Multiple sequence alignment - TraesCS2B01G348200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G348200 chr2B 100.000 5637 0 0 1 5637 494883203 494877567 0.000000e+00 10410.0
1 TraesCS2B01G348200 chr2D 95.462 1741 66 7 3192 4925 422326989 422325255 0.000000e+00 2765.0
2 TraesCS2B01G348200 chr2D 92.463 1937 96 18 1252 3143 422328936 422327005 0.000000e+00 2723.0
3 TraesCS2B01G348200 chr2D 89.474 1159 60 27 13 1126 422330082 422328941 0.000000e+00 1408.0
4 TraesCS2B01G348200 chr2D 80.466 558 52 26 5107 5637 422325219 422324692 1.920000e-99 374.0
5 TraesCS2B01G348200 chr2D 94.656 131 7 0 1124 1254 450745635 450745505 2.660000e-48 204.0
6 TraesCS2B01G348200 chr2D 97.727 44 1 0 3103 3146 607675860 607675817 6.060000e-10 76.8
7 TraesCS2B01G348200 chr2D 97.674 43 1 0 3104 3146 629474317 629474359 2.180000e-09 75.0
8 TraesCS2B01G348200 chr2D 100.000 29 0 0 5002 5030 608530537 608530509 3.000000e-03 54.7
9 TraesCS2B01G348200 chr2A 92.500 1720 81 16 1429 3105 568582522 568580808 0.000000e+00 2418.0
10 TraesCS2B01G348200 chr2A 90.771 1712 110 19 3251 4925 568580810 568579110 0.000000e+00 2242.0
11 TraesCS2B01G348200 chr2A 89.608 1174 51 21 1 1126 568583910 568582760 0.000000e+00 1426.0
12 TraesCS2B01G348200 chr2A 80.107 563 54 35 5107 5637 568579074 568578538 3.210000e-97 366.0
13 TraesCS2B01G348200 chr2A 94.964 139 6 1 1122 1259 194169673 194169811 3.420000e-52 217.0
14 TraesCS2B01G348200 chr2A 91.667 72 5 1 4915 4986 194162188 194162118 1.290000e-16 99.0
15 TraesCS2B01G348200 chr3A 92.754 207 15 0 2244 2450 723749982 723750188 3.300000e-77 300.0
16 TraesCS2B01G348200 chr3A 98.462 130 2 0 1122 1251 75414839 75414968 4.390000e-56 230.0
17 TraesCS2B01G348200 chr3A 92.958 142 10 0 1124 1265 481867658 481867517 2.060000e-49 207.0
18 TraesCS2B01G348200 chr3A 88.312 77 8 1 4987 5062 663444642 663444718 2.160000e-14 91.6
19 TraesCS2B01G348200 chr5A 97.080 137 2 2 1124 1260 619475002 619474868 4.390000e-56 230.0
20 TraesCS2B01G348200 chr5A 100.000 48 0 0 3148 3195 451721597 451721644 7.780000e-14 89.8
21 TraesCS2B01G348200 chr5A 90.323 62 5 1 3197 3257 294244960 294245021 4.680000e-11 80.5
22 TraesCS2B01G348200 chr5A 93.750 48 1 2 3093 3139 40877883 40877929 2.820000e-08 71.3
23 TraesCS2B01G348200 chr1B 98.438 128 2 0 1124 1251 29412677 29412550 5.680000e-55 226.0
24 TraesCS2B01G348200 chr1B 94.245 139 8 0 1122 1260 551008836 551008974 4.420000e-51 213.0
25 TraesCS2B01G348200 chr1B 93.939 66 2 1 4923 4986 80410464 80410399 1.290000e-16 99.0
26 TraesCS2B01G348200 chr4A 94.891 137 7 0 1114 1250 477881892 477881756 1.230000e-51 215.0
27 TraesCS2B01G348200 chr1D 93.151 146 9 1 1122 1266 178459510 178459655 4.420000e-51 213.0
28 TraesCS2B01G348200 chr1D 94.118 68 2 2 4920 4986 436709481 436709415 9.990000e-18 102.0
29 TraesCS2B01G348200 chr7B 94.118 68 3 1 4919 4986 612224438 612224372 9.990000e-18 102.0
30 TraesCS2B01G348200 chr7B 93.939 66 2 1 4923 4986 575815959 575815894 1.290000e-16 99.0
31 TraesCS2B01G348200 chr5D 95.312 64 2 1 4923 4986 76234132 76234070 3.590000e-17 100.0
32 TraesCS2B01G348200 chr5D 90.323 62 5 1 3197 3257 220189622 220189683 4.680000e-11 80.5
33 TraesCS2B01G348200 chr5D 100.000 42 0 0 3101 3142 582638 582597 1.680000e-10 78.7
34 TraesCS2B01G348200 chr5D 97.674 43 1 0 3101 3143 311311801 311311843 2.180000e-09 75.0
35 TraesCS2B01G348200 chr6B 93.939 66 2 1 4923 4986 241356497 241356562 1.290000e-16 99.0
36 TraesCS2B01G348200 chr3B 92.754 69 3 2 4919 4986 255294261 255294328 1.290000e-16 99.0
37 TraesCS2B01G348200 chr3B 93.846 65 3 1 4922 4986 61103242 61103179 4.650000e-16 97.1
38 TraesCS2B01G348200 chr7D 94.545 55 3 0 3197 3251 41916899 41916845 1.010000e-12 86.1
39 TraesCS2B01G348200 chr7D 96.154 52 2 0 3197 3248 42212736 42212787 1.010000e-12 86.1
40 TraesCS2B01G348200 chr6D 94.643 56 2 1 3194 3248 58002511 58002566 1.010000e-12 86.1
41 TraesCS2B01G348200 chr4B 91.935 62 3 2 3197 3256 482662729 482662668 1.010000e-12 86.1
42 TraesCS2B01G348200 chr4B 87.692 65 7 1 3199 3262 9949456 9949520 2.180000e-09 75.0
43 TraesCS2B01G348200 chr4D 90.323 62 4 2 3197 3256 392745261 392745200 4.680000e-11 80.5
44 TraesCS2B01G348200 chr5B 95.833 48 1 1 3096 3143 357107882 357107928 6.060000e-10 76.8
45 TraesCS2B01G348200 chr5B 92.000 50 4 0 3097 3146 374429422 374429373 2.820000e-08 71.3
46 TraesCS2B01G348200 chr1A 91.071 56 5 0 4982 5037 513933190 513933135 6.060000e-10 76.8
47 TraesCS2B01G348200 chr7A 100.000 40 0 0 3104 3143 486925671 486925710 2.180000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G348200 chr2B 494877567 494883203 5636 True 10410.0 10410 100.00000 1 5637 1 chr2B.!!$R1 5636
1 TraesCS2B01G348200 chr2D 422324692 422330082 5390 True 1817.5 2765 89.46625 13 5637 4 chr2D.!!$R4 5624
2 TraesCS2B01G348200 chr2A 568578538 568583910 5372 True 1613.0 2418 88.24650 1 5637 4 chr2A.!!$R2 5636

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
408 430 0.039074 CCGTCGCTCTTGTCTCTGTT 60.039 55.0 0.00 0.00 0.00 3.16 F
1142 1202 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.0 5.23 0.00 44.66 2.17 F
1145 1205 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.0 5.23 0.00 44.66 2.12 F
2590 2756 0.252479 AGGGAGTGCTTGCTGATCAG 59.748 55.0 18.84 18.84 0.00 2.90 F
2595 2761 0.450983 GTGCTTGCTGATCAGAAGGC 59.549 55.0 27.01 27.01 0.00 4.35 F
3666 3836 1.064825 ACCCCTTTATCGCCTATGGG 58.935 55.0 0.00 0.00 37.58 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1233 1293 0.033796 ATGTACTCCCTCCGTCCGAA 60.034 55.000 0.00 0.00 0.00 4.30 R
3102 3268 0.187851 ATTCCGGACGGAGGGAGTAT 59.812 55.000 13.64 0.61 46.06 2.12 R
3113 3279 3.921677 TCTGTGACAAGTAATTCCGGAC 58.078 45.455 1.83 0.00 0.00 4.79 R
4380 4577 0.166814 GAGAAGTGTTGCCGATGTGC 59.833 55.000 0.00 0.00 0.00 4.57 R
4404 4601 0.179137 TTGTCGTGCTGCTATCCGAG 60.179 55.000 0.00 0.00 0.00 4.63 R
5049 5254 0.035439 ACTACATGTCAAAGCCGGGG 60.035 55.000 0.00 0.00 0.00 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
126 137 2.563179 CTGGATTGGTAGGAGGGATACG 59.437 54.545 0.00 0.00 37.60 3.06
189 200 1.400371 CGGCGTATCATCGAGGAGAAG 60.400 57.143 5.80 4.43 0.00 2.85
253 264 1.670087 CCGCTACTATTCATCGCCCTG 60.670 57.143 0.00 0.00 0.00 4.45
257 268 2.645838 ACTATTCATCGCCCTGCAAT 57.354 45.000 0.00 0.00 0.00 3.56
258 269 3.769739 ACTATTCATCGCCCTGCAATA 57.230 42.857 0.00 0.00 0.00 1.90
259 270 3.403038 ACTATTCATCGCCCTGCAATAC 58.597 45.455 0.00 0.00 0.00 1.89
310 323 2.662070 TAGTTACTGCGGTGGGGGC 61.662 63.158 8.92 0.00 0.00 5.80
337 359 1.664151 GTGCTGTCCTGCGTATTTACC 59.336 52.381 0.00 0.00 35.36 2.85
342 364 4.751060 CTGTCCTGCGTATTTACCACTAA 58.249 43.478 0.00 0.00 0.00 2.24
345 367 4.748600 GTCCTGCGTATTTACCACTAATCC 59.251 45.833 0.00 0.00 0.00 3.01
346 368 4.406326 TCCTGCGTATTTACCACTAATCCA 59.594 41.667 0.00 0.00 0.00 3.41
347 369 4.510340 CCTGCGTATTTACCACTAATCCAC 59.490 45.833 0.00 0.00 0.00 4.02
348 370 5.347620 TGCGTATTTACCACTAATCCACT 57.652 39.130 0.00 0.00 0.00 4.00
349 371 5.353938 TGCGTATTTACCACTAATCCACTC 58.646 41.667 0.00 0.00 0.00 3.51
350 372 5.128171 TGCGTATTTACCACTAATCCACTCT 59.872 40.000 0.00 0.00 0.00 3.24
351 373 5.690857 GCGTATTTACCACTAATCCACTCTC 59.309 44.000 0.00 0.00 0.00 3.20
381 403 2.951745 CCGACGACGCATCAGAGC 60.952 66.667 0.64 0.00 38.29 4.09
384 406 1.073216 CGACGACGCATCAGAGCTTT 61.073 55.000 0.00 0.00 0.00 3.51
387 409 1.284657 CGACGCATCAGAGCTTTCAT 58.715 50.000 0.00 0.00 0.00 2.57
405 427 1.599606 ATGCCGTCGCTCTTGTCTCT 61.600 55.000 0.00 0.00 35.36 3.10
407 429 1.581954 CCGTCGCTCTTGTCTCTGT 59.418 57.895 0.00 0.00 0.00 3.41
408 430 0.039074 CCGTCGCTCTTGTCTCTGTT 60.039 55.000 0.00 0.00 0.00 3.16
455 477 1.446272 CGTTTCGTGAGAGGGAGGC 60.446 63.158 0.00 0.00 43.69 4.70
492 514 0.532573 TCTCGACTTGTGATCCAGGC 59.467 55.000 0.00 0.00 0.00 4.85
496 518 1.066573 CGACTTGTGATCCAGGCTTCT 60.067 52.381 0.00 0.00 0.00 2.85
556 587 5.066117 ACTTTGTTCTTTTCTCTTTCCCGTC 59.934 40.000 0.00 0.00 0.00 4.79
566 597 2.837371 CTTTCCCGTCCGTCTCTGCC 62.837 65.000 0.00 0.00 0.00 4.85
663 696 3.508845 TTTCTGTCCCTCCTCTTTTGG 57.491 47.619 0.00 0.00 0.00 3.28
