Multiple sequence alignment - TraesCS2B01G351800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G351800 chr2B 100.000 2781 0 0 1 2781 500838198 500835418 0.000000e+00 5136
1 TraesCS2B01G351800 chr2B 80.034 591 101 13 1939 2518 117698922 117698338 3.310000e-114 422
2 TraesCS2B01G351800 chr2B 88.353 249 27 2 2533 2780 500657741 500657494 5.820000e-77 298
3 TraesCS2B01G351800 chr2D 94.829 1934 62 10 3 1911 425494339 425492419 0.000000e+00 2983
4 TraesCS2B01G351800 chr2D 87.295 244 29 2 2533 2775 196427524 196427282 7.590000e-71 278
5 TraesCS2B01G351800 chr2A 94.046 655 27 1 3 657 562681554 562682196 0.000000e+00 983
6 TraesCS2B01G351800 chr2A 87.150 786 38 19 730 1486 562685939 562686690 0.000000e+00 833
7 TraesCS2B01G351800 chr2A 81.132 901 112 25 1644 2531 562687121 562687976 0.000000e+00 669
8 TraesCS2B01G351800 chr2A 87.552 241 28 2 2533 2772 288374304 288374065 7.590000e-71 278
9 TraesCS2B01G351800 chr2A 92.405 79 3 1 649 727 562685808 562685883 2.930000e-20 110
10 TraesCS2B01G351800 chr5D 81.571 624 105 8 1917 2531 358590451 358591073 8.890000e-140 507
11 TraesCS2B01G351800 chr5D 80.671 626 108 10 1917 2531 126221116 126221739 9.010000e-130 473
12 TraesCS2B01G351800 chr4D 81.546 634 99 13 1910 2531 467946172 467945545 8.890000e-140 507
13 TraesCS2B01G351800 chr4D 88.980 245 26 1 2535 2778 145529398 145529642 4.500000e-78 302
14 TraesCS2B01G351800 chr4D 86.747 249 30 3 2533 2779 94251969 94252216 9.810000e-70 274
15 TraesCS2B01G351800 chr7B 81.145 594 99 10 1949 2531 47609835 47609244 5.430000e-127 464
16 TraesCS2B01G351800 chr7B 87.854 247 29 1 2533 2778 324957635 324957881 3.500000e-74 289
17 TraesCS2B01G351800 chr4A 79.872 626 110 13 1912 2526 32665301 32665921 7.070000e-121 444
18 TraesCS2B01G351800 chr3D 81.227 554 87 11 1976 2516 486791186 486790637 5.500000e-117 431
19 TraesCS2B01G351800 chr3A 80.279 573 96 14 1971 2531 19057054 19056487 1.540000e-112 416
20 TraesCS2B01G351800 chr6D 79.062 597 104 18 1950 2531 413318887 413318297 9.340000e-105 390
21 TraesCS2B01G351800 chr6D 88.655 238 24 3 2533 2768 465268504 465268740 1.260000e-73 287
22 TraesCS2B01G351800 chr4B 88.281 256 26 4 2526 2779 95112585 95112838 1.250000e-78 303
23 TraesCS2B01G351800 chr3B 87.302 252 29 3 2533 2781 289601218 289601469 4.530000e-73 285


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G351800 chr2B 500835418 500838198 2780 True 5136.00 5136 100.00000 1 2781 1 chr2B.!!$R3 2780
1 TraesCS2B01G351800 chr2B 117698338 117698922 584 True 422.00 422 80.03400 1939 2518 1 chr2B.!!$R1 579
2 TraesCS2B01G351800 chr2D 425492419 425494339 1920 True 2983.00 2983 94.82900 3 1911 1 chr2D.!!$R2 1908
3 TraesCS2B01G351800 chr2A 562681554 562687976 6422 False 648.75 983 88.68325 3 2531 4 chr2A.!!$F1 2528
4 TraesCS2B01G351800 chr5D 358590451 358591073 622 False 507.00 507 81.57100 1917 2531 1 chr5D.!!$F2 614
5 TraesCS2B01G351800 chr5D 126221116 126221739 623 False 473.00 473 80.67100 1917 2531 1 chr5D.!!$F1 614
6 TraesCS2B01G351800 chr4D 467945545 467946172 627 True 507.00 507 81.54600 1910 2531 1 chr4D.!!$R1 621
7 TraesCS2B01G351800 chr7B 47609244 47609835 591 True 464.00 464 81.14500 1949 2531 1 chr7B.!!$R1 582
8 TraesCS2B01G351800 chr4A 32665301 32665921 620 False 444.00 444 79.87200 1912 2526 1 chr4A.!!$F1 614
9 TraesCS2B01G351800 chr3D 486790637 486791186 549 True 431.00 431 81.22700 1976 2516 1 chr3D.!!$R1 540
10 TraesCS2B01G351800 chr3A 19056487 19057054 567 True 416.00 416 80.27900 1971 2531 1 chr3A.!!$R1 560
11 TraesCS2B01G351800 chr6D 413318297 413318887 590 True 390.00 390 79.06200 1950 2531 1 chr6D.!!$R1 581

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
882 4569 0.249489 CGATCCTCTTAACCGCCTGG 60.249 60.0 0.0 0.0 42.84 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2668 6676 0.031449 TTTTACGCTGCAAAGTGGCC 59.969 50.0 0.0 0.0 0.0 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 4.988598 AGCCAGGCCAACGACACG 62.989 66.667 8.22 0.00 0.00 4.49
122 123 1.069765 CGTGCTGTCCAACCTCACT 59.930 57.895 0.00 0.00 0.00 3.41
224 225 0.606401 CGAGCCAGGTGTCCATGTTT 60.606 55.000 0.00 0.00 0.00 2.83
564 565 2.203788 TTCTGCTGGTCTCCGGGT 60.204 61.111 0.00 0.00 0.00 5.28
694 4315 8.126700 GGTGTACTACAACATAATGTAAATGGC 58.873 37.037 0.00 0.00 35.45 4.40
