Multiple sequence alignment - TraesCS2B01G353000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G353000 chr2B 100.000 3034 0 0 1 3034 503776422 503773389 0.000000e+00 5603.0
1 TraesCS2B01G353000 chr2B 82.258 186 26 6 93 276 418292535 418292355 1.460000e-33 154.0
2 TraesCS2B01G353000 chr2B 83.704 135 7 7 2254 2385 503773717 503773595 2.470000e-21 113.0
3 TraesCS2B01G353000 chr2B 83.704 135 7 7 2706 2828 503774169 503774038 2.470000e-21 113.0
4 TraesCS2B01G353000 chr2B 87.879 66 7 1 2029 2094 568734089 568734153 3.240000e-10 76.8
5 TraesCS2B01G353000 chr2B 97.143 35 1 0 2068 2102 134608162 134608128 3.270000e-05 60.2
6 TraesCS2B01G353000 chr2B 100.000 29 0 0 2547 2575 771282538 771282510 2.000000e-03 54.7
7 TraesCS2B01G353000 chr2A 91.805 2050 129 22 1 2034 561550646 561552672 0.000000e+00 2819.0
8 TraesCS2B01G353000 chr2A 91.537 449 27 2 2093 2540 561553036 561553474 2.590000e-170 608.0
9 TraesCS2B01G353000 chr2A 87.469 399 27 13 2635 3033 561553495 561553870 3.590000e-119 438.0
10 TraesCS2B01G353000 chr2A 79.375 160 10 6 2227 2382 561553527 561553667 1.160000e-14 91.6
11 TraesCS2B01G353000 chr2D 92.714 1496 64 18 561 2034 426947934 426946462 0.000000e+00 2117.0
12 TraesCS2B01G353000 chr2D 95.344 451 18 3 2092 2540 426946033 426945584 0.000000e+00 713.0
13 TraesCS2B01G353000 chr2D 92.431 436 32 1 1 436 426948748 426948314 3.320000e-174 621.0
14 TraesCS2B01G353000 chr2D 87.908 306 16 5 2635 2940 426945563 426945279 1.040000e-89 340.0
15 TraesCS2B01G353000 chr2D 80.307 391 67 9 99 486 351998974 351998591 1.380000e-73 287.0
16 TraesCS2B01G353000 chr2D 82.857 140 7 9 2710 2834 426945868 426945731 3.200000e-20 110.0
17 TraesCS2B01G353000 chr2D 88.372 86 10 0 2227 2312 426945531 426945446 1.490000e-18 104.0
18 TraesCS2B01G353000 chr2D 100.000 29 0 0 2547 2575 628252785 628252757 2.000000e-03 54.7
19 TraesCS2B01G353000 chr7A 79.619 525 74 20 4 502 497815144 497815661 2.240000e-91 346.0
20 TraesCS2B01G353000 chr7A 100.000 41 0 0 2029 2069 2678029 2678069 3.240000e-10 76.8
21 TraesCS2B01G353000 chr7A 95.556 45 2 0 2555 2599 529331847 529331803 4.200000e-09 73.1
22 TraesCS2B01G353000 chr7B 92.424 66 5 0 2029 2094 590117677 590117742 8.950000e-16 95.3
23 TraesCS2B01G353000 chr7B 92.308 39 1 1 2067 2103 472399830 472399792 2.000000e-03 54.7
24 TraesCS2B01G353000 chr6A 92.424 66 5 0 2029 2094 18885697 18885632 8.950000e-16 95.3
25 TraesCS2B01G353000 chr1A 97.826 46 1 0 2597 2642 418185540 418185585 2.510000e-11 80.5
26 TraesCS2B01G353000 chr4A 83.333 90 10 1 2552 2636 636655385 636655296 9.020000e-11 78.7
27 TraesCS2B01G353000 chrUn 100.000 41 0 0 2029 2069 65676677 65676717 3.240000e-10 76.8
28 TraesCS2B01G353000 chrUn 95.122 41 2 0 2054 2094 287061112 287061152 7.020000e-07 65.8
29 TraesCS2B01G353000 chr5D 100.000 41 0 0 2029 2069 514202032 514202072 3.240000e-10 76.8
30 TraesCS2B01G353000 chr5D 100.000 29 0 0 2547 2575 15569320 15569348 2.000000e-03 54.7
31 TraesCS2B01G353000 chr3D 91.379 58 1 3 2029 2086 357100169 357100222 3.240000e-10 76.8
32 TraesCS2B01G353000 chr3D 95.122 41 2 0 2054 2094 570115758 570115798 7.020000e-07 65.8
33 TraesCS2B01G353000 chr3B 100.000 41 0 0 2029 2069 161708642 161708682 3.240000e-10 76.8
34 TraesCS2B01G353000 chr3B 97.059 34 1 0 2068 2101 792739581 792739548 1.170000e-04 58.4
35 TraesCS2B01G353000 chr1B 100.000 41 0 0 2029 2069 640967397 640967437 3.240000e-10 76.8
36 TraesCS2B01G353000 chr4D 80.808 99 10 5 2547 2640 446912629 446912535 5.430000e-08 69.4
37 TraesCS2B01G353000 chr4D 79.167 96 11 5 2548 2638 119749701 119749610 1.170000e-04 58.4
38 TraesCS2B01G353000 chr6D 79.381 97 11 4 2548 2639 417354695 417354787 3.270000e-05 60.2
39 TraesCS2B01G353000 chr5B 81.707 82 2 6 2029 2105 491251560 491251633 4.230000e-04 56.5
40 TraesCS2B01G353000 chr6B 100.000 29 0 0 2547 2575 508008219 508008191 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G353000 chr2B 503773389 503776422 3033 True 1943.00 5603 89.136000 1 3034 3 chr2B.!!$R4 3033