670 703 0.744771 CCTCCTCTTTTGGCCGTAGC 60.745 60.000 0.00 0.00 38.76 3.58
757 794 1.001815 ACCAACGAAATCCACAAAGCG 60.002 47.619 0.00 0.00 0.00 4.68
783 820 3.733337 GTCTGTCTGCGGATAAATGGAT 58.267 45.455 0.00 0.00 31.86 3.41
843 887 1.623311 TGTTTTCTCCGATCTGCTCCA 59.377 47.619 0.00 0.00 0.00 3.86
844 888 2.038426 TGTTTTCTCCGATCTGCTCCAA 59.962 45.455 0.00 0.00 0.00 3.53
848 892 0.813210 CTCCGATCTGCTCCAAAGGC 60.813 60.000 0.00 0.00 0.00 4.35
916 970 8.926715 ACTTGTGGATCTTACTTTTGTTTTTC 57.073 30.769 0.00 0.00 0.00 2.29
991 1048 0.179081 GGCCTTGACGAGATACACCC 60.179 60.000 0.00 0.00 0.00 4.61
1060 1120 5.521735 CCTCTTCCATCAATCTTCTTGTACG 59.478 44.000 0.00 0.00 0.00 3.67
1119 1179 6.995971 GCACTCGCTTATCTGCAAGAAATAAG 60.996 42.308 10.95 10.95 40.62 1.73
1128 1188 5.178797 TCTGCAAGAAATAAGCTGTACTCC 58.821 41.667 0.00 0.00 42.31 3.85
1129 1189 4.261801 TGCAAGAAATAAGCTGTACTCCC 58.738 43.478 0.00 0.00 0.00 4.30
1130 1190 4.019321 TGCAAGAAATAAGCTGTACTCCCT 60.019 41.667 0.00 0.00 0.00 4.20
1131 1191 4.572795 GCAAGAAATAAGCTGTACTCCCTC 59.427 45.833 0.00 0.00 0.00 4.30
1132 1192 5.119694 CAAGAAATAAGCTGTACTCCCTCC 58.880 45.833 0.00 0.00 0.00 4.30
1133 1193 3.385111 AGAAATAAGCTGTACTCCCTCCG 59.615 47.826 0.00 0.00 0.00 4.63
1134 1194 2.456073 ATAAGCTGTACTCCCTCCGT 57.544 50.000 0.00 0.00 0.00 4.69
1135 1195 1.760192 TAAGCTGTACTCCCTCCGTC 58.240 55.000 0.00 0.00 0.00 4.79
1136 1196 0.971447 AAGCTGTACTCCCTCCGTCC 60.971 60.000 0.00 0.00 0.00 4.79
1137 1197 2.772691 GCTGTACTCCCTCCGTCCG 61.773 68.421 0.00 0.00 0.00 4.79
1138 1198 2.044650 TGTACTCCCTCCGTCCGG 60.045 66.667 0.00 0.00 0.00 5.14
1139 1199 2.273449 GTACTCCCTCCGTCCGGA 59.727 66.667 0.00 0.00 42.90 5.14
1140 1200 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
1141 1201 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
1142 1202 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
1143 1203 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
1144 1204 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
1145 1205 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
1146 1206 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
1147 1207 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
1148 1208 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
1149 1209 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
1150 1210 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
1151 1211 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
1152 1212 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
1153 1213 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
1154 1214 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
1155 1215 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
1156 1216 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
1157 1217 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
1158 1218 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
1159 1219 6.657117 TCCGGAAATACTTGTCATCAAAATGA 59.343 34.615 0.00 0.00 39.63 2.57
1160 1220 7.175816 TCCGGAAATACTTGTCATCAAAATGAA 59.824 33.333 0.00 0.00 43.42 2.57
1161 1221 7.975616 CCGGAAATACTTGTCATCAAAATGAAT 59.024 33.333 0.00 0.00 43.42 2.57
1168 1228 8.538409 ACTTGTCATCAAAATGAATAAAAGGC 57.462 30.769 0.00 0.00 43.42 4.35
1169 1229 7.329226 ACTTGTCATCAAAATGAATAAAAGGCG 59.671 33.333 0.00 0.00 43.42 5.52
1170 1230 6.098679 TGTCATCAAAATGAATAAAAGGCGG 58.901 36.000 0.00 0.00 43.42 6.13
1171 1231 6.099341 GTCATCAAAATGAATAAAAGGCGGT 58.901 36.000 0.00 0.00 43.42 5.68
1172 1232 6.034898 GTCATCAAAATGAATAAAAGGCGGTG 59.965 38.462 0.00 0.00 43.42 4.94
1173 1233 5.461032 TCAAAATGAATAAAAGGCGGTGT 57.539 34.783 0.00 0.00 0.00 4.16
1174 1234 6.576662 TCAAAATGAATAAAAGGCGGTGTA 57.423 33.333 0.00 0.00 0.00 2.90
1175 1235 7.164230 TCAAAATGAATAAAAGGCGGTGTAT 57.836 32.000 0.00 0.00 0.00 2.29
1176 1236 7.254852 TCAAAATGAATAAAAGGCGGTGTATC 58.745 34.615 0.00 0.00 0.00 2.24
1177 1237 7.122055 TCAAAATGAATAAAAGGCGGTGTATCT 59.878 33.333 0.00 0.00 0.00 1.98
1178 1238 8.402472 CAAAATGAATAAAAGGCGGTGTATCTA 58.598 33.333 0.00 0.00 0.00 1.98
1179 1239 7.730364 AATGAATAAAAGGCGGTGTATCTAG 57.270 36.000 0.00 0.00 0.00 2.43
1180 1240 6.474140 TGAATAAAAGGCGGTGTATCTAGA 57.526 37.500 0.00 0.00 0.00 2.43
1181 1241 6.278363 TGAATAAAAGGCGGTGTATCTAGAC 58.722 40.000 0.00 0.00 0.00 2.59
1182 1242 6.097839 TGAATAAAAGGCGGTGTATCTAGACT 59.902 38.462 0.00 0.00 0.00 3.24
1183 1243 4.820894 AAAAGGCGGTGTATCTAGACTT 57.179 40.909 0.00 0.00 0.00 3.01
1184 1244 5.927281 AAAAGGCGGTGTATCTAGACTTA 57.073 39.130 0.00 0.00 0.00 2.24
1185 1245 6.481434 AAAAGGCGGTGTATCTAGACTTAT 57.519 37.500 0.00 0.00 0.00 1.73
1186 1246 6.481434 AAAGGCGGTGTATCTAGACTTATT 57.519 37.500 0.00 0.00 0.00 1.40
1187 1247 6.481434 AAGGCGGTGTATCTAGACTTATTT 57.519 37.500 0.00 0.00 0.00 1.40
1188 1248 6.481434 AGGCGGTGTATCTAGACTTATTTT 57.519 37.500 0.00 0.00 0.00 1.82
1189 1249 7.592885 AGGCGGTGTATCTAGACTTATTTTA 57.407 36.000 0.00 0.00 0.00 1.52
1190 1250 7.659186 AGGCGGTGTATCTAGACTTATTTTAG 58.341 38.462 0.00 0.00 0.00 1.85
1191 1251 7.287235 AGGCGGTGTATCTAGACTTATTTTAGT 59.713 37.037 0.00 0.00 0.00 2.24
1192 1252 7.924947 GGCGGTGTATCTAGACTTATTTTAGTT 59.075 37.037 0.00 0.00 0.00 2.24
1193 1253 8.966194 GCGGTGTATCTAGACTTATTTTAGTTC 58.034 37.037 0.00 0.00 0.00 3.01
1225 1285 9.657419 ACATCCCTTTTTATTCATTTTGATGAC 57.343 29.630 0.00 0.00 32.39 3.06
1226 1286 9.656040 CATCCCTTTTTATTCATTTTGATGACA 57.344 29.630 0.00 0.00 0.00 3.58
1228 1288 9.709495 TCCCTTTTTATTCATTTTGATGACAAG 57.291 29.630 0.00 0.00 37.32 3.16
1229 1289 9.492973 CCCTTTTTATTCATTTTGATGACAAGT 57.507 29.630 0.00 0.00 37.32 3.16
1237 1297 8.741101 TTCATTTTGATGACAAGTATTTTCGG 57.259 30.769 0.00 0.00 37.32 4.30
1238 1298 8.105097 TCATTTTGATGACAAGTATTTTCGGA 57.895 30.769 0.00 0.00 37.32 4.55
1239 1299 8.020819 TCATTTTGATGACAAGTATTTTCGGAC 58.979 33.333 0.00 0.00 37.32 4.79
1240 1300 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
1241 1301 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
1242 1302 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
1243 1303 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
1244 1304 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
1245 1305 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
1246 1306 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
1247 1307 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
1248 1308 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
1249 1309 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
1250 1310 0.890683 TTTTCGGACGGAGGGAGTAC 59.109 55.000 0.00 0.00 0.00 2.73
1261 1321 5.071370 ACGGAGGGAGTACATTCTAGTATG 58.929 45.833 7.73 7.73 0.00 2.39
1263 1323 5.535406 CGGAGGGAGTACATTCTAGTATGTT 59.465 44.000 18.64 3.61 39.39 2.71
1310 1394 3.637998 ATGCTTTGAACTGCAGTCTTG 57.362 42.857 21.95 10.04 42.74 3.02
1314 1398 3.688272 CTTTGAACTGCAGTCTTGTGTG 58.312 45.455 21.95 3.95 0.00 3.82
1320 1404 1.003116 CTGCAGTCTTGTGTGTTCAGC 60.003 52.381 5.25 0.00 0.00 4.26
1344 1435 4.926860 TTCTCGTTGAACACTGCATATG 57.073 40.909 0.00 0.00 0.00 1.78
1536 1658 5.119898 GCATATACTGACTGATAGCTTGTGC 59.880 44.000 0.00 0.00 40.05 4.57
1572 1694 8.642432 CCATAGATCTCACTTTGTTACTCCATA 58.358 37.037 0.00 0.00 0.00 2.74
1587 1709 9.926158 TGTTACTCCATAAATACAAGTAAACGA 57.074 29.630 0.00 0.00 35.03 3.85
1685 1830 7.659390 CCATAGAGAAGGTTTCATCTTGTATCC 59.341 40.741 0.00 0.00 0.00 2.59
1692 1837 9.143631 GAAGGTTTCATCTTGTATCCATTTTTG 57.856 33.333 0.00 0.00 0.00 2.44
1777 1922 2.777692 AGTTGAAGAGGACCTGAACCAA 59.222 45.455 0.00 0.00 0.00 3.67
1879 2035 3.213506 TGGTTGGAAGATGTCAAGTGTG 58.786 45.455 0.00 0.00 0.00 3.82
2230 2395 4.222886 TGTGTTCGTTTTTGTTCACACTG 58.777 39.130 0.00 0.00 36.35 3.66
2297 2463 4.941713 TGAAAGGCCTTACCATACCAATT 58.058 39.130 20.84 0.00 43.14 2.32
2463 2629 5.073965 AGGGAGGTAAAACCAGACAAATACA 59.926 40.000 0.00 0.00 41.95 2.29
2467 2633 7.393515 GGAGGTAAAACCAGACAAATACAGATT 59.606 37.037 0.00 0.00 41.95 2.40
2505 2671 5.375773 TGACAAGGATGTTGTTGAGATCAA 58.624 37.500 0.00 0.00 40.74 2.57
2569 2735 3.076621 TGTCAAGGATGTCTGCATTGAC 58.923 45.455 16.49 16.49 39.23 3.18
