCATGCTTTTA 57.397 45.000 18.92 0.00 0.00 1.52
182 183 6.889198 TCAACCAATAAGAGATAAGAGGTGG 58.111 40.000 0.00 0.00 0.00 4.61
230 231 1.597663 GCGCGGTGCATTAACTTCTAT 59.402 47.619 8.83 0.00 45.45 1.98
296 297 1.489649 CCAGTACTCCCTCCGTCTAGA 59.510 57.143 0.00 0.00 0.00 2.43
404 405 0.802494 AACGCTGGCGAGGTTTATTG 59.198 50.000 21.77 0.00 42.83 1.90
585 588 1.885871 GCAGGCCAGGTTCATTCAC 59.114 57.895 5.01 0.00 0.00 3.18
923 946 4.683334 GGTGGTGCGCTGCGAAAC 62.683 66.667 28.07 20.45 0.00 2.78
1034 1059 4.704833 TCTTGGTCCTGCCGCTGC 62.705 66.667 0.00 0.00 41.21 5.25
1035 1060 2.743928 GTCTTGGTCCTGCCGCTG 60.744 66.667 0.00 0.00 41.21 5.18
1036 1061 4.021925 GGTCTTGGTCCTGCCGCT 62.022 66.667 0.00 0.00 41.21 5.52
1168 1204 4.664677 ACAGACACGTCAGGCCGC 62.665 66.667 0.00 0.00 0.00 6.53
1169 1205 2.734723 CACAGACACGTCAGGCCG 60.735 66.667 0.00 0.00 0.00 6.13
1170 1206 1.956170 CACACAGACACGTCAGGCC 60.956 63.158 0.00 0.00 0.00 5.19
1171 1207 1.227263 ACACACAGACACGTCAGGC 60.227 57.895 0.00 0.00 0.00 4.85
1172 1208 1.490693 GCACACACAGACACGTCAGG 61.491 60.000 0.00 0.00 0.00 3.86
1173 1209 1.811217 CGCACACACAGACACGTCAG 61.811 60.000 0.00 0.00 0.00 3.51
1174 1210 1.876263 CGCACACACAGACACGTCA 60.876 57.895 0.00 0.00 0.00 4.35
1175 1211 1.876714 ACGCACACACAGACACGTC 60.877 57.895 0.00 0.00 0.00 4.34
1176 1212 2.164663 CACGCACACACAGACACGT 61.165 57.895 0.00 0.00 0.00 4.49
1177 1213 2.164663 ACACGCACACACAGACACG 61.165 57.895 0.00 0.00 0.00 4.49
1178 1214 1.348250 CACACGCACACACAGACAC 59.652 57.895 0.00 0.00 0.00 3.67
1179 1215 1.079474 ACACACGCACACACAGACA 60.079 52.632 0.00 0.00 0.00 3.41
1182 1218 2.023181 GCACACACGCACACACAG 59.977 61.111 0.00 0.00 0.00 3.66
1184 1220 1.775039 ATCTGCACACACGCACACAC 61.775 55.000 0.00 0.00 36.86 3.82
1452 1498 4.918129 CGGTCGTATGGTCCGCCG 62.918 72.222 6.56 0.00 37.90 6.46
1453 1499 4.580551 CCGGTCGTATGGTCCGCC 62.581 72.222 11.94 0.00 42.48 6.13
1454 1500 4.580551 CCCGGTCGTATGGTCCGC 62.581 72.222 0.00 0.00 42.48 5.54
1699 1745 2.748647 TCGTCGATGCCGTCCTCA 60.749 61.111 0.00 0.00 37.05 3.86
1735 1781 2.362503 TCGTCCTCGGACTGGCAT 60.363 61.111 13.74 0.00 42.54 4.40
1792 1838 4.388499 GCCGAGGTGGAAGCCGAA 62.388 66.667 0.00 0.00 42.00 4.30
1879 1925 1.065928 GACGACGAGGCCCAGTATG 59.934 63.158 0.00 0.00 0.00 2.39
1919 1965 3.005539 TCTCTCACCCCTGCTGCC 61.006 66.667 0.00 0.00 0.00 4.85
2027 2073 0.811616 GATGATGGACACGGCAGACC 60.812 60.000 0.00 0.00 0.00 3.85
2032 2078 2.159099 TCTGTAAGATGATGGACACGGC 60.159 50.000 0.00 0.00 38.67 5.68