1 TraesCS2B01G353000 chr2A 561550646 561553870 3224 False 989.15 2819 87.546500 1 3033 4 chr2A.!!$F1 3032
2 TraesCS2B01G353000 chr2D 426945279 426948748 3469 True 667.50 2117 89.937667 1 2940 6 chr2D.!!$R3 2939
3 TraesCS2B01G353000 chr7A 497815144 497815661 517 False 346.00 346 79.619000 4 502 1 chr7A.!!$F2 498

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
60 61 0.030101 CCGATTTGTTGGTTGTGCGT 59.970 50.0 0.00 0.0 0.0 5.24 F
1056 1383 1.228657 GGAAGCGCAAAAGACCTCGT 61.229 55.0 11.47 0.0 0.0 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1078 1405 0.102663 GTTCCGTTCCGATCCTCCTC 59.897 60.0 0.00 0.00 0.0 3.71 R
2299 3031 0.036022 ACTTCTGACTTCTGCAGGGC 59.964 55.0 15.13 0.47 34.2 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 0.030101 CCGATTTGTTGGTTGTGCGT 59.970 50.000 0.00 0.00 0.00 5.24
75 76 5.335348 GGTTGTGCGTGTTAATAAATCACCT 60.335 40.000 0.00 0.00 0.00 4.00
91 92 3.089284 TCACCTGAAACTGATCTAGCGA 58.911 45.455 0.00 0.00 0.00 4.93
136 137 6.148948 TGCAAAACTGAATGCACATACTAAC 58.851 36.000 0.00 0.00 46.87 2.34
205 207 7.715249 AGAACAAGAGAAAACATGTTAGCACTA 59.285 33.333 12.39 0.00 36.22 2.74
402 427 3.789224 CAGAAAAACTTGGGAAAACGACG 59.211 43.478 0.00 0.00 0.00 5.12
404 429 2.041251 AAACTTGGGAAAACGACGGA 57.959 45.000 0.00 0.00 0.00 4.69
452 477 6.041423 TGCATGAAACAGAGAACAGATAGA 57.959 37.500 0.00 0.00 0.00 1.98
456 481 7.095060 GCATGAAACAGAGAACAGATAGAACAA 60.095 37.037 0.00 0.00 0.00 2.83
478 505 3.048501 CACGAATGGATGAGTGAGATCG 58.951 50.000 0.00 0.00 36.79 3.69
546 847 1.388547 AGAAAAACTGACGGCTGCAA 58.611 45.000 0.50 0.00 0.00 4.08
566 867 4.263800 CAAGCGTTTTCATAGATGCGTAC 58.736 43.478 0.00 0.00 33.12 3.67
579 896 2.798847 GATGCGTACCCCTACGAATTTC 59.201 50.000 4.50 0.00 43.61 2.17
613 930 3.568538 GCACACAAACTAAGATTGCCAG 58.431 45.455 0.00 0.00 0.00 4.85
727 1044 4.318332 TCACTTTCACATCCTTGCTACTG 58.682 43.478 0.00 0.00 0.00 2.74
728 1045 4.067896 CACTTTCACATCCTTGCTACTGT 58.932 43.478 0.00 0.00 0.00 3.55
730 1047 3.334583 TTCACATCCTTGCTACTGTCC 57.665 47.619 0.00 0.00 0.00 4.02
777 1104 1.902508 AGGCAAAGCTAGCTGTGAGTA 59.097 47.619 34.56 0.00 33.20 2.59
854 1181 1.448540 CGTCCCATCACCAGCTGTC 60.449 63.158 13.81 0.00 0.00 3.51
1056 1383 1.228657 GGAAGCGCAAAAGACCTCGT 61.229 55.000 11.47 0.00 0.00 4.18
1137 1469 3.469739 TCCAGTTTACTTTGGGTTCGTC 58.530 45.455 0.00 0.00 35.13 4.20
1314 1652 2.177531 CCGGTCAGGTACGTCGTG 59.822 66.667 8.47 0.00 34.51 4.35
1319 1657 0.040958 GTCAGGTACGTCGTGTCGTT 60.041 55.000 8.47 0.00 43.80 3.85
1326 1664 2.774951 CGTCGTGTCGTTCGCCATC 61.775 63.158 0.00 0.00 0.00 3.51
1328 1666 2.431771 CGTGTCGTTCGCCATCCA 60.432 61.111 0.00 0.00 0.00 3.41
1420 1758 0.106918 TCTTTGACGCCCTTGTTGGT 60.107 50.000 0.00 0.00 0.00 3.67
1421 1759 0.310854 CTTTGACGCCCTTGTTGGTC 59.689 55.000 0.00 0.00 0.00 4.02
1523 1861 1.514873 GACCAAGGTACGTACGCGG 60.515 63.158 16.72 19.24 43.45 6.46
1613 1951 1.202203 TTCTTGTCGTCGTGTTTCGG 58.798 50.000 0.00 0.00 40.32 4.30
1635 1973 4.141801 GGGCTCATGGGGTTTTAATTTACC 60.142 45.833 0.00 0.00 0.00 2.85
1795 2144 2.124695 GGATGCTTCCGTGGGTCC 60.125 66.667 2.39 0.00 30.72 4.46
1909 2261 5.144100 TGATTCCATTGTTGTTGTAGGGTT 58.856 37.500 0.00 0.00 0.00 4.11
1910 2262 4.927978 TTCCATTGTTGTTGTAGGGTTG 57.072 40.909 0.00 0.00 0.00 3.77
1911 2263 3.904717 TCCATTGTTGTTGTAGGGTTGT 58.095 40.909 0.00 0.00 0.00 3.32
1912 2264 5.050126 TCCATTGTTGTTGTAGGGTTGTA 57.950 39.130 0.00 0.00 0.00 2.41
1913 2265 4.822896 TCCATTGTTGTTGTAGGGTTGTAC 59.177 41.667 0.00 0.00 0.00 2.90
1914 2266 4.825085 CCATTGTTGTTGTAGGGTTGTACT 59.175 41.667 0.00 0.00 0.00 2.73
1996 2348 7.392393 GCTGTTCTTCCCCTAAACAAACTTATA 59.608 37.037 0.00 0.00 32.89 0.98
1999 2351 7.875327 TCTTCCCCTAAACAAACTTATATGC 57.125 36.000 0.00 0.00 0.00 3.14
2030 2382 0.673437 TTGTTACTGCTTGCTTGCCC 59.327 50.000 0.00 0.00 0.00 5.36
2034 2386 2.803155 TACTGCTTGCTTGCCCTCCG 62.803 60.000 0.00 0.00 0.00 4.63
2036 2388 2.985847 GCTTGCTTGCCCTCCGTT 60.986 61.111 0.00 0.00 0.00 4.44
2038 2390 2.282180 TTGCTTGCCCTCCGTTCC 60.282 61.111 0.00 0.00 0.00 3.62