2590 2756 0.252479 AGGGAGTGCTTGCTGATCAG 59.748 55.000 18.84 18.84 0.00 2.90
2595 2761 0.450983 GTGCTTGCTGATCAGAAGGC 59.549 55.000 27.01 27.01 0.00 4.35
2599 2765 1.664659 CTTGCTGATCAGAAGGCTTCG 59.335 52.381 27.04 15.49 34.02 3.79
2626 2792 7.525029 GCAGAGAAGGTAGTAAGTGAAAAGGTA 60.525 40.741 0.00 0.00 0.00 3.08
2681 2847 3.533606 ATGGTGATCTGAAGGAAGACG 57.466 47.619 0.00 0.00 0.00 4.18
2687 2853 5.096849 GTGATCTGAAGGAAGACGTAAGAC 58.903 45.833 0.00 0.00 43.62 3.01
2708 2874 3.953612 ACTTGATCCTGTGAAAACTGCAA 59.046 39.130 0.00 0.00 0.00 4.08
2787 2953 4.394610 GGAAGAAACAAGAGCTGATCCTTC 59.605 45.833 0.00 0.00 0.00 3.46
2811 2977 6.483307 TCGAAAACTGAACATGAATCAGAGTT 59.517 34.615 27.97 21.94 45.74 3.01
2840 3006 5.249780 TGTTACCCTACATGTTCCATGTT 57.750 39.130 14.40 0.62 33.76 2.71
2844 3010 5.975988 ACCCTACATGTTCCATGTTCTAT 57.024 39.130 14.40 0.00 33.76 1.98
2897 3063 2.661504 CGAAGCACGTGATGTTGAAA 57.338 45.000 22.23 0.00 37.22 2.69
3018 3184 4.081087 GGGCACAGTAATTTCTGAGACCTA 60.081 45.833 21.89 0.00 46.05 3.08
3069 3235 6.072618 GGAGAAGCAATTGATGAGGTATGATG 60.073 42.308 10.34 0.00 0.00 3.07
3096 3262 9.982651 GATTTACAGTATTACCAATCTGCTCTA 57.017 33.333 0.00 0.00 0.00 2.43
3099 3265 9.764363 TTACAGTATTACCAATCTGCTCTAATG 57.236 33.333 0.00 0.00 0.00 1.90
3102 3268 9.330063 CAGTATTACCAATCTGCTCTAATGAAA 57.670 33.333 0.00 0.00 0.00 2.69
3113 3279 4.039245 TGCTCTAATGAAATACTCCCTCCG 59.961 45.833 0.00 0.00 0.00 4.63
3117 3283 1.108776 TGAAATACTCCCTCCGTCCG 58.891 55.000 0.00 0.00 0.00 4.79
3130 3296 1.894466 TCCGTCCGGAATTACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
3143 3309 5.627499 TTACTTGTCACAGAAATGGATGC 57.373 39.130 0.00 0.00 0.00 3.91
3145 3311 4.084287 ACTTGTCACAGAAATGGATGCAT 58.916 39.130 0.00 0.00 0.00 3.96
3146 3312 4.525487 ACTTGTCACAGAAATGGATGCATT 59.475 37.500 6.63 6.63 0.00 3.56
3148 3314 5.471556 TGTCACAGAAATGGATGCATTTT 57.528 34.783 23.81 12.48 35.18 1.82
3149 3315 5.856156 TGTCACAGAAATGGATGCATTTTT 58.144 33.333 23.81 16.80 35.18 1.94
3169 3335 5.925189 TTTTTCGAGAAAACGCAAAAGAG 57.075 34.783 10.18 0.00 39.70 2.85
3170 3336 4.609691 TTTCGAGAAAACGCAAAAGAGT 57.390 36.364 0.00 0.00 0.00 3.24
3171 3337 4.609691 TTCGAGAAAACGCAAAAGAGTT 57.390 36.364 0.00 0.00 0.00 3.01
3172 3338 3.935450 TCGAGAAAACGCAAAAGAGTTG 58.065 40.909 0.00 0.00 0.00 3.16
3173 3339 2.464016 CGAGAAAACGCAAAAGAGTTGC 59.536 45.455 0.93 0.93 41.71 4.17
3174 3340 3.434637 GAGAAAACGCAAAAGAGTTGCA 58.565 40.909 11.27 0.00 45.14 4.08
3175 3341 4.044426 GAGAAAACGCAAAAGAGTTGCAT 58.956 39.130 11.27 0.00 45.14 3.96
3176 3342 4.432712 AGAAAACGCAAAAGAGTTGCATT 58.567 34.783 11.27 0.00 45.14 3.56
3177 3343 4.869861 AGAAAACGCAAAAGAGTTGCATTT 59.130 33.333 11.27 10.56 41.68 2.32
3178 3344 4.777140 AAACGCAAAAGAGTTGCATTTC 57.223 36.364 11.27 0.00 45.14 2.17
3179 3345 3.435105 ACGCAAAAGAGTTGCATTTCA 57.565 38.095 11.27 0.00 45.14 2.69
3180 3346 3.981211 ACGCAAAAGAGTTGCATTTCAT 58.019 36.364 11.27 0.00 45.14 2.57
3181 3347 4.370917 ACGCAAAAGAGTTGCATTTCATT 58.629 34.783 11.27 0.00 45.14 2.57
3182 3348 4.209703 ACGCAAAAGAGTTGCATTTCATTG 59.790 37.500 11.27 0.19 45.14 2.82
3183 3349 4.460505 GCAAAAGAGTTGCATTTCATTGC 58.539 39.130 17.42 17.42 44.34 3.56
3195 3361 4.873827 GCATTTCATTGCATTGAACAGGAT 59.126 37.500 20.57 10.79 42.31 3.24
3199 3365 8.937884 CATTTCATTGCATTGAACAGGATTAAA 58.062 29.630 20.57 6.34 35.42 1.52
3205 3371 8.459521 TTGCATTGAACAGGATTAAAAATACG 57.540 30.769 0.00 0.00 0.00 3.06
3253 3419 6.837568 ACAAGTAATTAGGGACGGAGAGATAA 59.162 38.462 0.00 0.00 0.00 1.75
3350 3520 7.807433 TGTTTCAATGATATGTTCCAAGAAACG 59.193 33.333 0.00 0.00 40.36 3.60
3491 3661 5.155278 TCATTACAGGTTACACCAATCGT 57.845 39.130 0.00 0.00 41.95 3.73
3589 3759 2.559440 GGCTCTCAGCTGTAATTCCTG 58.441 52.381 14.67 0.00 41.99 3.86
3590 3760 2.169352 GGCTCTCAGCTGTAATTCCTGA 59.831 50.000 14.67 0.00 41.99 3.86
3591 3761 3.369892 GGCTCTCAGCTGTAATTCCTGAA 60.370 47.826 14.67 0.00 41.99 3.02
3651 3821 3.573695 TCCAGCTACTCACTATAACCCC 58.426 50.000 0.00 0.00 0.00 4.95
3666 3836 1.064825 ACCCCTTTATCGCCTATGGG 58.935 55.000 0.00 0.00 37.58 4.00
3669 3839 1.337823 CCCTTTATCGCCTATGGGTCG 60.338 57.143 0.00 1.11 34.90 4.79
3720 3890 2.941064 TCTACCTACCATTGTCGACGAG 59.059 50.000 11.90 3.24 0.00 4.18
3741 3911 2.488153 GGTTTCTGTTGTACCCATCTGC 59.512 50.000 0.00 0.00 0.00 4.26
3772 3942 7.099764 TGGAAAGACAGATAGTTTCAGTGATC 58.900 38.462 0.00 0.00 32.77 2.92
3863 4033 5.582665 GCAGTAAGTTAGATTCTGTTGGAGG 59.417 44.000 0.00 0.00 0.00 4.30
3952 4122 8.467402 AAGAACAGATAGTTTTAGTGACATCG 57.533 34.615 0.00 0.00 41.51 3.84
3957 4127 7.328737 ACAGATAGTTTTAGTGACATCGTCAAC 59.671 37.037 0.00 0.00 44.49 3.18
3960 4130 1.705256 TTAGTGACATCGTCAACGGC 58.295 50.000 2.31 0.00 44.49 5.68
4026 4196 9.606631 AGAATCAAACACAATAGACTAGATTCC 57.393 33.333 0.00 0.00 39.52 3.01
4121 4318 3.779759 CAGAGCCTAGTGATGTCAAGAC 58.220 50.000 0.00 0.00 0.00 3.01
4138 4335 1.428912 AGACTGAGGGCCATCCAAAAA 59.571 47.619 16.13 0.00 38.24 1.94
4186 4383 2.526304 TGACTTCAACCCAAGAGACG 57.474 50.000 0.00 0.00 0.00 4.18
4220 4417 2.555757 CAAAGACAAGGGAGGAAAGCAG 59.444 50.000 0.00 0.00 0.00 4.24
4308 4505 2.207924 AAAGCTGACGACTCGGGGT 61.208 57.895 2.98 0.00 0.00 4.95
4404 4601 0.944311 TCGGCAACACTTCTCTTCGC 60.944 55.000 0.00 0.00 0.00 4.70
4422 4619 1.433471 CTCGGATAGCAGCACGACA 59.567 57.895 0.00 0.00 0.00 4.35
4537 4735 2.234908 GTTCATCCACAGGCTACAGACT 59.765 50.000 0.00 0.00 0.00 3.24
4751 4952 2.420058 ATGTTGATCGTTTCTCCCCC 57.580 50.000 0.00 0.00 0.00 5.40
4829 5031 1.303236 TGGTTGATGGCTTGTCGGG 60.303 57.895 0.00 0.00 0.00 5.14
4852 5054 3.006940 TCGCTAGTGGCTTGTAATTTGG 58.993 45.455 2.90 0.00 39.13 3.28
4876 5078 4.153117 AGAGATTGTGCGTGAGAAATGAAC 59.847 41.667 0.00 0.00 0.00 3.18
4883 5085 4.868171 GTGCGTGAGAAATGAACAGGTATA 59.132 41.667 0.00 0.00 0.00 1.47
4884 5086 5.005779 GTGCGTGAGAAATGAACAGGTATAG 59.994 44.000 0.00 0.00 0.00 1.31
4885 5087 4.025647 GCGTGAGAAATGAACAGGTATAGC 60.026 45.833 0.00 0.00 0.00 2.97
4903 5105 6.017852 GGTATAGCAGCTTTCTTTCATGTACC 60.018 42.308 0.00 0.00 0.00 3.34
4905 5107 3.755378 AGCAGCTTTCTTTCATGTACCAG 59.245 43.478 0.00 0.00 0.00 4.00
4906 5108 3.671702 GCAGCTTTCTTTCATGTACCAGC 60.672 47.826 0.00 0.00 0.00 4.85
4907 5109 3.084786 AGCTTTCTTTCATGTACCAGCC 58.915 45.455 0.00 0.00 0.00 4.85
4921 5126 1.033746 CCAGCCGCATTCCTGATTGT 61.034 55.000 0.00 0.00 0.00 2.71
4925 5130 2.684881 AGCCGCATTCCTGATTGTTTAG 59.315 45.455 0.00 0.00 0.00 1.85
4926 5131 2.223572 GCCGCATTCCTGATTGTTTAGG 60.224 50.000 0.00 0.00 35.34 2.69
4928 5133 2.684881 CGCATTCCTGATTGTTTAGGCT 59.315 45.455 0.00 0.00 34.00 4.58
4929 5134 3.488047 CGCATTCCTGATTGTTTAGGCTG 60.488 47.826 0.00 0.00 34.00 4.85
4930 5135 3.181483 GCATTCCTGATTGTTTAGGCTGG 60.181 47.826 0.00 0.00 34.00 4.85
4931 5136 3.806949 TTCCTGATTGTTTAGGCTGGT 57.193 42.857 0.00 0.00 34.00 4.00
4932 5137 3.350219 TCCTGATTGTTTAGGCTGGTC 57.650 47.619 0.00 0.00 34.00 4.02
4933 5138 2.642311 TCCTGATTGTTTAGGCTGGTCA 59.358 45.455 0.00 0.00 34.00 4.02
4934 5139 3.266772 TCCTGATTGTTTAGGCTGGTCAT 59.733 43.478 0.00 0.00 34.00 3.06
4935 5140 4.473196 TCCTGATTGTTTAGGCTGGTCATA 59.527 41.667 0.00 0.00 34.00 2.15
4936 5141 4.818546 CCTGATTGTTTAGGCTGGTCATAG 59.181 45.833 0.00 0.00 0.00 2.23
4937 5142 5.431765 CTGATTGTTTAGGCTGGTCATAGT 58.568 41.667 0.00 0.00 0.00 2.12
4938 5143 5.185454 TGATTGTTTAGGCTGGTCATAGTG 58.815 41.667 0.00 0.00 0.00 2.74
4939 5144 3.627395 TGTTTAGGCTGGTCATAGTGG 57.373 47.619 0.00 0.00 0.00 4.00
4940 5145 2.238646 TGTTTAGGCTGGTCATAGTGGG 59.761 50.000 0.00 0.00 0.00 4.61
4941 5146 1.507140 TTAGGCTGGTCATAGTGGGG 58.493 55.000 0.00 0.00 0.00 4.96
4942 5147 0.639943 TAGGCTGGTCATAGTGGGGA 59.360 55.000 0.00 0.00 0.00 4.81
4943 5148 0.692419 AGGCTGGTCATAGTGGGGAG 60.692 60.000 0.00 0.00 0.00 4.30
4944 5149 0.983378 GGCTGGTCATAGTGGGGAGT 60.983 60.000 0.00 0.00 0.00 3.85
4945 5150 1.691482 GGCTGGTCATAGTGGGGAGTA 60.691 57.143 0.00 0.00 0.00 2.59
4946 5151 2.116238 GCTGGTCATAGTGGGGAGTAA 58.884 52.381 0.00 0.00 0.00 2.24
4947 5152 2.158943 GCTGGTCATAGTGGGGAGTAAC 60.159 54.545 0.00 0.00 0.00 2.50
4948 5153 3.375699 CTGGTCATAGTGGGGAGTAACT 58.624 50.000 0.00 0.00 0.00 2.24
