Multiple sequence alignment - TraesCS2B01G347700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G347700 chr2B 100.000 5694 0 0 1 5694 494290332 494284639 0.000000e+00 10515.0
1 TraesCS2B01G347700 chr2B 100.000 28 0 0 402 429 390391507 390391534 1.000000e-02 52.8
2 TraesCS2B01G347700 chr2A 95.617 2099 75 7 2710 4795 568312262 568310168 0.000000e+00 3350.0
3 TraesCS2B01G347700 chr2A 93.548 1984 83 16 796 2759 568314197 568312239 0.000000e+00 2913.0
4 TraesCS2B01G347700 chr2A 92.148 675 38 10 4771 5433 568309812 568309141 0.000000e+00 939.0
5 TraesCS2B01G347700 chr2A 80.146 685 55 32 150 793 568316873 568316229 2.440000e-118 436.0
6 TraesCS2B01G347700 chr2A 91.743 218 14 2 5479 5694 568307959 568307744 3.330000e-77 300.0
7 TraesCS2B01G347700 chr2D 96.520 1868 58 6 3161 5025 421825018 421823155 0.000000e+00 3083.0
8 TraesCS2B01G347700 chr2D 89.859 2268 136 34 1 2223 421827334 421825116 0.000000e+00 2828.0
9 TraesCS2B01G347700 chr2D 92.255 439 23 7 5020 5456 421822106 421821677 3.770000e-171 612.0
10 TraesCS2B01G347700 chr2D 91.165 249 16 3 5448 5694 421820549 421820305 3.290000e-87 333.0
11 TraesCS2B01G347700 chr2D 90.244 41 3 1 2165 2205 421825016 421825055 1.000000e-02 52.8
12 TraesCS2B01G347700 chr1B 82.917 480 58 10 1539 2017 490002667 490003123 1.480000e-110 411.0
13 TraesCS2B01G347700 chr6A 80.131 458 64 15 1539 1994 495788581 495789013 3.310000e-82 316.0
14 TraesCS2B01G347700 chr6A 89.583 48 4 1 2688 2735 556970588 556970634 6.160000e-05 60.2
15 TraesCS2B01G347700 chr6A 100.000 31 0 0 406 436 193451643 193451673 2.220000e-04 58.4
16 TraesCS2B01G347700 chr1D 87.500 56 6 1 392 446 42824715 42824770 4.760000e-06 63.9
17 TraesCS2B01G347700 chr3B 92.857 42 3 0 407 448 757944004 757944045 1.710000e-05 62.1
18 TraesCS2B01G347700 chr3D 100.000 30 0 0 398 427 566079531 566079502 7.970000e-04 56.5
19 TraesCS2B01G347700 chr5D 100.000 28 0 0 407 434 353307061 353307034 1.000000e-02 52.8
20 TraesCS2B01G347700 chr1A 100.000 28 0 0 399 426 545874348 545874321 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G347700 chr2B 494284639 494290332 5693 True 10515.0 10515 100.00000 1 5694 1 chr2B.!!$R1 5693
1 TraesCS2B01G347700 chr2A 568307744 568316873 9129 True 1587.6 3350 90.64040 150 5694 5 chr2A.!!$R1 5544
2 TraesCS2B01G347700 chr2D 421820305 421827334 7029 True 1714.0 3083 92.44975 1 5694 4 chr2D.!!$R1 5693