2040 2392 2.282180 GCTTGCCCTCCGTTCCAA 60.282 61.111 0.00 0.00 0.00 3.53
2041 2393 1.901464 GCTTGCCCTCCGTTCCAAA 60.901 57.895 0.00 0.00 0.00 3.28
2042 2394 1.460273 GCTTGCCCTCCGTTCCAAAA 61.460 55.000 0.00 0.00 0.00 2.44
2044 2396 2.442413 CTTGCCCTCCGTTCCAAAATA 58.558 47.619 0.00 0.00 0.00 1.40
2045 2397 2.588464 TGCCCTCCGTTCCAAAATAA 57.412 45.000 0.00 0.00 0.00 1.40
2046 2398 2.877866 TGCCCTCCGTTCCAAAATAAA 58.122 42.857 0.00 0.00 0.00 1.40
2048 2400 3.194542 TGCCCTCCGTTCCAAAATAAATG 59.805 43.478 0.00 0.00 0.00 2.32
2049 2401 3.445805 GCCCTCCGTTCCAAAATAAATGA 59.554 43.478 0.00 0.00 0.00 2.57
2050 2402 4.676986 GCCCTCCGTTCCAAAATAAATGAC 60.677 45.833 0.00 0.00 0.00 3.06
2051 2403 4.142249 CCCTCCGTTCCAAAATAAATGACC 60.142 45.833 0.00 0.00 0.00 4.02
2052 2404 4.142249 CCTCCGTTCCAAAATAAATGACCC 60.142 45.833 0.00 0.00 0.00 4.46
2053 2405 4.408276 TCCGTTCCAAAATAAATGACCCA 58.592 39.130 0.00 0.00 0.00 4.51
2054 2406 4.833380 TCCGTTCCAAAATAAATGACCCAA 59.167 37.500 0.00 0.00 0.00 4.12
2055 2407 4.926832 CCGTTCCAAAATAAATGACCCAAC 59.073 41.667 0.00 0.00 0.00 3.77
2056 2408 5.279256 CCGTTCCAAAATAAATGACCCAACT 60.279 40.000 0.00 0.00 0.00 3.16
2057 2409 6.220201 CGTTCCAAAATAAATGACCCAACTT 58.780 36.000 0.00 0.00 0.00 2.66
2058 2410 6.704050 CGTTCCAAAATAAATGACCCAACTTT 59.296 34.615 0.00 0.00 0.00 2.66
2061 2413 8.251383 TCCAAAATAAATGACCCAACTTTGTA 57.749 30.769 0.00 0.00 0.00 2.41
2062 2414 8.145122 TCCAAAATAAATGACCCAACTTTGTAC 58.855 33.333 0.00 0.00 0.00 2.90
2063 2415 8.147704 CCAAAATAAATGACCCAACTTTGTACT 58.852 33.333 0.00 0.00 0.00 2.73
2069 2421 7.506328 AATGACCCAACTTTGTACTAAAGTC 57.494 36.000 17.83 9.95 39.36 3.01
2070 2422 5.991861 TGACCCAACTTTGTACTAAAGTCA 58.008 37.500 17.83 11.63 39.36 3.41
2071 2423 6.597562 TGACCCAACTTTGTACTAAAGTCAT 58.402 36.000 17.83 6.60 39.36 3.06
2072 2424 6.708949 TGACCCAACTTTGTACTAAAGTCATC 59.291 38.462 17.83 14.17 39.36 2.92
2073 2425 6.838382 ACCCAACTTTGTACTAAAGTCATCT 58.162 36.000 17.83 5.84 39.36 2.90
2075 2427 8.603304 ACCCAACTTTGTACTAAAGTCATCTAT 58.397 33.333 17.83 5.08 39.36 1.98
2084 2436 9.146984 TGTACTAAAGTCATCTATTTTGGAACG 57.853 33.333 0.00 0.00 0.00 3.95
2086 2438 7.391620 ACTAAAGTCATCTATTTTGGAACGGA 58.608 34.615 0.00 0.00 0.00 4.69
2087 2439 6.743575 AAAGTCATCTATTTTGGAACGGAG 57.256 37.500 0.00 0.00 0.00 4.63
2088 2440 5.677319 AGTCATCTATTTTGGAACGGAGA 57.323 39.130 0.00 0.00 0.00 3.71
2089 2441 5.665459 AGTCATCTATTTTGGAACGGAGAG 58.335 41.667 0.00 0.00 0.00 3.20
2090 2442 5.422331 AGTCATCTATTTTGGAACGGAGAGA 59.578 40.000 0.00 0.00 0.00 3.10
2276 3008 2.224281 TGAAGTGGTTGTCTGCTGGTAG 60.224 50.000 0.00 0.00 0.00 3.18
2299 3031 5.817816 AGCAAGGTTTATCAGATTTCCTACG 59.182 40.000 0.00 0.00 0.00 3.51
2387 3120 3.236816 GGAACACATGAATCTGTTTGCG 58.763 45.455 0.00 0.00 30.59 4.85
2393 3126 0.883153 TGAATCTGTTTGCGCTGCAT 59.117 45.000 9.73 0.00 38.76 3.96
2559 3300 6.503524 TGATTGCAAACAAAAGAAGTACTCC 58.496 36.000 6.97 0.00 39.77 3.85
2560 3301 4.911514 TGCAAACAAAAGAAGTACTCCC 57.088 40.909 0.00 0.00 0.00 4.30
2561 3302 4.532834 TGCAAACAAAAGAAGTACTCCCT 58.467 39.130 0.00 0.00 0.00 4.20
2562 3303 4.578928 TGCAAACAAAAGAAGTACTCCCTC 59.421 41.667 0.00 0.00 0.00 4.30
2563 3304 4.822350 GCAAACAAAAGAAGTACTCCCTCT 59.178 41.667 0.00 0.00 0.00 3.69
2564 3305 5.278022 GCAAACAAAAGAAGTACTCCCTCTG 60.278 44.000 0.00 1.55 0.00 3.35
2565 3306 5.632034 AACAAAAGAAGTACTCCCTCTGT 57.368 39.130 0.00 2.13 0.00 3.41
2566 3307 6.742559 AACAAAAGAAGTACTCCCTCTGTA 57.257 37.500 0.00 0.00 0.00 2.74
2567 3308 6.742559 ACAAAAGAAGTACTCCCTCTGTAA 57.257 37.500 0.00 0.00 0.00 2.41
2568 3309 7.133133 ACAAAAGAAGTACTCCCTCTGTAAA 57.867 36.000 0.00 0.00 0.00 2.01
2569 3310 6.990939 ACAAAAGAAGTACTCCCTCTGTAAAC 59.009 38.462 0.00 0.00 0.00 2.01
2570 3311 6.997942 AAAGAAGTACTCCCTCTGTAAACT 57.002 37.500 0.00 0.00 0.00 2.66
2571 3312 8.365647 CAAAAGAAGTACTCCCTCTGTAAACTA 58.634 37.037 0.00 0.00 0.00 2.24
2572 3313 8.488308 AAAGAAGTACTCCCTCTGTAAACTAA 57.512 34.615 0.00 0.00 0.00 2.24
2573 3314 8.667592 AAGAAGTACTCCCTCTGTAAACTAAT 57.332 34.615 0.00 0.00 0.00 1.73
