AutoCloner

Multiple sequence alignment - TraesCS2B01G352100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2B01G352100	chr2B	100.000	2990	0	0	1	2990	502006819	502009808	0.000000e+00	5522.0
1	TraesCS2B01G352100	chr2B	94.091	880	33	9	2098	2974	677946245	677945382	0.000000e+00	1319.0
2	TraesCS2B01G352100	chr2B	93.743	879	40	5	2098	2974	281485993	281485128	0.000000e+00	1304.0
3	TraesCS2B01G352100	chr2B	93.567	886	36	9	2095	2974	310457781	310458651	0.000000e+00	1301.0
4	TraesCS2B01G352100	chr2B	90.462	325	18	3	1776	2092	782284033	782283714	1.660000e-112	416.0
5	TraesCS2B01G352100	chr4A	95.408	2134	90	8	1	2132	422762916	422760789	0.000000e+00	3391.0
6	TraesCS2B01G352100	chr4A	89.701	602	51	7	81	677	306064649	306064054	0.000000e+00	758.0
7	TraesCS2B01G352100	chr4A	85.586	333	47	1	625	957	741807528	741807859	6.130000e-92	348.0
8	TraesCS2B01G352100	chr2A	94.023	1305	73	4	1	1304	38124533	38123233	0.000000e+00	1973.0
9	TraesCS2B01G352100	chr2A	95.550	809	33	3	2183	2990	38122983	38122177	0.000000e+00	1291.0
10	TraesCS2B01G352100	chr2A	89.286	700	57	11	3	689	545062483	545063177	0.000000e+00	861.0
11	TraesCS2B01G352100	chr2A	97.189	249	7	0	1884	2132	38123230	38122982	3.560000e-114	422.0
12	TraesCS2B01G352100	chr7D	95.996	899	27	6	2098	2990	262858960	262858065	0.000000e+00	1452.0
13	TraesCS2B01G352100	chr7D	92.923	325	11	2	1776	2092	262859587	262859267	2.100000e-126	462.0
14	TraesCS2B01G352100	chr7D	94.059	101	6	0	1677	1777	262859867	262859767	1.440000e-33	154.0
15	TraesCS2B01G352100	chr7D	78.067	269	35	14	1086	1338	631818635	631818895	6.680000e-32	148.0
16	TraesCS2B01G352100	chr2D	94.972	895	36	5	2098	2990	165689954	165689067	0.000000e+00	1395.0
17	TraesCS2B01G352100	chr2D	91.692	325	15	2	1776	2092	165690581	165690261	9.840000e-120	440.0
18	TraesCS2B01G352100	chr3A	94.216	899	40	9	2098	2990	549234978	549234086	0.000000e+00	1362.0
19	TraesCS2B01G352100	chr3A	89.949	587	51	3	229	811	462633592	462634174	0.000000e+00	750.0
20	TraesCS2B01G352100	chr3A	92.000	325	13	3	1776	2092	549256788	549256469	7.610000e-121	444.0
21	TraesCS2B01G352100	chr3A	96.040	101	4	0	1677	1777	549257068	549256968	6.630000e-37	165.0
22	TraesCS2B01G352100	chr7B	94.312	879	35	6	2098	2974	271755517	271754652	0.000000e+00	1332.0
23	TraesCS2B01G352100	chr7B	93.537	882	37	10	2095	2974	292239298	292240161	0.000000e+00	1295.0
24	TraesCS2B01G352100	chr7B	90.516	949	87	3	3	950	725263589	725264535	0.000000e+00	1251.0
25	TraesCS2B01G352100	chr7B	98.477	197	3	0	1936	2132	684695387	684695191	6.130000e-92	348.0