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
26 27 0.107897 TTGTGAACGTGGCAGTCACT 60.108 50.0 20.33 0.0 43.94 3.41 F
122 125 0.242825 TTCTCGAAGATTCCGCGTGT 59.757 50.0 4.92 0.0 33.89 4.49 F
1215 3302 0.104409 AGGTGGAGAAGGACAAGGGT 60.104 55.0 0.00 0.0 0.00 4.34 F
2431 4520 1.029681 ACAAAGCCCCGTTTCAAGAC 58.970 50.0 0.00 0.0 0.00 3.01 F
2860 4994 0.249073 CAGTTCGTATCCCTGAGCCG 60.249 60.0 0.00 0.0 0.00 5.52 F
4272 6413 0.178992 TTCAGTGGAACAGGGCAAGG 60.179 55.0 0.00 0.0 41.80 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1102 3189 0.745845 CCGCAGCAGCCATAACTCTT 60.746 55.000 0.00 0.0 37.52 2.85 R
1997 4086 1.808945 GCTGACTTCCTGTGTCAATGG 59.191 52.381 0.00 0.0 42.85 3.16 R
2766 4896 1.035932 GTACCTGACGGCCTAGCAGA 61.036 60.000 15.42 0.0 0.00 4.26 R
4266 6407 1.119684 AAGGAACCACAAACCTTGCC 58.880 50.000 0.00 0.0 41.64 4.52 R
4501 6644 0.035458 CCTCCCGAGCCACAATATCC 59.965 60.000 0.00 0.0 0.00 2.59 R
5344 8927 0.685097 GCTCAACCAGACCTACACCA 59.315 55.000 0.00 0.0 0.00 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 0.107897 TTGTGAACGTGGCAGTCACT 60.108 50.000 20.33 0.00 43.94 3.41
32 33 2.032681 GTGGCAGTCACTCCACCC 59.967 66.667 12.93 0.00 45.26 4.61
33 34 3.625897 TGGCAGTCACTCCACCCG 61.626 66.667 0.00 0.00 0.00 5.28
35 36 4.314440 GCAGTCACTCCACCCGCA 62.314 66.667 0.00 0.00 0.00 5.69
38 39 3.050275 GTCACTCCACCCGCAAGC 61.050 66.667 0.00 0.00 0.00 4.01
53 54 2.729882 CGCAAGCGTCTTAGTAACAAGT 59.270 45.455 6.25 0.00 34.35 3.16
56 57 4.210537 GCAAGCGTCTTAGTAACAAGTTGA 59.789 41.667 10.54 0.00 0.00 3.18
81 82 5.209659 CCACTTAAGGACCTAGGACATACT 58.790 45.833 17.98 0.00 0.00 2.12
116 118 3.589988 TCACAAGCTTCTCGAAGATTCC 58.410 45.455 10.68 0.00 44.21 3.01
119 122 0.526524 AGCTTCTCGAAGATTCCGCG 60.527 55.000 10.68 0.00 40.79 6.46
122 125 0.242825 TTCTCGAAGATTCCGCGTGT 59.757 50.000 4.92 0.00 33.89 4.49
207 219 9.631639 GCATAAACACATTTTTAAGTTGTGAAC 57.368 29.630 16.64 0.00 42.59 3.18
208 220 9.828220 CATAAACACATTTTTAAGTTGTGAACG 57.172 29.630 16.64 0.00 42.59 3.95
211 223 7.876896 ACACATTTTTAAGTTGTGAACGTTT 57.123 28.000 16.64 0.00 42.59 3.60
213 225 8.766151 ACACATTTTTAAGTTGTGAACGTTTTT 58.234 25.926 16.64 0.00 42.59 1.94
225 237 6.395629 TGTGAACGTTTTTAACCATTTTCCA 58.604 32.000 0.46 0.00 0.00 3.53
231 243 8.270080 ACGTTTTTAACCATTTTCCACAAAAT 57.730 26.923 0.00 0.00 42.03 1.82
