Multiple sequence alignment - TraesCS2B01G350100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G350100 chr2B 100.000 2497 0 0 1 2497 496543388 496540892 0.000000e+00 4612.0
1 TraesCS2B01G350100 chr2B 88.449 606 47 14 1058 1651 496078717 496078123 0.000000e+00 710.0
2 TraesCS2B01G350100 chr2B 88.504 548 42 13 990 1535 496177194 496176666 0.000000e+00 643.0
3 TraesCS2B01G350100 chr2B 88.934 488 51 1 1069 1556 496359765 496359281 1.280000e-167 599.0
4 TraesCS2B01G350100 chr2B 82.310 684 73 32 990 1649 496351197 496350538 1.310000e-152 549.0
5 TraesCS2B01G350100 chr2B 85.941 505 48 15 990 1486 496355511 496355022 3.680000e-143 518.0
6 TraesCS2B01G350100 chr2B 85.743 505 49 15 990 1486 496353354 496352865 1.710000e-141 512.0
7 TraesCS2B01G350100 chr2B 81.097 693 80 33 975 1649 496512602 496511943 7.970000e-140 507.0
8 TraesCS2B01G350100 chr2B 81.801 544 39 22 4 529 496143596 496143095 3.870000e-108 401.0
9 TraesCS2B01G350100 chr2B 90.732 205 9 4 74 269 496358809 496358606 5.300000e-67 265.0
10 TraesCS2B01G350100 chr2B 88.050 159 15 2 450 608 496535480 496535326 4.240000e-43 185.0
11 TraesCS2B01G350100 chr2B 97.087 103 2 1 1532 1634 496176299 496176198 3.300000e-39 172.0
12 TraesCS2B01G350100 chr2B 87.037 108 12 2 812 917 496351408 496351301 1.210000e-23 121.0
13 TraesCS2B01G350100 chr2B 87.037 108 12 2 812 917 496353565 496353458 1.210000e-23 121.0
14 TraesCS2B01G350100 chr2B 87.037 108 12 2 812 917 496355722 496355615 1.210000e-23 121.0
15 TraesCS2B01G350100 chr2B 89.157 83 5 3 1562 1640 496117771 496117689 1.580000e-17 100.0
16 TraesCS2B01G350100 chr2B 79.375 160 11 10 670 827 496512900 496512761 2.640000e-15 93.5
17 TraesCS2B01G350100 chr2A 91.631 1625 83 26 74 1651 565233360 565234978 0.000000e+00 2198.0
18 TraesCS2B01G350100 chr2A 83.286 706 86 14 958 1651 565282872 565283557 2.730000e-174 621.0
19 TraesCS2B01G350100 chr2A 82.595 316 35 7 300 604 565280368 565280674 6.850000e-66 261.0
20 TraesCS2B01G350100 chr2A 92.771 166 8 1 108 269 565280207 565280372 1.150000e-58 237.0
21 TraesCS2B01G350100 chr2A 81.329 316 33 12 614 922 565282500 565282796 1.490000e-57 233.0
22 TraesCS2B01G350100 chr2A 85.340 191 13 12 670 851 565269933 565270117 1.530000e-42 183.0
23 TraesCS2B01G350100 chr2A 81.614 223 28 8 232 447 565242842 565243058 3.300000e-39 172.0
24 TraesCS2B01G350100 chr2A 88.235 136 15 1 447 581 565267421 565267556 7.150000e-36 161.0
25 TraesCS2B01G350100 chr2A 100.000 29 0 0 449 477 565243297 565243325 1.000000e-03 54.7
26 TraesCS2B01G350100 chr5A 97.877 848 18 0 1650 2497 552517833 552518680 0.000000e+00 1467.0