26	TraesCS2B01G352100	chr7B	90.260	154	5	2	1209	1362	743383479	743383622	3.040000e-45	193.0
27	TraesCS2B01G352100	chr7B	84.615	208	16	11	1483	1679	743383663	743383865	3.040000e-45	193.0
28	TraesCS2B01G352100	chr7B	100.000	34	0	0	1414	1447	743383631	743383664	2.490000e-06	63.9
29	TraesCS2B01G352100	chr7B	90.476	42	2	2	1168	1209	743383422	743383461	1.000000e-03	54.7
30	TraesCS2B01G352100	chr5B	94.104	882	36	6	2095	2974	18176415	18177282	0.000000e+00	1327.0
31	TraesCS2B01G352100	chr5B	91.077	325	17	2	1776	2092	15219807	15219487	2.130000e-116	429.0
32	TraesCS2B01G352100	chr3B	93.764	882	35	8	2095	2974	691904590	691905453	0.000000e+00	1306.0
33	TraesCS2B01G352100	chr3B	93.184	895	43	8	2098	2990	761354928	761354050	0.000000e+00	1299.0
34	TraesCS2B01G352100	chr3B	93.537	882	37	10	2095	2974	697385436	697386299	0.000000e+00	1295.0
35	TraesCS2B01G352100	chr3B	92.954	809	43	8	1	809	52519925	52519131	0.000000e+00	1166.0
36	TraesCS2B01G352100	chr3B	93.823	599	34	2	1	598	510237198	510237794	0.000000e+00	898.0
37	TraesCS2B01G352100	chr3B	91.385	325	16	2	1776	2092	761355555	761355235	4.580000e-118	435.0
38	TraesCS2B01G352100	chr6B	93.537	882	38	7	2095	2974	644331321	644332185	0.000000e+00	1295.0
39	TraesCS2B01G352100	chr6B	93.197	882	41	7	2095	2974	644284975	644285839	0.000000e+00	1279.0
40	TraesCS2B01G352100	chr6B	95.421	546	24	1	1	546	432004407	432004951	0.000000e+00	869.0
41	TraesCS2B01G352100	chr5D	88.927	578	38	6	373	950	61857467	61858018	0.000000e+00	689.0
42	TraesCS2B01G352100	chr3D	92.903	465	27	3	350	810	413349955	413349493	0.000000e+00	671.0
43	TraesCS2B01G352100	chr3D	88.329	377	39	5	506	880	568344777	568344404	5.880000e-122	448.0
44	TraesCS2B01G352100	chr6A	91.692	325	15	3	1776	2092	320935831	320935511	9.840000e-120	440.0
45	TraesCS2B01G352100	chr1B	91.857	307	13	2	1794	2092	529988548	529988850	4.610000e-113	418.0
46	TraesCS2B01G352100	chr1B	87.234	329	39	1	625	950	687721326	687720998	3.640000e-99	372.0
47	TraesCS2B01G352100	chrUn	98.477	197	3	0	1936	2132	197853395	197853199	6.130000e-92	348.0
48	TraesCS2B01G352100	chrUn	98.477	197	3	0	1936	2132	224010384	224010188	6.130000e-92	348.0
49	TraesCS2B01G352100	chrUn	98.477	197	3	0	1936	2132	334121225	334121029	6.130000e-92	348.0
50	TraesCS2B01G352100	chrUn	98.477	197	3	0	1936	2132	401281688	401281492	6.130000e-92	348.0
51	TraesCS2B01G352100	chrUn	98.477	197	3	0	1936	2132	401293951	401294147	6.130000e-92	348.0
52	TraesCS2B01G352100	chr1A	97.087	206	6	0	1927	2132	475438111	475438316	6.130000e-92	348.0
53	TraesCS2B01G352100	chr7A	90.476	126	9	3	1200	1322	736552021	736551896	2.380000e-36	163.0