2574 3315 9.765295 AAGAAGTACTCCCTCTGTAAACTAATA 57.235 33.333 0.00 0.00 0.00 0.98
2575 3316 9.187996 AGAAGTACTCCCTCTGTAAACTAATAC 57.812 37.037 0.00 0.00 0.00 1.89
2576 3317 7.565323 AGTACTCCCTCTGTAAACTAATACG 57.435 40.000 0.00 0.00 0.00 3.06
2577 3318 7.115414 AGTACTCCCTCTGTAAACTAATACGT 58.885 38.462 0.00 0.00 0.00 3.57
2578 3319 8.267894 AGTACTCCCTCTGTAAACTAATACGTA 58.732 37.037 0.00 0.00 0.00 3.57
2579 3320 9.061435 GTACTCCCTCTGTAAACTAATACGTAT 57.939 37.037 1.14 1.14 0.00 3.06
2581 3322 9.632638 ACTCCCTCTGTAAACTAATACGTATAA 57.367 33.333 8.83 0.00 0.00 0.98
2583 3324 9.851686 TCCCTCTGTAAACTAATACGTATAAGA 57.148 33.333 8.83 0.00 0.00 2.10
2635 3376 9.877178 AGAACTTATGTTAGTTTACAGATGGAG 57.123 33.333 0.00 0.00 38.43 3.86
2636 3377 9.654663 GAACTTATGTTAGTTTACAGATGGAGT 57.345 33.333 0.00 0.00 38.43 3.85
2644 3385 3.906720 TTACAGATGGAGTACTTGCCC 57.093 47.619 0.00 0.00 0.00 5.36
2650 3391 2.107950 TGGAGTACTTGCCCGATTTG 57.892 50.000 0.00 0.00 0.00 2.32
2668 3409 7.307989 CCCGATTTGGTGAGATACATTTATGTC 60.308 40.741 0.00 0.00 37.93 3.06
2683 3424 8.677148 ACATTTATGTCGCTGGAACTATATTT 57.323 30.769 0.00 0.00 35.87 1.40
2684 3425 9.772973 ACATTTATGTCGCTGGAACTATATTTA 57.227 29.630 0.00 0.00 35.87 1.40
2687 3428 9.472361 TTTATGTCGCTGGAACTATATTTACTC 57.528 33.333 0.00 0.00 0.00 2.59
2688 3429 6.710597 TGTCGCTGGAACTATATTTACTCT 57.289 37.500 0.00 0.00 0.00 3.24
2689 3430 7.812690 TGTCGCTGGAACTATATTTACTCTA 57.187 36.000 0.00 0.00 0.00 2.43
2690 3431 8.405418 TGTCGCTGGAACTATATTTACTCTAT 57.595 34.615 0.00 0.00 0.00 1.98
2691 3432 9.511272 TGTCGCTGGAACTATATTTACTCTATA 57.489 33.333 0.00 0.00 0.00 1.31
2693 3434 8.675504 TCGCTGGAACTATATTTACTCTATAGC 58.324 37.037 0.00 0.00 34.06 2.97
2694 3435 7.916450 CGCTGGAACTATATTTACTCTATAGCC 59.084 40.741 0.00 0.00 34.06 3.93
2695 3436 8.973182 GCTGGAACTATATTTACTCTATAGCCT 58.027 37.037 0.00 0.00 34.06 4.58
2707 3448 9.878737 TTTACTCTATAGCCTATACTCCACTTT 57.121 33.333 0.00 0.00 0.00 2.66
2708 3449 9.517868 TTACTCTATAGCCTATACTCCACTTTC 57.482 37.037 0.00 0.00 0.00 2.62
2709 3450 7.527796 ACTCTATAGCCTATACTCCACTTTCA 58.472 38.462 0.00 0.00 0.00 2.69
2710 3451 8.005388 ACTCTATAGCCTATACTCCACTTTCAA 58.995 37.037 0.00 0.00 0.00 2.69
2711 3452 8.410673 TCTATAGCCTATACTCCACTTTCAAG 57.589 38.462 0.00 0.00 0.00 3.02
2712 3453 8.005388 TCTATAGCCTATACTCCACTTTCAAGT 58.995 37.037 0.00 0.00 40.60 3.16
2724 3465 2.427095 ACTTTCAAGTTGGTTGTCTGCC 59.573 45.455 2.34 0.00 35.21 4.85
2728 3469 0.395173 AAGTTGGTTGTCTGCCGGTT 60.395 50.000 1.90 0.00 0.00 4.44
2765 3506 0.610174 TCCTACAGCCTGCAGAAGTG 59.390 55.000 17.39 11.65 0.00 3.16
2782 3523 6.980416 AGAAGTGTTCTGTAACTCTAGGTT 57.020 37.500 0.00 0.00 38.23 3.50
2783 3524 7.362802 AGAAGTGTTCTGTAACTCTAGGTTT 57.637 36.000 2.53 0.00 38.23 3.27
2784 3525 7.435305 AGAAGTGTTCTGTAACTCTAGGTTTC 58.565 38.462 2.53 0.00 38.23 2.78
2785 3526 6.980416 AGTGTTCTGTAACTCTAGGTTTCT 57.020 37.500 2.53 0.00 37.60 2.52
2917 3658 8.821147 TGAATGAATTCAGATTTTGTGAAAGG 57.179 30.769 14.54 0.00 41.51 3.11
2947 3688 5.416952 CAGATATGGCAAACAAAGAGGAAGT 59.583 40.000 0.00 0.00 0.00 3.01
2948 3689 6.599244 CAGATATGGCAAACAAAGAGGAAGTA 59.401 38.462 0.00 0.00 0.00 2.24
2949 3690 6.599638 AGATATGGCAAACAAAGAGGAAGTAC 59.400 38.462 0.00 0.00 0.00 2.73
2951 3692 4.532834 TGGCAAACAAAGAGGAAGTACTT 58.467 39.130 8.13 8.13 0.00 2.24
2952 3693 4.338118 TGGCAAACAAAGAGGAAGTACTTG 59.662 41.667 14.14 0.00 0.00 3.16
2953 3694 4.290969 GCAAACAAAGAGGAAGTACTTGC 58.709 43.478 18.57 18.57 0.00 4.01
2954 3695 4.202010 GCAAACAAAGAGGAAGTACTTGCA 60.202 41.667 26.40 0.00 37.26 4.08
2955 3696 5.507985 GCAAACAAAGAGGAAGTACTTGCAT 60.508 40.000 26.40 13.41 37.26 3.96
2956 3697 5.695851 AACAAAGAGGAAGTACTTGCATG 57.304 39.130 26.40 20.11 33.04 4.06
2957 3698 4.074970 ACAAAGAGGAAGTACTTGCATGG 58.925 43.478 26.40 13.41 33.04 3.66
2958 3699 4.074970 CAAAGAGGAAGTACTTGCATGGT 58.925 43.478 26.40 8.02 33.04 3.55
2959 3700 4.373156 AAGAGGAAGTACTTGCATGGTT 57.627 40.909 26.40 12.23 33.04 3.67
2960 3701 4.373156 AGAGGAAGTACTTGCATGGTTT 57.627 40.909 26.40 6.93 33.04 3.27