27 TraesCS2B01G350100 chr7B 97.762 849 19 0 1649 2497 540062094 540061246 0.000000e+00 1463.0
28 TraesCS2B01G350100 chr7B 95.882 850 32 3 1649 2497 88652156 88651309 0.000000e+00 1373.0
29 TraesCS2B01G350100 chr7B 95.863 846 32 3 1651 2495 497896295 497895452 0.000000e+00 1365.0
30 TraesCS2B01G350100 chr1B 97.644 849 18 2 1649 2497 22927565 22926719 0.000000e+00 1456.0
31 TraesCS2B01G350100 chr1B 97.048 847 25 0 1651 2497 622473891 622473045 0.000000e+00 1426.0
32 TraesCS2B01G350100 chr6B 97.529 850 20 1 1649 2497 500294693 500295542 0.000000e+00 1452.0
33 TraesCS2B01G350100 chr3A 97.529 850 18 2 1651 2497 9945013 9945862 0.000000e+00 1450.0
34 TraesCS2B01G350100 chr5B 94.966 874 36 8 1628 2497 78425098 78425967 0.000000e+00 1363.0
35 TraesCS2B01G350100 chr2D 94.509 692 32 2 959 1650 423347852 423347167 0.000000e+00 1062.0
36 TraesCS2B01G350100 chr2D 82.526 1053 108 42 614 1636 423292893 423291887 0.000000e+00 856.0
37 TraesCS2B01G350100 chr2D 92.781 471 13 5 4 457 423348986 423348520 0.000000e+00 662.0
38 TraesCS2B01G350100 chr2D 94.681 188 6 2 734 917 423348123 423347936 3.140000e-74 289.0
39 TraesCS2B01G350100 chr2D 85.833 240 8 7 449 687 423348341 423348127 5.370000e-57 231.0
40 TraesCS2B01G350100 chr2D 85.169 236 15 8 4 223 423303866 423303635 8.990000e-55 224.0
41 TraesCS2B01G350100 chr2D 96.552 58 2 0 212 269 423301760 423301703 2.040000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G350100 chr2B 496540892 496543388 2496 True 4612.00 4612 100.000000 1 2497 1 chr2B.!!$R5 2496
1 TraesCS2B01G350100 chr2B 496078123 496078717 594 True 710.00 710 88.449000 1058 1651 1 chr2B.!!$R1 593
2 TraesCS2B01G350100 chr2B 496176198 496177194 996 True 407.50 643 92.795500 990 1634 2 chr2B.!!$R6 644
3 TraesCS2B01G350100 chr2B 496143095 496143596 501 True 401.00 401 81.801000 4 529 1 chr2B.!!$R3 525
4 TraesCS2B01G350100 chr2B 496350538 496359765 9227 True 350.75 599 86.846375 74 1649 8 chr2B.!!$R7 1575
5 TraesCS2B01G350100 chr2B 496511943 496512900 957 True 300.25 507 80.236000 670 1649 2 chr2B.!!$R8 979
6 TraesCS2B01G350100 chr2A 565233360 565234978 1618 False 2198.00 2198 91.631000 74 1651 1 chr2A.!!$F1 1577
7 TraesCS2B01G350100 chr2A 565280207 565283557 3350 False 338.00 621 84.995250 108 1651 4 chr2A.!!$F4 1543
8 TraesCS2B01G350100 chr5A 552517833 552518680 847 False 1467.00 1467 97.877000 1650 2497 1 chr5A.!!$F1 847
9 TraesCS2B01G350100 chr7B 540061246 540062094 848 True 1463.00 1463 97.762000 1649 2497 1 chr7B.!!$R3 848
10 TraesCS2B01G350100 chr7B 88651309 88652156 847 True 1373.00 1373 95.882000 1649 2497 1 chr7B.!!$R1 848