4949 5154 3.775316 CTGGTCATAGTGGGGAGTAACTT 59.225 47.826 0.00 0.00 0.00 2.66
4950 5155 4.950361 TGGTCATAGTGGGGAGTAACTTA 58.050 43.478 0.00 0.00 0.00 2.24
4951 5156 4.713321 TGGTCATAGTGGGGAGTAACTTAC 59.287 45.833 0.00 0.00 0.00 2.34
4952 5157 4.961099 GGTCATAGTGGGGAGTAACTTACT 59.039 45.833 0.76 0.76 42.86 2.24
4953 5158 6.131961 GGTCATAGTGGGGAGTAACTTACTA 58.868 44.000 1.21 0.00 39.59 1.82
4954 5159 6.264970 GGTCATAGTGGGGAGTAACTTACTAG 59.735 46.154 1.21 0.00 39.59 2.57
4955 5160 6.832900 GTCATAGTGGGGAGTAACTTACTAGT 59.167 42.308 0.00 0.00 39.59 2.57
4956 5161 7.995488 GTCATAGTGGGGAGTAACTTACTAGTA 59.005 40.741 0.00 0.00 39.59 1.82
4957 5162 8.216423 TCATAGTGGGGAGTAACTTACTAGTAG 58.784 40.741 2.23 0.00 39.59 2.57
4958 5163 6.400096 AGTGGGGAGTAACTTACTAGTAGT 57.600 41.667 8.14 8.14 39.59 2.73
4959 5164 7.516450 AGTGGGGAGTAACTTACTAGTAGTA 57.484 40.000 5.90 5.90 39.59 1.82
4960 5165 7.933223 AGTGGGGAGTAACTTACTAGTAGTAA 58.067 38.462 19.32 19.32 39.59 2.24
4961 5166 7.831690 AGTGGGGAGTAACTTACTAGTAGTAAC 59.168 40.741 17.12 9.60 39.59 2.50
4962 5167 7.611855 GTGGGGAGTAACTTACTAGTAGTAACA 59.388 40.741 17.12 8.79 39.59 2.41
4963 5168 8.339247 TGGGGAGTAACTTACTAGTAGTAACAT 58.661 37.037 17.12 11.74 39.59 2.71
4964 5169 8.628280 GGGGAGTAACTTACTAGTAGTAACATG 58.372 40.741 17.12 11.23 39.59 3.21
4965 5170 8.134261 GGGAGTAACTTACTAGTAGTAACATGC 58.866 40.741 17.12 12.37 39.59 4.06
4966 5171 8.680903 GGAGTAACTTACTAGTAGTAACATGCA 58.319 37.037 17.12 0.00 39.59 3.96
4984 5189 6.830912 ACATGCATATGTTACTAGTCCATGT 58.169 36.000 14.97 8.88 45.01 3.21
4985 5190 7.282585 ACATGCATATGTTACTAGTCCATGTT 58.717 34.615 14.97 3.74 45.01 2.71
4986 5191 7.227314 ACATGCATATGTTACTAGTCCATGTTG 59.773 37.037 14.97 13.13 45.01 3.33
4987 5192 6.883744 TGCATATGTTACTAGTCCATGTTGA 58.116 36.000 14.97 0.15 0.00 3.18
4988 5193 6.986231 TGCATATGTTACTAGTCCATGTTGAG 59.014 38.462 14.97 2.66 0.00 3.02
4989 5194 6.425114 GCATATGTTACTAGTCCATGTTGAGG 59.575 42.308 14.97 2.37 0.00 3.86
4990 5195 7.686859 GCATATGTTACTAGTCCATGTTGAGGA 60.687 40.741 14.97 0.00 0.00 3.71
4999 5204 1.813513 CATGTTGAGGACAGGGTGTC 58.186 55.000 0.00 0.00 46.23 3.67
5011 5216 2.203294 GGTGTCAACCCGTTGGCT 60.203 61.111 12.94 0.00 44.87 4.75
5012 5217 2.551912 GGTGTCAACCCGTTGGCTG 61.552 63.158 12.94 0.00 44.87 4.85
5013 5218 2.203280 TGTCAACCCGTTGGCTGG 60.203 61.111 12.94 0.00 44.87 4.85
5014 5219 2.112297 GTCAACCCGTTGGCTGGA 59.888 61.111 4.94 0.00 41.62 3.86
5015 5220 2.112297 TCAACCCGTTGGCTGGAC 59.888 61.111 7.68 0.00 40.78 4.02
5016 5221 2.203280 CAACCCGTTGGCTGGACA 60.203 61.111 0.00 0.00 36.95 4.02
5017 5222 2.113139 AACCCGTTGGCTGGACAG 59.887 61.111 0.00 0.00 33.59 3.51
5035 5240 2.586792 CTGGGGTAGCTGCCAGTC 59.413 66.667 23.21 11.61 0.00 3.51
5036 5241 3.009115 TGGGGTAGCTGCCAGTCC 61.009 66.667 23.21 14.83 0.00 3.85
5037 5242 3.009115 GGGGTAGCTGCCAGTCCA 61.009 66.667 23.21 0.00 0.00 4.02
5038 5243 2.269241 GGGTAGCTGCCAGTCCAC 59.731 66.667 23.21 0.00 0.00 4.02
5039 5244 2.294078 GGGTAGCTGCCAGTCCACT 61.294 63.158 23.21 0.00 0.00 4.00
5040 5245 1.219393 GGTAGCTGCCAGTCCACTC 59.781 63.158 16.95 0.00 0.00 3.51
5041 5246 1.544825 GGTAGCTGCCAGTCCACTCA 61.545 60.000 16.95 0.00 0.00 3.41
5042 5247 0.321671 GTAGCTGCCAGTCCACTCAA 59.678 55.000 0.00 0.00 0.00 3.02
5043 5248 0.610174 TAGCTGCCAGTCCACTCAAG 59.390 55.000 0.00 0.00 0.00 3.02
5044 5249 1.072159 GCTGCCAGTCCACTCAAGT 59.928 57.895 0.00 0.00 0.00 3.16
5045 5250 0.536006 GCTGCCAGTCCACTCAAGTT 60.536 55.000 0.00 0.00 0.00 2.66
5046 5251 1.270839 GCTGCCAGTCCACTCAAGTTA 60.271 52.381 0.00 0.00 0.00 2.24
5047 5252 2.810400 GCTGCCAGTCCACTCAAGTTAA 60.810 50.000 0.00 0.00 0.00 2.01
5048 5253 3.070018 CTGCCAGTCCACTCAAGTTAAG 58.930 50.000 0.00 0.00 0.00 1.85
5049 5254 1.807142 GCCAGTCCACTCAAGTTAAGC 59.193 52.381 0.00 0.00 0.00 3.09
5050 5255 2.427506 CCAGTCCACTCAAGTTAAGCC 58.572 52.381 0.00 0.00 0.00 4.35
5051 5256 2.427506 CAGTCCACTCAAGTTAAGCCC 58.572 52.381 0.00 0.00 0.00 5.19
5052 5257 1.351350 AGTCCACTCAAGTTAAGCCCC 59.649 52.381 0.00 0.00 0.00 5.80
5053 5258 0.323629 TCCACTCAAGTTAAGCCCCG 59.676 55.000 0.00 0.00 0.00 5.73
5054 5259 0.676782 CCACTCAAGTTAAGCCCCGG 60.677 60.000 0.00 0.00 0.00 5.73
5055 5260 1.002502 ACTCAAGTTAAGCCCCGGC 60.003 57.895 0.00 0.00 42.33 6.13
5065 5270 2.676471 GCCCCGGCTTTGACATGT 60.676 61.111 0.00 0.00 38.26 3.21
5066 5271 1.377987 GCCCCGGCTTTGACATGTA 60.378 57.895 0.00 0.00 38.26 2.29
5073 5278 3.585862 CGGCTTTGACATGTAGTAGTGT 58.414 45.455 0.00 0.00 0.00 3.55
5076 5281 5.178797 GGCTTTGACATGTAGTAGTGTGAT 58.821 41.667 0.00 0.00 0.00 3.06
5087 5292 1.009078 TAGTGTGATGCGAGCAATGC 58.991 50.000 0.57 0.00 0.00 3.56
5088 5293 1.226491 GTGTGATGCGAGCAATGCC 60.226 57.895 0.00 0.00 0.00 4.40
5089 5294 2.409055 TGTGATGCGAGCAATGCCC 61.409 57.895 0.00 0.00 0.00 5.36
5090 5295 2.045143 TGATGCGAGCAATGCCCA 60.045 55.556 0.00 0.00 0.00 5.36
5091 5296 1.454295 TGATGCGAGCAATGCCCAT 60.454 52.632 0.00 2.24 0.00 4.00
5092 5297 1.038681 TGATGCGAGCAATGCCCATT 61.039 50.000 0.00 0.00 0.00 3.16
5103 5308 4.114058 CAATGCCCATTGTGTTAGAAGG 57.886 45.455 11.80 0.00 42.32 3.46
5104 5309 3.737559 ATGCCCATTGTGTTAGAAGGA 57.262 42.857 0.00 0.00 0.00 3.36
5105 5310 3.071874 TGCCCATTGTGTTAGAAGGAG 57.928 47.619 0.00 0.00 0.00 3.69
5121 5326 2.777094 AGGAGAAAACAGAGCAAGAGC 58.223 47.619 0.00 0.00 42.56 4.09
5123 5328 2.498167 GAGAAAACAGAGCAAGAGCCA 58.502 47.619 0.00 0.00 43.56 4.75
5148 5353 5.352284 AGCTATTACAATCACCAGAACGAG 58.648 41.667 0.00 0.00 0.00 4.18
5156 5361 1.340248 TCACCAGAACGAGGTTCAGTC 59.660 52.381 10.74 0.00 44.11 3.51
5163 5368 1.557099 ACGAGGTTCAGTCTGCCATA 58.443 50.000 0.00 0.00 0.00 2.74
5169 5374 0.981183 TTCAGTCTGCCATAACCCGT 59.019 50.000 0.00 0.00 0.00 5.28
5177 5382 2.872245 CTGCCATAACCCGTATGTGAAG 59.128 50.000 0.00 0.00 38.38 3.02
5179 5384 2.870411 GCCATAACCCGTATGTGAAGAC 59.130 50.000 0.00 0.00 38.38 3.01
5188 5393 3.469629 CGTATGTGAAGACGCAACAAAG 58.530 45.455 0.00 0.00 39.99 2.77
5189 5394 3.059868 CGTATGTGAAGACGCAACAAAGT 60.060 43.478 0.00 0.00 39.99 2.66
5190 5395 4.149221 CGTATGTGAAGACGCAACAAAGTA 59.851 41.667 0.00 0.00 39.99 2.24
5191 5396 5.163992 CGTATGTGAAGACGCAACAAAGTAT 60.164 40.000 0.00 0.00 39.99 2.12
5192 5397 5.689383 ATGTGAAGACGCAACAAAGTATT 57.311 34.783 0.00 0.00 39.99 1.89
5193 5398 6.795098 ATGTGAAGACGCAACAAAGTATTA 57.205 33.333 0.00 0.00 39.99 0.98
5194 5399 5.981174 TGTGAAGACGCAACAAAGTATTAC 58.019 37.500 0.00 0.00 33.38 1.89
5207 5413 9.365311 CAACAAAGTATTACTAAGTTTGACACG 57.635 33.333 11.22 0.00 38.84 4.49
5212 5418 9.595823 AAGTATTACTAAGTTTGACACGCATAT 57.404 29.630 0.00 0.00 0.00 1.78
5213 5419 9.031360 AGTATTACTAAGTTTGACACGCATATG 57.969 33.333 0.00 0.00 0.00 1.78
5214 5420 6.656314 TTACTAAGTTTGACACGCATATGG 57.344 37.500 4.56 0.00 0.00 2.74
5216 5422 1.819928 AGTTTGACACGCATATGGCA 58.180 45.000 4.56 0.00 45.17 4.92
5224 5430 3.329386 ACACGCATATGGCACTGATATC 58.671 45.455 4.56 0.00 45.17 1.63
5226 5432 1.929169 CGCATATGGCACTGATATCCG 59.071 52.381 4.56 0.00 45.17 4.18
5227 5433 1.667724 GCATATGGCACTGATATCCGC 59.332 52.381 4.56 0.32 43.97 5.54
5247 5454 2.944094 GCCAAACTGATTACCGGTGGAT 60.944 50.000 19.93 11.47 33.87 3.41
5336 5550 3.776969 TCATGAACTCCTATCCAGCAGTT 59.223 43.478 0.00 0.00 0.00 3.16
5341 5555 3.177228 ACTCCTATCCAGCAGTTCTTGT 58.823 45.455 0.00 0.00 0.00 3.16
5343 5557 4.777896 ACTCCTATCCAGCAGTTCTTGTAA 59.222 41.667 0.00 0.00 0.00 2.41
5391 5605 3.716353 TCTTGGATGCTGGATTAAGGCTA 59.284 43.478 0.00 0.00 0.00 3.93
5392 5606 3.777106 TGGATGCTGGATTAAGGCTAG 57.223 47.619 0.00 0.00 0.00 3.42
5393 5607 2.224621 TGGATGCTGGATTAAGGCTAGC 60.225 50.000 6.04 6.04 39.91 3.42
5394 5608 2.039613 GGATGCTGGATTAAGGCTAGCT 59.960 50.000 15.72 0.00 40.12 3.32
5400 5614 2.843730 TGGATTAAGGCTAGCTGACCAA 59.156 45.455 15.72 2.68 0.00 3.67
5413 5627 6.814146 GCTAGCTGACCAACTAATGATATACC 59.186 42.308 7.70 0.00 0.00 2.73
5414 5628 7.310113 GCTAGCTGACCAACTAATGATATACCT 60.310 40.741 7.70 0.00 0.00 3.08
5415 5629 9.244292 CTAGCTGACCAACTAATGATATACCTA 57.756 37.037 0.00 0.00 0.00 3.08
5416 5630 8.128322 AGCTGACCAACTAATGATATACCTAG 57.872 38.462 0.00 0.00 0.00 3.02