803 4479 4.203828 CGTGAATCAACGTCTCTGTTTTG 58.796 43.478 0.00 0.00 38.74 2.44
834 4510 3.007723 TCTGAAGAACAAGAGCTCTGCAT 59.992 43.478 19.06 6.02 25.38 3.96
881 4568 0.744874 TCGATCCTCTTAACCGCCTG 59.255 55.000 0.00 0.00 0.00 4.85
882 4569 0.249489 CGATCCTCTTAACCGCCTGG 60.249 60.000 0.00 0.00 42.84 4.45
886 4573 1.002773 TCCTCTTAACCGCCTGGAAAC 59.997 52.381 0.00 0.00 39.21 2.78
890 4577 2.235402 TCTTAACCGCCTGGAAACTAGG 59.765 50.000 0.00 0.00 39.21 3.02
891 4578 1.941377 TAACCGCCTGGAAACTAGGA 58.059 50.000 0.00 0.00 37.52 2.94
892 4579 1.061546 AACCGCCTGGAAACTAGGAA 58.938 50.000 0.00 0.00 37.52 3.36
893 4580 0.613777 ACCGCCTGGAAACTAGGAAG 59.386 55.000 0.00 0.00 37.52 3.46
894 4581 0.744771 CCGCCTGGAAACTAGGAAGC 60.745 60.000 0.00 0.00 37.52 3.86
895 4582 0.250513 CGCCTGGAAACTAGGAAGCT 59.749 55.000 0.00 0.00 37.52 3.74
896 4583 1.480954 CGCCTGGAAACTAGGAAGCTA 59.519 52.381 0.00 0.00 37.52 3.32
897 4584 2.482142 CGCCTGGAAACTAGGAAGCTAG 60.482 54.545 0.00 0.00 37.52 3.42
898 4585 2.743510 GCCTGGAAACTAGGAAGCTAGC 60.744 54.545 6.62 6.62 37.52 3.42
899 4586 2.158885 CCTGGAAACTAGGAAGCTAGCC 60.159 54.545 12.13 0.00 37.52 3.93
1008 4706 4.849310 GCCGCCGCAATGTCCCTA 62.849 66.667 0.00 0.00 34.03 3.53
1155 4853 0.596577 TCGTGGAGGTGTTCGAGAAG 59.403 55.000 0.00 0.00 0.00 2.85
1238 4936 0.668401 GTCCACCCGTCGGTAACTTG 60.668 60.000 11.06 0.00 42.04 3.16
1286 4984 7.758613 TCATACTATCGTCTCGATCTGATAC 57.241 40.000 7.90 0.00 43.45 2.24
1296 5000 2.360801 TCGATCTGATACGATGTTGGCA 59.639 45.455 7.70 0.00 33.62 4.92
1498 5205 2.671070 CTGTCGAGGTGGGCCAAT 59.329 61.111 8.40 0.00 37.19 3.16
1517 5224 2.190578 CCAAGATCCTCGGCACCC 59.809 66.667 0.00 0.00 0.00 4.61
1706 5686 2.817396 GGAAGAGCTCTGCGTGCC 60.817 66.667 19.06 10.26 0.00 5.01
1839 5819 6.648879 ATTCCTCTACTGACTGAGATTAGC 57.351 41.667 0.00 0.00 32.44 3.09
1843 5823 5.359576 CCTCTACTGACTGAGATTAGCAGTT 59.640 44.000 0.00 0.00 45.94 3.16
1846 5826 8.526667 TCTACTGACTGAGATTAGCAGTTTAT 57.473 34.615 0.00 0.00 45.94 1.40
1855 5835 6.126768 TGAGATTAGCAGTTTATGTTAGGGCT 60.127 38.462 0.00 0.00 0.00 5.19
1968 5950 3.009473 AGCCAACATCCGATATAGCCAAT 59.991 43.478 0.00 0.00 0.00 3.16
2147 6150 3.023832 CCAAACAACACCTCCAAGAAGT 58.976 45.455 0.00 0.00 0.00 3.01
2158 6161 2.733593 AAGAAGTGACGCGGCGAC 60.734 61.111 30.94 23.79 0.00 5.19
2206 6209 4.253257 GTACGCGGCGAGGAGGAG 62.253 72.222 30.94 0.00 0.00 3.69
2283 6288 3.103911 GTCGGTGTCGGACAAGCG 61.104 66.667 13.23 16.90 38.58 4.68
2291 6296 4.003788 CGGACAAGCGGACAGGGT 62.004 66.667 0.00 0.00 0.00 4.34
2313 6319 1.123077 TCTCCTGATCCCAACCATCG 58.877 55.000 0.00 0.00 0.00 3.84
2314 6320 0.833287 CTCCTGATCCCAACCATCGT 59.167 55.000 0.00 0.00 0.00 3.73
2399 6405 2.027605 CACGCTGTCTCACCACGT 59.972 61.111 0.00 0.00 37.47 4.49
2416 6423 1.278172 CGTCACTGAGAAGTGGTGCG 61.278 60.000 6.06 5.37 40.03 5.34
2449 6456 0.396001 AGAAGAGTCGGGACTAGGGC 60.396 60.000 0.48 0.00 42.66 5.19
2456 6463 2.998949 GGGACTAGGGCCAACAGG 59.001 66.667 6.18 0.00 0.00 4.00
2457 6464 1.923909 GGGACTAGGGCCAACAGGT 60.924 63.158 6.18 0.00 0.00 4.00
2494 6502 2.978824 CCCGACCTTCACCGTCAT 59.021 61.111 0.00 0.00 0.00 3.06
2496 6504 1.589630 CCGACCTTCACCGTCATCA 59.410 57.895 0.00 0.00 0.00 3.07
2526 6534 3.873781 CCGGAGGCAACAATAGGAA 57.126 52.632 0.00 0.00 46.14 3.36
2531 6539 4.389374 CGGAGGCAACAATAGGAACATAT 58.611 43.478 0.00 0.00 41.41 1.78
2532 6540 4.821805 CGGAGGCAACAATAGGAACATATT 59.178 41.667 0.00 0.00 41.41 1.28
2533 6541 5.277974 CGGAGGCAACAATAGGAACATATTG 60.278 44.000 14.71 14.71 44.96 1.90
2539 6547 4.389664 CAATAGGAACATATTGTCGGCG 57.610 45.455 0.00 0.00 38.03 6.46
2540 6548 3.746045 ATAGGAACATATTGTCGGCGT 57.254 42.857 6.85 0.00 0.00 5.68
2541 6549 1.651987 AGGAACATATTGTCGGCGTG 58.348 50.000 6.85 0.00 0.00 5.34
2542 6550 0.655733 GGAACATATTGTCGGCGTGG 59.344 55.000 6.85 0.00 0.00 4.94
2543 6551 1.647346 GAACATATTGTCGGCGTGGA 58.353 50.000 6.85 0.00 0.00 4.02
2544 6552 2.004017 GAACATATTGTCGGCGTGGAA 58.996 47.619 6.85 0.00 0.00 3.53
2545 6553 1.651987 ACATATTGTCGGCGTGGAAG 58.348 50.000 6.85 0.00 0.00 3.46
2546 6554 0.304705 CATATTGTCGGCGTGGAAGC 59.695 55.000 6.85 0.00 0.00 3.86
2547 6555 0.107897 ATATTGTCGGCGTGGAAGCA 60.108 50.000 6.85 0.00 39.27 3.91
2548 6556 0.107897 TATTGTCGGCGTGGAAGCAT 60.108 50.000 6.85 0.00 39.27 3.79
2549 6557 1.647545 ATTGTCGGCGTGGAAGCATG 61.648 55.000 6.85 0.00 39.27 4.06