2033 2079 3.801114 TCTGTAAGATGATGGACACGG 57.199 47.619 0.00 0.00 38.67 4.94
2038 2084 3.432749 GCCTGCTTCTGTAAGATGATGGA 60.433 47.826 0.00 0.00 46.36 3.41
2061 2108 0.745468 GTTGTTAAACCCGTGCCCAA 59.255 50.000 0.00 0.00 0.00 4.12
2079 2126 8.691661 ACCAGTGAATCAGTATAAACAAAAGT 57.308 30.769 0.00 0.00 0.00 2.66
2157 2204 1.358152 AATGACGTCTTCAGGGGGAA 58.642 50.000 17.92 0.00 37.77 3.97
2158 2205 1.358152 AAATGACGTCTTCAGGGGGA 58.642 50.000 17.92 0.00 37.77 4.81
2159 2206 2.084546 GAAAATGACGTCTTCAGGGGG 58.915 52.381 17.92 0.00 37.77 5.40
2160 2207 2.778299 TGAAAATGACGTCTTCAGGGG 58.222 47.619 17.92 0.00 37.77 4.79
2161 2208 5.156355 CAAATGAAAATGACGTCTTCAGGG 58.844 41.667 17.92 8.16 37.77 4.45
2177 2224 8.262715 TGCAGAAAGTATCGAATACAAATGAA 57.737 30.769 0.00 0.00 38.21 2.57
2240 2289 1.584380 GCTCCAACTGCTCAAGCCAG 61.584 60.000 0.00 0.31 41.18 4.85
2248 2297 3.604582 GATCTTTACTGCTCCAACTGCT 58.395 45.455 0.00 0.00 0.00 4.24
2349 2398 0.035458 AGAACTGTGTAGCCAGGCAC 59.965 55.000 15.80 10.54 36.75 5.01
2377 2426 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
2378 2427 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
2379 2428 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
2380 2429 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
2410 2459 9.849166 GCTCTGTATCTAGTCCATAGTAAAATC 57.151 37.037 0.00 0.00 32.85 2.17
2411 2460 8.516234 CGCTCTGTATCTAGTCCATAGTAAAAT 58.484 37.037 0.00 0.00 32.85 1.82
2412 2461 7.718314 TCGCTCTGTATCTAGTCCATAGTAAAA 59.282 37.037 0.00 0.00 32.85 1.52
2413 2462 7.222161 TCGCTCTGTATCTAGTCCATAGTAAA 58.778 38.462 0.00 0.00 32.85 2.01
2414 2463 6.766429 TCGCTCTGTATCTAGTCCATAGTAA 58.234 40.000 0.00 0.00 32.85 2.24
2415 2464 6.356186 TCGCTCTGTATCTAGTCCATAGTA 57.644 41.667 0.00 0.00 32.85 1.82
2416 2465 5.230323 TCGCTCTGTATCTAGTCCATAGT 57.770 43.478 0.00 0.00 32.85 2.12
2417 2466 6.561737 TTTCGCTCTGTATCTAGTCCATAG 57.438 41.667 0.00 0.00 0.00 2.23
2418 2467 6.715264 TCATTTCGCTCTGTATCTAGTCCATA 59.285 38.462 0.00 0.00 0.00 2.74
2419 2468 5.536538 TCATTTCGCTCTGTATCTAGTCCAT 59.463 40.000 0.00 0.00 0.00 3.41
2420 2469 4.887655 TCATTTCGCTCTGTATCTAGTCCA 59.112 41.667 0.00 0.00 0.00 4.02
2421 2470 5.009210 ACTCATTTCGCTCTGTATCTAGTCC 59.991 44.000 0.00 0.00 0.00 3.85
2422 2471 5.912396 CACTCATTTCGCTCTGTATCTAGTC 59.088 44.000 0.00 0.00 0.00 2.59
2423 2472 5.590663 TCACTCATTTCGCTCTGTATCTAGT 59.409 40.000 0.00 0.00 0.00 2.57
2424 2473 6.066054 TCACTCATTTCGCTCTGTATCTAG 57.934 41.667 0.00 0.00 0.00 2.43