5418 5632 7.241042 TGACCAACTAATGATATACCTAGCC 57.759 40.000 0.00 0.00 0.00 3.93
5420 5634 7.291416 TGACCAACTAATGATATACCTAGCCAA 59.709 37.037 0.00 0.00 0.00 4.52
5422 5636 6.879458 CCAACTAATGATATACCTAGCCAACC 59.121 42.308 0.00 0.00 0.00 3.77
5428 5642 2.801077 ATACCTAGCCAACCACAACC 57.199 50.000 0.00 0.00 0.00 3.77
5437 5651 0.827089 CAACCACAACCAGGGCATCA 60.827 55.000 0.00 0.00 0.00 3.07
5439 5653 0.323725 ACCACAACCAGGGCATCATC 60.324 55.000 0.00 0.00 0.00 2.92
5448 5662 3.245158 ACCAGGGCATCATCATTCCATAG 60.245 47.826 0.00 0.00 0.00 2.23
5449 5663 3.245158 CCAGGGCATCATCATTCCATAGT 60.245 47.826 0.00 0.00 0.00 2.12
5451 5665 5.339778 CCAGGGCATCATCATTCCATAGTAT 60.340 44.000 0.00 0.00 0.00 2.12
5452 5666 6.185511 CAGGGCATCATCATTCCATAGTATT 58.814 40.000 0.00 0.00 0.00 1.89
5453 5667 6.662234 CAGGGCATCATCATTCCATAGTATTT 59.338 38.462 0.00 0.00 0.00 1.40
5454 5668 6.662234 AGGGCATCATCATTCCATAGTATTTG 59.338 38.462 0.00 0.00 0.00 2.32
5456 5670 6.127535 GGCATCATCATTCCATAGTATTTGGG 60.128 42.308 0.00 0.00 34.85 4.12
5457 5671 6.626623 GCATCATCATTCCATAGTATTTGGGC 60.627 42.308 0.00 0.00 34.85 5.36
5458 5672 5.951204 TCATCATTCCATAGTATTTGGGCA 58.049 37.500 0.00 0.00 34.85 5.36
5459 5673 6.554784 TCATCATTCCATAGTATTTGGGCAT 58.445 36.000 0.00 0.00 34.85 4.40
5460 5674 6.660521 TCATCATTCCATAGTATTTGGGCATC 59.339 38.462 0.00 0.00 34.85 3.91
5461 5675 6.204852 TCATTCCATAGTATTTGGGCATCT 57.795 37.500 0.00 0.00 34.85 2.90
5462 5676 7.328404 TCATTCCATAGTATTTGGGCATCTA 57.672 36.000 0.00 0.00 34.85 1.98
5463 5677 7.754624 TCATTCCATAGTATTTGGGCATCTAA 58.245 34.615 0.00 0.00 34.85 2.10
5464 5678 7.884877 TCATTCCATAGTATTTGGGCATCTAAG 59.115 37.037 0.00 0.00 34.85 2.18
5465 5679 5.560724 TCCATAGTATTTGGGCATCTAAGC 58.439 41.667 0.00 0.00 34.85 3.09
5466 5680 5.310594 TCCATAGTATTTGGGCATCTAAGCT 59.689 40.000 0.00 0.00 34.85 3.74
5482 5696 7.713073 GCATCTAAGCTATATTTGGGTATCCTC 59.287 40.741 0.00 0.00 0.00 3.71
5503 5728 2.615912 CCAAGCCTGCAAATCTAGTAGC 59.384 50.000 0.00 0.00 0.00 3.58
5504 5729 2.231215 AGCCTGCAAATCTAGTAGCG 57.769 50.000 0.00 0.00 0.00 4.26
5522 5747 3.985912 GCGGTAGCAGTAGTAAAACAC 57.014 47.619 0.00 0.00 44.35 3.32
5523 5748 3.582780 GCGGTAGCAGTAGTAAAACACT 58.417 45.455 0.00 0.00 44.35 3.55
5526 5751 5.408356 CGGTAGCAGTAGTAAAACACTGAT 58.592 41.667 5.93 1.96 43.99 2.90
5528 5753 6.625300 CGGTAGCAGTAGTAAAACACTGATCT 60.625 42.308 5.93 0.00 43.99 2.75
5529 5754 7.414873 CGGTAGCAGTAGTAAAACACTGATCTA 60.415 40.741 5.93 0.00 43.99 1.98
5530 5755 7.916450 GGTAGCAGTAGTAAAACACTGATCTAG 59.084 40.741 5.93 0.00 43.99 2.43
5531 5756 6.334202 AGCAGTAGTAAAACACTGATCTAGC 58.666 40.000 5.93 0.00 43.99 3.42
5532 5757 6.153680 AGCAGTAGTAAAACACTGATCTAGCT 59.846 38.462 5.93 0.00 43.99 3.32
5585 5825 2.525629 TGCGGGGAAGGTCTGACA 60.526 61.111 10.38 0.00 0.00 3.58
5590 5830 0.899019 GGGGAAGGTCTGACAGACTC 59.101 60.000 29.70 21.47 44.46 3.36
5598 5838 0.113190 TCTGACAGACTCAGGGCTCA 59.887 55.000 0.00 0.00 46.01 4.26
5607 5847 4.498520 CAGGGCTCATCGTCGCGT 62.499 66.667 5.77 0.00 0.00 6.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
126 137 3.630204 CGATGGCGGCACTATGTC 58.370 61.111 16.34 6.63 0.00 3.06
216 227 2.428085 GGACGAGAGGAAGGGGAGC 61.428 68.421 0.00 0.00 0.00 4.70
253 264 3.625764 ACGGAACCACATGTATGTATTGC 59.374 43.478 0.00 0.92 39.39 3.56
257 268 4.675933 CGAGAACGGAACCACATGTATGTA 60.676 45.833 0.00 0.00 36.10 2.29
258 269 3.596214 GAGAACGGAACCACATGTATGT 58.404 45.455 0.00 0.00 42.84 2.29
259 270 2.603110 CGAGAACGGAACCACATGTATG 59.397 50.000 0.00 0.00 35.72 2.39
317 339 1.664151 GGTAAATACGCAGGACAGCAC 59.336 52.381 0.00 0.00 0.00 4.40
318 340 1.276705 TGGTAAATACGCAGGACAGCA 59.723 47.619 0.00 0.00 0.00 4.41
337 359 3.444034 TGTCGAAGGAGAGTGGATTAGTG 59.556 47.826 0.00 0.00 0.00 2.74
342 364 1.187087 GGTGTCGAAGGAGAGTGGAT 58.813 55.000 0.00 0.00 0.00 3.41
345 367 1.444553 GCGGTGTCGAAGGAGAGTG 60.445 63.158 0.00 0.00 39.00 3.51
346 368 2.637383 GGCGGTGTCGAAGGAGAGT 61.637 63.158 0.00 0.00 39.00 3.24
347 369 2.182030 GGCGGTGTCGAAGGAGAG 59.818 66.667 0.00 0.00 39.00 3.20
348 370 3.379445 GGGCGGTGTCGAAGGAGA 61.379 66.667 0.00 0.00 39.00 3.71
349 371 4.796231 CGGGCGGTGTCGAAGGAG 62.796 72.222 0.00 0.00 39.00 3.69
381 403 0.095935 CAAGAGCGACGGCATGAAAG 59.904 55.000 0.00 0.00 43.41 2.62
384 406 1.446099 GACAAGAGCGACGGCATGA 60.446 57.895 0.00 0.00 43.41 3.07
387 409 2.258591 GAGACAAGAGCGACGGCA 59.741 61.111 0.00 0.00 43.41 5.69
455 477 0.519961 GAACAATCCCCCGACGTTTG 59.480 55.000 0.00 0.00 0.00 2.93
492 514 1.210885 AAAGGGAGGGAGGCCAGAAG 61.211 60.000 5.01 0.00 0.00 2.85
496 518 3.661648 GCAAAGGGAGGGAGGCCA 61.662 66.667 5.01 0.00 0.00 5.36
566 597 0.168128 GATTTTCTTGACACGGCGGG 59.832 55.000 8.04 8.04 0.00 6.13
663 696 1.134560 ACAAGCTAGTACTGCTACGGC 59.865 52.381 16.73 7.23 40.22 5.68
670 703 1.469940 CCTCCGCACAAGCTAGTACTG 60.470 57.143 5.39 0.00 39.10 2.74
796 833 1.407979 CTCCTAACCACCGACGCTAAT 59.592 52.381 0.00 0.00 0.00 1.73
843 887 2.682494 CCCATGCCTGCTGCCTTT 60.682 61.111 0.00 0.00 40.16 3.11
848 892 1.255667 AAAAGAGCCCATGCCTGCTG 61.256 55.000 7.26 0.00 38.11 4.41
916 970 4.712476 AGCTGATTACTTCCTGCCATTAG 58.288 43.478 0.00 0.00 0.00 1.73
978 1035 1.103803 TCTGCAGGGTGTATCTCGTC 58.896 55.000 15.13 0.00 0.00 4.20
991 1048 9.368674 CTTATTACCTATCTTCATGATCTGCAG 57.631 37.037 7.63 7.63 36.65 4.41
1097 1157 5.438972 GCTTATTTCTTGCAGATAAGCGAG 58.561 41.667 20.37 0.00 44.53 5.03
1119 1179 2.772691 CGGACGGAGGGAGTACAGC 61.773 68.421 0.00 0.00 0.00 4.40
1126 1186 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
1127 1187 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
1128 1188 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
1129 1189 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
1130 1190 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
1131 1191 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
1132 1192 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
1133 1193 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
1134 1194 6.657117 TCATTTTGATGACAAGTATTTCCGGA 59.343 34.615 0.00 0.00 37.32 5.14
1135 1195 6.851609 TCATTTTGATGACAAGTATTTCCGG 58.148 36.000 0.00 0.00 37.32 5.14
1136 1196 8.915871 ATTCATTTTGATGACAAGTATTTCCG 57.084 30.769 0.00 0.00 37.32 4.30
1142 1202 9.638239 GCCTTTTATTCATTTTGATGACAAGTA 57.362 29.630 0.00 0.00 37.32 2.24
1143 1203 7.329226 CGCCTTTTATTCATTTTGATGACAAGT 59.671 33.333 0.00 0.00 37.32 3.16
1144 1204 7.201461 CCGCCTTTTATTCATTTTGATGACAAG 60.201 37.037 0.00 0.00 37.32 3.16
1145 1205 6.589523 CCGCCTTTTATTCATTTTGATGACAA 59.410 34.615 0.00 0.00 0.00 3.18
1146 1206 6.098679 CCGCCTTTTATTCATTTTGATGACA 58.901 36.000 0.00 0.00 0.00 3.58
1147 1207 6.034898 CACCGCCTTTTATTCATTTTGATGAC 59.965 38.462 0.00 0.00 0.00 3.06
1148 1208 6.098679 CACCGCCTTTTATTCATTTTGATGA 58.901 36.000 0.00 0.00 0.00 2.92
1149 1209 5.868801 ACACCGCCTTTTATTCATTTTGATG 59.131 36.000 0.00 0.00 0.00 3.07
1150 1210 6.036577 ACACCGCCTTTTATTCATTTTGAT 57.963 33.333 0.00 0.00 0.00 2.57
1151 1211 5.461032 ACACCGCCTTTTATTCATTTTGA 57.539 34.783 0.00 0.00 0.00 2.69
1152 1212 7.257722 AGATACACCGCCTTTTATTCATTTTG 58.742 34.615 0.00 0.00 0.00 2.44
1153 1213 7.404671 AGATACACCGCCTTTTATTCATTTT 57.595 32.000 0.00 0.00 0.00 1.82
1154 1214 7.990886 TCTAGATACACCGCCTTTTATTCATTT 59.009 33.333 0.00 0.00 0.00 2.32
1155 1215 7.441458 GTCTAGATACACCGCCTTTTATTCATT 59.559 37.037 0.00 0.00 0.00 2.57
1156 1216 6.929606 GTCTAGATACACCGCCTTTTATTCAT 59.070 38.462 0.00 0.00 0.00 2.57
1157 1217 6.097839 AGTCTAGATACACCGCCTTTTATTCA 59.902 38.462 0.00 0.00 0.00 2.57
1158 1218 6.514063 AGTCTAGATACACCGCCTTTTATTC 58.486 40.000 0.00 0.00 0.00 1.75
1159 1219 6.481434 AGTCTAGATACACCGCCTTTTATT 57.519 37.500 0.00 0.00 0.00 1.40
1160 1220 6.481434 AAGTCTAGATACACCGCCTTTTAT 57.519 37.500 0.00 0.00 0.00 1.40
1161 1221 5.927281 AAGTCTAGATACACCGCCTTTTA 57.073 39.130 0.00 0.00 0.00 1.52
1162 1222 4.820894 AAGTCTAGATACACCGCCTTTT 57.179 40.909 0.00 0.00 0.00 2.27
1163 1223 6.481434 AATAAGTCTAGATACACCGCCTTT 57.519 37.500 0.00 0.00 0.00 3.11
1164 1224 6.481434 AAATAAGTCTAGATACACCGCCTT 57.519 37.500 0.00 0.00 0.00 4.35