2961 3702 4.729868 AGAGGAAGTACTTGCATGGTTTT 58.270 39.130 26.40 6.22 33.04 2.43
2962 3703 4.520492 AGAGGAAGTACTTGCATGGTTTTG 59.480 41.667 26.40 0.00 33.04 2.44
2963 3704 4.215109 AGGAAGTACTTGCATGGTTTTGT 58.785 39.130 26.40 2.19 33.04 2.83
2964 3705 4.037923 AGGAAGTACTTGCATGGTTTTGTG 59.962 41.667 26.40 0.00 33.04 3.33
2965 3706 4.037446 GGAAGTACTTGCATGGTTTTGTGA 59.963 41.667 20.93 0.00 0.00 3.58
2966 3707 4.836125 AGTACTTGCATGGTTTTGTGAG 57.164 40.909 4.44 0.00 0.00 3.51
2967 3708 4.460263 AGTACTTGCATGGTTTTGTGAGA 58.540 39.130 4.44 0.00 0.00 3.27
2968 3709 5.072741 AGTACTTGCATGGTTTTGTGAGAT 58.927 37.500 4.44 0.00 0.00 2.75
2975 3716 5.064579 TGCATGGTTTTGTGAGATGTATACG 59.935 40.000 0.00 0.00 0.00 3.06
2978 3719 3.875134 GGTTTTGTGAGATGTATACGGGG 59.125 47.826 0.00 0.00 0.00 5.73
3008 3749 1.202031 CGAGCCCGCTGTGAAAAATAC 60.202 52.381 0.00 0.00 0.00 1.89
3019 3760 3.816523 TGTGAAAAATACCAGTCCCGTTC 59.183 43.478 0.00 0.00 0.00 3.95
3033 3774 1.644786 CCGTTCGGAGGCATTTCACC 61.645 60.000 5.19 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 7.403312 AGCTAACATTAATATTTGTGGTGCA 57.597 32.000 0.00 0.00 0.00 4.57
35 36 1.953686 CAACCAACAAATCGGGACACT 59.046 47.619 0.00 0.00 0.00 3.55
60 61 9.739276 AGATCAGTTTCAGGTGATTTATTAACA 57.261 29.630 0.00 0.00 33.43 2.41
75 76 5.050490 GCCTATTTCGCTAGATCAGTTTCA 58.950 41.667 0.00 0.00 0.00 2.69
91 92 3.004315 CACGTTGGAACTTGTGCCTATTT 59.996 43.478 0.00 0.00 0.00 1.40
151 152 6.961360 AGTTACAATCTACGAGATGGATCA 57.039 37.500 0.00 0.00 34.65 2.92
230 232 8.482429 CAATTTCATTCTTCAAAGTGCACTAAC 58.518 33.333 22.01 0.00 0.00 2.34
231 233 8.412456 TCAATTTCATTCTTCAAAGTGCACTAA 58.588 29.630 22.01 10.04 29.70 2.24
269 272 5.130477 GTCACAGTTATGATTCTCCCCCTAA 59.870 44.000 0.00 0.00 0.00 2.69
357 381 2.938451 TCTCTTGCCTCAAATACGCATG 59.062 45.455 0.00 0.00 31.44 4.06
362 386 6.560253 TTTCTGTTCTCTTGCCTCAAATAC 57.440 37.500 0.00 0.00 0.00 1.89
419 444 5.239306 TCTCTGTTTCATGCATCGTTCTTTT 59.761 36.000 0.00 0.00 0.00 2.27
452 477 3.738982 TCACTCATCCATTCGTGTTGTT 58.261 40.909 0.00 0.00 0.00 2.83
456 481 3.489908 CGATCTCACTCATCCATTCGTGT 60.490 47.826 0.00 0.00 0.00 4.49
478 505 6.894828 TCTGTCCAATTACTTTTCTTTACGC 58.105 36.000 0.00 0.00 0.00 4.42
521 548 3.561725 CAGCCGTCAGTTTTTCTTTCTCT 59.438 43.478 0.00 0.00 0.00 3.10
522 549 3.850010 GCAGCCGTCAGTTTTTCTTTCTC 60.850 47.826 0.00 0.00 0.00 2.87
523 550 2.033424 GCAGCCGTCAGTTTTTCTTTCT 59.967 45.455 0.00 0.00 0.00 2.52
525 552 1.748493 TGCAGCCGTCAGTTTTTCTTT 59.252 42.857 0.00 0.00 0.00 2.52
534 835 2.392613 AAAACGCTTGCAGCCGTCAG 62.393 55.000 13.02 0.00 38.18 3.51
535 836 2.387125 GAAAACGCTTGCAGCCGTCA 62.387 55.000 13.02 0.00 38.18 4.35
546 847 2.864343 GGTACGCATCTATGAAAACGCT 59.136 45.455 0.00 0.00 0.00 5.07
555 856 2.574006 TCGTAGGGGTACGCATCTAT 57.426 50.000 12.45 0.00 46.88 1.98
566 867 2.159014 TGTGATCGGAAATTCGTAGGGG 60.159 50.000 0.00 0.00 0.00 4.79
579 896 0.950836 TGTGTGCCTTTTGTGATCGG 59.049 50.000 0.00 0.00 0.00 4.18
613 930 4.035675 GTCATCAACTTCGGGGATCAATTC 59.964 45.833 0.00 0.00 0.00 2.17
700 1017 4.037208 AGCAAGGATGTGAAAGTGAGTTTG 59.963 41.667 0.00 0.00 0.00 2.93
727 1044 2.342179 CGCTTTTCTCCTCTCTTGGAC 58.658 52.381 0.00 0.00 31.94 4.02
728 1045 1.338200 GCGCTTTTCTCCTCTCTTGGA 60.338 52.381 0.00 0.00 34.52 3.53
730 1047 0.718343 CGCGCTTTTCTCCTCTCTTG 59.282 55.000 5.56 0.00 0.00 3.02
777 1104 1.000896 CAGGCCCGTTGGAGGATTT 60.001 57.895 0.00 0.00 0.00 2.17
797 1124 2.187946 GGTGAGGTGATCGGCAGG 59.812 66.667 0.00 0.00 0.00 4.85
801 1128 1.142748 GAGCAGGTGAGGTGATCGG 59.857 63.158 0.00 0.00 0.00 4.18
854 1181 0.799917 CCGCTGTGATGACGTGAGAG 60.800 60.000 0.00 0.00 0.00 3.20
969 1296 1.153289 CTCTGATTGGGCCGAGTGG 60.153 63.158 0.00 0.00 38.77 4.00
970 1297 1.817099 GCTCTGATTGGGCCGAGTG 60.817 63.158 0.00 0.00 0.00 3.51
971 1298 2.586792 GCTCTGATTGGGCCGAGT 59.413 61.111 0.00 0.00 0.00 4.18
1078 1405 0.102663 GTTCCGTTCCGATCCTCCTC 59.897 60.000 0.00 0.00 0.00 3.71
1252 1584 2.672996 GGCAAGCAGGCGAGGAAA 60.673 61.111 0.00 0.00 33.57 3.13