232 244 8.391859 ACGTTTTTAACCATTTTCCACAAAATC 58.608 29.630 0.00 0.00 39.75 2.17
243 255 7.727331 TTTTCCACAAAATCCATGAACATTC 57.273 32.000 0.00 0.00 0.00 2.67
286 298 9.695884 TTTATTTCAAACAAGCGAACATTTTTC 57.304 25.926 0.00 0.00 0.00 2.29
303 316 9.786105 AACATTTTTCAATTTGTGACCATTTTC 57.214 25.926 0.00 0.00 35.39 2.29
313 326 5.710513 TGTGACCATTTTCTCAAATCCAG 57.289 39.130 0.00 0.00 29.41 3.86
319 332 6.524734 ACCATTTTCTCAAATCCAGGTTTTC 58.475 36.000 0.00 0.00 29.41 2.29
323 336 8.768019 CATTTTCTCAAATCCAGGTTTTCTTTC 58.232 33.333 0.00 0.00 29.41 2.62
327 340 8.021898 TCTCAAATCCAGGTTTTCTTTCAAAT 57.978 30.769 0.00 0.00 0.00 2.32
328 341 8.143835 TCTCAAATCCAGGTTTTCTTTCAAATC 58.856 33.333 0.00 0.00 0.00 2.17
330 343 6.745794 AATCCAGGTTTTCTTTCAAATCCA 57.254 33.333 0.00 0.00 0.00 3.41
331 344 6.940430 ATCCAGGTTTTCTTTCAAATCCAT 57.060 33.333 0.00 0.00 0.00 3.41
333 346 7.135591 TCCAGGTTTTCTTTCAAATCCATTT 57.864 32.000 0.00 0.00 0.00 2.32
334 347 7.572814 TCCAGGTTTTCTTTCAAATCCATTTT 58.427 30.769 0.00 0.00 0.00 1.82
518 558 4.097892 ACAAGTAGGAGTTGCTGGTTTTTG 59.902 41.667 0.00 0.00 31.85 2.44
524 564 2.099756 GAGTTGCTGGTTTTTGCAGAGT 59.900 45.455 0.00 0.00 40.46 3.24
528 568 3.260740 TGCTGGTTTTTGCAGAGTTTTG 58.739 40.909 0.00 0.00 34.84 2.44
529 569 2.609002 GCTGGTTTTTGCAGAGTTTTGG 59.391 45.455 0.00 0.00 0.00 3.28
534 574 5.532779 TGGTTTTTGCAGAGTTTTGGTTTTT 59.467 32.000 0.00 0.00 0.00 1.94
561 608 3.680777 TTTTGAGGGGAGAGTTTTGGT 57.319 42.857 0.00 0.00 0.00 3.67
562 609 3.680777 TTTGAGGGGAGAGTTTTGGTT 57.319 42.857 0.00 0.00 0.00 3.67
563 610 3.680777 TTGAGGGGAGAGTTTTGGTTT 57.319 42.857 0.00 0.00 0.00 3.27
564 611 3.680777 TGAGGGGAGAGTTTTGGTTTT 57.319 42.857 0.00 0.00 0.00 2.43
565 612 3.989056 TGAGGGGAGAGTTTTGGTTTTT 58.011 40.909 0.00 0.00 0.00 1.94
612 659 4.319839 GCAAGTGACTAGAAAACAGAAGCC 60.320 45.833 0.00 0.00 0.00 4.35
668 718 2.117137 CGAGCGTATAATGAGCAACGT 58.883 47.619 0.00 0.00 37.64 3.99
676 726 5.235616 CGTATAATGAGCAACGTATTTGGGT 59.764 40.000 0.00 0.00 35.51 4.51
677 727 6.238266 CGTATAATGAGCAACGTATTTGGGTT 60.238 38.462 0.00 0.00 35.51 4.11
774 827 0.830648 CTGGATCCTAACAAGCGGGA 59.169 55.000 14.23 0.00 0.00 5.14
793 846 0.323957 AAGTAGAAAGCCCACGACCC 59.676 55.000 0.00 0.00 0.00 4.46
865 2952 1.822371 TCTCCGTCCACGAATCATCAA 59.178 47.619 0.00 0.00 43.02 2.57
922 3009 0.249398 AGGAATTCCCTCGAACACCG 59.751 55.000 21.22 0.00 43.31 4.94