54	TraesCS2B01G352100	chr4D	97.778	45	1	0	1733	1777	509239188	509239144	8.890000e-11	78.7
55	TraesCS2B01G352100	chr5A	97.561	41	1	0	1733	1773	698012280	698012240	1.490000e-08	71.3

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2B01G352100	chr2B	502006819	502009808	2989	False	5522.000000	5522	100.000000	1	2990	1	chr2B.!!$F2	2989
1	TraesCS2B01G352100	chr2B	677945382	677946245	863	True	1319.000000	1319	94.091000	2098	2974	1	chr2B.!!$R2	876
2	TraesCS2B01G352100	chr2B	281485128	281485993	865	True	1304.000000	1304	93.743000	2098	2974	1	chr2B.!!$R1	876
3	TraesCS2B01G352100	chr2B	310457781	310458651	870	False	1301.000000	1301	93.567000	2095	2974	1	chr2B.!!$F1	879
4	TraesCS2B01G352100	chr4A	422760789	422762916	2127	True	3391.000000	3391	95.408000	1	2132	1	chr4A.!!$R2	2131
5	TraesCS2B01G352100	chr4A	306064054	306064649	595	True	758.000000	758	89.701000	81	677	1	chr4A.!!$R1	596
6	TraesCS2B01G352100	chr2A	38122177	38124533	2356	True	1228.666667	1973	95.587333	1	2990	3	chr2A.!!$R1	2989
7	TraesCS2B01G352100	chr2A	545062483	545063177	694	False	861.000000	861	89.286000	3	689	1	chr2A.!!$F1	686
8	TraesCS2B01G352100	chr7D	262858065	262859867	1802	True	689.333333	1452	94.326000	1677	2990	3	chr7D.!!$R1	1313
9	TraesCS2B01G352100	chr2D	165689067	165690581	1514	True	917.500000	1395	93.332000	1776	2990	2	chr2D.!!$R1	1214
10	TraesCS2B01G352100	chr3A	549234086	549234978	892	True	1362.000000	1362	94.216000	2098	2990	1	chr3A.!!$R1	892
11	TraesCS2B01G352100	chr3A	462633592	462634174	582	False	750.000000	750	89.949000	229	811	1	chr3A.!!$F1	582
12	TraesCS2B01G352100	chr3A	549256469	549257068	599	True	304.500000	444	94.020000	1677	2092	2	chr3A.!!$R2	415
13	TraesCS2B01G352100	chr7B	271754652	271755517	865	True	1332.000000	1332	94.312000	2098	2974	1	chr7B.!!$R1	876
14	TraesCS2B01G352100	chr7B	292239298	292240161	863	False	1295.000000	1295	93.537000	2095	2974	1	chr7B.!!$F1	879
15	TraesCS2B01G352100	chr7B	725263589	725264535	946	False	1251.000000	1251	90.516000	3	950	1	chr7B.!!$F2	947
16	TraesCS2B01G352100	chr5B	18176415	18177282	867	False	1327.000000	1327	94.104000	2095	2974	1	chr5B.!!$F1	879
17	TraesCS2B01G352100	chr3B	691904590	691905453	863	False	1306.000000	1306	93.764000	2095	2974	1	chr3B.!!$F2	879
18	TraesCS2B01G352100	chr3B	697385436	697386299	863	False	1295.000000	1295	93.537000	2095	2974	1	chr3B.!!$F3	879
19	TraesCS2B01G352100	chr3B	52519131	52519925	794	True	1166.000000	1166	92.954000	1	809	1	chr3B.!!$R1	808
20	TraesCS2B01G352100	chr3B	510237198	510237794	596	False	898.000000	898	93.823000	1	598	1	chr3B.!!$F1	597