2425 2474 6.451064 TTCACTCATTTCGCTCTGTATCTA 57.549 37.500 0.00 0.00 0.00 1.98
2426 2475 4.991153 TCACTCATTTCGCTCTGTATCT 57.009 40.909 0.00 0.00 0.00 1.98
2427 2476 5.982516 AGATTCACTCATTTCGCTCTGTATC 59.017 40.000 0.00 0.00 0.00 2.24
2428 2477 5.911752 AGATTCACTCATTTCGCTCTGTAT 58.088 37.500 0.00 0.00 0.00 2.29
2429 2478 5.330455 AGATTCACTCATTTCGCTCTGTA 57.670 39.130 0.00 0.00 0.00 2.74
2430 2479 4.199432 AGATTCACTCATTTCGCTCTGT 57.801 40.909 0.00 0.00 0.00 3.41
2431 2480 4.205996 CGTAGATTCACTCATTTCGCTCTG 59.794 45.833 0.00 0.00 0.00 3.35
2432 2481 4.355437 CGTAGATTCACTCATTTCGCTCT 58.645 43.478 0.00 0.00 0.00 4.09
2433 2482 3.060873 GCGTAGATTCACTCATTTCGCTC 60.061 47.826 0.00 0.00 38.46 5.03
2434 2483 2.860735 GCGTAGATTCACTCATTTCGCT 59.139 45.455 0.00 0.00 38.46 4.93
2435 2484 2.603110 TGCGTAGATTCACTCATTTCGC 59.397 45.455 0.00 0.00 41.17 4.70
2436 2485 3.859961 AGTGCGTAGATTCACTCATTTCG 59.140 43.478 0.00 0.00 39.11 3.46
2437 2486 6.887376 TTAGTGCGTAGATTCACTCATTTC 57.113 37.500 0.00 0.00 42.06 2.17
2438 2487 7.667043 TTTTAGTGCGTAGATTCACTCATTT 57.333 32.000 0.00 0.00 42.06 2.32
2439 2488 7.677276 GCATTTTAGTGCGTAGATTCACTCATT 60.677 37.037 0.00 0.00 42.06 2.57
2440 2489 6.238211 GCATTTTAGTGCGTAGATTCACTCAT 60.238 38.462 0.00 0.00 42.06 2.90
2441 2490 5.063438 GCATTTTAGTGCGTAGATTCACTCA 59.937 40.000 0.00 0.00 42.06 3.41
2442 2491 5.493735 GCATTTTAGTGCGTAGATTCACTC 58.506 41.667 0.00 0.00 42.06 3.51
2443 2492 5.470845 GCATTTTAGTGCGTAGATTCACT 57.529 39.130 0.00 0.00 44.76 3.41
2454 2503 8.331022 CGGATGTATATAGATGCATTTTAGTGC 58.669 37.037 11.19 0.00 45.25 4.40
2455 2504 9.371136 ACGGATGTATATAGATGCATTTTAGTG 57.629 33.333 11.19 0.00 38.38 2.74
2461 2510 9.330063 CCAAATACGGATGTATATAGATGCATT 57.670 33.333 11.19 2.71 40.42 3.56
2462 2511 8.486210 ACCAAATACGGATGTATATAGATGCAT 58.514 33.333 11.19 0.00 40.42 3.96
2463 2512 7.847096 ACCAAATACGGATGTATATAGATGCA 58.153 34.615 11.19 0.00 40.42 3.96
2464 2513 8.718102 AACCAAATACGGATGTATATAGATGC 57.282 34.615 0.00 0.00 40.42 3.91
2465 2514 9.869757 TGAACCAAATACGGATGTATATAGATG 57.130 33.333 0.00 0.00 40.42 2.90
2470 2519 9.653287 CACTATGAACCAAATACGGATGTATAT 57.347 33.333 0.00 0.00 40.42 0.86
2471 2520 8.092068 CCACTATGAACCAAATACGGATGTATA 58.908 37.037 0.00 0.00 40.42 1.47
2472 2521 6.934645 CCACTATGAACCAAATACGGATGTAT 59.065 38.462 0.00 0.00 43.14 2.29
2473 2522 6.285224 CCACTATGAACCAAATACGGATGTA 58.715 40.000 0.00 0.00 34.45 2.29
2474 2523 5.123227 CCACTATGAACCAAATACGGATGT 58.877 41.667 0.00 0.00 0.00 3.06