1165 1225 6.481434 AAAATAAGTCTAGATACACCGCCT 57.519 37.500 0.00 0.00 0.00 5.52
1166 1226 7.432059 ACTAAAATAAGTCTAGATACACCGCC 58.568 38.462 0.00 0.00 0.00 6.13
1167 1227 8.868635 AACTAAAATAAGTCTAGATACACCGC 57.131 34.615 0.00 0.00 0.00 5.68
1199 1259 9.657419 GTCATCAAAATGAATAAAAAGGGATGT 57.343 29.630 0.00 0.00 43.42 3.06
1200 1260 9.656040 TGTCATCAAAATGAATAAAAAGGGATG 57.344 29.630 0.00 0.00 43.42 3.51
1202 1262 9.709495 CTTGTCATCAAAATGAATAAAAAGGGA 57.291 29.630 0.00 0.00 43.42 4.20
1203 1263 9.492973 ACTTGTCATCAAAATGAATAAAAAGGG 57.507 29.630 0.00 0.00 43.42 3.95
1211 1271 9.357652 CCGAAAATACTTGTCATCAAAATGAAT 57.642 29.630 0.00 0.00 43.42 2.57
1212 1272 8.572185 TCCGAAAATACTTGTCATCAAAATGAA 58.428 29.630 0.00 0.00 43.42 2.57
1213 1273 8.020819 GTCCGAAAATACTTGTCATCAAAATGA 58.979 33.333 0.00 0.00 39.63 2.57
1214 1274 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
1215 1275 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
1216 1276 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
1217 1277 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
1218 1278 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
1219 1279 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
1220 1280 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
1221 1281 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
1222 1282 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
1223 1283 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
1224 1284 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
1225 1285 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
1226 1286 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
1227 1287 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
1228 1288 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
1229 1289 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
1230 1290 1.479730 GTACTCCCTCCGTCCGAAAAT 59.520 52.381 0.00 0.00 0.00 1.82
1231 1291 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
1232 1292 0.251297 TGTACTCCCTCCGTCCGAAA 60.251 55.000 0.00 0.00 0.00 3.46
1233 1293 0.033796 ATGTACTCCCTCCGTCCGAA 60.034 55.000 0.00 0.00 0.00 4.30
1234 1294 0.033796 AATGTACTCCCTCCGTCCGA 60.034 55.000 0.00 0.00 0.00 4.55
1235 1295 0.384669 GAATGTACTCCCTCCGTCCG 59.615 60.000 0.00 0.00 0.00 4.79
1236 1296 1.777941 AGAATGTACTCCCTCCGTCC 58.222 55.000 0.00 0.00 0.00 4.79
1237 1297 3.553904 ACTAGAATGTACTCCCTCCGTC 58.446 50.000 0.00 0.00 0.00 4.79
1238 1298 3.666345 ACTAGAATGTACTCCCTCCGT 57.334 47.619 0.00 0.00 0.00 4.69
1239 1299 5.071370 ACATACTAGAATGTACTCCCTCCG 58.929 45.833 0.00 0.00 38.31 4.63
1240 1300 6.980416 AACATACTAGAATGTACTCCCTCC 57.020 41.667 0.00 0.00 39.16 4.30
1288 1348 4.023707 ACAAGACTGCAGTTCAAAGCATAC 60.024 41.667 22.65 3.62 40.42 2.39
1291 1351 2.097954 CACAAGACTGCAGTTCAAAGCA 59.902 45.455 22.65 0.00 39.25 3.91
1292 1352 2.098117 ACACAAGACTGCAGTTCAAAGC 59.902 45.455 22.65 6.86 0.00 3.51
1293 1353 3.127548 ACACACAAGACTGCAGTTCAAAG 59.872 43.478 22.65 13.69 0.00 2.77
1295 1355 2.710377 ACACACAAGACTGCAGTTCAA 58.290 42.857 22.65 0.00 0.00 2.69
1310 1394 0.874607 ACGAGAACCGCTGAACACAC 60.875 55.000 0.00 0.00 43.32 3.82
1314 1398 1.214367 TTCAACGAGAACCGCTGAAC 58.786 50.000 0.00 0.00 45.12 3.18
1344 1435 2.087646 GATCTTCACTTCCCTGCCAAC 58.912 52.381 0.00 0.00 0.00 3.77
1412 1505 5.661458 TCTCAGCTTTATCCGGTTAAGAAG 58.339 41.667 0.00 0.36 0.00 2.85
1523 1645 1.292992 TGATGCGCACAAGCTATCAG 58.707 50.000 14.90 0.00 37.20 2.90
1536 1658 5.718146 AGTGAGATCTATGGTAATGATGCG 58.282 41.667 0.00 0.00 0.00 4.73
1572 1694 8.626526 ACCAGATGTTTTCGTTTACTTGTATTT 58.373 29.630 0.00 0.00 0.00 1.40
1575 1697 6.762187 TGACCAGATGTTTTCGTTTACTTGTA 59.238 34.615 0.00 0.00 0.00 2.41
1585 1707 4.386049 GTGACTACTGACCAGATGTTTTCG 59.614 45.833 3.76 0.00 0.00 3.46
1587 1709 5.542779 GAGTGACTACTGACCAGATGTTTT 58.457 41.667 3.76 0.00 37.25 2.43
1646 1768 7.355101 ACCTTCTCTATGGACTACAGTATGAA 58.645 38.462 0.00 0.00 39.69 2.57
1647 1769 6.912426 ACCTTCTCTATGGACTACAGTATGA 58.088 40.000 0.00 0.00 39.69 2.15
1657 1779 6.410540 ACAAGATGAAACCTTCTCTATGGAC 58.589 40.000 0.00 0.00 0.00 4.02
1658 1780 6.627087 ACAAGATGAAACCTTCTCTATGGA 57.373 37.500 0.00 0.00 0.00 3.41
1660 1782 8.600449 GGATACAAGATGAAACCTTCTCTATG 57.400 38.462 0.00 0.00 0.00 2.23
1685 1830 7.447238 TCCTCCAAGGTTTACTCTACAAAAATG 59.553 37.037 0.00 0.00 36.53 2.32
1692 1837 5.741962 AGTTCCTCCAAGGTTTACTCTAC 57.258 43.478 0.00 0.00 36.53 2.59
1700 1845 2.157989 AGGACCTAGTTCCTCCAAGGTT 60.158 50.000 2.31 0.00 42.98 3.50
1701 1846 1.437547 AGGACCTAGTTCCTCCAAGGT 59.562 52.381 2.31 0.00 42.98 3.50
1706 1851 4.384318 GGATGAAAAGGACCTAGTTCCTCC 60.384 50.000 9.61 18.50 46.06 4.30
1727 1872 5.068215 TGGGTGTTTTTATTCTCCTTGGA 57.932 39.130 0.00 0.00 0.00 3.53
1777 1922 7.988937 TGATACATAATGAGGAATTTAGCCCT 58.011 34.615 0.00 0.00 35.02 5.19
2230 2395 5.824904 ATCATCAACCATTAAGAGTGTGC 57.175 39.130 0.00 0.00 0.00 4.57
2297 2463 4.202461 ACTGGGTACAAGCTCATGAAAAGA 60.202 41.667 0.00 0.00 0.00 2.52
2463 2629 7.555554 CCTTGTCATAAGAAACATCCTCAATCT 59.444 37.037 0.00 0.00 0.00 2.40
2467 2633 6.373005 TCCTTGTCATAAGAAACATCCTCA 57.627 37.500 0.00 0.00 0.00 3.86
2505 2671 0.258774 AACCACAGAACTTGGCAGGT 59.741 50.000 0.00 0.00 37.69 4.00
2569 2735 0.809241 GATCAGCAAGCACTCCCTCG 60.809 60.000 0.00 0.00 0.00 4.63
2590 2756 0.742635 CCTTCTCTGCCGAAGCCTTC 60.743 60.000 0.00 0.00 39.21 3.46
2595 2761 3.444388 ACTTACTACCTTCTCTGCCGAAG 59.556 47.826 0.00 0.00 40.01 3.79
2599 2765 4.803098 TTCACTTACTACCTTCTCTGCC 57.197 45.455 0.00 0.00 0.00 4.85
2681 2847 6.566753 GCAGTTTTCACAGGATCAAGTCTTAC 60.567 42.308 0.00 0.00 0.00 2.34
2687 2853 4.572985 TTGCAGTTTTCACAGGATCAAG 57.427 40.909 0.00 0.00 0.00 3.02
2708 2874 6.443849 TGAAGGGGAACTATCTGTGACTTATT 59.556 38.462 0.00 0.00 0.00 1.40
2772 2938 3.999663 AGTTTTCGAAGGATCAGCTCTTG 59.000 43.478 0.00 0.00 0.00 3.02
2787 2953 6.233430 ACTCTGATTCATGTTCAGTTTTCG 57.767 37.500 20.35 11.70 41.13 3.46
2811 2977 7.232188 TGGAACATGTAGGGTAACAATTTGTA 58.768 34.615 0.00 0.00 39.74 2.41
2897 3063 9.331282 GGTAAATTCATCTATAGTCTTGTTGCT 57.669 33.333 0.00 0.00 0.00 3.91
3018 3184 3.491447 GCAAAGTGGCTTGTGAGTTTCAT 60.491 43.478 0.00 0.00 0.00 2.57
3069 3235 7.934120 AGAGCAGATTGGTAATACTGTAAATCC 59.066 37.037 0.00 3.30 33.57 3.01
3096 3262 2.102588 CGGACGGAGGGAGTATTTCATT 59.897 50.000 0.00 0.00 0.00 2.57
3099 3265 0.388294 CCGGACGGAGGGAGTATTTC 59.612 60.000 4.40 0.00 37.50 2.17
3102 3268 0.187851 ATTCCGGACGGAGGGAGTAT 59.812 55.000 13.64 0.61 46.06 2.12
3113 3279 3.921677 TCTGTGACAAGTAATTCCGGAC 58.078 45.455 1.83 0.00 0.00 4.79
3117 3283 6.817765 TCCATTTCTGTGACAAGTAATTCC 57.182 37.500 0.00 0.00 0.00 3.01
3148 3314 4.976987 ACTCTTTTGCGTTTTCTCGAAAA 58.023 34.783 0.93 0.93 36.69 2.29
3149 3315 4.609691 ACTCTTTTGCGTTTTCTCGAAA 57.390 36.364 0.00 0.00 0.00 3.46
3150 3316 4.339429 CAACTCTTTTGCGTTTTCTCGAA 58.661 39.130 0.00 0.00 0.00 3.71
3152 3318 2.464016 GCAACTCTTTTGCGTTTTCTCG 59.536 45.455 0.00 0.00 35.58 4.04
3161 3327 4.460505 GCAATGAAATGCAACTCTTTTGC 58.539 39.130 16.30 16.30 45.70 3.68
3172 3338 4.247258 TCCTGTTCAATGCAATGAAATGC 58.753 39.130 18.50 7.60 46.58 3.56
3173 3339 6.978343 AATCCTGTTCAATGCAATGAAATG 57.022 33.333 18.50 13.35 40.76 2.32
3174 3340 9.504708 TTTTAATCCTGTTCAATGCAATGAAAT 57.495 25.926 18.50 6.21 40.76 2.17
3175 3341 8.899427 TTTTAATCCTGTTCAATGCAATGAAA 57.101 26.923 18.50 3.98 40.76 2.69
3176 3342 8.899427 TTTTTAATCCTGTTCAATGCAATGAA 57.101 26.923 13.20 13.20 36.99 2.57
3179 3345 9.086336 CGTATTTTTAATCCTGTTCAATGCAAT 57.914 29.630 0.00 0.00 0.00 3.56
3180 3346 8.085296 ACGTATTTTTAATCCTGTTCAATGCAA 58.915 29.630 0.00 0.00 0.00 4.08
3181 3347 7.598278 ACGTATTTTTAATCCTGTTCAATGCA 58.402 30.769 0.00 0.00 0.00 3.96
3182 3348 7.968405 AGACGTATTTTTAATCCTGTTCAATGC 59.032 33.333 0.00 0.00 0.00 3.56
3185 3351 9.932207 TCTAGACGTATTTTTAATCCTGTTCAA 57.068 29.630 0.00 0.00 0.00 2.69
3205 3371 7.872881 TGTCGTAGAAATGGATGTATCTAGAC 58.127 38.462 0.00 0.00 39.69 2.59
3253 3419 4.545823 CGGTACATTTACGGCAATCATT 57.454 40.909 0.00 0.00 0.00 2.57
3326 3496 8.105097 TCGTTTCTTGGAACATATCATTGAAA 57.895 30.769 0.00 0.00 39.30 2.69