1291 1629 0.324091 ACGTACCTGACCGGGAAGAT 60.324 55.000 6.32 0.00 36.97 2.40
1314 1652 1.082117 ACGAATGGATGGCGAACGAC 61.082 55.000 0.00 0.00 0.00 4.34
1319 1657 1.078497 AGCAACGAATGGATGGCGA 60.078 52.632 0.00 0.00 0.00 5.54
1326 1664 2.673368 GGTTGTAGAGAGCAACGAATGG 59.327 50.000 0.00 0.00 45.01 3.16
1328 1666 2.354805 GGGGTTGTAGAGAGCAACGAAT 60.355 50.000 0.00 0.00 45.01 3.34
1550 1888 3.364442 TTCGTCCCGAAGCCGTAA 58.636 55.556 0.00 0.00 41.05 3.18
1613 1951 4.440940 CGGTAAATTAAAACCCCATGAGCC 60.441 45.833 0.00 0.00 31.68 4.70
1712 2050 3.326578 TGGTGGTGGATGGGGTCG 61.327 66.667 0.00 0.00 0.00 4.79
1775 2113 1.899437 GACCCACGGAAGCATCCTCA 61.899 60.000 6.39 0.00 44.17 3.86
1795 2144 0.388520 TCACTCACGCTGGATGAACG 60.389 55.000 0.00 0.00 0.00 3.95
1865 2217 4.638865 TCAGAATCCAATGTGCAGATTCAG 59.361 41.667 21.10 15.71 45.39 3.02
1909 2261 7.238096 TCCCCTTTTCCTTTGATTAGTAGTACA 59.762 37.037 2.52 0.00 0.00 2.90
1910 2262 7.627311 TCCCCTTTTCCTTTGATTAGTAGTAC 58.373 38.462 0.00 0.00 0.00 2.73
1911 2263 7.817910 TCCCCTTTTCCTTTGATTAGTAGTA 57.182 36.000 0.00 0.00 0.00 1.82
1912 2264 6.713731 TCCCCTTTTCCTTTGATTAGTAGT 57.286 37.500 0.00 0.00 0.00 2.73
1913 2265 7.402862 TCTTCCCCTTTTCCTTTGATTAGTAG 58.597 38.462 0.00 0.00 0.00 2.57
1914 2266 7.337826 TCTTCCCCTTTTCCTTTGATTAGTA 57.662 36.000 0.00 0.00 0.00 1.82
1996 2348 8.567285 AGCAGTAACAAAACTAAGAATAGCAT 57.433 30.769 0.00 0.00 31.96 3.79
1999 2351 8.507249 AGCAAGCAGTAACAAAACTAAGAATAG 58.493 33.333 0.00 0.00 35.14 1.73
2030 2382 4.461081 TGGGTCATTTATTTTGGAACGGAG 59.539 41.667 0.00 0.00 0.00 4.63
2034 2386 7.497579 ACAAAGTTGGGTCATTTATTTTGGAAC 59.502 33.333 0.00 0.00 0.00 3.62
2036 2388 7.130681 ACAAAGTTGGGTCATTTATTTTGGA 57.869 32.000 0.00 0.00 0.00 3.53
2042 2394 9.582648 ACTTTAGTACAAAGTTGGGTCATTTAT 57.417 29.630 14.04 0.00 37.18 1.40
2044 2396 7.558444 TGACTTTAGTACAAAGTTGGGTCATTT 59.442 33.333 18.29 0.32 40.27 2.32
2045 2397 7.057894 TGACTTTAGTACAAAGTTGGGTCATT 58.942 34.615 18.29 0.84 40.27 2.57
2046 2398 6.597562 TGACTTTAGTACAAAGTTGGGTCAT 58.402 36.000 18.29 1.35 40.27 3.06
2048 2400 6.935208 AGATGACTTTAGTACAAAGTTGGGTC 59.065 38.462 18.29 14.57 40.27 4.46
2049 2401 6.838382 AGATGACTTTAGTACAAAGTTGGGT 58.162 36.000 18.29 9.49 40.27 4.51
2050 2402 9.449719 AATAGATGACTTTAGTACAAAGTTGGG 57.550 33.333 18.29 1.14 40.27 4.12
2058 2410 9.146984 CGTTCCAAAATAGATGACTTTAGTACA 57.853 33.333 0.00 0.00 0.00 2.90
2061 2413 7.391620 TCCGTTCCAAAATAGATGACTTTAGT 58.608 34.615 0.00 0.00 0.00 2.24
2062 2414 7.764443 TCTCCGTTCCAAAATAGATGACTTTAG 59.236 37.037 0.00 0.00 0.00 1.85
2063 2415 7.617225 TCTCCGTTCCAAAATAGATGACTTTA 58.383 34.615 0.00 0.00 0.00 1.85
2064 2416 6.472887 TCTCCGTTCCAAAATAGATGACTTT 58.527 36.000 0.00 0.00 0.00 2.66
2065 2417 6.049955 TCTCCGTTCCAAAATAGATGACTT 57.950 37.500 0.00 0.00 0.00 3.01
2066 2418 5.422331 TCTCTCCGTTCCAAAATAGATGACT 59.578 40.000 0.00 0.00 0.00 3.41
2067 2419 5.661458 TCTCTCCGTTCCAAAATAGATGAC 58.339 41.667 0.00 0.00 0.00 3.06
2069 2421 5.665459 ACTCTCTCCGTTCCAAAATAGATG 58.335 41.667 0.00 0.00 0.00 2.90
2070 2422 5.941555 ACTCTCTCCGTTCCAAAATAGAT 57.058 39.130 0.00 0.00 0.00 1.98
2071 2423 5.950549 ACTACTCTCTCCGTTCCAAAATAGA 59.049 40.000 0.00 0.00 0.00 1.98
2072 2424 6.210287 ACTACTCTCTCCGTTCCAAAATAG 57.790 41.667 0.00 0.00 0.00 1.73
2073 2425 6.209986 TGAACTACTCTCTCCGTTCCAAAATA 59.790 38.462 0.00 0.00 35.97 1.40
2075 2427 4.342951 TGAACTACTCTCTCCGTTCCAAAA 59.657 41.667 0.00 0.00 35.97 2.44
2077 2429 3.493334 TGAACTACTCTCTCCGTTCCAA 58.507 45.455 0.00 0.00 35.97 3.53
2078 2430 3.082548 CTGAACTACTCTCTCCGTTCCA 58.917 50.000 0.00 0.00 35.97 3.53
2079 2431 3.345414 TCTGAACTACTCTCTCCGTTCC 58.655 50.000 0.00 0.00 35.97 3.62
2080 2432 5.276963 CGTATCTGAACTACTCTCTCCGTTC 60.277 48.000 0.00 0.00 37.02 3.95
2084 2436 5.235616 CAGTCGTATCTGAACTACTCTCTCC 59.764 48.000 0.00 0.00 37.61 3.71
2086 2438 4.573201 GCAGTCGTATCTGAACTACTCTCT 59.427 45.833 8.59 0.00 37.61 3.10
2087 2439 4.551217 CGCAGTCGTATCTGAACTACTCTC 60.551 50.000 8.59 0.00 37.61 3.20