1082 3169 2.539081 GGCACCCCACTTCTTCCCT 61.539 63.158 0.00 0.00 0.00 4.20
1096 3183 2.793160 TTCCCTGAGCTGCTTCGCTG 62.793 60.000 2.53 0.00 41.08 5.18
1098 3185 1.810441 CCTGAGCTGCTTCGCTGAG 60.810 63.158 2.53 2.22 41.08 3.35
1102 3189 0.453793 GAGCTGCTTCGCTGAGAGTA 59.546 55.000 2.53 0.00 41.08 2.59
1113 3200 3.066900 TCGCTGAGAGTAAGAGTTATGGC 59.933 47.826 0.00 0.00 0.00 4.40
1215 3302 0.104409 AGGTGGAGAAGGACAAGGGT 60.104 55.000 0.00 0.00 0.00 4.34
1419 3506 2.285743 GTCCTGGGGGCTCTCCTT 60.286 66.667 0.00 0.00 35.33 3.36
1600 3687 4.790962 AGCGCGAGACCGGTAGGA 62.791 66.667 12.10 0.00 41.02 2.94
1668 3755 4.432741 GAGGGGTTCCTGCTGGGC 62.433 72.222 10.07 3.37 45.05 5.36
1986 4075 6.976934 TGATATGCAGACCAGTAGACAATA 57.023 37.500 0.00 0.00 0.00 1.90
1994 4083 6.263392 GCAGACCAGTAGACAATAGACATAGA 59.737 42.308 0.00 0.00 0.00 1.98
1995 4084 7.521423 GCAGACCAGTAGACAATAGACATAGAG 60.521 44.444 0.00 0.00 0.00 2.43
1996 4085 7.500892 CAGACCAGTAGACAATAGACATAGAGT 59.499 40.741 0.00 0.00 0.00 3.24
2009 4098 4.437239 GACATAGAGTCCATTGACACAGG 58.563 47.826 0.00 0.00 44.33 4.00
2026 4115 2.549754 ACAGGAAGTCAGCAAAATGTCG 59.450 45.455 0.00 0.00 0.00 4.35
2125 4214 8.596781 TCTTAGAGTAAGGTCTTGCTAATCTT 57.403 34.615 1.46 0.00 35.67 2.40
2224 4313 2.619646 TGCCAACTAAACTTTTCCCGAC 59.380 45.455 0.00 0.00 0.00 4.79
2325 4414 5.541845 TCTGATCAAAGTTCTACACAGTGG 58.458 41.667 5.31 0.00 0.00 4.00
2358 4447 5.278957 CCTGCTTGCCTTATTAACTTGTTGT 60.279 40.000 0.00 0.00 0.00 3.32
2382 4471 4.251268 GGACTACAATGTGGTTCCTGTAC 58.749 47.826 3.42 0.00 0.00 2.90
2388 4477 4.825085 ACAATGTGGTTCCTGTACGAAATT 59.175 37.500 0.00 0.00 0.00 1.82
2393 4482 6.699366 TGTGGTTCCTGTACGAAATTGTATA 58.301 36.000 0.00 0.00 0.00 1.47
2397 4486 8.670135 TGGTTCCTGTACGAAATTGTATATTTG 58.330 33.333 0.00 0.00 0.00 2.32
2421 4510 3.580895 TCCCTTTTATTTCACAAAGCCCC 59.419 43.478 0.00 0.00 0.00 5.80
2431 4520 1.029681 ACAAAGCCCCGTTTCAAGAC 58.970 50.000 0.00 0.00 0.00 3.01
2480 4574 9.828039 ATATGAATACATATGTGATAGGCACTG 57.172 33.333 18.81 0.00 44.80 3.66
2505 4599 8.792633 TGACGTCTAAGATGAATTCCAATTTTT 58.207 29.630 17.92 0.00 0.00 1.94
2508 4602 9.503427 CGTCTAAGATGAATTCCAATTTTTACC 57.497 33.333 2.27 0.00 0.00 2.85
2605 4704 4.240881 ACAAGCCCTACACATCATCAAT 57.759 40.909 0.00 0.00 0.00 2.57
2609 4708 6.014327 ACAAGCCCTACACATCATCAATTTTT 60.014 34.615 0.00 0.00 0.00 1.94