21	TraesCS2B01G352100	chr3B	761354050	761355555	1505	True	867.000000	1299	92.284500	1776	2990	2	chr3B.!!$R2	1214
22	TraesCS2B01G352100	chr6B	644331321	644332185	864	False	1295.000000	1295	93.537000	2095	2974	1	chr6B.!!$F3	879
23	TraesCS2B01G352100	chr6B	644284975	644285839	864	False	1279.000000	1279	93.197000	2095	2974	1	chr6B.!!$F2	879
24	TraesCS2B01G352100	chr6B	432004407	432004951	544	False	869.000000	869	95.421000	1	546	1	chr6B.!!$F1	545
25	TraesCS2B01G352100	chr5D	61857467	61858018	551	False	689.000000	689	88.927000	373	950	1	chr5D.!!$F1	577

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
638	664	0.804544	CGTATACGTGGTGCTGTGGG	60.805	60.0	17.16	0.0	34.11	4.61	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2562	3095	0.0293	CGAGCACCACCACAACAAAG	59.971	55.0	0.0	0.0	0.0	2.77	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
46	48	2.260434	GTTCGTAGCTGCGGGTGA	59.740	61.111	24.11	1.32	0.00	4.02
73	75	7.421530	TCTTACAAAACTCATAGTGTTCTGC	57.578	36.000	0.00	0.00	0.00	4.26
93	103	7.294676	TCTGCGATGAAATATATACATGTGC	57.705	36.000	9.11	11.74	0.00	4.57
201	213	5.104259	ACAAGTTGGTTTAAATGGCCAAA	57.896	34.783	10.96	0.00	42.98	3.28
251	263	8.292448	GCATACAAGTTGGTTATCATCCATAAG	58.708	37.037	7.96	0.00	34.75	1.73
252	264	6.699575	ACAAGTTGGTTATCATCCATAAGC	57.300	37.500	7.96	0.00	43.26	3.09
262	274	7.766278	GGTTATCATCCATAAGCTGTGGTATAG	59.234	40.741	15.79	6.92	40.82	1.31
516	539	2.044555	CCGCACCACTCGTCCTCTA	61.045	63.158	0.00	0.00	0.00	2.43
518	541	1.139947	GCACCACTCGTCCTCTAGC	59.860	63.158	0.00	0.00	0.00	3.42
623	649	1.078214	TCGACGACCCTCACCGTAT	60.078	57.895	0.00	0.00	39.30	3.06
638	664	0.804544	CGTATACGTGGTGCTGTGGG	60.805	60.000	17.16	0.00	34.11	4.61
708	734	3.814676	GCCTCCTAGATCCTATTCCACGA	60.815	52.174	0.00	0.00	0.00	4.35
877	906	1.528542	CCTCATCCGCTCCGTCCTA	60.529	63.158	0.00	0.00	0.00	2.94
887	916	3.227276	CCGTCCTAGCCGGCATCT	61.227	66.667	31.54	11.17	38.85	2.90
1032	1061	1.836802	GAGCTCCTCCTCCACAAGATT	59.163	52.381	0.87	0.00	0.00	2.40
1071	1100	7.378966	TCCTACTTGAAGTAGTGAATGTTCAG	58.621	38.462	25.70	10.43	45.12	3.02
1072	1102	7.232737	TCCTACTTGAAGTAGTGAATGTTCAGA	59.767	37.037	25.70	12.22	45.12	3.27
1241	1272	2.677003	CGACCATGCCGACAACACC	61.677	63.158	0.16	0.00	0.00	4.16
1325	1356	0.752054	AGTATGCTCTGCTCTGCTCC	59.248	55.000	0.00	0.00	0.00	4.70
1326	1357	0.249826	GTATGCTCTGCTCTGCTCCC	60.250	60.000	0.00	0.00	0.00	4.30
1338	1369	0.034670	CTGCTCCCCTTTTCTCCCTG	60.035	60.000	0.00	0.00	0.00	4.45
1367	1398	0.458889	CTGAAATGCAATGCGGGTGG	60.459	55.000	0.00	0.00	0.00	4.61