2550 6558 2.434185 GTCGGCGTGGAAGCATGA 60.434 61.111 6.85 0.00 39.27 3.07
2551 6559 1.815421 GTCGGCGTGGAAGCATGAT 60.815 57.895 6.85 0.00 39.27 2.45
2552 6560 1.521457 TCGGCGTGGAAGCATGATC 60.521 57.895 6.85 0.00 39.27 2.92
2553 6561 1.815003 CGGCGTGGAAGCATGATCA 60.815 57.895 0.00 0.00 39.27 2.92
2554 6562 1.162181 CGGCGTGGAAGCATGATCAT 61.162 55.000 1.18 1.18 39.27 2.45
2555 6563 0.590195 GGCGTGGAAGCATGATCATC 59.410 55.000 4.86 1.17 39.27 2.92
2556 6564 0.590195 GCGTGGAAGCATGATCATCC 59.410 55.000 4.86 5.64 37.05 3.51
2557 6565 1.957668 CGTGGAAGCATGATCATCCA 58.042 50.000 11.04 11.04 39.57 3.41
2558 6566 2.501261 CGTGGAAGCATGATCATCCAT 58.499 47.619 16.79 0.00 43.41 3.41
2559 6567 2.225727 CGTGGAAGCATGATCATCCATG 59.774 50.000 16.79 16.90 43.41 3.66
2560 6568 2.557056 GTGGAAGCATGATCATCCATGG 59.443 50.000 16.79 4.97 43.41 3.66
2561 6569 2.168496 GGAAGCATGATCATCCATGGG 58.832 52.381 13.02 0.00 43.02 4.00
2562 6570 2.168496 GAAGCATGATCATCCATGGGG 58.832 52.381 13.02 4.84 43.02 4.96
2563 6571 0.251653 AGCATGATCATCCATGGGGC 60.252 55.000 13.02 4.49 43.02 5.80
2564 6572 0.541063 GCATGATCATCCATGGGGCA 60.541 55.000 13.02 3.72 43.02 5.36
2565 6573 1.895422 GCATGATCATCCATGGGGCAT 60.895 52.381 13.02 5.95 43.02 4.40
2566 6574 1.824852 CATGATCATCCATGGGGCATG 59.175 52.381 13.02 13.83 40.04 4.06
2581 6589 2.204748 CATGGATGCCCCTTTGTGG 58.795 57.895 0.00 0.00 35.38 4.17
2582 6590 0.615544 CATGGATGCCCCTTTGTGGT 60.616 55.000 0.00 0.00 35.38 4.16
2583 6591 0.116940 ATGGATGCCCCTTTGTGGTT 59.883 50.000 0.00 0.00 35.38 3.67
2584 6592 0.541764 TGGATGCCCCTTTGTGGTTC 60.542 55.000 0.00 0.00 35.38 3.62
2585 6593 1.595093 GGATGCCCCTTTGTGGTTCG 61.595 60.000 0.00 0.00 0.00 3.95
2586 6594 0.893727 GATGCCCCTTTGTGGTTCGT 60.894 55.000 0.00 0.00 0.00 3.85
2587 6595 0.893727 ATGCCCCTTTGTGGTTCGTC 60.894 55.000 0.00 0.00 0.00 4.20
2588 6596 1.527380 GCCCCTTTGTGGTTCGTCA 60.527 57.895 0.00 0.00 0.00 4.35
2589 6597 1.104577 GCCCCTTTGTGGTTCGTCAA 61.105 55.000 0.00 0.00 0.00 3.18
2590 6598 0.951558 CCCCTTTGTGGTTCGTCAAG 59.048 55.000 0.00 0.00 0.00 3.02
2591 6599 0.951558 CCCTTTGTGGTTCGTCAAGG 59.048 55.000 0.00 0.00 0.00 3.61
2592 6600 0.951558 CCTTTGTGGTTCGTCAAGGG 59.048 55.000 0.00 0.00 35.23 3.95
2593 6601 0.951558 CTTTGTGGTTCGTCAAGGGG 59.048 55.000 0.00 0.00 0.00 4.79
2594 6602 0.547075 TTTGTGGTTCGTCAAGGGGA 59.453 50.000 0.00 0.00 0.00 4.81
2595 6603 0.179040 TTGTGGTTCGTCAAGGGGAC 60.179 55.000 0.00 0.00 43.36 4.46
2604 6612 2.403252 GTCAAGGGGACGATCACATT 57.597 50.000 0.00 0.00 36.65 2.71
2605 6613 2.009774 GTCAAGGGGACGATCACATTG 58.990 52.381 7.89 7.89 42.37 2.82
2606 6614 0.734889 CAAGGGGACGATCACATTGC 59.265 55.000 0.00 0.00 34.71 3.56
2607 6615 0.327924 AAGGGGACGATCACATTGCA 59.672 50.000 0.00 0.00 0.00 4.08
2608 6616 0.392998 AGGGGACGATCACATTGCAC 60.393 55.000 0.00 0.00 0.00 4.57
2609 6617 0.676466 GGGGACGATCACATTGCACA 60.676 55.000 0.00 0.00 0.00 4.57
2610 6618 1.164411 GGGACGATCACATTGCACAA 58.836 50.000 0.00 0.00 0.00 3.33
2611 6619 1.539388 GGGACGATCACATTGCACAAA 59.461 47.619 0.00 0.00 0.00 2.83
2612 6620 2.414559 GGGACGATCACATTGCACAAAG 60.415 50.000 0.00 0.00 0.00 2.77
2613 6621 2.483877 GGACGATCACATTGCACAAAGA 59.516 45.455 0.00 0.00 0.00 2.52
2614 6622 3.425359 GGACGATCACATTGCACAAAGAG 60.425 47.826 0.00 0.00 0.00 2.85
2615 6623 2.095567 ACGATCACATTGCACAAAGAGC 60.096 45.455 0.00 0.00 0.00 4.09
2616 6624 2.095617 CGATCACATTGCACAAAGAGCA 60.096 45.455 0.00 0.00 40.85 4.26
2617 6625 3.499048 GATCACATTGCACAAAGAGCAG 58.501 45.455 0.00 0.00 43.75 4.24
2618 6626 2.574450 TCACATTGCACAAAGAGCAGA 58.426 42.857 0.00 0.00 43.75 4.26
2619 6627 2.950975 TCACATTGCACAAAGAGCAGAA 59.049 40.909 0.00 0.00 43.75 3.02
2620 6628 3.380954 TCACATTGCACAAAGAGCAGAAA 59.619 39.130 0.00 0.00 43.75 2.52
2621 6629 3.488310 CACATTGCACAAAGAGCAGAAAC 59.512 43.478 0.00 0.00 43.75 2.78
2622 6630 3.382546 ACATTGCACAAAGAGCAGAAACT 59.617 39.130 0.00 0.00 43.75 2.66
2623 6631 3.425577 TTGCACAAAGAGCAGAAACTG 57.574 42.857 0.00 0.00 43.75 3.16
2660 6668 2.152016 GTGCACACCTCTCTTTTACCC 58.848 52.381 13.17 0.00 0.00 3.69
2661 6669 1.771854 TGCACACCTCTCTTTTACCCA 59.228 47.619 0.00 0.00 0.00 4.51
2662 6670 2.224523 TGCACACCTCTCTTTTACCCAG 60.225 50.000 0.00 0.00 0.00 4.45
2663 6671 2.876079 GCACACCTCTCTTTTACCCAGG 60.876 54.545 0.00 0.00 0.00 4.45
