Multiple sequence alignment - TraesCS2B01G352800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G352800 chr2B 100.000 3406 0 0 1 3406 503760841 503757436 0.000000e+00 6290.0
1 TraesCS2B01G352800 chr2B 85.526 76 5 3 2472 2542 361287880 361287954 1.310000e-09 75.0
2 TraesCS2B01G352800 chr2D 95.098 2387 97 9 83 2458 426940753 426938376 0.000000e+00 3742.0
3 TraesCS2B01G352800 chr2D 95.322 855 31 5 2452 3306 426933087 426932242 0.000000e+00 1349.0
4 TraesCS2B01G352800 chr2D 98.095 105 1 1 3303 3406 426932162 426932058 7.510000e-42 182.0
5 TraesCS2B01G352800 chr2A 92.848 2293 114 20 1029 3306 562092802 562095059 0.000000e+00 3280.0
6 TraesCS2B01G352800 chr2A 92.041 1759 83 30 965 2688 561852786 561854522 0.000000e+00 2420.0
7 TraesCS2B01G352800 chr2A 90.964 1660 110 29 1050 2688 561843573 561845213 0.000000e+00 2198.0
8 TraesCS2B01G352800 chr2A 83.126 723 78 21 2702 3406 561854510 561855206 1.340000e-173 619.0
9 TraesCS2B01G352800 chr2A 98.095 105 1 1 3303 3406 562095138 562095242 7.510000e-42 182.0
10 TraesCS2B01G352800 chr6D 88.062 578 61 5 379 950 16178260 16178835 0.000000e+00 678.0
11 TraesCS2B01G352800 chr6D 94.771 306 15 1 78 382 16177839 16178144 3.080000e-130 475.0
12 TraesCS2B01G352800 chr6D 94.667 75 4 0 2 76 427222478 427222552 2.150000e-22 117.0
13 TraesCS2B01G352800 chr4A 87.437 597 66 6 379 968 727414720 727415314 0.000000e+00 678.0
14 TraesCS2B01G352800 chr4A 93.137 306 20 1 78 382 24117608 24117913 6.700000e-122 448.0
15 TraesCS2B01G352800 chr3D 90.076 524 48 2 379 899 143236387 143236909 0.000000e+00 676.0
16 TraesCS2B01G352800 chr3D 87.000 600 66 8 379 971 577412548 577411954 0.000000e+00 665.0
17 TraesCS2B01G352800 chr3D 94.684 301 15 1 82 382 549376722 549377021 1.850000e-127 466.0
18 TraesCS2B01G352800 chr3D 94.000 300 18 0 83 382 589431865 589431566 4.010000e-124 455.0
19 TraesCS2B01G352800 chr3D 88.095 84 10 0 2 85 8544687 8544604 2.160000e-17 100.0
20 TraesCS2B01G352800 chr1D 86.767 597 69 5 379 969 58512343 58512935 0.000000e+00 656.0
21 TraesCS2B01G352800 chr7D 86.667 600 65 12 379 968 532629250 532629844 0.000000e+00 651.0
22 TraesCS2B01G352800 chr7D 89.610 77 8 0 3 79 245317217 245317141 7.780000e-17 99.0
23 TraesCS2B01G352800 chr6B 86.532 594 75 3 379 968 659591903 659592495 0.000000e+00 649.0
24 TraesCS2B01G352800 chr6B 95.017 301 15 0 82 382 27918391 27918691 1.110000e-129 473.0
25 TraesCS2B01G352800 chr5D 86.074 596 72 9 379 968 305778815 305779405 6.200000e-177 630.0
26 TraesCS2B01G352800 chr5D 95.333 300 14 0 83 382 539037145 539036846 8.550000e-131 477.0
27 TraesCS2B01G352800 chr5D 87.013 77 6 3 2458 2532 312135418 312135492 2.180000e-12 84.2