1390	1421	6.663734	GGCCCTGCCTTTTATCTGTATATAT	58.336	40.000	0.00	0.00	46.69	0.86
1560	1591	8.812513	TGTTCCAAGTTTGATGATGATATCTT	57.187	30.769	3.98	0.00	0.00	2.40
1587	1618	6.099557	TCCCCTTTTTGTTTTGTTCATCATCT	59.900	34.615	0.00	0.00	0.00	2.90
1648	1679	1.964448	CACCACCGAGTCTGCTACA	59.036	57.895	0.00	0.00	0.00	2.74
1697	1728	1.875963	CTTTGATTCCTTGCGGCGT	59.124	52.632	9.37	0.00	0.00	5.68
1724	1755	1.106944	CCCGCCTTTGGTGTTGTTCT	61.107	55.000	0.00	0.00	0.00	3.01
1765	1796	1.531677	CGTGGCCTCGCATGTTTAATG	60.532	52.381	15.08	0.00	0.00	1.90
1841	2053	5.613329	TCCGTTAATGTACACAAGGAGTTT	58.387	37.500	0.00	0.00	0.00	2.66
1932	2144	1.632589	GGGGTTCAGTTCCAAGCAAT	58.367	50.000	0.00	0.00	0.00	3.56
1977	2197	9.486497	TCTAGAAATAGTCAGATGAATCATTGC	57.514	33.333	0.00	0.00	0.00	3.56
2107	2629	8.270030	TGGAATCATCTCACTATTCTGAACATT	58.730	33.333	0.00	0.00	31.66	2.71
2141	2663	0.904649	TGCAGGGTGACTAGTGATGG	59.095	55.000	0.00	0.00	0.00	3.51
2336	2869	2.820197	TCGTGCTCACTACTTCTGATGT	59.180	45.455	1.65	1.65	0.00	3.06
2562	3095	1.574702	GGGCCAAGTGTTAGTGTCGC	61.575	60.000	4.39	0.00	0.00	5.19
2620	3153	7.880160	TGTTGCTGATAATTAGGTGCTAAAT	57.120	32.000	7.53	0.00	29.35	1.40
2652	3185	5.829924	CAGGTTTATTAGGATGTGGCTGAAT	59.170	40.000	0.00	0.00	0.00	2.57
2739	3272	2.610374	TGTTACGGTTCAAGTGTTGCTC	59.390	45.455	0.00	0.00	0.00	4.26
2930	3472	6.636666	AATCAAATTTTGCTCGCTTATGTG	57.363	33.333	4.19	0.00	0.00	3.21
2932	3474	6.247727	TCAAATTTTGCTCGCTTATGTGTA	57.752	33.333	4.19	0.00	0.00	2.90

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
7	8	3.193691	CGGTTATGCCCATGGTTTTAACA	59.806	43.478	20.59	8.14	0.00	2.41
73	75	7.601073	AGGTGCACATGTATATATTTCATCG	57.399	36.000	20.43	0.00	0.00	3.84
201	213	3.604875	TCCGATCGTTCTAGCCTTTTT	57.395	42.857	15.09	0.00	0.00	1.94
251	263	3.526931	TCACTCAAGCTATACCACAGC	57.473	47.619	0.00	0.00	39.41	4.40
252	264	6.992063	ATTTTCACTCAAGCTATACCACAG	57.008	37.500	0.00	0.00	0.00	3.66
262	274	7.440856	TGGAACCATTAAAATTTTCACTCAAGC	59.559	33.333	6.72	0.00	0.00	4.01
602	628	2.567049	GGTGAGGGTCGTCGACAG	59.433	66.667	25.64	8.67	33.68	3.51
623	649	4.323477	GCCCCACAGCACCACGTA	62.323	66.667	0.00	0.00	0.00	3.57
859	888	1.519751	CTAGGACGGAGCGGATGAGG	61.520	65.000	0.00	0.00	0.00	3.86
873	902	1.531840	GAGGAGATGCCGGCTAGGA	60.532	63.158	29.70	7.47	45.00	2.94
997	1026	4.592192	CTCGGCGGCGTCCATGAT	62.592	66.667	31.06	0.00	0.00	2.45
1071	1100	1.931635	ACAGAGAACAGAGGAGGGTC	58.068	55.000	0.00	0.00	0.00	4.46
1072	1102	2.380590	AGTACAGAGAACAGAGGAGGGT	59.619	50.000	0.00	0.00	0.00	4.34
1275	1306	0.036010	CCTCCTTTGCCGATGAGTGT	60.036	55.000	0.00	0.00	0.00	3.55