2646 4745 7.307694 TCTAGCAACAAATAATTGAAGCACAG 58.692 34.615 12.16 9.33 40.07 3.66
2668 4767 1.065551 GTCATAAATCCCCGCAGCAAC 59.934 52.381 0.00 0.00 0.00 4.17
2741 4871 4.534794 AGCGAAAGTTTTGCCAATTTTG 57.465 36.364 21.81 0.00 0.00 2.44
2766 4896 5.413499 CCCATTCAAAATTTTGAGAGCGAT 58.587 37.500 27.52 17.89 46.68 4.58
2787 4917 0.686441 TGCTAGGCCGTCAGGTACAT 60.686 55.000 0.00 0.00 40.50 2.29
2805 4939 5.573282 GGTACATATAGCAAGCTATGTCGTG 59.427 44.000 21.53 16.31 38.94 4.35
2812 4946 2.414161 GCAAGCTATGTCGTGGTTTTCC 60.414 50.000 0.00 0.00 41.14 3.13
2820 4954 2.294979 GTCGTGGTTTTCCTCCTTTGT 58.705 47.619 0.00 0.00 41.38 2.83
2860 4994 0.249073 CAGTTCGTATCCCTGAGCCG 60.249 60.000 0.00 0.00 0.00 5.52
2894 5028 2.610232 GCACCCACCTGCAAATGTTTAG 60.610 50.000 0.00 0.00 37.11 1.85
2938 5072 1.740380 GCATATGCACACCTGACGACT 60.740 52.381 22.84 0.00 41.59 4.18
2939 5073 1.929169 CATATGCACACCTGACGACTG 59.071 52.381 0.00 0.00 0.00 3.51
2978 5112 1.837439 TCCAACTATGCCATTCGACCT 59.163 47.619 0.00 0.00 0.00 3.85
3037 5178 1.135199 CATTACGTGTACCTGACGGCT 60.135 52.381 0.00 0.00 41.21 5.52
3053 5194 1.244816 GGCTGGGACACACCTTTTAC 58.755 55.000 0.00 0.00 38.98 2.01
3056 5197 2.890945 GCTGGGACACACCTTTTACATT 59.109 45.455 0.00 0.00 38.98 2.71
3057 5198 3.305335 GCTGGGACACACCTTTTACATTG 60.305 47.826 0.00 0.00 38.98 2.82
3059 5200 2.890945 GGGACACACCTTTTACATTGCT 59.109 45.455 0.00 0.00 38.98 3.91
3066 5207 6.127479 ACACACCTTTTACATTGCTCTTCAAA 60.127 34.615 0.00 0.00 38.34 2.69
3090 5231 4.456662 TTTTAAAGGGGTAACAGCCAGA 57.543 40.909 0.00 0.00 37.54 3.86
3100 5241 3.634910 GGTAACAGCCAGAAAAACTTCCA 59.365 43.478 0.00 0.00 0.00 3.53
3246 5387 6.049955 TGTAGTATTGACTGCTTAGGCTTT 57.950 37.500 0.00 0.00 38.95 3.51
3260 5401 2.996631 AGGCTTTGTTGATGCTAGGAG 58.003 47.619 0.00 0.00 0.00 3.69
3343 5484 9.388506 ACTTCTATTGACTGAATATCAACAAGG 57.611 33.333 0.00 0.00 38.84 3.61
3731 5872 6.663953 AGGTGTGATTTAGCTCTCTTACTACA 59.336 38.462 0.00 0.00 0.00 2.74
3734 5875 9.372369 GTGTGATTTAGCTCTCTTACTACATTT 57.628 33.333 0.00 0.00 0.00 2.32
4137 6278 9.755804 CATCAGATACATAAGACTTAGAGCAAA 57.244 33.333 0.73 0.00 0.00 3.68
4266 6407 3.923017 GTCCATTTTCAGTGGAACAGG 57.077 47.619 0.00 0.00 46.67 4.00
4272 6413 0.178992 TTCAGTGGAACAGGGCAAGG 60.179 55.000 0.00 0.00 41.80 3.61
4296 6437 3.626930 TGTGGTTCCTTTGTAAACTGCT 58.373 40.909 0.00 0.00 0.00 4.24