28 TraesCS2B01G352800 chr5A 95.000 300 15 0 83 382 73805027 73804728 3.980000e-129 472.0
29 TraesCS2B01G352800 chr5A 94.020 301 18 0 82 382 480478117 480478417 1.110000e-124 457.0
30 TraesCS2B01G352800 chr7B 97.403 77 2 0 1 77 588067865 588067941 7.670000e-27 132.0
31 TraesCS2B01G352800 chrUn 92.500 80 6 0 2 81 385849936 385850015 7.720000e-22 115.0
32 TraesCS2B01G352800 chr3B 92.105 76 6 0 2 77 660991536 660991461 1.290000e-19 108.0
33 TraesCS2B01G352800 chr3B 97.959 49 1 0 29 77 563400434 563400386 6.060000e-13 86.1
34 TraesCS2B01G352800 chr7A 92.000 75 6 0 2 76 495557478 495557552 4.650000e-19 106.0
35 TraesCS2B01G352800 chr1B 96.000 50 2 0 29 78 486853162 486853113 7.830000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G352800 chr2B 503757436 503760841 3405 True 6290.0 6290 100.0000 1 3406 1 chr2B.!!$R1 3405
1 TraesCS2B01G352800 chr2D 426938376 426940753 2377 True 3742.0 3742 95.0980 83 2458 1 chr2D.!!$R1 2375
2 TraesCS2B01G352800 chr2D 426932058 426933087 1029 True 765.5 1349 96.7085 2452 3406 2 chr2D.!!$R2 954
3 TraesCS2B01G352800 chr2A 561843573 561845213 1640 False 2198.0 2198 90.9640 1050 2688 1 chr2A.!!$F1 1638
4 TraesCS2B01G352800 chr2A 562092802 562095242 2440 False 1731.0 3280 95.4715 1029 3406 2 chr2A.!!$F3 2377
5 TraesCS2B01G352800 chr2A 561852786 561855206 2420 False 1519.5 2420 87.5835 965 3406 2 chr2A.!!$F2 2441
6 TraesCS2B01G352800 chr6D 16177839 16178835 996 False 576.5 678 91.4165 78 950 2 chr6D.!!$F2 872
7 TraesCS2B01G352800 chr4A 727414720 727415314 594 False 678.0 678 87.4370 379 968 1 chr4A.!!$F2 589
8 TraesCS2B01G352800 chr3D 143236387 143236909 522 False 676.0 676 90.0760 379 899 1 chr3D.!!$F1 520
9 TraesCS2B01G352800 chr3D 577411954 577412548 594 True 665.0 665 87.0000 379 971 1 chr3D.!!$R2 592
10 TraesCS2B01G352800 chr1D 58512343 58512935 592 False 656.0 656 86.7670 379 969 1 chr1D.!!$F1 590
11 TraesCS2B01G352800 chr7D 532629250 532629844 594 False 651.0 651 86.6670 379 968 1 chr7D.!!$F1 589
12 TraesCS2B01G352800 chr6B 659591903 659592495 592 False 649.0 649 86.5320 379 968 1 chr6B.!!$F2 589
13 TraesCS2B01G352800 chr5D 305778815 305779405 590 False 630.0 630 86.0740 379 968 1 chr5D.!!$F1 589

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
301 302 0.970937 GGTGATGTCCTCCTCCGACA 60.971 60.0 0.0 0.0 44.0 4.35 F
778 911 1.085091 GGTAGAGTGAGCGACGAGAA 58.915 55.0 0.0 0.0 0.0 2.87 F
2028 2189 0.973632 AGACGTGCCTATGGTGTTCA 59.026 50.0 0.0 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1876 2037 0.038166 ATTCACCGTGTCCCAGCATT 59.962 50.000 0.0 0.0 0.00 3.56 R