11 TraesCS2B01G350100 chr7B 497895452 497896295 843 True 1365.00 1365 95.863000 1651 2495 1 chr7B.!!$R2 844
12 TraesCS2B01G350100 chr1B 22926719 22927565 846 True 1456.00 1456 97.644000 1649 2497 1 chr1B.!!$R1 848
13 TraesCS2B01G350100 chr1B 622473045 622473891 846 True 1426.00 1426 97.048000 1651 2497 1 chr1B.!!$R2 846
14 TraesCS2B01G350100 chr6B 500294693 500295542 849 False 1452.00 1452 97.529000 1649 2497 1 chr6B.!!$F1 848
15 TraesCS2B01G350100 chr3A 9945013 9945862 849 False 1450.00 1450 97.529000 1651 2497 1 chr3A.!!$F1 846
16 TraesCS2B01G350100 chr5B 78425098 78425967 869 False 1363.00 1363 94.966000 1628 2497 1 chr5B.!!$F1 869
17 TraesCS2B01G350100 chr2D 423291887 423292893 1006 True 856.00 856 82.526000 614 1636 1 chr2D.!!$R1 1022
18 TraesCS2B01G350100 chr2D 423347167 423348986 1819 True 561.00 1062 91.951000 4 1650 4 chr2D.!!$R3 1646

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
557 1701 0.03759 GTTCACACCACCTGGCCATA 59.962 55.0 5.51 0.0 39.32 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2398 10996 0.179009 CGGATGTCTCCATTGCCCAT 60.179 55.0 0.0 0.0 42.19 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.472861 CGTCTATGTCATGTTGATCGCC 59.527 50.000 0.00 0.00 0.00 5.54
230 1133 2.031120 CCCCTTTCAGCTTTGACAACA 58.969 47.619 0.00 0.00 0.00 3.33
245 1148 3.737266 TGACAACACGACGATTACTTTCC 59.263 43.478 0.00 0.00 0.00 3.13
275 1178 9.410556 GTTCAGTTGTTGAAAATAGCACAATAT 57.589 29.630 0.00 0.00 46.85 1.28
524 1643 3.770040 CATGGCGAGACCGGACCA 61.770 66.667 9.46 7.98 43.94 4.02
557 1701 0.037590 GTTCACACCACCTGGCCATA 59.962 55.000 5.51 0.00 39.32 2.74
558 1702 0.327924 TTCACACCACCTGGCCATAG 59.672 55.000 5.51 3.02 39.32 2.23
559 1703 0.546507 TCACACCACCTGGCCATAGA 60.547 55.000 5.51 0.00 39.32 1.98
560 1704 0.327924 CACACCACCTGGCCATAGAA 59.672 55.000 5.51 0.00 39.32 2.10
561 1705 1.072266 ACACCACCTGGCCATAGAAA 58.928 50.000 5.51 0.00 39.32 2.52
562 1706 1.640670 ACACCACCTGGCCATAGAAAT 59.359 47.619 5.51 0.00 39.32 2.17
563 1707 2.849943 ACACCACCTGGCCATAGAAATA 59.150 45.455 5.51 0.00 39.32 1.40
564 1708 3.117888 ACACCACCTGGCCATAGAAATAG 60.118 47.826 5.51 0.00 39.32 1.73
565 1709 2.443255 ACCACCTGGCCATAGAAATAGG 59.557 50.000 5.51 3.35 39.32 2.57
566 1710 2.224867 CCACCTGGCCATAGAAATAGGG 60.225 54.545 5.51 2.46 0.00 3.53
567 1711 1.425448 ACCTGGCCATAGAAATAGGGC 59.575 52.381 5.51 2.42 45.37 5.19
659 4426 5.278512 CGATCAGGAATATTCAACCGAGAGA 60.279 44.000 17.07 3.53 0.00 3.10
687 6595 2.268298 GATGAGGACGCGTTTACATGT 58.732 47.619 22.94 2.69 0.00 3.21