2475 2524 4.515191 CCCACTATGAACCAAATACGGATG 59.485 45.833 0.00 0.00 0.00 3.51
2476 2525 4.410883 TCCCACTATGAACCAAATACGGAT 59.589 41.667 0.00 0.00 0.00 4.18
2477 2526 3.775866 TCCCACTATGAACCAAATACGGA 59.224 43.478 0.00 0.00 0.00 4.69
2478 2527 4.145365 TCCCACTATGAACCAAATACGG 57.855 45.455 0.00 0.00 0.00 4.02
2479 2528 5.611374 AGATCCCACTATGAACCAAATACG 58.389 41.667 0.00 0.00 0.00 3.06
2480 2529 6.831976 AGAGATCCCACTATGAACCAAATAC 58.168 40.000 0.00 0.00 0.00 1.89
2481 2530 7.567250 TGTAGAGATCCCACTATGAACCAAATA 59.433 37.037 0.00 0.00 0.00 1.40
2482 2531 5.983333 AGAGATCCCACTATGAACCAAAT 57.017 39.130 0.00 0.00 0.00 2.32
2483 2532 5.724370 TGTAGAGATCCCACTATGAACCAAA 59.276 40.000 0.00 0.00 0.00 3.28
2484 2533 5.277250 TGTAGAGATCCCACTATGAACCAA 58.723 41.667 0.00 0.00 0.00 3.67
2485 2534 4.878968 TGTAGAGATCCCACTATGAACCA 58.121 43.478 0.00 0.00 0.00 3.67
2486 2535 5.871396 TTGTAGAGATCCCACTATGAACC 57.129 43.478 0.00 0.00 0.00 3.62
2487 2536 6.981559 GTCTTTGTAGAGATCCCACTATGAAC 59.018 42.308 0.00 0.00 0.00 3.18
2488 2537 6.897966 AGTCTTTGTAGAGATCCCACTATGAA 59.102 38.462 0.00 0.00 0.00 2.57
2489 2538 6.436027 AGTCTTTGTAGAGATCCCACTATGA 58.564 40.000 0.00 0.00 0.00 2.15
2490 2539 6.723298 AGTCTTTGTAGAGATCCCACTATG 57.277 41.667 0.00 0.00 0.00 2.23
2491 2540 7.839705 TGTAAGTCTTTGTAGAGATCCCACTAT 59.160 37.037 0.00 0.00 0.00 2.12
2492 2541 7.179966 TGTAAGTCTTTGTAGAGATCCCACTA 58.820 38.462 0.00 0.00 0.00 2.74
2493 2542 6.017192 TGTAAGTCTTTGTAGAGATCCCACT 58.983 40.000 0.00 0.00 0.00 4.00
2494 2543 6.282199 TGTAAGTCTTTGTAGAGATCCCAC 57.718 41.667 0.00 0.00 0.00 4.61
2495 2544 7.496346 AATGTAAGTCTTTGTAGAGATCCCA 57.504 36.000 0.00 0.00 0.00 4.37
2496 2545 9.535878 CTAAATGTAAGTCTTTGTAGAGATCCC 57.464 37.037 0.00 0.00 0.00 3.85
2497 2546 9.535878 CCTAAATGTAAGTCTTTGTAGAGATCC 57.464 37.037 0.00 0.00 0.00 3.36
2500 2549 9.924650 GTTCCTAAATGTAAGTCTTTGTAGAGA 57.075 33.333 0.00 0.00 0.00 3.10
2501 2550 8.861101 CGTTCCTAAATGTAAGTCTTTGTAGAG 58.139 37.037 0.00 0.00 0.00 2.43
2502 2551 8.579006 TCGTTCCTAAATGTAAGTCTTTGTAGA 58.421 33.333 0.00 0.00 0.00 2.59
2503 2552 8.752766 TCGTTCCTAAATGTAAGTCTTTGTAG 57.247 34.615 0.00 0.00 0.00 2.74
2504 2553 9.199982 CTTCGTTCCTAAATGTAAGTCTTTGTA 57.800 33.333 0.00 0.00 0.00 2.41
2505 2554 7.172703 CCTTCGTTCCTAAATGTAAGTCTTTGT 59.827 37.037 0.00 0.00 0.00 2.83
2506 2555 7.360946 CCCTTCGTTCCTAAATGTAAGTCTTTG 60.361 40.741 0.00 0.00 0.00 2.77
2507 2556 6.653740 CCCTTCGTTCCTAAATGTAAGTCTTT 59.346 38.462 0.00 0.00 0.00 2.52