2155 2316 1.462283 CTCCACTCATGTGCTGTTTCG 59.538 52.381 0.0 0.0 42.54 3.46 R
2888 3069 0.731417 CTTCCGCTGCTTGATCTTGG 59.269 55.000 0.0 0.0 0.00 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 6.961576 CCAAATATTGGCTTGCCAAATATTG 58.038 36.000 27.66 26.25 45.17 1.90
41 42 6.766944 CCAAATATTGGCTTGCCAAATATTGA 59.233 34.615 29.47 13.57 45.17 2.57
42 43 7.446013 CCAAATATTGGCTTGCCAAATATTGAT 59.554 33.333 29.47 18.32 45.17 2.57
43 44 9.491675 CAAATATTGGCTTGCCAAATATTGATA 57.508 29.630 27.66 15.42 33.20 2.15
46 47 7.972832 ATTGGCTTGCCAAATATTGATAATG 57.027 32.000 27.66 0.00 33.20 1.90
47 48 5.299148 TGGCTTGCCAAATATTGATAATGC 58.701 37.500 12.40 0.00 0.00 3.56
48 49 4.692155 GGCTTGCCAAATATTGATAATGCC 59.308 41.667 6.79 0.00 0.00 4.40
49 50 5.299148 GCTTGCCAAATATTGATAATGCCA 58.701 37.500 0.00 0.00 0.00 4.92
50 51 5.759273 GCTTGCCAAATATTGATAATGCCAA 59.241 36.000 0.00 0.00 0.00 4.52
51 52 6.260493 GCTTGCCAAATATTGATAATGCCAAA 59.740 34.615 0.00 0.00 0.00 3.28
52 53 7.040961 GCTTGCCAAATATTGATAATGCCAAAT 60.041 33.333 0.00 0.00 0.00 2.32
53 54 7.731882 TGCCAAATATTGATAATGCCAAATG 57.268 32.000 0.00 0.00 0.00 2.32
54 55 7.281098 TGCCAAATATTGATAATGCCAAATGT 58.719 30.769 0.00 0.00 0.00 2.71
55 56 7.774157 TGCCAAATATTGATAATGCCAAATGTT 59.226 29.630 0.00 0.00 0.00 2.71
56 57 8.071368 GCCAAATATTGATAATGCCAAATGTTG 58.929 33.333 0.00 0.00 0.00 3.33
72 73 8.721019 CCAAATGTTGGTAGCAAATCAATTAT 57.279 30.769 9.30 0.00 45.93 1.28
73 74 8.605746 CCAAATGTTGGTAGCAAATCAATTATG 58.394 33.333 9.30 8.15 45.93 1.90
74 75 7.775397 AATGTTGGTAGCAAATCAATTATGC 57.225 32.000 9.30 0.00 40.34 3.14
76 77 6.563422 TGTTGGTAGCAAATCAATTATGCTC 58.437 36.000 9.30 0.00 46.98 4.26
77 78 6.377996 TGTTGGTAGCAAATCAATTATGCTCT 59.622 34.615 9.30 0.00 46.98 4.09
78 79 7.093814 TGTTGGTAGCAAATCAATTATGCTCTT 60.094 33.333 9.30 0.00 46.98 2.85
79 80 7.408756 TGGTAGCAAATCAATTATGCTCTTT 57.591 32.000 2.36 0.00 46.98 2.52
80 81 8.518430 TGGTAGCAAATCAATTATGCTCTTTA 57.482 30.769 2.36 0.00 46.98 1.85
81 82 9.135189 TGGTAGCAAATCAATTATGCTCTTTAT 57.865 29.630 2.36 0.00 46.98 1.40
112 113 4.495422 CTTGACGCCTACTATGTGAACTT 58.505 43.478 0.00 0.00 0.00 2.66
139 140 4.509616 TCGATACACATTTGGTTCCGATT 58.490 39.130 0.00 0.00 0.00 3.34
147 148 5.401079 CACATTTGGTTCCGATTGTACAAAC 59.599 40.000 13.23 9.21 31.61 2.93
148 149 4.571372 TTTGGTTCCGATTGTACAAACC 57.429 40.909 13.23 15.09 39.84 3.27
301 302 0.970937 GGTGATGTCCTCCTCCGACA 60.971 60.000 0.00 0.00 44.00 4.35
466 586 1.428219 GTTCTCGCGACGATCCTCA 59.572 57.895 3.71 0.00 34.61 3.86
594 718 3.649986 GTATGCACGGGCGCCATC 61.650 66.667 30.85 11.20 45.35 3.51