700 6608 5.175126 GCGTTTACATGTATGGCTAGTACAG 59.825 44.000 6.36 0.00 35.69 2.74
827 6747 3.056891 GCTCCTGATACTGACATAGCTCC 60.057 52.174 0.00 0.00 0.00 4.70
912 6840 4.401022 AGCCTTCACAAAATCATCACAGA 58.599 39.130 0.00 0.00 0.00 3.41
917 6845 6.402983 CCTTCACAAAATCATCACAGACTAGC 60.403 42.308 0.00 0.00 0.00 3.42
922 6850 7.009999 CACAAAATCATCACAGACTAGCTACTC 59.990 40.741 0.00 0.00 0.00 2.59
923 6851 6.782082 AAATCATCACAGACTAGCTACTCA 57.218 37.500 3.62 0.00 0.00 3.41
924 6852 6.782082 AATCATCACAGACTAGCTACTCAA 57.218 37.500 3.62 0.00 0.00 3.02
926 6854 5.955488 TCATCACAGACTAGCTACTCAAAC 58.045 41.667 3.62 0.00 0.00 2.93
928 6856 4.149598 TCACAGACTAGCTACTCAAACCA 58.850 43.478 3.62 0.00 0.00 3.67
929 6857 4.587262 TCACAGACTAGCTACTCAAACCAA 59.413 41.667 3.62 0.00 0.00 3.67
932 6860 5.482175 ACAGACTAGCTACTCAAACCAATCT 59.518 40.000 3.62 0.00 0.00 2.40
934 6862 7.147983 ACAGACTAGCTACTCAAACCAATCTAG 60.148 40.741 3.62 0.00 0.00 2.43
935 6863 5.908341 ACTAGCTACTCAAACCAATCTAGC 58.092 41.667 0.00 0.00 0.00 3.42
1011 7013 1.531423 CAGCAGCAATGAAGGTGAGT 58.469 50.000 0.00 0.00 39.26 3.41
1051 9206 5.560724 TGCTCCTAGCTAGTTTTTGTTGAT 58.439 37.500 19.31 0.00 42.97 2.57
1056 9211 8.099364 TCCTAGCTAGTTTTTGTTGATTTCTG 57.901 34.615 19.31 0.00 0.00 3.02
1102 9266 8.634475 TCAATTTTGAGTCATCGATACAGTAG 57.366 34.615 0.00 0.00 32.50 2.57
1108 9272 6.292150 TGAGTCATCGATACAGTAGTCTGAT 58.708 40.000 0.00 0.00 43.76 2.90
1113 9277 3.003793 TCGATACAGTAGTCTGATGCTGC 59.996 47.826 2.17 0.00 43.76 5.25
1321 9492 2.320587 CGGTGTGCCTTGTCTGCTC 61.321 63.158 0.00 0.00 0.00 4.26
1376 9547 3.458118 TCAAGGTGGAGGAAGTGAAGAAA 59.542 43.478 0.00 0.00 0.00 2.52
1472 9652 1.115930 CGCCCAGCTCCTACTACCAT 61.116 60.000 0.00 0.00 0.00 3.55
1519 9733 0.966179 TGTAACTGCCAGAGAGCGAA 59.034 50.000 0.00 0.00 34.65 4.70
1978 10573 0.105401 TGTCCCACCACTGGTAGACA 60.105 55.000 21.48 21.48 42.18 3.41
2246 10842 1.004161 TCCAAACCATGCGATCCAAGA 59.996 47.619 0.00 0.00 0.00 3.02
2274 10870 3.390639 AGAGTCATGCCTAGGAATTGAGG 59.609 47.826 14.75 0.00 35.78 3.86
2325 10923 1.164411 TCGTTCGCATGCTTCCAAAT 58.836 45.000 17.13 0.00 0.00 2.32
2353 10951 3.067106 GTCTTCGGTTTGCTCATGAAGA 58.933 45.455 0.00 0.00 41.84 2.87
2369 10967 4.137116 TGAAGATGGACGTCATTAAGGG 57.863 45.455 18.91 0.00 35.97 3.95
2404 11002 4.044308 TGAAGAACTCCCTAATATGGGCA 58.956 43.478 0.00 0.00 46.67 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.431912 TCAACATGACATAGACGTTGTGC 59.568 43.478 13.20 0.00 38.44 4.57
1 2 5.499176 CGATCAACATGACATAGACGTTGTG 60.499 44.000 13.20 0.00 38.44 3.33
2 3 4.562789 CGATCAACATGACATAGACGTTGT 59.437 41.667 13.20 0.00 38.44 3.32