2664 6672 2.372172 CACACCTCTCTTTTACCCAGGT 59.628 50.000 0.00 0.00 38.02 4.00
2665 6673 3.053826 ACACCTCTCTTTTACCCAGGTT 58.946 45.455 0.00 0.00 35.13 3.50
2666 6674 3.072622 ACACCTCTCTTTTACCCAGGTTC 59.927 47.826 0.00 0.00 35.13 3.62
2667 6675 2.302157 ACCTCTCTTTTACCCAGGTTCG 59.698 50.000 0.00 0.00 33.41 3.95
2668 6676 2.354805 CCTCTCTTTTACCCAGGTTCGG 60.355 54.545 0.00 0.00 0.00 4.30
2675 6683 3.966543 CCCAGGTTCGGGCCACTT 61.967 66.667 4.39 0.00 40.07 3.16
2676 6684 2.115266 CCAGGTTCGGGCCACTTT 59.885 61.111 4.39 0.00 0.00 2.66
2677 6685 2.268076 CCAGGTTCGGGCCACTTTG 61.268 63.158 4.39 0.00 0.00 2.77
2678 6686 2.597510 AGGTTCGGGCCACTTTGC 60.598 61.111 4.39 0.00 0.00 3.68
2679 6687 2.909965 GGTTCGGGCCACTTTGCA 60.910 61.111 4.39 0.00 0.00 4.08
2680 6688 2.644992 GTTCGGGCCACTTTGCAG 59.355 61.111 4.39 0.00 0.00 4.41
2681 6689 3.294493 TTCGGGCCACTTTGCAGC 61.294 61.111 4.39 0.00 0.00 5.25
2684 6692 2.671619 GGGCCACTTTGCAGCGTA 60.672 61.111 4.39 0.00 0.00 4.42
2685 6693 2.265182 GGGCCACTTTGCAGCGTAA 61.265 57.895 4.39 0.00 0.00 3.18
2686 6694 1.657556 GGCCACTTTGCAGCGTAAA 59.342 52.632 0.00 0.00 0.00 2.01
2687 6695 0.031449 GGCCACTTTGCAGCGTAAAA 59.969 50.000 0.00 0.00 0.00 1.52
2688 6696 1.128513 GCCACTTTGCAGCGTAAAAC 58.871 50.000 0.00 0.00 0.00 2.43
2689 6697 1.766069 CCACTTTGCAGCGTAAAACC 58.234 50.000 0.00 0.00 0.00 3.27
2690 6698 1.601914 CCACTTTGCAGCGTAAAACCC 60.602 52.381 0.00 0.00 0.00 4.11
2691 6699 1.336755 CACTTTGCAGCGTAAAACCCT 59.663 47.619 0.00 0.00 0.00 4.34
2692 6700 2.550606 CACTTTGCAGCGTAAAACCCTA 59.449 45.455 0.00 0.00 0.00 3.53
2693 6701 2.551032 ACTTTGCAGCGTAAAACCCTAC 59.449 45.455 0.00 0.00 0.00 3.18
2694 6702 2.554370 TTGCAGCGTAAAACCCTACT 57.446 45.000 0.00 0.00 0.00 2.57
2695 6703 2.088950 TGCAGCGTAAAACCCTACTC 57.911 50.000 0.00 0.00 0.00 2.59
2696 6704 1.338389 TGCAGCGTAAAACCCTACTCC 60.338 52.381 0.00 0.00 0.00 3.85
2697 6705 1.066358 GCAGCGTAAAACCCTACTCCT 60.066 52.381 0.00 0.00 0.00 3.69
2698 6706 2.167075 GCAGCGTAAAACCCTACTCCTA 59.833 50.000 0.00 0.00 0.00 2.94
2699 6707 3.778618 CAGCGTAAAACCCTACTCCTAC 58.221 50.000 0.00 0.00 0.00 3.18
2700 6708 3.446516 CAGCGTAAAACCCTACTCCTACT 59.553 47.826 0.00 0.00 0.00 2.57
2701 6709 3.446516 AGCGTAAAACCCTACTCCTACTG 59.553 47.826 0.00 0.00 0.00 2.74
2702 6710 3.194329 GCGTAAAACCCTACTCCTACTGT 59.806 47.826 0.00 0.00 0.00 3.55
2703 6711 4.741342 CGTAAAACCCTACTCCTACTGTG 58.259 47.826 0.00 0.00 0.00 3.66
2704 6712 4.381292 CGTAAAACCCTACTCCTACTGTGG 60.381 50.000 0.00 0.00 0.00 4.17
2705 6713 2.249309 AACCCTACTCCTACTGTGGG 57.751 55.000 3.43 3.43 40.37 4.61
2706 6714 3.225608 CCCTACTCCTACTGTGGGG 57.774 63.158 10.52 3.95 46.97 4.96
2708 6716 2.777459 CCTACTCCTACTGTGGGGAT 57.223 55.000 10.52 1.63 33.22 3.85
2709 6717 3.047695 CCTACTCCTACTGTGGGGATT 57.952 52.381 10.52 5.28 33.22 3.01
2710 6718 2.700897 CCTACTCCTACTGTGGGGATTG 59.299 54.545 10.52 1.82 33.22 2.67
2711 6719 2.642171 ACTCCTACTGTGGGGATTGA 57.358 50.000 10.52 0.00 0.00 2.57
2712 6720 3.136641 ACTCCTACTGTGGGGATTGAT 57.863 47.619 10.52 0.00 0.00 2.57
2713 6721 3.041946 ACTCCTACTGTGGGGATTGATC 58.958 50.000 10.52 0.00 0.00 2.92
2714 6722 3.310954 ACTCCTACTGTGGGGATTGATCT 60.311 47.826 10.52 0.00 0.00 2.75
2715 6723 3.041211 TCCTACTGTGGGGATTGATCTG 58.959 50.000 10.52 0.00 0.00 2.90
2716 6724 2.105477 CCTACTGTGGGGATTGATCTGG 59.895 54.545 1.64 0.00 0.00 3.86
2717 6725 1.971149 ACTGTGGGGATTGATCTGGA 58.029 50.000 0.00 0.00 0.00 3.86
2718 6726 1.842562 ACTGTGGGGATTGATCTGGAG 59.157 52.381 0.00 0.00 0.00 3.86
2719 6727 1.142465 CTGTGGGGATTGATCTGGAGG 59.858 57.143 0.00 0.00 0.00 4.30
2720 6728 1.274358 TGTGGGGATTGATCTGGAGGA 60.274 52.381 0.00 0.00 0.00 3.71
2721 6729 1.846439 GTGGGGATTGATCTGGAGGAA 59.154 52.381 0.00 0.00 0.00 3.36
2722 6730 1.846439 TGGGGATTGATCTGGAGGAAC 59.154 52.381 0.00 0.00 0.00 3.62
2723 6731 1.202698 GGGGATTGATCTGGAGGAACG 60.203 57.143 0.00 0.00 0.00 3.95
2724 6732 1.587547 GGATTGATCTGGAGGAACGC 58.412 55.000 0.00 0.00 0.00 4.84
2725 6733 1.212616 GATTGATCTGGAGGAACGCG 58.787 55.000 3.53 3.53 0.00 6.01
2726 6734 0.824109 ATTGATCTGGAGGAACGCGA 59.176 50.000 15.93 0.00 0.00 5.87
2727 6735 0.606096 TTGATCTGGAGGAACGCGAA 59.394 50.000 15.93 0.00 0.00 4.70
2728 6736 0.173481 TGATCTGGAGGAACGCGAAG 59.827 55.000 15.93 0.00 0.00 3.79