595 719 4.927782 TATGCACGGGCGCCATCC 62.928 66.667 30.85 13.64 45.35 3.51
614 738 2.281276 GGGCGGTGTCGAAGGTTT 60.281 61.111 0.00 0.00 39.00 3.27
616 740 1.595929 GGCGGTGTCGAAGGTTTCA 60.596 57.895 0.00 0.00 39.00 2.69
766 899 2.371306 GAGGAGAGAAAGCGGTAGAGT 58.629 52.381 0.00 0.00 0.00 3.24
778 911 1.085091 GGTAGAGTGAGCGACGAGAA 58.915 55.000 0.00 0.00 0.00 2.87
809 944 2.357637 GGGCGCTGCAATTTTATAGACA 59.642 45.455 7.64 0.00 0.00 3.41
818 953 3.530265 ATTTTATAGACACGCCGGACA 57.470 42.857 5.05 0.00 0.00 4.02
883 1021 1.227002 GCTAGTTTCTCGCCTCCGG 60.227 63.158 0.00 0.00 34.56 5.14
891 1029 3.589654 CTCGCCTCCGGTGAAGCAA 62.590 63.158 4.76 0.00 41.98 3.91
902 1040 2.095969 CGGTGAAGCAAGCGAAAATGTA 60.096 45.455 0.03 0.00 43.52 2.29
916 1054 1.497991 AATGTATCGCGCGTGCTAAT 58.502 45.000 30.98 17.83 39.65 1.73
917 1055 1.497991 ATGTATCGCGCGTGCTAATT 58.502 45.000 30.98 7.14 39.65 1.40
922 1060 2.178025 GCGCGTGCTAATTTGCCA 59.822 55.556 15.02 0.00 38.39 4.92
1046 1201 1.403914 CCAAAGCGCAACATAATGGCA 60.404 47.619 11.47 0.00 0.00 4.92
1844 2005 1.203758 AGCATGTCCGACAACGACATA 59.796 47.619 5.07 0.00 42.66 2.29
2028 2189 0.973632 AGACGTGCCTATGGTGTTCA 59.026 50.000 0.00 0.00 0.00 3.18
2052 2213 1.296715 GTCACCCGAACCTCTGCAT 59.703 57.895 0.00 0.00 0.00 3.96
2088 2249 1.945394 CTGCTGACAGTGTTCAAAGCT 59.055 47.619 16.92 0.00 39.22 3.74
2155 2316 3.236816 CAAGCATCGACAACAATGGAAC 58.763 45.455 0.00 0.00 0.00 3.62
2340 2505 6.428465 TCTTTATGTTCCTAAATCGTTGTGCA 59.572 34.615 0.00 0.00 0.00 4.57
2430 2606 8.298030 AGTGCTAGTTTGTCATTTATTTTTGC 57.702 30.769 0.00 0.00 0.00 3.68
2522 2700 5.966742 AATTAACAGGGCAACTCTTCTTC 57.033 39.130 0.00 0.00 0.00 2.87
2523 2701 4.706842 TTAACAGGGCAACTCTTCTTCT 57.293 40.909 0.00 0.00 0.00 2.85
2524 2702 3.584733 AACAGGGCAACTCTTCTTCTT 57.415 42.857 0.00 0.00 0.00 2.52
2545 2725 7.404671 TCTTAATAAATGGGAGGCAAAACTC 57.595 36.000 0.00 0.00 36.76 3.01
2568 2748 3.891366 CACCTCTGTTGTGGGAGAAAAAT 59.109 43.478 0.00 0.00 0.00 1.82
2578 2759 9.621629 TGTTGTGGGAGAAAAATATATTCGTAT 57.378 29.630 0.00 0.00 32.04 3.06
2689 2870 9.173939 CACAAAACAACTAAACAAATGCAAAAA 57.826 25.926 0.00 0.00 0.00 1.94
2841 3022 7.597386 ACAATCTAAGGAAATGAAGCTCAAAC 58.403 34.615 0.00 0.00 0.00 2.93
2888 3069 5.804979 TCTGTTTAGTTGCTTCAAAGTTTGC 59.195 36.000 10.90 0.00 0.00 3.68
2914 3102 3.330992 AAGCAGCGGAAGGGCCTAC 62.331 63.158 6.41 1.49 0.00 3.18
2940 3128 1.522355 CTAGGCGTGCCATGTGAGG 60.522 63.158 14.29 0.00 38.92 3.86
2992 3180 4.288105 ACAGATGGATGGTTCAGAACTTCT 59.712 41.667 13.13 4.08 0.00 2.85
3105 3306 4.549458 ACAAAATCGAGCAACTTTGATGG 58.451 39.130 11.36 0.00 33.84 3.51