2088 2440 3.310227 CGCAGTCGTATCTGAACTACTCT 59.690 47.826 8.59 0.00 37.61 3.24
2089 2441 3.609475 CGCAGTCGTATCTGAACTACTC 58.391 50.000 8.59 0.00 37.61 2.59
2090 2442 2.223294 GCGCAGTCGTATCTGAACTACT 60.223 50.000 0.30 0.00 37.61 2.57
2225 2956 4.092968 CGAGTAAATGTAGTTCCAGCAACC 59.907 45.833 0.00 0.00 35.28 3.77
2276 3008 5.504173 GCGTAGGAAATCTGATAAACCTTGC 60.504 44.000 12.82 13.00 0.00 4.01
2299 3031 0.036022 ACTTCTGACTTCTGCAGGGC 59.964 55.000 15.13 0.47 34.20 5.19
2387 3120 0.965439 TTTGTACCAACCCATGCAGC 59.035 50.000 0.00 0.00 0.00 5.25
2393 3126 0.538516 AGCGCATTTGTACCAACCCA 60.539 50.000 11.47 0.00 0.00 4.51
2609 3350 9.877178 CTCCATCTGTAAACTAACATAAGTTCT 57.123 33.333 0.00 0.00 38.76 3.01
2610 3351 9.654663 ACTCCATCTGTAAACTAACATAAGTTC 57.345 33.333 0.00 0.00 38.76 3.01
2616 3357 7.549488 GCAAGTACTCCATCTGTAAACTAACAT 59.451 37.037 0.00 0.00 0.00 2.71
2617 3358 6.872020 GCAAGTACTCCATCTGTAAACTAACA 59.128 38.462 0.00 0.00 0.00 2.41
2618 3359 6.313164 GGCAAGTACTCCATCTGTAAACTAAC 59.687 42.308 0.00 0.00 0.00 2.34
2619 3360 6.403878 GGCAAGTACTCCATCTGTAAACTAA 58.596 40.000 0.00 0.00 0.00 2.24
2620 3361 5.105064 GGGCAAGTACTCCATCTGTAAACTA 60.105 44.000 0.00 0.00 0.00 2.24
2621 3362 4.323562 GGGCAAGTACTCCATCTGTAAACT 60.324 45.833 0.00 0.00 0.00 2.66
2622 3363 3.939592 GGGCAAGTACTCCATCTGTAAAC 59.060 47.826 0.00 0.00 0.00 2.01
2623 3364 3.369052 CGGGCAAGTACTCCATCTGTAAA 60.369 47.826 0.00 0.00 0.00 2.01
2624 3365 2.167693 CGGGCAAGTACTCCATCTGTAA 59.832 50.000 0.00 0.00 0.00 2.41
2625 3366 1.754803 CGGGCAAGTACTCCATCTGTA 59.245 52.381 0.00 0.00 0.00 2.74
2626 3367 0.537188 CGGGCAAGTACTCCATCTGT 59.463 55.000 0.00 0.00 0.00 3.41
2627 3368 0.824109 TCGGGCAAGTACTCCATCTG 59.176 55.000 0.00 0.00 0.00 2.90
2628 3369 1.794714 ATCGGGCAAGTACTCCATCT 58.205 50.000 0.00 0.00 0.00 2.90
2629 3370 2.614057 CAAATCGGGCAAGTACTCCATC 59.386 50.000 0.00 0.00 0.00 3.51
2630 3371 2.643551 CAAATCGGGCAAGTACTCCAT 58.356 47.619 0.00 0.00 0.00 3.41
2631 3372 1.339631 CCAAATCGGGCAAGTACTCCA 60.340 52.381 0.00 0.00 0.00 3.86
2632 3373 1.339727 ACCAAATCGGGCAAGTACTCC 60.340 52.381 0.00 0.00 40.22 3.85
2633 3374 1.737793 CACCAAATCGGGCAAGTACTC 59.262 52.381 0.00 0.00 40.22 2.59
2634 3375 1.349688 TCACCAAATCGGGCAAGTACT 59.650 47.619 0.00 0.00 40.22 2.73
2635 3376 1.737793 CTCACCAAATCGGGCAAGTAC 59.262 52.381 0.00 0.00 40.22 2.73
2636 3377 1.626321 TCTCACCAAATCGGGCAAGTA 59.374 47.619 0.00 0.00 40.22 2.24
2637 3378 0.400213 TCTCACCAAATCGGGCAAGT 59.600 50.000 0.00 0.00 40.22 3.16
2638 3379 1.755179 ATCTCACCAAATCGGGCAAG 58.245 50.000 0.00 0.00 40.22 4.01
2639 3380 2.026729 TGTATCTCACCAAATCGGGCAA 60.027 45.455 0.00 0.00 40.22 4.52
2640 3381 1.557371 TGTATCTCACCAAATCGGGCA 59.443 47.619 0.00 0.00 40.22 5.36
2644 3385 7.283633 CGACATAAATGTATCTCACCAAATCG 58.716 38.462 0.00 0.00 41.95 3.34
2650 3391 4.449068 CCAGCGACATAAATGTATCTCACC 59.551 45.833 0.00 0.00 41.95 4.02
2668 3409 7.916450 GGCTATAGAGTAAATATAGTTCCAGCG 59.084 40.741 3.21 0.00 36.17 5.18
2683 3424 8.666821 TGAAAGTGGAGTATAGGCTATAGAGTA 58.333 37.037 14.42 0.21 0.00 2.59
2684 3425 7.527796 TGAAAGTGGAGTATAGGCTATAGAGT 58.472 38.462 14.42 2.90 0.00 3.24
2685 3426 8.410673 TTGAAAGTGGAGTATAGGCTATAGAG 57.589 38.462 14.42 0.00 0.00 2.43
2687 3428 8.184304 ACTTGAAAGTGGAGTATAGGCTATAG 57.816 38.462 14.42 2.90 37.98 1.31
2688 3429 8.421784 CAACTTGAAAGTGGAGTATAGGCTATA 58.578 37.037 10.18 10.18 39.66 1.31
2689 3430 7.275920 CAACTTGAAAGTGGAGTATAGGCTAT 58.724 38.462 12.41 12.41 39.66 2.97
2690 3431 6.351881 CCAACTTGAAAGTGGAGTATAGGCTA 60.352 42.308 0.00 0.00 39.66 3.93
2691 3432 5.491982 CAACTTGAAAGTGGAGTATAGGCT 58.508 41.667 0.00 0.00 39.66 4.58
2693 3434 5.805728 ACCAACTTGAAAGTGGAGTATAGG 58.194 41.667 14.60 0.00 39.66 2.57
2694 3435 6.710744 ACAACCAACTTGAAAGTGGAGTATAG 59.289 38.462 14.60 0.00 39.66 1.31
2695 3436 6.597562 ACAACCAACTTGAAAGTGGAGTATA 58.402 36.000 14.60 0.00 39.66 1.47
2696 3437 5.445964 ACAACCAACTTGAAAGTGGAGTAT 58.554 37.500 14.60 0.00 39.66 2.12
2698 3439 3.694566 GACAACCAACTTGAAAGTGGAGT 59.305 43.478 14.60 12.44 39.66 3.85