2729 6737 0.456221 GATCTGGAGGAACGCGAAGA 59.544 55.000 15.93 4.11 0.00 2.87
2730 6738 0.173708 ATCTGGAGGAACGCGAAGAC 59.826 55.000 15.93 0.00 0.00 3.01
2731 6739 1.176619 TCTGGAGGAACGCGAAGACA 61.177 55.000 15.93 2.79 0.00 3.41
2732 6740 1.006571 TGGAGGAACGCGAAGACAC 60.007 57.895 15.93 0.00 0.00 3.67
2733 6741 2.087009 GGAGGAACGCGAAGACACG 61.087 63.158 15.93 0.00 0.00 4.49
2734 6742 1.081641 GAGGAACGCGAAGACACGA 60.082 57.895 15.93 0.00 35.09 4.35
2735 6743 1.335697 GAGGAACGCGAAGACACGAC 61.336 60.000 15.93 0.00 35.09 4.34
2736 6744 1.659335 GGAACGCGAAGACACGACA 60.659 57.895 15.93 0.00 35.09 4.35
2737 6745 1.007336 GGAACGCGAAGACACGACAT 61.007 55.000 15.93 0.00 35.09 3.06
2738 6746 0.091344 GAACGCGAAGACACGACATG 59.909 55.000 15.93 0.00 35.09 3.21
2739 6747 1.886861 AACGCGAAGACACGACATGC 61.887 55.000 15.93 0.00 35.09 4.06
2740 6748 2.088763 CGCGAAGACACGACATGCT 61.089 57.895 0.00 0.00 35.09 3.79
2741 6749 1.704582 GCGAAGACACGACATGCTC 59.295 57.895 0.00 0.00 35.09 4.26
2742 6750 1.008875 GCGAAGACACGACATGCTCA 61.009 55.000 0.00 0.00 35.09 4.26
2743 6751 1.418373 CGAAGACACGACATGCTCAA 58.582 50.000 0.00 0.00 35.09 3.02
2744 6752 1.388093 CGAAGACACGACATGCTCAAG 59.612 52.381 0.00 0.00 35.09 3.02
2745 6753 1.127582 GAAGACACGACATGCTCAAGC 59.872 52.381 0.00 0.00 42.50 4.01
2746 6754 0.319728 AGACACGACATGCTCAAGCT 59.680 50.000 3.32 0.00 42.66 3.74
2747 6755 0.718343 GACACGACATGCTCAAGCTC 59.282 55.000 3.32 0.00 42.66 4.09
2748 6756 1.010935 ACACGACATGCTCAAGCTCG 61.011 55.000 9.69 9.69 42.66 5.03
2749 6757 1.446792 ACGACATGCTCAAGCTCGG 60.447 57.895 14.17 2.88 39.53 4.63
2750 6758 2.806856 CGACATGCTCAAGCTCGGC 61.807 63.158 3.32 0.00 42.66 5.54
2751 6759 1.742880 GACATGCTCAAGCTCGGCA 60.743 57.895 9.93 9.93 42.66 5.69
2752 6760 1.300971 GACATGCTCAAGCTCGGCAA 61.301 55.000 11.22 0.00 42.66 4.52
2753 6761 1.303799 ACATGCTCAAGCTCGGCAAG 61.304 55.000 11.22 9.77 42.66 4.01
2754 6762 1.748122 ATGCTCAAGCTCGGCAAGG 60.748 57.895 11.22 0.00 42.66 3.61
2755 6763 3.130160 GCTCAAGCTCGGCAAGGG 61.130 66.667 0.00 0.00 38.21 3.95
2756 6764 2.348998 CTCAAGCTCGGCAAGGGT 59.651 61.111 0.00 0.00 0.00 4.34
2757 6765 2.032528 TCAAGCTCGGCAAGGGTG 59.967 61.111 0.00 0.00 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.401148 CGTCTTGATCACGTCGGTCTT 60.401 52.381 10.25 0.00 32.41 3.01
1 2 0.168348 CGTCTTGATCACGTCGGTCT 59.832 55.000 10.25 0.00 32.41 3.85
44 45 2.045926 ACGGTGATGCCCTGCTTC 60.046 61.111 0.00 0.00 34.04 3.86
167 168 0.033405 AGGCCGAGAGCTGGTAGTAA 60.033 55.000 0.00 0.00 43.05 2.24
211 212 1.202710 TGTACGCAAACATGGACACCT 60.203 47.619 0.00 0.00 0.00 4.00
224 225 0.102663 TGACGTTCACCTTGTACGCA 59.897 50.000 5.39 2.85 43.43 5.24
564 565 7.827236 AGAATTATCCGACTACACCATCAAAAA 59.173 33.333 0.00 0.00 0.00 1.94
675 4296 5.123979 TGTGCGCCATTTACATTATGTTGTA 59.876 36.000 4.18 0.00 0.00 2.41
676 4297 4.082517 TGTGCGCCATTTACATTATGTTGT 60.083 37.500 4.18 0.00 0.00 3.32
677 4298 4.419280 TGTGCGCCATTTACATTATGTTG 58.581 39.130 4.18 0.00 0.00 3.33
694 4315 4.460505 CAGTGCATACATTATGATGTGCG 58.539 43.478 13.08 5.26 45.80 5.34
834 4510 0.599204 GGTGTCAAAAGACGGAGCGA 60.599 55.000 0.00 0.00 0.00 4.93
854 4541 3.007398 GGTTAAGAGGATCGATGCAGGAT 59.993 47.826 19.67 2.90 42.67 3.24
881 4568 1.755380 TCGGCTAGCTTCCTAGTTTCC 59.245 52.381 15.72 0.00 42.51 3.13
882 4569 3.449632 CTTCGGCTAGCTTCCTAGTTTC 58.550 50.000 15.72 0.00 42.51 2.78
886 4573 3.579066 GCTTCGGCTAGCTTCCTAG 57.421 57.895 15.72 6.60 43.23 3.02
909 4596 0.884704 TCCGTTCTTTGTGCAGAGGC 60.885 55.000 0.00 0.00 41.68 4.70
946 4644 3.730761 GCAACTGCCGCAGTGAGG 61.731 66.667 26.37 18.71 44.62 3.86
947 4645 2.974148 TGCAACTGCCGCAGTGAG 60.974 61.111 26.37 21.30 44.62 3.51
948 4646 3.279116 GTGCAACTGCCGCAGTGA 61.279 61.111 26.37 11.01 44.62 3.41
1182 4880 4.796495 GCGGGGGCGAAGATGGTT 62.796 66.667 0.00 0.00 0.00 3.67
1286 4984 4.531708 CAACGGTTGCCAACATCG 57.468 55.556 10.18 7.27 0.00 3.84
1296 5000 2.124320 ACAGCACCTGCAACGGTT 60.124 55.556 0.00 0.00 45.16 4.44
1478 5185 4.329545 GGCCCACCTCGACAGCAA 62.330 66.667 0.00 0.00 0.00 3.91
1677 5657 2.049627 GCTCTTCCCATCCGCCTCAT 62.050 60.000 0.00 0.00 0.00 2.90
1819 5799 4.887071 ACTGCTAATCTCAGTCAGTAGAGG 59.113 45.833 0.00 0.00 40.47 3.69
1839 5819 5.615925 ACTCCTAGCCCTAACATAAACTG 57.384 43.478 0.00 0.00 0.00 3.16