3167 3368 4.082463 TGAATTGGCAGGTATTTTCGTTCC 60.082 41.667 0.00 0.00 0.00 3.62
3178 3379 1.265236 TTTCGTTCCCCGCTACCTTA 58.735 50.000 0.00 0.00 36.19 2.69
3199 3400 8.107095 ACCTTAAAAGTCCAGCAACTTCATATA 58.893 33.333 0.41 0.00 38.52 0.86
3252 3453 6.448207 AATGCTCCAGAAGATTTAAAGAGC 57.552 37.500 13.54 13.54 44.25 4.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.351461 CCAATATTTGGCAAAATCAAAAGTTGT 58.649 29.630 17.70 0.00 45.17 3.32
1 2 8.730970 CCAATATTTGGCAAAATCAAAAGTTG 57.269 30.769 17.70 11.73 45.17 3.16
24 25 5.299148 GCATTATCAATATTTGGCAAGCCA 58.701 37.500 10.24 10.24 45.63 4.75
25 26 4.692155 GGCATTATCAATATTTGGCAAGCC 59.308 41.667 3.61 3.61 0.00 4.35
26 27 5.299148 TGGCATTATCAATATTTGGCAAGC 58.701 37.500 10.03 0.00 0.00 4.01
27 28 7.789273 TTTGGCATTATCAATATTTGGCAAG 57.211 32.000 19.30 0.00 40.41 4.01
28 29 7.774157 ACATTTGGCATTATCAATATTTGGCAA 59.226 29.630 17.38 17.38 38.29 4.52
29 30 7.281098 ACATTTGGCATTATCAATATTTGGCA 58.719 30.769 8.74 8.74 0.00 4.92
30 31 7.733402 ACATTTGGCATTATCAATATTTGGC 57.267 32.000 4.20 4.20 0.00 4.52
31 32 8.561212 CCAACATTTGGCATTATCAATATTTGG 58.439 33.333 0.00 0.00 45.17 3.28
48 49 8.117988 GCATAATTGATTTGCTACCAACATTTG 58.882 33.333 0.00 0.00 33.61 2.32
49 50 8.042515 AGCATAATTGATTTGCTACCAACATTT 58.957 29.630 9.88 0.00 44.51 2.32
50 51 7.558604 AGCATAATTGATTTGCTACCAACATT 58.441 30.769 9.88 0.00 44.51 2.71
51 52 7.069085 AGAGCATAATTGATTTGCTACCAACAT 59.931 33.333 10.94 0.00 46.21 2.71
52 53 6.377996 AGAGCATAATTGATTTGCTACCAACA 59.622 34.615 10.94 0.00 46.21 3.33
53 54 6.799512 AGAGCATAATTGATTTGCTACCAAC 58.200 36.000 10.94 3.11 46.21 3.77
54 55 7.408756 AAGAGCATAATTGATTTGCTACCAA 57.591 32.000 10.94 0.00 46.21 3.67
55 56 7.408756 AAAGAGCATAATTGATTTGCTACCA 57.591 32.000 10.94 0.00 46.21 3.25
56 57 9.971922 AATAAAGAGCATAATTGATTTGCTACC 57.028 29.630 10.94 4.04 46.21 3.18
88 89 2.730382 TCACATAGTAGGCGTCAAGGA 58.270 47.619 0.00 0.00 0.00 3.36
112 113 4.569162 GGAACCAAATGTGTATCGAATCGA 59.431 41.667 8.12 8.12 41.13 3.59
139 140 5.242171 TGACGAACTATCTCAGGTTTGTACA 59.758 40.000 0.00 0.00 39.34 2.90
147 148 4.541779 GCTATGTGACGAACTATCTCAGG 58.458 47.826 0.00 0.00 0.00 3.86
148 149 4.277174 AGGCTATGTGACGAACTATCTCAG 59.723 45.833 0.00 0.00 0.00 3.35
275 276 1.596934 GAGGACATCACCGAGGCAA 59.403 57.895 0.00 0.00 34.73 4.52
301 302 0.101399 CTTGACGCCTACGCTCAGAT 59.899 55.000 0.00 0.00 45.53 2.90
482 602 1.613630 ATGAGTTGGCGTCTCCCCT 60.614 57.895 6.35 0.00 0.00 4.79
489 609 2.672996 GGGCACATGAGTTGGCGT 60.673 61.111 0.00 0.00 0.00 5.68
592 716 3.000819 TTCGACACCGCCCAGGAT 61.001 61.111 0.00 0.00 45.00 3.24
593 717 3.691342 CTTCGACACCGCCCAGGA 61.691 66.667 0.00 0.00 45.00 3.86