3350 3520 1.680338 AACAACAGGTGGCAAGACTC 58.320 50.000 0.00 0.00 0.00 3.36
3491 3661 2.749076 CTCGATCCAGTTTCATGGCAAA 59.251 45.455 0.00 0.00 40.41 3.68
3589 3759 5.382618 AATTCTGCACCAACATCTTCTTC 57.617 39.130 0.00 0.00 0.00 2.87
3590 3760 6.240894 TCTAATTCTGCACCAACATCTTCTT 58.759 36.000 0.00 0.00 0.00 2.52
3591 3761 5.809001 TCTAATTCTGCACCAACATCTTCT 58.191 37.500 0.00 0.00 0.00 2.85
3645 3815 2.640826 CCCATAGGCGATAAAGGGGTTA 59.359 50.000 0.00 0.00 31.93 2.85
3651 3821 2.814280 ACGACCCATAGGCGATAAAG 57.186 50.000 0.00 0.00 36.54 1.85
3666 3836 1.822990 TCCCATGTGTCCTCTAACGAC 59.177 52.381 0.00 0.00 0.00 4.34
3669 3839 3.199946 TGGATTCCCATGTGTCCTCTAAC 59.800 47.826 0.00 0.00 37.58 2.34
3696 3866 2.426024 GTCGACAATGGTAGGTAGAGCA 59.574 50.000 11.55 0.00 0.00 4.26
3720 3890 2.488153 GCAGATGGGTACAACAGAAACC 59.512 50.000 0.00 0.00 0.00 3.27
3741 3911 4.559862 ACTATCTGTCTTTCCAACAGGG 57.440 45.455 3.65 0.00 43.48 4.45
3772 3942 1.095228 AGTGCACCACCGTTGACAAG 61.095 55.000 14.63 0.00 34.49 3.16
3840 4010 6.814146 GTCCTCCAACAGAATCTAACTTACTG 59.186 42.308 0.00 0.00 35.14 2.74
3845 4015 3.833070 ACGTCCTCCAACAGAATCTAACT 59.167 43.478 0.00 0.00 0.00 2.24
3863 4033 2.328099 CCCAGCCTGCTTGAACGTC 61.328 63.158 0.00 0.00 0.00 4.34
3952 4122 3.869473 TACCTGGTGCGCCGTTGAC 62.869 63.158 12.58 0.00 37.67 3.18
3957 4127 1.449601 AAATCTACCTGGTGCGCCG 60.450 57.895 12.58 6.49 37.67 6.46
3960 4130 3.310774 CAGAATCAAATCTACCTGGTGCG 59.689 47.826 10.23 0.23 0.00 5.34
4026 4196 6.595716 CCAACCTACCTGAACTTTCTTCTATG 59.404 42.308 0.00 0.00 0.00 2.23
4096 4293 1.326213 ACATCACTAGGCTCTGCGCT 61.326 55.000 9.73 0.00 39.13 5.92
4121 4318 0.533951 GCTTTTTGGATGGCCCTCAG 59.466 55.000 10.44 0.00 35.38 3.35
4138 4335 4.057428 GACAGCACCGGTCTCGCT 62.057 66.667 11.90 11.90 36.10 4.93
4186 4383 1.076549 TCTTTGTGCCATCCCCCAC 59.923 57.895 0.00 0.00 0.00 4.61
4294 4491 4.436998 GCCACCCCGAGTCGTCAG 62.437 72.222 12.31 1.93 0.00 3.51
4308 4505 1.532794 AAAGGGGTTGCGAATGCCA 60.533 52.632 0.00 0.00 41.78 4.92
4380 4577 0.166814 GAGAAGTGTTGCCGATGTGC 59.833 55.000 0.00 0.00 0.00 4.57
4404 4601 0.179137 TTGTCGTGCTGCTATCCGAG 60.179 55.000 0.00 0.00 0.00 4.63
4422 4619 1.183549 ATGCGAAGGACCGAGTACTT 58.816 50.000 0.00 1.61 39.72 2.24
4537 4735 1.367471 CGGACTGCTGTTCCACTCA 59.633 57.895 0.00 0.00 0.00 3.41
4579 4777 1.214589 GTCTCGCCTGAAACGCCTA 59.785 57.895 0.00 0.00 0.00 3.93
4611 4809 2.024176 TTTACAGCAGAGGACCCTGA 57.976 50.000 12.63 0.00 36.29 3.86
4751 4952 0.254462 GGGGAGAAGAGCAAGGAAGG 59.746 60.000 0.00 0.00 0.00 3.46
4752 4953 0.254462 GGGGGAGAAGAGCAAGGAAG 59.746 60.000 0.00 0.00 0.00 3.46
4811 5013 1.303236 CCCGACAAGCCATCAACCA 60.303 57.895 0.00 0.00 0.00 3.67
4852 5054 3.928992 TCATTTCTCACGCACAATCTCTC 59.071 43.478 0.00 0.00 0.00 3.20
4876 5078 5.587844 ACATGAAAGAAAGCTGCTATACCTG 59.412 40.000 0.90 0.00 0.00 4.00
4883 5085 3.754965 TGGTACATGAAAGAAAGCTGCT 58.245 40.909 0.00 0.00 0.00 4.24
4884 5086 3.671702 GCTGGTACATGAAAGAAAGCTGC 60.672 47.826 0.00 0.00 38.20 5.25
4885 5087 3.119708 GGCTGGTACATGAAAGAAAGCTG 60.120 47.826 0.00 0.00 38.20 4.24
4903 5105 0.813184 AACAATCAGGAATGCGGCTG 59.187 50.000 0.00 0.00 0.00 4.85
4905 5107 2.223572 CCTAAACAATCAGGAATGCGGC 60.224 50.000 0.00 0.00 33.42 6.53
4906 5108 2.223572 GCCTAAACAATCAGGAATGCGG 60.224 50.000 0.00 0.00 33.42 5.69
4907 5109 2.684881 AGCCTAAACAATCAGGAATGCG 59.315 45.455 0.00 0.00 33.42 4.73
4921 5126 1.843851 CCCCACTATGACCAGCCTAAA 59.156 52.381 0.00 0.00 0.00 1.85
4925 5130 0.983378 ACTCCCCACTATGACCAGCC 60.983 60.000 0.00 0.00 0.00 4.85
4926 5131 1.789523 TACTCCCCACTATGACCAGC 58.210 55.000 0.00 0.00 0.00 4.85
4928 5133 3.484953 AGTTACTCCCCACTATGACCA 57.515 47.619 0.00 0.00 0.00 4.02
4929 5134 4.961099 AGTAAGTTACTCCCCACTATGACC 59.039 45.833 9.85 0.00 32.47 4.02
4930 5135 6.832900 ACTAGTAAGTTACTCCCCACTATGAC 59.167 42.308 18.77 0.00 40.14 3.06
4931 5136 6.978261 ACTAGTAAGTTACTCCCCACTATGA 58.022 40.000 18.77 0.00 40.14 2.15
4932 5137 7.997803 ACTACTAGTAAGTTACTCCCCACTATG 59.002 40.741 18.77 4.51 40.14 2.23
4933 5138 8.111928 ACTACTAGTAAGTTACTCCCCACTAT 57.888 38.462 18.77 0.00 40.14 2.12
4934 5139 7.516450 ACTACTAGTAAGTTACTCCCCACTA 57.484 40.000 18.77 0.00 40.14 2.74
4935 5140 6.400096 ACTACTAGTAAGTTACTCCCCACT 57.600 41.667 18.77 0.00 40.14 4.00
4936 5141 7.611855 TGTTACTACTAGTAAGTTACTCCCCAC 59.388 40.741 18.77 8.66 40.95 4.61
4937 5142 7.698912 TGTTACTACTAGTAAGTTACTCCCCA 58.301 38.462 18.77 1.08 40.95 4.96
4938 5143 8.628280 CATGTTACTACTAGTAAGTTACTCCCC 58.372 40.741 18.77 1.71 40.95 4.81
4939 5144 8.134261 GCATGTTACTACTAGTAAGTTACTCCC 58.866 40.741 18.77 1.23 40.95 4.30
4940 5145 8.680903 TGCATGTTACTACTAGTAAGTTACTCC 58.319 37.037 18.77 0.32 40.95 3.85
4961 5166 7.442062 TCAACATGGACTAGTAACATATGCATG 59.558 37.037 10.16 9.01 42.72 4.06
4962 5167 7.508687 TCAACATGGACTAGTAACATATGCAT 58.491 34.615 3.79 3.79 0.00 3.96
4963 5168 6.883744 TCAACATGGACTAGTAACATATGCA 58.116 36.000 11.08 0.00 0.00 3.96
4964 5169 6.425114 CCTCAACATGGACTAGTAACATATGC 59.575 42.308 11.08 0.00 0.00 3.14
4965 5170 7.726216 TCCTCAACATGGACTAGTAACATATG 58.274 38.462 11.08 0.00 0.00 1.78
4966 5171 7.914427 TCCTCAACATGGACTAGTAACATAT 57.086 36.000 11.08 0.00 0.00 1.78
4978 5183 0.692476 CACCCTGTCCTCAACATGGA 59.308 55.000 6.51 0.00 44.16 3.41
4979 5184 0.401738 ACACCCTGTCCTCAACATGG 59.598 55.000 0.00 0.00 46.14 3.66
4980 5185 1.072173 TGACACCCTGTCCTCAACATG 59.928 52.381 0.00 0.00 46.40 3.21
4981 5186 1.434188 TGACACCCTGTCCTCAACAT 58.566 50.000 0.00 0.00 46.40 2.71
4982 5187 1.134220 GTTGACACCCTGTCCTCAACA 60.134 52.381 4.83 0.00 46.40 3.33
4983 5188 1.594331 GTTGACACCCTGTCCTCAAC 58.406 55.000 0.00 0.00 46.40 3.18
4984 5189 0.472471 GGTTGACACCCTGTCCTCAA 59.528 55.000 0.00 0.00 46.40 3.02
4985 5190 2.142220 GGTTGACACCCTGTCCTCA 58.858 57.895 0.00 0.00 46.40 3.86
4994 5199 2.203294 AGCCAACGGGTTGACACC 60.203 61.111 12.89 0.00 42.93 4.16
4999 5204 2.203280 TGTCCAGCCAACGGGTTG 60.203 61.111 4.58 4.58 44.38 3.77
5000 5205 2.113139 CTGTCCAGCCAACGGGTT 59.887 61.111 0.00 0.00 36.17 4.11
5019 5224 3.009115 GGACTGGCAGCTACCCCA 61.009 66.667 15.89 0.00 0.00 4.96
5020 5225 3.009115 TGGACTGGCAGCTACCCC 61.009 66.667 15.89 8.79 0.00 4.95
5021 5226 2.245438 GAGTGGACTGGCAGCTACCC 62.245 65.000 15.89 11.31 0.00 3.69
5022 5227 1.219393 GAGTGGACTGGCAGCTACC 59.781 63.158 15.89 15.80 0.00 3.18
5023 5228 0.321671 TTGAGTGGACTGGCAGCTAC 59.678 55.000 15.89 14.93 0.00 3.58
5024 5229 0.610174 CTTGAGTGGACTGGCAGCTA 59.390 55.000 15.89 2.42 0.00 3.32
5025 5230 1.374190 CTTGAGTGGACTGGCAGCT 59.626 57.895 15.89 2.80 0.00 4.24
5026 5231 0.536006 AACTTGAGTGGACTGGCAGC 60.536 55.000 15.89 7.42 0.00 5.25
5027 5232 2.839486 TAACTTGAGTGGACTGGCAG 57.161 50.000 14.16 14.16 0.00 4.85
5028 5233 2.810400 GCTTAACTTGAGTGGACTGGCA 60.810 50.000 0.00 0.00 0.00 4.92
5029 5234 1.807142 GCTTAACTTGAGTGGACTGGC 59.193 52.381 0.00 0.00 0.00 4.85
5030 5235 2.427506 GGCTTAACTTGAGTGGACTGG 58.572 52.381 0.00 0.00 0.00 4.00
5031 5236 2.427506 GGGCTTAACTTGAGTGGACTG 58.572 52.381 0.00 0.00 0.00 3.51
5032 5237 1.351350 GGGGCTTAACTTGAGTGGACT 59.649 52.381 0.00 0.00 0.00 3.85
5033 5238 1.822506 GGGGCTTAACTTGAGTGGAC 58.177 55.000 0.00 0.00 0.00 4.02
5034 5239 0.323629 CGGGGCTTAACTTGAGTGGA 59.676 55.000 0.00 0.00 0.00 4.02
5035 5240 0.676782 CCGGGGCTTAACTTGAGTGG 60.677 60.000 0.00 0.00 0.00 4.00
5036 5241 1.305930 GCCGGGGCTTAACTTGAGTG 61.306 60.000 2.18 0.00 38.26 3.51
5037 5242 1.002502 GCCGGGGCTTAACTTGAGT 60.003 57.895 2.18 0.00 38.26 3.41
5038 5243 3.905249 GCCGGGGCTTAACTTGAG 58.095 61.111 2.18 0.00 38.26 3.02
5048 5253 1.376609 CTACATGTCAAAGCCGGGGC 61.377 60.000 0.00 0.18 42.33 5.80
5049 5254 0.035439 ACTACATGTCAAAGCCGGGG 60.035 55.000 0.00 0.00 0.00 5.73
5050 5255 2.093658 ACTACTACATGTCAAAGCCGGG 60.094 50.000 0.00 0.00 0.00 5.73
5051 5256 2.930040 CACTACTACATGTCAAAGCCGG 59.070 50.000 0.00 0.00 0.00 6.13
5052 5257 3.367932 CACACTACTACATGTCAAAGCCG 59.632 47.826 0.00 0.00 0.00 5.52
5053 5258 4.566004 TCACACTACTACATGTCAAAGCC 58.434 43.478 0.00 0.00 0.00 4.35
5054 5259 5.446473 GCATCACACTACTACATGTCAAAGC 60.446 44.000 0.00 0.00 0.00 3.51