230 1133 3.672767 ACCTTGGAAAGTAATCGTCGT 57.327 42.857 0.00 0.00 44.25 4.34
245 1148 6.198966 GTGCTATTTTCAACAACTGAACCTTG 59.801 38.462 0.00 0.00 43.90 3.61
275 1178 7.200778 TCGCCGTGTGTGTTTATATAGTATA 57.799 36.000 0.00 0.00 0.00 1.47
276 1179 6.075762 TCGCCGTGTGTGTTTATATAGTAT 57.924 37.500 0.00 0.00 0.00 2.12
277 1180 5.497635 TCGCCGTGTGTGTTTATATAGTA 57.502 39.130 0.00 0.00 0.00 1.82
278 1181 4.374843 TCGCCGTGTGTGTTTATATAGT 57.625 40.909 0.00 0.00 0.00 2.12
279 1182 6.021704 CGATATCGCCGTGTGTGTTTATATAG 60.022 42.308 12.95 0.00 0.00 1.31
280 1183 5.796437 CGATATCGCCGTGTGTGTTTATATA 59.204 40.000 12.95 0.00 0.00 0.86
281 1184 4.619760 CGATATCGCCGTGTGTGTTTATAT 59.380 41.667 12.95 0.00 0.00 0.86
336 1250 3.341857 TGCGCTTTTGTACATTTCGTT 57.658 38.095 9.73 0.00 0.00 3.85
524 1643 3.508762 GTGTGAACGATATCAACGACCT 58.491 45.455 3.12 0.00 34.70 3.85
557 1701 5.765510 TGATTTATGTGGTGCCCTATTTCT 58.234 37.500 0.00 0.00 0.00 2.52
558 1702 6.463995 TTGATTTATGTGGTGCCCTATTTC 57.536 37.500 0.00 0.00 0.00 2.17
559 1703 6.610830 TCATTGATTTATGTGGTGCCCTATTT 59.389 34.615 0.00 0.00 0.00 1.40
560 1704 6.135454 TCATTGATTTATGTGGTGCCCTATT 58.865 36.000 0.00 0.00 0.00 1.73
561 1705 5.704354 TCATTGATTTATGTGGTGCCCTAT 58.296 37.500 0.00 0.00 0.00 2.57
562 1706 5.122707 TCATTGATTTATGTGGTGCCCTA 57.877 39.130 0.00 0.00 0.00 3.53
563 1707 3.956199 CTCATTGATTTATGTGGTGCCCT 59.044 43.478 0.00 0.00 0.00 5.19
564 1708 3.068590 CCTCATTGATTTATGTGGTGCCC 59.931 47.826 0.00 0.00 35.46 5.36
565 1709 3.701040 ACCTCATTGATTTATGTGGTGCC 59.299 43.478 8.95 0.00 45.68 5.01
566 1710 4.641989 AGACCTCATTGATTTATGTGGTGC 59.358 41.667 13.29 6.97 46.74 5.01
567 1711 6.558009 CAAGACCTCATTGATTTATGTGGTG 58.442 40.000 13.29 0.00 46.74 4.17
569 1713 5.359009 AGCAAGACCTCATTGATTTATGTGG 59.641 40.000 0.00 0.00 42.26 4.17
570 1714 6.446781 AGCAAGACCTCATTGATTTATGTG 57.553 37.500 0.00 0.00 0.00 3.21
571 1715 8.579850 TTTAGCAAGACCTCATTGATTTATGT 57.420 30.769 0.00 0.00 0.00 2.29
572 1716 9.512435 CTTTTAGCAAGACCTCATTGATTTATG 57.488 33.333 0.00 0.00 0.00 1.90
573 1717 9.247861 ACTTTTAGCAAGACCTCATTGATTTAT 57.752 29.630 0.00 0.00 0.00 1.40
574 1718 8.635765 ACTTTTAGCAAGACCTCATTGATTTA 57.364 30.769 0.00 0.00 0.00 1.40
575 1719 7.530426 ACTTTTAGCAAGACCTCATTGATTT 57.470 32.000 0.00 0.00 0.00 2.17
576 1720 7.231317 TCAACTTTTAGCAAGACCTCATTGATT 59.769 33.333 0.00 0.00 0.00 2.57
577 1721 6.716628 TCAACTTTTAGCAAGACCTCATTGAT 59.283 34.615 0.00 0.00 0.00 2.57
578 1722 6.061441 TCAACTTTTAGCAAGACCTCATTGA 58.939 36.000 0.00 0.00 0.00 2.57