1843 5823 6.380846 TCGTTTAACTCCTAGCCCTAACATAA 59.619 38.462 0.00 0.00 0.00 1.90
1846 5826 4.088634 TCGTTTAACTCCTAGCCCTAACA 58.911 43.478 0.00 0.00 0.00 2.41
1855 5835 7.646526 CGTCAACATATCATCGTTTAACTCCTA 59.353 37.037 0.00 0.00 0.00 2.94
1933 5914 8.786826 TCGGATGTTGGCTATATTAATTTAGG 57.213 34.615 12.94 0.00 0.00 2.69
1942 5924 5.602561 TGGCTATATCGGATGTTGGCTATAT 59.397 40.000 18.87 0.00 0.00 0.86
1943 5925 4.959839 TGGCTATATCGGATGTTGGCTATA 59.040 41.667 18.87 2.11 0.00 1.31
1945 5927 3.169908 TGGCTATATCGGATGTTGGCTA 58.830 45.455 18.87 8.14 0.00 3.93
1946 5928 1.977854 TGGCTATATCGGATGTTGGCT 59.022 47.619 18.87 0.00 0.00 4.75
1947 5929 2.472695 TGGCTATATCGGATGTTGGC 57.527 50.000 13.59 13.59 0.00 4.52
1948 5930 4.578871 TCATTGGCTATATCGGATGTTGG 58.421 43.478 0.00 0.00 0.00 3.77
1949 5931 7.267857 TCTATCATTGGCTATATCGGATGTTG 58.732 38.462 0.00 0.00 0.00 3.33
1951 5933 7.440198 CATCTATCATTGGCTATATCGGATGT 58.560 38.462 0.00 0.00 0.00 3.06
1953 5935 6.269538 AGCATCTATCATTGGCTATATCGGAT 59.730 38.462 0.00 0.00 32.09 4.18
1961 5943 3.008375 GTCCCAGCATCTATCATTGGCTA 59.992 47.826 0.00 0.00 32.71 3.93
1968 5950 1.688735 CTTCCGTCCCAGCATCTATCA 59.311 52.381 0.00 0.00 0.00 2.15
2037 6037 2.112475 TGTTTTTGTCGATTGCCGTG 57.888 45.000 0.00 0.00 39.75 4.94
2095 6098 1.187087 CGGAGTCTAGGAGCTTGGTT 58.813 55.000 0.00 0.00 0.00 3.67
2167 6170 3.680786 GGAAACCCTTGGCGGCAC 61.681 66.667 12.92 0.00 0.00 5.01
2291 6296 3.622206 CGATGGTTGGGATCAGGAGAAAA 60.622 47.826 0.00 0.00 0.00 2.29
2313 6319 4.200283 CTCCGGAGCGCCTGAGAC 62.200 72.222 20.67 0.00 45.43 3.36
2416 6423 1.458827 CTCTTCTTCTTCGCTGTGCAC 59.541 52.381 10.75 10.75 0.00 4.57
2449 6456 1.898574 GTGCTGGTGGACCTGTTGG 60.899 63.158 4.79 0.00 37.30 3.77
2513 6521 5.505654 CCGACAATATGTTCCTATTGTTGCC 60.506 44.000 14.58 3.00 46.93 4.52
2526 6534 1.651987 CTTCCACGCCGACAATATGT 58.348 50.000 0.00 0.00 0.00 2.29
2531 6539 2.031919 ATGCTTCCACGCCGACAA 59.968 55.556 0.00 0.00 0.00 3.18
2532 6540 2.520465 ATCATGCTTCCACGCCGACA 62.520 55.000 0.00 0.00 0.00 4.35
2533 6541 1.766143 GATCATGCTTCCACGCCGAC 61.766 60.000 0.00 0.00 0.00 4.79
2534 6542 1.521457 GATCATGCTTCCACGCCGA 60.521 57.895 0.00 0.00 0.00 5.54
2535 6543 1.162181 ATGATCATGCTTCCACGCCG 61.162 55.000 7.59 0.00 0.00 6.46
2536 6544 0.590195 GATGATCATGCTTCCACGCC 59.410 55.000 14.30 0.00 0.00 5.68
2537 6545 0.590195 GGATGATCATGCTTCCACGC 59.410 55.000 19.05 0.00 33.54 5.34
2538 6546 1.957668 TGGATGATCATGCTTCCACG 58.042 50.000 25.23 0.00 37.23 4.94
2539 6547 2.557056 CCATGGATGATCATGCTTCCAC 59.443 50.000 25.23 4.44 42.63 4.02
2540 6548 2.490168 CCCATGGATGATCATGCTTCCA 60.490 50.000 25.23 20.70 43.57 3.53
2541 6549 2.168496 CCCATGGATGATCATGCTTCC 58.832 52.381 25.23 15.99 42.19 3.46
2542 6550 2.168496 CCCCATGGATGATCATGCTTC 58.832 52.381 25.23 7.10 42.19 3.86
2543 6551 1.826042 GCCCCATGGATGATCATGCTT 60.826 52.381 25.23 17.58 42.19 3.91
2544 6552 0.251653 GCCCCATGGATGATCATGCT 60.252 55.000 25.23 10.36 42.19 3.79
2545 6553 0.541063 TGCCCCATGGATGATCATGC 60.541 55.000 19.45 19.45 42.19 4.06
2546 6554 1.824852 CATGCCCCATGGATGATCATG 59.175 52.381 14.30 13.90 42.92 3.07
2547 6555 2.231716 CATGCCCCATGGATGATCAT 57.768 50.000 15.22 8.25 38.11 2.45
2548 6556 3.757836 CATGCCCCATGGATGATCA 57.242 52.632 15.22 0.00 38.11 2.92
2563 6571 0.615544 ACCACAAAGGGGCATCCATG 60.616 55.000 0.00 0.00 43.89 3.66
2564 6572 0.116940 AACCACAAAGGGGCATCCAT 59.883 50.000 0.00 0.00 43.89 3.41
2565 6573 0.541764 GAACCACAAAGGGGCATCCA 60.542 55.000 0.00 0.00 43.89 3.41
2566 6574 1.595093 CGAACCACAAAGGGGCATCC 61.595 60.000 0.00 0.00 43.89 3.51
2567 6575 0.893727 ACGAACCACAAAGGGGCATC 60.894 55.000 0.00 0.00 43.89 3.91
2568 6576 0.893727 GACGAACCACAAAGGGGCAT 60.894 55.000 0.00 0.00 43.89 4.40
2569 6577 1.527380 GACGAACCACAAAGGGGCA 60.527 57.895 0.00 0.00 43.89 5.36
2570 6578 1.104577 TTGACGAACCACAAAGGGGC 61.105 55.000 0.00 0.00 43.89 5.80
2571 6579 0.951558 CTTGACGAACCACAAAGGGG 59.048 55.000 0.00 0.00 43.89 4.79
2572 6580 0.951558 CCTTGACGAACCACAAAGGG 59.048 55.000 0.00 0.00 43.89 3.95
2573 6581 0.951558 CCCTTGACGAACCACAAAGG 59.048 55.000 0.00 0.00 45.67 3.11
2574 6582 0.951558 CCCCTTGACGAACCACAAAG 59.048 55.000 0.00 0.00 0.00 2.77
2575 6583 0.547075 TCCCCTTGACGAACCACAAA 59.453 50.000 0.00 0.00 0.00 2.83
2576 6584 0.179040 GTCCCCTTGACGAACCACAA 60.179 55.000 0.00 0.00 33.49 3.33