595 719 3.530910 AACCTTCGACACCGCCCAG 62.531 63.158 0.00 0.00 35.37 4.45
743 876 1.989966 TACCGCTTTCTCTCCTCGCG 61.990 60.000 0.00 0.00 43.08 5.87
766 899 2.126463 CCGCTTTCTCGTCGCTCA 60.126 61.111 0.00 0.00 0.00 4.26
818 953 0.386226 CGTTAAATTTGGCGCACCGT 60.386 50.000 10.83 0.00 39.70 4.83
857 992 2.049433 AGAAACTAGCACGCGCGT 60.049 55.556 32.73 32.73 45.49 6.01
883 1021 3.780801 CGATACATTTTCGCTTGCTTCAC 59.219 43.478 0.00 0.00 0.00 3.18
902 1040 1.297598 GCAAATTAGCACGCGCGAT 60.298 52.632 39.36 23.33 45.49 4.58
953 1094 1.174783 TAGTGAGAGCGTCTCCAACC 58.825 55.000 11.01 0.47 42.73 3.77
962 1103 4.093556 GGTGGAGAATTTTTAGTGAGAGCG 59.906 45.833 0.00 0.00 0.00 5.03
1856 2017 3.849951 CTGCGCCCAGGGTCGTAT 61.850 66.667 19.61 0.00 35.38 3.06
1876 2037 0.038166 ATTCACCGTGTCCCAGCATT 59.962 50.000 0.00 0.00 0.00 3.56
2052 2213 2.057922 AGCAGAGGGAAGAACAAAGGA 58.942 47.619 0.00 0.00 0.00 3.36
2088 2249 1.689233 AGCCTGTTCCGCATAGGGA 60.689 57.895 0.00 0.00 41.52 4.20
2155 2316 1.462283 CTCCACTCATGTGCTGTTTCG 59.538 52.381 0.00 0.00 42.54 3.46
2256 2421 2.772287 ACAGAACTCAGCTAAGGCAAC 58.228 47.619 0.00 0.00 41.70 4.17
2363 2528 6.289745 TGAACACCGAACAAACTTATACAC 57.710 37.500 0.00 0.00 0.00 2.90
2425 2601 4.063689 CACCAAAACAGCCATATGCAAAA 58.936 39.130 0.00 0.00 44.83 2.44
2430 2606 4.517952 TGAACACCAAAACAGCCATATG 57.482 40.909 0.00 0.00 0.00 1.78
2522 2700 6.573434 GGAGTTTTGCCTCCCATTTATTAAG 58.427 40.000 0.00 0.00 44.49 1.85
2523 2701 6.538945 GGAGTTTTGCCTCCCATTTATTAA 57.461 37.500 0.00 0.00 44.49 1.40
2568 2748 3.576550 TGCCAGACAGCCATACGAATATA 59.423 43.478 0.00 0.00 0.00 0.86
2578 2759 1.604308 CCACAATGCCAGACAGCCA 60.604 57.895 0.00 0.00 0.00 4.75
2694 2875 5.058490 CCAATTTGCAATTGTTTCCTCACT 58.942 37.500 7.40 0.00 0.00 3.41
2695 2876 4.319694 GCCAATTTGCAATTGTTTCCTCAC 60.320 41.667 7.40 0.00 0.00 3.51
2696 2877 3.814283 GCCAATTTGCAATTGTTTCCTCA 59.186 39.130 7.40 0.00 0.00 3.86
2707 2888 4.928615 GCATAGTTTAGTGCCAATTTGCAA 59.071 37.500 5.67 0.00 44.11 4.08
2841 3022 1.447317 AAGTGACTGCGCACCCAAAG 61.447 55.000 5.66 0.00 39.59 2.77
2888 3069 0.731417 CTTCCGCTGCTTGATCTTGG 59.269 55.000 0.00 0.00 0.00 3.61
3105 3306 3.916761 TCAATTCCTTTGATGCTGCAAC 58.083 40.909 6.36 4.29 39.44 4.17
3167 3368 2.629051 CTGGACTTTTAAGGTAGCGGG 58.371 52.381 0.00 0.00 0.00 6.13
3178 3379 9.113838 CACTATATATGAAGTTGCTGGACTTTT 57.886 33.333 0.00 0.00 39.84 2.27
3235 3436 8.960591 TGGAATAAAGCTCTTTAAATCTTCTGG 58.039 33.333 6.22 0.00 38.38 3.86
3282 3483 7.750229 ATACTGAAGAAGAGAGCTCTAGATG 57.250 40.000 18.25 4.55 39.39 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.