2508 2557 6.013984 TCCCTTCGTTCCTAAATGTAAGTCTT 60.014 38.462 0.00 0.00 0.00 3.01
2509 2558 5.482878 TCCCTTCGTTCCTAAATGTAAGTCT 59.517 40.000 0.00 0.00 0.00 3.24
2510 2559 5.727434 TCCCTTCGTTCCTAAATGTAAGTC 58.273 41.667 0.00 0.00 0.00 3.01
2511 2560 5.247792 ACTCCCTTCGTTCCTAAATGTAAGT 59.752 40.000 0.00 0.00 0.00 2.24
2512 2561 5.731591 ACTCCCTTCGTTCCTAAATGTAAG 58.268 41.667 0.00 0.00 0.00 2.34
2513 2562 5.750352 ACTCCCTTCGTTCCTAAATGTAA 57.250 39.130 0.00 0.00 0.00 2.41
2514 2563 8.716674 ATATACTCCCTTCGTTCCTAAATGTA 57.283 34.615 0.00 0.00 0.00 2.29
2515 2564 5.952347 ATACTCCCTTCGTTCCTAAATGT 57.048 39.130 0.00 0.00 0.00 2.71
2516 2565 8.804204 AGTATATACTCCCTTCGTTCCTAAATG 58.196 37.037 9.71 0.00 0.00 2.32
2517 2566 8.953223 AGTATATACTCCCTTCGTTCCTAAAT 57.047 34.615 9.71 0.00 0.00 1.40
2518 2567 9.289782 GTAGTATATACTCCCTTCGTTCCTAAA 57.710 37.037 18.68 0.00 37.73 1.85
2519 2568 8.664079 AGTAGTATATACTCCCTTCGTTCCTAA 58.336 37.037 18.68 0.00 37.73 2.69
2520 2569 8.099537 CAGTAGTATATACTCCCTTCGTTCCTA 58.900 40.741 18.68 0.00 37.73 2.94
2521 2570 6.941436 CAGTAGTATATACTCCCTTCGTTCCT 59.059 42.308 18.68 0.00 37.73 3.36
2522 2571 6.714356 ACAGTAGTATATACTCCCTTCGTTCC 59.286 42.308 18.68 0.00 37.73 3.62
2523 2572 7.742556 ACAGTAGTATATACTCCCTTCGTTC 57.257 40.000 18.68 1.21 37.73 3.95
2524 2573 7.559170 ACAACAGTAGTATATACTCCCTTCGTT 59.441 37.037 18.68 13.04 37.73 3.85
2525 2574 7.059156 ACAACAGTAGTATATACTCCCTTCGT 58.941 38.462 18.68 8.49 37.73 3.85
2526 2575 7.507733 ACAACAGTAGTATATACTCCCTTCG 57.492 40.000 18.68 7.91 37.73 3.79
2545 2594 6.040278 TGGAGCAATTCTGTTCATTAACAACA 59.960 34.615 0.00 2.63 44.79 3.33
2546 2595 6.446318 TGGAGCAATTCTGTTCATTAACAAC 58.554 36.000 0.00 0.00 44.79 3.32
2575 2624 1.985614 CACACCATCTCAGGCCTGA 59.014 57.895 33.04 33.04 38.06 3.86
2713 2763 1.974236 GGAGGGAGTAGATGGGTGATG 59.026 57.143 0.00 0.00 0.00 3.07
2716 2766 0.397254 ACGGAGGGAGTAGATGGGTG 60.397 60.000 0.00 0.00 0.00 4.61
2726 2776 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
2728 2778 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
2729 2779 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
2730 2780 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
2731 2781 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
2732 2782 8.336080 GCTAGAAAGACAAATATTTAGGAACGG 58.664 37.037 0.00 0.00 0.00 4.44
2733 2783 8.336080 GGCTAGAAAGACAAATATTTAGGAACG 58.664 37.037 0.00 0.00 0.00 3.95
2734 2784 9.174166 TGGCTAGAAAGACAAATATTTAGGAAC 57.826 33.333 0.00 0.00 38.01 3.62