2577 6585 1.448497 GTCCCCTTGACGAACCACA 59.552 57.895 0.00 0.00 33.49 4.17
2578 6586 4.373771 GTCCCCTTGACGAACCAC 57.626 61.111 0.00 0.00 33.49 4.16
2585 6593 2.009774 CAATGTGATCGTCCCCTTGAC 58.990 52.381 0.00 0.00 40.81 3.18
2586 6594 1.678728 GCAATGTGATCGTCCCCTTGA 60.679 52.381 0.00 0.00 0.00 3.02
2587 6595 0.734889 GCAATGTGATCGTCCCCTTG 59.265 55.000 0.00 0.00 0.00 3.61
2588 6596 0.327924 TGCAATGTGATCGTCCCCTT 59.672 50.000 0.00 0.00 0.00 3.95
2589 6597 0.392998 GTGCAATGTGATCGTCCCCT 60.393 55.000 0.00 0.00 0.00 4.79
2590 6598 0.676466 TGTGCAATGTGATCGTCCCC 60.676 55.000 0.00 0.00 0.00 4.81
2591 6599 1.164411 TTGTGCAATGTGATCGTCCC 58.836 50.000 0.00 0.00 0.00 4.46
2592 6600 2.483877 TCTTTGTGCAATGTGATCGTCC 59.516 45.455 0.00 0.00 0.00 4.79
2593 6601 3.740590 CTCTTTGTGCAATGTGATCGTC 58.259 45.455 0.00 0.00 0.00 4.20
2594 6602 2.095567 GCTCTTTGTGCAATGTGATCGT 60.096 45.455 0.00 0.00 0.00 3.73
2595 6603 2.095617 TGCTCTTTGTGCAATGTGATCG 60.096 45.455 0.00 0.00 37.51 3.69
2596 6604 3.189910 TCTGCTCTTTGTGCAATGTGATC 59.810 43.478 0.00 0.00 40.13 2.92
2597 6605 3.151554 TCTGCTCTTTGTGCAATGTGAT 58.848 40.909 0.00 0.00 40.13 3.06
2598 6606 2.574450 TCTGCTCTTTGTGCAATGTGA 58.426 42.857 0.00 0.00 40.13 3.58
2599 6607 3.358707 TTCTGCTCTTTGTGCAATGTG 57.641 42.857 0.00 0.00 40.13 3.21
2600 6608 3.382546 AGTTTCTGCTCTTTGTGCAATGT 59.617 39.130 0.00 0.00 40.13 2.71
2601 6609 3.734231 CAGTTTCTGCTCTTTGTGCAATG 59.266 43.478 0.00 0.00 40.13 2.82
2602 6610 3.973657 CAGTTTCTGCTCTTTGTGCAAT 58.026 40.909 0.00 0.00 40.13 3.56
2603 6611 3.425577 CAGTTTCTGCTCTTTGTGCAA 57.574 42.857 0.00 0.00 40.13 4.08
2640 6648 2.152016 GGGTAAAAGAGAGGTGTGCAC 58.848 52.381 10.75 10.75 0.00 4.57
2641 6649 1.771854 TGGGTAAAAGAGAGGTGTGCA 59.228 47.619 0.00 0.00 0.00 4.57
2642 6650 2.427506 CTGGGTAAAAGAGAGGTGTGC 58.572 52.381 0.00 0.00 0.00 4.57
2643 6651 2.372172 ACCTGGGTAAAAGAGAGGTGTG 59.628 50.000 0.00 0.00 35.65 3.82
2644 6652 2.702748 ACCTGGGTAAAAGAGAGGTGT 58.297 47.619 0.00 0.00 35.65 4.16
2645 6653 3.676093 GAACCTGGGTAAAAGAGAGGTG 58.324 50.000 0.00 0.00 37.12 4.00
2646 6654 2.302157 CGAACCTGGGTAAAAGAGAGGT 59.698 50.000 0.00 0.00 38.75 3.85
2647 6655 2.354805 CCGAACCTGGGTAAAAGAGAGG 60.355 54.545 0.00 0.00 0.00 3.69
2648 6656 2.354805 CCCGAACCTGGGTAAAAGAGAG 60.355 54.545 0.00 0.00 44.76 3.20
2649 6657 1.626825 CCCGAACCTGGGTAAAAGAGA 59.373 52.381 0.00 0.00 44.76 3.10
2650 6658 2.109425 CCCGAACCTGGGTAAAAGAG 57.891 55.000 0.00 0.00 44.76 2.85
2659 6667 2.115266 AAAGTGGCCCGAACCTGG 59.885 61.111 0.00 0.00 0.00 4.45
2660 6668 2.919494 GCAAAGTGGCCCGAACCTG 61.919 63.158 0.00 0.00 0.00 4.00
2661 6669 2.597510 GCAAAGTGGCCCGAACCT 60.598 61.111 0.00 0.00 0.00 3.50
2662 6670 2.909965 TGCAAAGTGGCCCGAACC 60.910 61.111 0.00 0.00 0.00 3.62
2663 6671 2.644992 CTGCAAAGTGGCCCGAAC 59.355 61.111 0.00 0.00 0.00 3.95
2664 6672 3.294493 GCTGCAAAGTGGCCCGAA 61.294 61.111 0.00 0.00 0.00 4.30
2667 6675 1.801309 TTTACGCTGCAAAGTGGCCC 61.801 55.000 0.00 0.00 0.00 5.80
2668 6676 0.031449 TTTTACGCTGCAAAGTGGCC 59.969 50.000 0.00 0.00 0.00 5.36
2669 6677 1.128513 GTTTTACGCTGCAAAGTGGC 58.871 50.000 0.00 0.00 0.00 5.01
2670 6678 1.601914 GGGTTTTACGCTGCAAAGTGG 60.602 52.381 0.00 0.00 0.00 4.00
2671 6679 1.336755 AGGGTTTTACGCTGCAAAGTG 59.663 47.619 0.00 0.00 40.09 3.16
2672 6680 1.687563 AGGGTTTTACGCTGCAAAGT 58.312 45.000 0.00 0.00 40.09 2.66
2673 6681 2.812011 AGTAGGGTTTTACGCTGCAAAG 59.188 45.455 12.81 0.00 44.05 2.77
2674 6682 2.809696 GAGTAGGGTTTTACGCTGCAAA 59.190 45.455 12.81 0.00 44.05 3.68
2675 6683 2.419667 GAGTAGGGTTTTACGCTGCAA 58.580 47.619 12.81 0.00 44.05 4.08
2676 6684 1.338389 GGAGTAGGGTTTTACGCTGCA 60.338 52.381 12.81 0.00 44.05 4.41
2677 6685 1.066358 AGGAGTAGGGTTTTACGCTGC 60.066 52.381 6.65 5.43 41.73 5.25
2678 6686 3.446516 AGTAGGAGTAGGGTTTTACGCTG 59.553 47.826 6.65 0.00 41.73 5.18
2679 6687 3.446516 CAGTAGGAGTAGGGTTTTACGCT 59.553 47.826 1.98 1.98 44.07 5.07
2680 6688 3.194329 ACAGTAGGAGTAGGGTTTTACGC 59.806 47.826 0.00 0.00 0.00 4.42
2681 6689 4.381292 CCACAGTAGGAGTAGGGTTTTACG 60.381 50.000 0.00 0.00 0.00 3.18
2682 6690 4.081254 CCCACAGTAGGAGTAGGGTTTTAC 60.081 50.000 0.00 0.00 0.00 2.01
2683 6691 4.098894 CCCACAGTAGGAGTAGGGTTTTA 58.901 47.826 0.00 0.00 0.00 1.52
2684 6692 2.910977 CCCACAGTAGGAGTAGGGTTTT 59.089 50.000 0.00 0.00 0.00 2.43