1277	1308	1.078143	GCCTCCTTTGCCGATGAGT	60.078	57.895	0.00	0.00	0.00	3.41
1325	1356	0.113190	AGCCAACAGGGAGAAAAGGG	59.887	55.000	0.00	0.00	40.01	3.95
1326	1357	2.001076	AAGCCAACAGGGAGAAAAGG	57.999	50.000	0.00	0.00	40.01	3.11
1338	1369	1.868469	TGCATTTCAGCAAAGCCAAC	58.132	45.000	0.00	0.00	42.46	3.77
1367	1398	7.497249	CAGATATATACAGATAAAAGGCAGGGC	59.503	40.741	0.00	0.00	0.00	5.19
1390	1421	1.598962	GCAGCACTGTTGGAGCAGA	60.599	57.895	0.00	0.00	39.62	4.26
1518	1549	5.502079	TGGAACAACTGGAAAGTAGAAACA	58.498	37.500	0.00	0.00	31.92	2.83
1560	1591	5.423610	TGATGAACAAAACAAAAAGGGGAGA	59.576	36.000	0.00	0.00	0.00	3.71
1587	1618	1.131883	GTCGCTTCAGCTAACGACCTA	59.868	52.381	15.22	0.00	46.84	3.08
1606	1637	0.110486	ACCGTGATTCCAGCCTTTGT	59.890	50.000	0.00	0.00	0.00	2.83
1607	1638	0.804989	GACCGTGATTCCAGCCTTTG	59.195	55.000	0.00	0.00	0.00	2.77
1611	1642	1.519455	CGAGACCGTGATTCCAGCC	60.519	63.158	0.00	0.00	0.00	4.85
1648	1679	6.591935	TCTTAACCAGTCTGTCATTGAAACT	58.408	36.000	0.00	0.00	0.00	2.66
1711	1742	2.374184	CAGACCCAGAACAACACCAAA	58.626	47.619	0.00	0.00	0.00	3.28
1765	1796	1.569653	AGACTACAGTAAGGCACCCC	58.430	55.000	0.00	0.00	0.00	4.95
1932	2144	1.920351	GAGGAATCAACCCAACCCCTA	59.080	52.381	0.00	0.00	0.00	3.53
1977	2197	9.796120	TTTCCTTGACAACTTTACAAATTACAG	57.204	29.630	0.00	0.00	0.00	2.74
1992	2212	5.686753	TGGCTAAACTACTTTCCTTGACAA	58.313	37.500	0.00	0.00	0.00	3.18
2191	2722	3.400054	GGTGCGCCCCTACTCCTT	61.400	66.667	4.45	0.00	0.00	3.36
2251	2784	0.833409	TGGAAGCAGAGGAGCAGACA	60.833	55.000	0.00	0.00	36.85	3.41
2336	2869	8.510243	AGTGCATCACATATTCATCAACTTAA	57.490	30.769	0.00	0.00	36.74	1.85
2477	3010	2.153645	ACAAATCATGTGCTCGCAGAA	58.846	42.857	0.00	0.00	41.93	3.02
2478	3011	1.812235	ACAAATCATGTGCTCGCAGA	58.188	45.000	0.00	0.00	41.93	4.26
2483	3016	6.063640	TGCATACATACAAATCATGTGCTC	57.936	37.500	0.00	0.00	43.77	4.26
2562	3095	0.029300	CGAGCACCACCACAACAAAG	59.971	55.000	0.00	0.00	0.00	2.77
2593	3126	6.199937	AGCACCTAATTATCAGCAACAAAG	57.800	37.500	6.11	0.00	0.00	2.77
2620	3153	6.262944	CACATCCTAATAAACCTGCAGCATTA	59.737	38.462	8.66	9.91	0.00	1.90
2652	3185	1.065491	CCACGAAGGACATCCAATGGA	60.065	52.381	3.67	3.67	41.22	3.41
2739	3272	8.828688	AAGTTAAGCACTTAGTACTAAACAGG	57.171	34.615	15.95	7.32	44.56	4.00
2818	3351	3.251004	GGAGCTCAACATTGAAGTTTCGT	59.749	43.478	17.19	0.00	36.64	3.85
2930	3472	6.210784	TGAACTACCCAGCCTCATACATATAC	59.789	42.308	0.00	0.00	0.00	1.47
2932	3474	5.155161	TGAACTACCCAGCCTCATACATAT	58.845	41.667	0.00	0.00	0.00	1.78

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.