579 1723 6.317789 TCAACTTTTAGCAAGACCTCATTG 57.682 37.500 0.00 0.00 0.00 2.82
580 1724 7.885399 AGTATCAACTTTTAGCAAGACCTCATT 59.115 33.333 0.00 0.00 29.00 2.57
581 1725 7.398024 AGTATCAACTTTTAGCAAGACCTCAT 58.602 34.615 0.00 0.00 29.00 2.90
659 4426 3.179443 ACGCGTCCTCATCATAACAAT 57.821 42.857 5.58 0.00 0.00 2.71
687 6595 3.640029 GGGCAAGTACTGTACTAGCCATA 59.360 47.826 19.97 0.00 42.26 2.74
827 6747 1.374758 GTGTGGGAGCGGAGAAGTG 60.375 63.158 0.00 0.00 0.00 3.16
891 6819 4.217118 AGTCTGTGATGATTTTGTGAAGGC 59.783 41.667 0.00 0.00 0.00 4.35
912 6840 5.659079 AGCTAGATTGGTTTGAGTAGCTAGT 59.341 40.000 0.00 0.00 41.05 2.57
917 6845 5.069781 AGGCTAGCTAGATTGGTTTGAGTAG 59.930 44.000 25.15 0.00 0.00 2.57
922 6850 3.126831 CGAGGCTAGCTAGATTGGTTTG 58.873 50.000 25.15 2.78 0.00 2.93
923 6851 2.483889 GCGAGGCTAGCTAGATTGGTTT 60.484 50.000 25.15 0.72 0.00 3.27
924 6852 1.069358 GCGAGGCTAGCTAGATTGGTT 59.931 52.381 25.15 2.13 0.00 3.67
926 6854 0.965439 AGCGAGGCTAGCTAGATTGG 59.035 55.000 25.15 12.77 44.05 3.16
928 6856 0.878416 CGAGCGAGGCTAGCTAGATT 59.122 55.000 25.15 10.93 46.13 2.40
929 6857 0.035598 TCGAGCGAGGCTAGCTAGAT 59.964 55.000 23.96 11.71 46.13 1.98
932 6860 0.746923 TGTTCGAGCGAGGCTAGCTA 60.747 55.000 22.32 4.96 46.13 3.32
934 6862 1.874466 GTGTTCGAGCGAGGCTAGC 60.874 63.158 12.00 12.00 39.88 3.42
935 6863 1.583967 CGTGTTCGAGCGAGGCTAG 60.584 63.158 0.00 0.00 39.88 3.42
1011 7013 4.079253 GGAGCAGAAACTGAATTGGGTTA 58.921 43.478 2.81 0.00 32.44 2.85
1017 7019 4.566426 AGCTAGGAGCAGAAACTGAATT 57.434 40.909 0.64 0.00 45.56 2.17
1051 9206 3.242936 GCTAAACGAAGCAACACCAGAAA 60.243 43.478 0.00 0.00 42.30 2.52
1113 9277 3.461061 ACGATGGATCAGTTGTATGCTG 58.539 45.455 0.00 0.00 35.43 4.41
1190 9361 0.869730 GTGCTTTCGACCGGCTTTTA 59.130 50.000 0.00 0.00 0.00 1.52
1376 9547 1.077334 TCCTTCTTCTTCTCCTCCGGT 59.923 52.381 0.00 0.00 0.00 5.28
1519 9733 8.802267 TGCTGGCAAAATTAGAGTACTTAAAAT 58.198 29.630 0.00 0.00 0.00 1.82
1798 10393 1.667830 CGACGAGGCCAAGCTTTGA 60.668 57.895 5.01 0.00 0.00 2.69
1978 10573 1.137872 GATTGGCTCATGGACGACTCT 59.862 52.381 0.00 0.00 0.00 3.24
2246 10842 2.122768 CCTAGGCATGACTCTTTCCCT 58.877 52.381 2.95 0.00 0.00 4.20
2274 10870 3.876198 CGGCCACCGCATACAAGC 61.876 66.667 2.24 0.00 41.17 4.01
2325 10923 1.347707 AGCAAACCGAAGACCTCATCA 59.652 47.619 0.00 0.00 0.00 3.07
2353 10951 0.916086 TGCCCCTTAATGACGTCCAT 59.084 50.000 14.12 4.14 36.99 3.41
2369 10967 3.416156 AGTTCTTCACTCTTTGGATGCC 58.584 45.455 0.00 0.00 0.00 4.40
2398 10996 0.179009 CGGATGTCTCCATTGCCCAT 60.179 55.000 0.00 0.00 42.19 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.