5055 5260 5.220284 CGCATCACACTACTACATGTCAAAG 60.220 44.000 0.00 0.00 0.00 2.77
5056 5261 4.625311 CGCATCACACTACTACATGTCAAA 59.375 41.667 0.00 0.00 0.00 2.69
5057 5262 4.082463 TCGCATCACACTACTACATGTCAA 60.082 41.667 0.00 0.00 0.00 3.18
5058 5263 3.442273 TCGCATCACACTACTACATGTCA 59.558 43.478 0.00 0.00 0.00 3.58
5059 5264 4.028852 TCGCATCACACTACTACATGTC 57.971 45.455 0.00 0.00 0.00 3.06
5060 5265 3.735208 GCTCGCATCACACTACTACATGT 60.735 47.826 2.69 2.69 0.00 3.21
5061 5266 2.791560 GCTCGCATCACACTACTACATG 59.208 50.000 0.00 0.00 0.00 3.21
5062 5267 2.427095 TGCTCGCATCACACTACTACAT 59.573 45.455 0.00 0.00 0.00 2.29
5063 5268 1.816224 TGCTCGCATCACACTACTACA 59.184 47.619 0.00 0.00 0.00 2.74
5064 5269 2.561733 TGCTCGCATCACACTACTAC 57.438 50.000 0.00 0.00 0.00 2.73
5065 5270 3.447742 CATTGCTCGCATCACACTACTA 58.552 45.455 0.00 0.00 0.00 1.82
5066 5271 2.274437 CATTGCTCGCATCACACTACT 58.726 47.619 0.00 0.00 0.00 2.57
5073 5278 1.038681 AATGGGCATTGCTCGCATCA 61.039 50.000 8.82 0.00 36.30 3.07
5076 5281 2.886610 CAATGGGCATTGCTCGCA 59.113 55.556 8.82 0.00 41.27 5.10
5087 5292 5.534654 TGTTTTCTCCTTCTAACACAATGGG 59.465 40.000 0.00 0.00 0.00 4.00
5088 5293 6.486657 TCTGTTTTCTCCTTCTAACACAATGG 59.513 38.462 0.00 0.00 0.00 3.16
5089 5294 7.496529 TCTGTTTTCTCCTTCTAACACAATG 57.503 36.000 0.00 0.00 0.00 2.82
5090 5295 6.205658 GCTCTGTTTTCTCCTTCTAACACAAT 59.794 38.462 0.00 0.00 0.00 2.71
5091 5296 5.527582 GCTCTGTTTTCTCCTTCTAACACAA 59.472 40.000 0.00 0.00 0.00 3.33
5092 5297 5.057149 GCTCTGTTTTCTCCTTCTAACACA 58.943 41.667 0.00 0.00 0.00 3.72
5093 5298 5.057149 TGCTCTGTTTTCTCCTTCTAACAC 58.943 41.667 0.00 0.00 0.00 3.32
5094 5299 5.290493 TGCTCTGTTTTCTCCTTCTAACA 57.710 39.130 0.00 0.00 0.00 2.41
5095 5300 5.992217 TCTTGCTCTGTTTTCTCCTTCTAAC 59.008 40.000 0.00 0.00 0.00 2.34
5096 5301 6.174720 TCTTGCTCTGTTTTCTCCTTCTAA 57.825 37.500 0.00 0.00 0.00 2.10
5097 5302 5.788450 CTCTTGCTCTGTTTTCTCCTTCTA 58.212 41.667 0.00 0.00 0.00 2.10
5098 5303 4.640364 CTCTTGCTCTGTTTTCTCCTTCT 58.360 43.478 0.00 0.00 0.00 2.85
5099 5304 3.188254 GCTCTTGCTCTGTTTTCTCCTTC 59.812 47.826 0.00 0.00 36.03 3.46
5100 5305 3.145286 GCTCTTGCTCTGTTTTCTCCTT 58.855 45.455 0.00 0.00 36.03 3.36
5101 5306 2.551938 GGCTCTTGCTCTGTTTTCTCCT 60.552 50.000 0.00 0.00 39.59 3.69
5102 5307 1.809547 GGCTCTTGCTCTGTTTTCTCC 59.190 52.381 0.00 0.00 39.59 3.71
5103 5308 2.498167 TGGCTCTTGCTCTGTTTTCTC 58.502 47.619 0.00 0.00 39.59 2.87
5104 5309 2.645838 TGGCTCTTGCTCTGTTTTCT 57.354 45.000 0.00 0.00 39.59 2.52
5105 5310 3.636381 CTTTGGCTCTTGCTCTGTTTTC 58.364 45.455 0.00 0.00 39.59 2.29
5121 5326 6.555315 GTTCTGGTGATTGTAATAGCTTTGG 58.445 40.000 0.00 0.00 0.00 3.28
5123 5328 6.170506 TCGTTCTGGTGATTGTAATAGCTTT 58.829 36.000 0.00 0.00 0.00 3.51
5135 5340 1.971357 ACTGAACCTCGTTCTGGTGAT 59.029 47.619 13.68 0.00 42.83 3.06
5148 5353 1.751437 GGGTTATGGCAGACTGAACC 58.249 55.000 6.65 10.68 39.09 3.62
5156 5361 2.613026 TCACATACGGGTTATGGCAG 57.387 50.000 0.00 0.00 41.93 4.85
5163 5368 0.319083 TGCGTCTTCACATACGGGTT 59.681 50.000 0.00 0.00 39.46 4.11
5169 5374 6.795098 AATACTTTGTTGCGTCTTCACATA 57.205 33.333 0.00 0.00 0.00 2.29
5177 5382 8.277713 TCAAACTTAGTAATACTTTGTTGCGTC 58.722 33.333 0.00 0.00 0.00 5.19
5179 5384 8.065407 TGTCAAACTTAGTAATACTTTGTTGCG 58.935 33.333 0.00 1.22 0.00 4.85
5188 5393 8.273557 CCATATGCGTGTCAAACTTAGTAATAC 58.726 37.037 0.00 0.00 0.00 1.89
5189 5394 7.042321 GCCATATGCGTGTCAAACTTAGTAATA 60.042 37.037 0.00 0.00 0.00 0.98
5190 5395 6.238374 GCCATATGCGTGTCAAACTTAGTAAT 60.238 38.462 0.00 0.00 0.00 1.89
5191 5396 5.064198 GCCATATGCGTGTCAAACTTAGTAA 59.936 40.000 0.00 0.00 0.00 2.24
5192 5397 4.569162 GCCATATGCGTGTCAAACTTAGTA 59.431 41.667 0.00 0.00 0.00 1.82
5193 5398 3.374058 GCCATATGCGTGTCAAACTTAGT 59.626 43.478 0.00 0.00 0.00 2.24
5194 5399 3.373748 TGCCATATGCGTGTCAAACTTAG 59.626 43.478 0.00 0.00 45.60 2.18
5207 5413 1.667724 GCGGATATCAGTGCCATATGC 59.332 52.381 4.83 0.00 41.77 3.14
5214 5420 1.331756 CAGTTTGGCGGATATCAGTGC 59.668 52.381 4.83 5.24 0.00 4.40
5216 5422 3.845781 ATCAGTTTGGCGGATATCAGT 57.154 42.857 4.83 0.00 30.30 3.41
5224 5430 0.675522 ACCGGTAATCAGTTTGGCGG 60.676 55.000 4.49 0.00 0.00 6.13
5226 5432 0.808755 CCACCGGTAATCAGTTTGGC 59.191 55.000 6.87 0.00 0.00 4.52
5227 5433 2.483014 TCCACCGGTAATCAGTTTGG 57.517 50.000 6.87 0.05 0.00 3.28
5269 5476 2.361230 GTGCAGGCTTGGGGGTAC 60.361 66.667 0.00 0.00 0.00 3.34
5270 5477 2.210144 GATGTGCAGGCTTGGGGGTA 62.210 60.000 0.00 0.00 0.00 3.69
5271 5478 3.590466 GATGTGCAGGCTTGGGGGT 62.590 63.158 0.00 0.00 0.00 4.95
5350 5564 7.620555 CCAAGATGGACATCAGGTTTAGCCT 62.621 48.000 14.16 0.00 44.92 4.58
5379 5593 2.477245 TGGTCAGCTAGCCTTAATCCA 58.523 47.619 12.13 9.10 0.00 3.41
5380 5594 3.118223 AGTTGGTCAGCTAGCCTTAATCC 60.118 47.826 12.13 6.57 0.00 3.01
5391 5605 7.310113 GCTAGGTATATCATTAGTTGGTCAGCT 60.310 40.741 0.00 0.00 0.00 4.24
5392 5606 6.814146 GCTAGGTATATCATTAGTTGGTCAGC 59.186 42.308 0.00 0.00 0.00 4.26
5393 5607 7.039011 TGGCTAGGTATATCATTAGTTGGTCAG 60.039 40.741 0.00 0.00 0.00 3.51
5394 5608 6.785466 TGGCTAGGTATATCATTAGTTGGTCA 59.215 38.462 0.00 0.00 0.00 4.02
5400 5614 6.557253 TGTGGTTGGCTAGGTATATCATTAGT 59.443 38.462 0.00 0.00 0.00 2.24
5413 5627 0.609131 CCCTGGTTGTGGTTGGCTAG 60.609 60.000 0.00 0.00 0.00 3.42
5414 5628 1.458486 CCCTGGTTGTGGTTGGCTA 59.542 57.895 0.00 0.00 0.00 3.93
5415 5629 2.198426 CCCTGGTTGTGGTTGGCT 59.802 61.111 0.00 0.00 0.00 4.75
5416 5630 3.615709 GCCCTGGTTGTGGTTGGC 61.616 66.667 0.00 0.00 0.00 4.52
5418 5632 0.827089 TGATGCCCTGGTTGTGGTTG 60.827 55.000 0.00 0.00 0.00 3.77
5420 5634 0.323725 GATGATGCCCTGGTTGTGGT 60.324 55.000 0.00 0.00 0.00 4.16
5422 5636 1.771565 ATGATGATGCCCTGGTTGTG 58.228 50.000 0.00 0.00 0.00 3.33
5428 5642 4.030314 ACTATGGAATGATGATGCCCTG 57.970 45.455 0.00 0.00 0.00 4.45
5437 5651 6.797707 AGATGCCCAAATACTATGGAATGAT 58.202 36.000 0.00 0.00 40.56 2.45
5439 5653 7.362401 GCTTAGATGCCCAAATACTATGGAATG 60.362 40.741 0.00 0.00 40.56 2.67
5448 5662 8.462016 CCAAATATAGCTTAGATGCCCAAATAC 58.538 37.037 0.00 0.00 0.00 1.89
5449 5663 7.615365 CCCAAATATAGCTTAGATGCCCAAATA 59.385 37.037 0.00 0.00 0.00 1.40
5451 5665 5.774690 CCCAAATATAGCTTAGATGCCCAAA 59.225 40.000 0.00 0.00 0.00 3.28
5452 5666 5.162991 ACCCAAATATAGCTTAGATGCCCAA 60.163 40.000 0.00 0.00 0.00 4.12
5453 5667 4.353788 ACCCAAATATAGCTTAGATGCCCA 59.646 41.667 0.00 0.00 0.00 5.36
5454 5668 4.923415 ACCCAAATATAGCTTAGATGCCC 58.077 43.478 0.00 0.00 0.00 5.36
5456 5670 7.569240 AGGATACCCAAATATAGCTTAGATGC 58.431 38.462 0.00 0.00 33.88 3.91
5457 5671 8.207545 GGAGGATACCCAAATATAGCTTAGATG 58.792 40.741 0.00 0.00 33.88 2.90
5458 5672 7.906736 TGGAGGATACCCAAATATAGCTTAGAT 59.093 37.037 0.00 0.00 34.49 1.98
5459 5673 7.253421 TGGAGGATACCCAAATATAGCTTAGA 58.747 38.462 0.00 0.00 34.49 2.10
5460 5674 7.496346 TGGAGGATACCCAAATATAGCTTAG 57.504 40.000 0.00 0.00 34.49 2.18
5461 5675 7.528881 GCTTGGAGGATACCCAAATATAGCTTA 60.529 40.741 0.00 0.00 43.43 3.09
5462 5676 6.748332 GCTTGGAGGATACCCAAATATAGCTT 60.748 42.308 0.00 0.00 43.43 3.74
5463 5677 5.280727 GCTTGGAGGATACCCAAATATAGCT 60.281 44.000 0.00 0.00 43.43 3.32
5464 5678 4.944317 GCTTGGAGGATACCCAAATATAGC 59.056 45.833 0.00 0.00 43.43 2.97
5465 5679 5.251700 AGGCTTGGAGGATACCCAAATATAG 59.748 44.000 0.00 0.00 43.43 1.31
5466 5680 5.014123 CAGGCTTGGAGGATACCCAAATATA 59.986 44.000 0.00 0.00 43.43 0.86
5482 5696 2.615912 GCTACTAGATTTGCAGGCTTGG 59.384 50.000 0.00 0.00 0.00 3.61
5503 5728 4.801891 TCAGTGTTTTACTACTGCTACCG 58.198 43.478 0.00 0.00 43.02 4.02
5504 5729 6.631962 AGATCAGTGTTTTACTACTGCTACC 58.368 40.000 0.00 0.00 43.02 3.18
5531 5756 9.453325 GTACATAGTTACAAGAAGCTTAGCTAG 57.547 37.037 7.32 0.66 38.25 3.42
5532 5757 8.411683 GGTACATAGTTACAAGAAGCTTAGCTA 58.588 37.037 7.32 0.00 38.25 3.32
5585 5825 1.380403 CGACGATGAGCCCTGAGTCT 61.380 60.000 0.00 0.00 0.00 3.24
5590 5830 4.498520 ACGCGACGATGAGCCCTG 62.499 66.667 15.93 0.00 0.00 4.45
5598 5838 4.831307 GACGAGCCACGCGACGAT 62.831 66.667 15.93 0.00 46.94 3.73
5607 5847 1.374125 CATCCACAACGACGAGCCA 60.374 57.895 0.00 0.00 0.00 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.