2735 2785 9.920946 ATGGCTAGAAAGACAAATATTTAGGAA 57.079 29.630 0.00 0.00 46.32 3.36
2736 2786 9.561069 GATGGCTAGAAAGACAAATATTTAGGA 57.439 33.333 0.00 0.00 46.32 2.94
2737 2787 9.566432 AGATGGCTAGAAAGACAAATATTTAGG 57.434 33.333 0.00 0.00 46.32 2.69
2740 2790 9.466497 TTGAGATGGCTAGAAAGACAAATATTT 57.534 29.630 0.00 0.00 46.32 1.40
2741 2791 9.466497 TTTGAGATGGCTAGAAAGACAAATATT 57.534 29.630 0.00 0.00 46.32 1.28
2742 2792 9.638176 ATTTGAGATGGCTAGAAAGACAAATAT 57.362 29.630 0.00 0.00 46.32 1.28
2743 2793 8.896744 CATTTGAGATGGCTAGAAAGACAAATA 58.103 33.333 0.00 0.00 46.32 1.40
2744 2794 7.147949 CCATTTGAGATGGCTAGAAAGACAAAT 60.148 37.037 0.00 0.00 46.32 2.32
2745 2795 6.151648 CCATTTGAGATGGCTAGAAAGACAAA 59.848 38.462 0.00 0.00 46.32 2.83
2746 2796 5.649395 CCATTTGAGATGGCTAGAAAGACAA 59.351 40.000 0.00 0.00 46.32 3.18
2748 2798 5.295540 GTCCATTTGAGATGGCTAGAAAGAC 59.704 44.000 0.00 0.00 39.01 3.01
2749 2799 5.190528 AGTCCATTTGAGATGGCTAGAAAGA 59.809 40.000 0.00 0.00 39.01 2.52
2750 2800 5.435291 AGTCCATTTGAGATGGCTAGAAAG 58.565 41.667 0.00 0.00 39.01 2.62
2751 2801 5.441718 AGTCCATTTGAGATGGCTAGAAA 57.558 39.130 0.00 0.00 39.01 2.52
2752 2802 5.425217 TGTAGTCCATTTGAGATGGCTAGAA 59.575 40.000 0.00 0.00 39.01 2.10
2753 2803 4.962362 TGTAGTCCATTTGAGATGGCTAGA 59.038 41.667 0.00 0.00 39.01 2.43
2754 2804 5.282055 TGTAGTCCATTTGAGATGGCTAG 57.718 43.478 0.00 0.00 39.01 3.42
2755 2805 5.692115 TTGTAGTCCATTTGAGATGGCTA 57.308 39.130 0.00 0.33 39.01 3.93
2756 2806 4.574674 TTGTAGTCCATTTGAGATGGCT 57.425 40.909 0.00 1.24 39.01 4.75
2757 2807 8.671921 CATATATTGTAGTCCATTTGAGATGGC 58.328 37.037 0.00 0.00 39.01 4.40
2758 2808 9.170734 CCATATATTGTAGTCCATTTGAGATGG 57.829 37.037 0.00 0.00 40.48 3.51
2759 2809 9.948964 TCCATATATTGTAGTCCATTTGAGATG 57.051 33.333 0.00 0.00 0.00 2.90
2761 2811 9.948964 CATCCATATATTGTAGTCCATTTGAGA 57.051 33.333 0.00 0.00 0.00 3.27
2762 2812 9.730705 ACATCCATATATTGTAGTCCATTTGAG 57.269 33.333 0.00 0.00 0.00 3.02
2781 2831 9.770097 CTCTAAAACATGACTACATACATCCAT 57.230 33.333 0.00 0.00 35.09 3.41
2782 2832 8.758829 ACTCTAAAACATGACTACATACATCCA 58.241 33.333 0.00 0.00 35.09 3.41
2783 2833 9.035607 CACTCTAAAACATGACTACATACATCC 57.964 37.037 0.00 0.00 35.09 3.51
2784 2834 9.587772 ACACTCTAAAACATGACTACATACATC 57.412 33.333 0.00 0.00 35.09 3.06
2790 2840 9.856488 GAATCTACACTCTAAAACATGACTACA 57.144 33.333 0.00 0.00 0.00 2.74
2791 2841 9.856488 TGAATCTACACTCTAAAACATGACTAC 57.144 33.333 0.00 0.00 0.00 2.73
2793 2843 9.950496 AATGAATCTACACTCTAAAACATGACT 57.050 29.630 0.00 0.00 0.00 3.41