2685 6693 2.547990 CCCACAGTAGGAGTAGGGTTT 58.452 52.381 0.00 0.00 0.00 3.27
2686 6694 1.273666 CCCCACAGTAGGAGTAGGGTT 60.274 57.143 0.00 0.00 34.44 4.11
2687 6695 0.338814 CCCCACAGTAGGAGTAGGGT 59.661 60.000 0.00 0.00 34.44 4.34
2688 6696 0.635009 TCCCCACAGTAGGAGTAGGG 59.365 60.000 0.00 0.00 36.04 3.53
2689 6697 2.700897 CAATCCCCACAGTAGGAGTAGG 59.299 54.545 0.00 0.00 35.08 3.18
2690 6698 3.643237 TCAATCCCCACAGTAGGAGTAG 58.357 50.000 0.00 0.00 35.08 2.57
2691 6699 3.769189 TCAATCCCCACAGTAGGAGTA 57.231 47.619 0.00 0.00 35.08 2.59
2692 6700 2.642171 TCAATCCCCACAGTAGGAGT 57.358 50.000 0.00 0.00 35.08 3.85
2693 6701 3.070734 CAGATCAATCCCCACAGTAGGAG 59.929 52.174 0.00 0.00 35.08 3.69
2694 6702 3.041211 CAGATCAATCCCCACAGTAGGA 58.959 50.000 0.00 0.00 36.36 2.94
2695 6703 2.105477 CCAGATCAATCCCCACAGTAGG 59.895 54.545 0.00 0.00 0.00 3.18
2696 6704 3.041211 TCCAGATCAATCCCCACAGTAG 58.959 50.000 0.00 0.00 0.00 2.57
2697 6705 3.041211 CTCCAGATCAATCCCCACAGTA 58.959 50.000 0.00 0.00 0.00 2.74
2698 6706 1.842562 CTCCAGATCAATCCCCACAGT 59.157 52.381 0.00 0.00 0.00 3.55
2699 6707 1.142465 CCTCCAGATCAATCCCCACAG 59.858 57.143 0.00 0.00 0.00 3.66
2700 6708 1.216064 CCTCCAGATCAATCCCCACA 58.784 55.000 0.00 0.00 0.00 4.17
2701 6709 1.511613 TCCTCCAGATCAATCCCCAC 58.488 55.000 0.00 0.00 0.00 4.61
2702 6710 1.846439 GTTCCTCCAGATCAATCCCCA 59.154 52.381 0.00 0.00 0.00 4.96
2703 6711 1.202698 CGTTCCTCCAGATCAATCCCC 60.203 57.143 0.00 0.00 0.00 4.81
2704 6712 1.811941 GCGTTCCTCCAGATCAATCCC 60.812 57.143 0.00 0.00 0.00 3.85
2705 6713 1.587547 GCGTTCCTCCAGATCAATCC 58.412 55.000 0.00 0.00 0.00 3.01
2706 6714 1.202417 TCGCGTTCCTCCAGATCAATC 60.202 52.381 5.77 0.00 0.00 2.67
2707 6715 0.824109 TCGCGTTCCTCCAGATCAAT 59.176 50.000 5.77 0.00 0.00 2.57
2708 6716 0.606096 TTCGCGTTCCTCCAGATCAA 59.394 50.000 5.77 0.00 0.00 2.57
2709 6717 0.173481 CTTCGCGTTCCTCCAGATCA 59.827 55.000 5.77 0.00 0.00 2.92
2710 6718 0.456221 TCTTCGCGTTCCTCCAGATC 59.544 55.000 5.77 0.00 0.00 2.75
2711 6719 0.173708 GTCTTCGCGTTCCTCCAGAT 59.826 55.000 5.77 0.00 0.00 2.90
2712 6720 1.176619 TGTCTTCGCGTTCCTCCAGA 61.177 55.000 5.77 0.00 0.00 3.86
2713 6721 1.009389 GTGTCTTCGCGTTCCTCCAG 61.009 60.000 5.77 0.00 0.00 3.86
2714 6722 1.006571 GTGTCTTCGCGTTCCTCCA 60.007 57.895 5.77 0.00 0.00 3.86
2715 6723 2.087009 CGTGTCTTCGCGTTCCTCC 61.087 63.158 5.77 0.00 41.80 4.30
2716 6724 1.081641 TCGTGTCTTCGCGTTCCTC 60.082 57.895 5.77 0.00 46.03 3.71
2717 6725 1.371389 GTCGTGTCTTCGCGTTCCT 60.371 57.895 5.77 0.00 46.03 3.36
2718 6726 1.007336 ATGTCGTGTCTTCGCGTTCC 61.007 55.000 5.77 0.00 46.03 3.62
2719 6727 0.091344 CATGTCGTGTCTTCGCGTTC 59.909 55.000 5.77 0.00 46.03 3.95
2720 6728 1.886861 GCATGTCGTGTCTTCGCGTT 61.887 55.000 5.77 0.00 46.03 4.84
2721 6729 2.372690 GCATGTCGTGTCTTCGCGT 61.373 57.895 5.77 0.00 46.03 6.01
2723 6731 1.008875 TGAGCATGTCGTGTCTTCGC 61.009 55.000 0.00 0.00 0.00 4.70
2724 6732 1.388093 CTTGAGCATGTCGTGTCTTCG 59.612 52.381 0.00 0.00 0.00 3.79
2725 6733 1.127582 GCTTGAGCATGTCGTGTCTTC 59.872 52.381 0.00 0.00 41.59 2.87
2726 6734 1.151668 GCTTGAGCATGTCGTGTCTT 58.848 50.000 0.00 0.00 41.59 3.01
2727 6735 0.319728 AGCTTGAGCATGTCGTGTCT 59.680 50.000 5.70 0.00 45.16 3.41
2728 6736 0.718343 GAGCTTGAGCATGTCGTGTC 59.282 55.000 5.70 0.00 45.16 3.67
2729 6737 1.010935 CGAGCTTGAGCATGTCGTGT 61.011 55.000 5.70 0.00 45.16 4.49
2730 6738 1.690283 CCGAGCTTGAGCATGTCGTG 61.690 60.000 1.22 0.00 45.16 4.35
2731 6739 1.446792 CCGAGCTTGAGCATGTCGT 60.447 57.895 1.22 0.00 45.16 4.34
2732 6740 2.806856 GCCGAGCTTGAGCATGTCG 61.807 63.158 1.22 6.02 45.16 4.35
2733 6741 1.300971 TTGCCGAGCTTGAGCATGTC 61.301 55.000 15.28 0.00 45.16 3.06
2734 6742 1.302752 TTGCCGAGCTTGAGCATGT 60.303 52.632 15.28 0.00 45.16 3.21
2735 6743 1.428219 CTTGCCGAGCTTGAGCATG 59.572 57.895 15.28 13.86 45.16 4.06
2736 6744 1.748122 CCTTGCCGAGCTTGAGCAT 60.748 57.895 15.28 0.00 45.16 3.79
2737 6745 2.359107 CCTTGCCGAGCTTGAGCA 60.359 61.111 11.73 11.73 45.16 4.26
2738 6746 3.130160 CCCTTGCCGAGCTTGAGC 61.130 66.667 1.22 4.99 42.49 4.26
2739 6747 2.037136 CACCCTTGCCGAGCTTGAG 61.037 63.158 1.22 0.00 0.00 3.02
2740 6748 2.032528 CACCCTTGCCGAGCTTGA 59.967 61.111 1.22 0.00 0.00 3.02
2741 6749 3.741476 GCACCCTTGCCGAGCTTG 61.741 66.667 0.00 0.00 43.66 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.