2700 3441 3.694072 CAGACAACCAACTTGAAAGTGGA 59.306 43.478 14.60 0.00 39.66 4.02
2701 3442 3.734902 GCAGACAACCAACTTGAAAGTGG 60.735 47.826 0.00 3.75 39.66 4.00
2702 3443 3.438360 GCAGACAACCAACTTGAAAGTG 58.562 45.455 0.00 0.00 39.66 3.16
2703 3444 2.427095 GGCAGACAACCAACTTGAAAGT 59.573 45.455 0.00 0.00 42.04 2.66
2704 3445 2.541588 CGGCAGACAACCAACTTGAAAG 60.542 50.000 0.00 0.00 33.59 2.62
2705 3446 1.403679 CGGCAGACAACCAACTTGAAA 59.596 47.619 0.00 0.00 33.59 2.69
2706 3447 1.021202 CGGCAGACAACCAACTTGAA 58.979 50.000 0.00 0.00 33.59 2.69
2707 3448 0.817634 CCGGCAGACAACCAACTTGA 60.818 55.000 0.00 0.00 33.59 3.02
2708 3449 1.101049 ACCGGCAGACAACCAACTTG 61.101 55.000 0.00 0.00 35.77 3.16
2709 3450 0.395173 AACCGGCAGACAACCAACTT 60.395 50.000 0.00 0.00 0.00 2.66
2710 3451 1.101049 CAACCGGCAGACAACCAACT 61.101 55.000 0.00 0.00 0.00 3.16
2711 3452 1.358759 CAACCGGCAGACAACCAAC 59.641 57.895 0.00 0.00 0.00 3.77
2712 3453 2.485795 GCAACCGGCAGACAACCAA 61.486 57.895 0.00 0.00 43.97 3.67
2724 3465 1.021202 TCTGACAAACCTTGCAACCG 58.979 50.000 0.00 0.00 0.00 4.44
2728 3469 3.565307 AGGAAATCTGACAAACCTTGCA 58.435 40.909 0.00 0.00 0.00 4.08
2765 3506 6.342338 TCCAGAAACCTAGAGTTACAGAAC 57.658 41.667 0.00 0.00 37.88 3.01
2771 3512 6.213600 AGCATCTTTCCAGAAACCTAGAGTTA 59.786 38.462 0.00 0.00 37.88 2.24
2778 3519 4.289672 TCCTTAGCATCTTTCCAGAAACCT 59.710 41.667 0.00 0.00 30.76 3.50
2779 3520 4.589908 TCCTTAGCATCTTTCCAGAAACC 58.410 43.478 0.00 0.00 30.76 3.27
2780 3521 5.882557 TGATCCTTAGCATCTTTCCAGAAAC 59.117 40.000 0.00 0.00 30.76 2.78
2781 3522 6.065976 TGATCCTTAGCATCTTTCCAGAAA 57.934 37.500 0.00 0.00 30.76 2.52
2782 3523 5.698741 TGATCCTTAGCATCTTTCCAGAA 57.301 39.130 0.00 0.00 30.76 3.02
2783 3524 5.698741 TTGATCCTTAGCATCTTTCCAGA 57.301 39.130 0.00 0.00 0.00 3.86
2784 3525 5.884792 AGTTTGATCCTTAGCATCTTTCCAG 59.115 40.000 0.00 0.00 0.00 3.86
2785 3526 5.649395 CAGTTTGATCCTTAGCATCTTTCCA 59.351 40.000 0.00 0.00 0.00 3.53
2853 3594 1.135721 GGGCATGCATTTCAGAGGAAC 59.864 52.381 21.36 0.00 31.35 3.62
2917 3658 5.360714 TCTTTGTTTGCCATATCTGAATCCC 59.639 40.000 0.00 0.00 0.00 3.85
2947 3688 4.826733 ACATCTCACAAAACCATGCAAGTA 59.173 37.500 0.00 0.00 0.00 2.24
2948 3689 3.638160 ACATCTCACAAAACCATGCAAGT 59.362 39.130 0.00 0.00 0.00 3.16
2949 3690 4.247267 ACATCTCACAAAACCATGCAAG 57.753 40.909 0.00 0.00 0.00 4.01
2951 3692 5.064579 CGTATACATCTCACAAAACCATGCA 59.935 40.000 3.32 0.00 0.00 3.96
2952 3693 5.501715 CGTATACATCTCACAAAACCATGC 58.498 41.667 3.32 0.00 0.00 4.06
2953 3694 5.007626 CCCGTATACATCTCACAAAACCATG 59.992 44.000 3.32 0.00 0.00 3.66
2954 3695 5.123227 CCCGTATACATCTCACAAAACCAT 58.877 41.667 3.32 0.00 0.00 3.55
2955 3696 4.509616 CCCGTATACATCTCACAAAACCA 58.490 43.478 3.32 0.00 0.00 3.67
2956 3697 3.875134 CCCCGTATACATCTCACAAAACC 59.125 47.826 3.32 0.00 0.00 3.27
2957 3698 4.761975 TCCCCGTATACATCTCACAAAAC 58.238 43.478 3.32 0.00 0.00 2.43
2958 3699 5.623956 ATCCCCGTATACATCTCACAAAA 57.376 39.130 3.32 0.00 0.00 2.44
2959 3700 5.279306 GCTATCCCCGTATACATCTCACAAA 60.279 44.000 3.32 0.00 0.00 2.83
2960 3701 4.219944 GCTATCCCCGTATACATCTCACAA 59.780 45.833 3.32 0.00 0.00 3.33
2961 3702 3.762288 GCTATCCCCGTATACATCTCACA 59.238 47.826 3.32 0.00 0.00 3.58
2962 3703 3.762288 TGCTATCCCCGTATACATCTCAC 59.238 47.826 3.32 0.00 0.00 3.51
2963 3704 4.017126 CTGCTATCCCCGTATACATCTCA 58.983 47.826 3.32 0.00 0.00 3.27
2964 3705 3.181485 GCTGCTATCCCCGTATACATCTC 60.181 52.174 3.32 0.00 0.00 2.75
2965 3706 2.761208 GCTGCTATCCCCGTATACATCT 59.239 50.000 3.32 0.00 0.00 2.90
2966 3707 2.496070 TGCTGCTATCCCCGTATACATC 59.504 50.000 3.32 0.00 0.00 3.06
2967 3708 2.233922 GTGCTGCTATCCCCGTATACAT 59.766 50.000 3.32 0.00 0.00 2.29
2968 3709 1.616865 GTGCTGCTATCCCCGTATACA 59.383 52.381 3.32 0.00 0.00 2.29
2975 3716 2.280457 GCTCGTGCTGCTATCCCC 60.280 66.667 1.41 0.00 36.03 4.81
2978 3719 2.659897 CGGGCTCGTGCTGCTATC 60.660 66.667 9.61 0.00 39.59 2.08
3008 3749 4.452733 GCCTCCGAACGGGACTGG 62.453 72.222 13.29 11.04 40.94 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.