2795 2845 9.942850 TGAATGAATCTACACTCTAAAACATGA 57.057 29.630 0.00 0.00 0.00 3.07
2802 2852 9.453572 AGCAAAATGAATGAATCTACACTCTAA 57.546 29.630 0.00 0.00 0.00 2.10
2803 2853 9.102757 GAGCAAAATGAATGAATCTACACTCTA 57.897 33.333 0.00 0.00 0.00 2.43
2804 2854 7.066766 GGAGCAAAATGAATGAATCTACACTCT 59.933 37.037 0.00 0.00 0.00 3.24
2805 2855 7.192232 GGAGCAAAATGAATGAATCTACACTC 58.808 38.462 0.00 0.00 0.00 3.51
2806 2856 6.183360 CGGAGCAAAATGAATGAATCTACACT 60.183 38.462 0.00 0.00 0.00 3.55
2807 2857 5.967674 CGGAGCAAAATGAATGAATCTACAC 59.032 40.000 0.00 0.00 0.00 2.90
2808 2858 5.647658 ACGGAGCAAAATGAATGAATCTACA 59.352 36.000 0.00 0.00 0.00 2.74
2809 2859 6.124088 ACGGAGCAAAATGAATGAATCTAC 57.876 37.500 0.00 0.00 0.00 2.59
2810 2860 9.725019 ATATACGGAGCAAAATGAATGAATCTA 57.275 29.630 0.00 0.00 0.00 1.98
2811 2861 6.949352 ATACGGAGCAAAATGAATGAATCT 57.051 33.333 0.00 0.00 0.00 2.40
2812 2862 9.979270 CTATATACGGAGCAAAATGAATGAATC 57.021 33.333 0.00 0.00 0.00 2.52
2813 2863 9.507329 ACTATATACGGAGCAAAATGAATGAAT 57.493 29.630 0.00 0.00 0.00 2.57
2814 2864 8.902540 ACTATATACGGAGCAAAATGAATGAA 57.097 30.769 0.00 0.00 0.00 2.57
2815 2865 8.147704 TGACTATATACGGAGCAAAATGAATGA 58.852 33.333 0.00 0.00 0.00 2.57
2816 2866 8.310406 TGACTATATACGGAGCAAAATGAATG 57.690 34.615 0.00 0.00 0.00 2.67
2817 2867 9.507329 AATGACTATATACGGAGCAAAATGAAT 57.493 29.630 0.00 0.00 0.00 2.57
2818 2868 8.902540 AATGACTATATACGGAGCAAAATGAA 57.097 30.769 0.00 0.00 0.00 2.57
2819 2869 8.902540 AAATGACTATATACGGAGCAAAATGA 57.097 30.769 0.00 0.00 0.00 2.57
2823 2873 9.990360 TCAATAAATGACTATATACGGAGCAAA 57.010 29.630 0.00 0.00 31.50 3.68
2824 2874 9.990360 TTCAATAAATGACTATATACGGAGCAA 57.010 29.630 0.00 0.00 37.92 3.91
2825 2875 9.990360 TTTCAATAAATGACTATATACGGAGCA 57.010 29.630 0.00 0.00 37.92 4.26
2854 2904 9.595823 CCGTTCCTAAATAATTGTCTTTCTAGA 57.404 33.333 0.00 0.00 0.00 2.43
2855 2905 9.595823 TCCGTTCCTAAATAATTGTCTTTCTAG 57.404 33.333 0.00 0.00 0.00 2.43
2856 2906 9.595823 CTCCGTTCCTAAATAATTGTCTTTCTA 57.404 33.333 0.00 0.00 0.00 2.10
2857 2907 7.553044 CCTCCGTTCCTAAATAATTGTCTTTCT 59.447 37.037 0.00 0.00 0.00 2.52
2858 2908 7.201705 CCCTCCGTTCCTAAATAATTGTCTTTC 60.202 40.741 0.00 0.00 0.00 2.62
2859 2909 6.602009 CCCTCCGTTCCTAAATAATTGTCTTT 59.398 38.462 0.00 0.00 0.00 2.52
2860 2910 6.069847 TCCCTCCGTTCCTAAATAATTGTCTT 60.070 38.462 0.00 0.00 0.00 3.01
2861 2911 5.427481 TCCCTCCGTTCCTAAATAATTGTCT 59.573 40.000 0.00 0.00 0.00 3.41
2862 2912 5.677567 TCCCTCCGTTCCTAAATAATTGTC 58.322 41.667 0.00 0.00 0.00 3.18
2863 2913 5.191124 ACTCCCTCCGTTCCTAAATAATTGT 59.809 40.000 0.00 0.00 0.00 2.71
2864 2914 5.681639 ACTCCCTCCGTTCCTAAATAATTG 58.318 41.667 0.00 0.00 0.00 2.32
2865 2915 5.970501 ACTCCCTCCGTTCCTAAATAATT 57.029 39.130 0.00 0.00 0.00 1.40
2866 2916 6.141790 ACTACTCCCTCCGTTCCTAAATAAT 58.858 40.000 0.00 0.00 0.00 1.28
2867 2917 5.522641 ACTACTCCCTCCGTTCCTAAATAA 58.477 41.667 0.00 0.00 0.00 1.40
2868 2918 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
2869 2919 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
2870 2920 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
2871 2921 3.463048 AACTACTCCCTCCGTTCCTAA 57.537 47.619 0.00 0.00 0.00 2.69
2872 2922 3.094572 CAAACTACTCCCTCCGTTCCTA 58.905 50.000 0.00 0.00 0.00 2.94
2873 2923 1.900486 CAAACTACTCCCTCCGTTCCT 59.100 52.381 0.00 0.00 0.00 3.36
2874 2924 1.675116 GCAAACTACTCCCTCCGTTCC 60.675 57.143 0.00 0.00 0.00 3.62
2875 2925 1.001633 TGCAAACTACTCCCTCCGTTC 59.998 52.381 0.00 0.00 0.00 3.95
2876 2926 1.053424 TGCAAACTACTCCCTCCGTT 58.947 50.000 0.00 0.00 0.00 4.44
2877 2927 1.053424 TTGCAAACTACTCCCTCCGT 58.947 50.000 0.00 0.00 0.00 4.69
2878 2928 2.280628 GATTGCAAACTACTCCCTCCG 58.719 52.381 1.71 0.00 0.00 4.63
2879 2929 3.274288 CTGATTGCAAACTACTCCCTCC 58.726 50.000 1.71 0.00 0.00 4.30
2880 2930 3.686726 CACTGATTGCAAACTACTCCCTC 59.313 47.826 1.71 0.00 0.00 4.30
2881 2931 3.327757 TCACTGATTGCAAACTACTCCCT 59.672 43.478 1.71 0.00 0.00 4.20
2882 2932 3.674997 TCACTGATTGCAAACTACTCCC 58.325 45.455 1.71 0.00 0.00 4.30
2883 2933 5.689383 TTTCACTGATTGCAAACTACTCC 57.311 39.130 1.71 0.00 0.00 3.85
2884 2934 6.150140 AGGATTTCACTGATTGCAAACTACTC 59.850 38.462 1.71 0.00 0.00 2.59
2885 2935 6.006449 AGGATTTCACTGATTGCAAACTACT 58.994 36.000 1.71 0.00 0.00 2.57
2886 2936 6.259550 AGGATTTCACTGATTGCAAACTAC 57.740 37.500 1.71 0.00 0.00 2.73
2894 2944 6.632909 TGGCATAAAAGGATTTCACTGATTG 58.367 36.000 0.00 0.00 37.28 2.67
2899 2949 6.211184 TCACAATGGCATAAAAGGATTTCACT 59.789 34.615 0.00 0.00 37.28 3.41
2916 2966 7.118390 GGAATAATCCTCGATTACTCACAATGG 59.882 40.741 5.52 0.00 42.93 3.16
2947 2997 5.450818 TTCCAAGCAGAATGGGTATTACT 57.549 39.130 0.00 0.00 38.54 2.24
2948 2998 6.998673 ACTATTCCAAGCAGAATGGGTATTAC 59.001 38.462 10.67 0.00 38.62 1.89
2949 2999 7.149202 ACTATTCCAAGCAGAATGGGTATTA 57.851 36.000 10.67 0.00 38.62 0.98
2950 3000 6.018433 ACTATTCCAAGCAGAATGGGTATT 57.982 37.500 10.67 0.00 38.62 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.