4380 6523 7.759489 ATCTTACCTGCATTTCTGTTTTGTA 57.241 32.000 0.00 0.00 0.00 2.41
4390 6533 7.816995 TGCATTTCTGTTTTGTATATTTCCCAC 59.183 33.333 0.00 0.00 0.00 4.61
4409 6552 3.363178 CACGTTTTGGAAAGAGAGTTGC 58.637 45.455 0.00 0.00 0.00 4.17
4478 6621 3.952323 ACATGATTGCAAGATTCTGAGGG 59.048 43.478 4.94 0.00 0.00 4.30
4493 6636 3.136443 TCTGAGGGTGATTGTGTTCTGTT 59.864 43.478 0.00 0.00 0.00 3.16
4501 6644 4.023193 GTGATTGTGTTCTGTTAAGGTGGG 60.023 45.833 0.00 0.00 0.00 4.61
4534 6677 3.708631 CTCGGGAGGATATAATGGATGCT 59.291 47.826 0.00 0.00 0.00 3.79
4724 6867 8.021396 AGTTTTTCAAGGTATACTCGAATTTGC 58.979 33.333 2.25 0.00 0.00 3.68
4857 7381 5.987777 TCACAATGCCAATTCAAAGTTTG 57.012 34.783 9.44 9.44 0.00 2.93
4860 7384 6.373774 TCACAATGCCAATTCAAAGTTTGTTT 59.626 30.769 15.08 7.88 0.00 2.83
4861 7385 6.687958 CACAATGCCAATTCAAAGTTTGTTTC 59.312 34.615 15.08 1.96 0.00 2.78
4862 7386 6.373774 ACAATGCCAATTCAAAGTTTGTTTCA 59.626 30.769 15.08 6.67 0.00 2.69
4864 7388 6.360844 TGCCAATTCAAAGTTTGTTTCATG 57.639 33.333 15.08 8.51 0.00 3.07
4878 7402 2.362077 GTTTCATGTTGGTGTCCTGCTT 59.638 45.455 0.00 0.00 0.00 3.91
4904 7428 5.095490 GCTGTATGTCATGGTAAGCAAAAC 58.905 41.667 0.00 0.00 0.00 2.43
4905 7429 5.335583 GCTGTATGTCATGGTAAGCAAAACA 60.336 40.000 0.00 0.00 0.00 2.83
4947 7471 0.878416 TTGGCAGCAATACAACGTCC 59.122 50.000 0.00 0.00 0.00 4.79
4995 7522 7.438459 GGAAGCTGCTATTTCGTTTATCTAGAA 59.562 37.037 0.90 0.00 0.00 2.10
5008 7535 7.817478 TCGTTTATCTAGAATGCTCAACTTCAA 59.183 33.333 0.00 0.00 0.00 2.69
5010 7537 9.766277 GTTTATCTAGAATGCTCAACTTCAAAG 57.234 33.333 0.00 0.00 0.00 2.77
5053 8634 4.875536 ACTTGGGAAATGCAACTTTTGAAC 59.124 37.500 0.00 0.00 0.00 3.18
5129 8711 2.297701 TGATCCTTTCTTTATGCGGGC 58.702 47.619 0.00 0.00 0.00 6.13
5140 8722 6.701145 TCTTTATGCGGGCAAATATTACAA 57.299 33.333 0.00 0.00 0.00 2.41
5197 8779 4.383850 TTTGGTTTGTTCATGACACCTG 57.616 40.909 0.00 0.00 38.18 4.00
5246 8828 3.296322 TTTTGAAATAAGGCTGGCACG 57.704 42.857 3.38 0.00 0.00 5.34
5258 8840 0.671781 CTGGCACGTTTCCTGAGGAG 60.672 60.000 0.00 0.00 31.21 3.69
5267 8849 6.546395 CACGTTTCCTGAGGAGATATTTTTG 58.454 40.000 0.00 0.00 31.21 2.44
5269 8851 6.149474 ACGTTTCCTGAGGAGATATTTTTGTG 59.851 38.462 0.00 0.00 31.21 3.33
5270 8852 6.149474 CGTTTCCTGAGGAGATATTTTTGTGT 59.851 38.462 0.00 0.00 31.21 3.72
5275 8857 6.207417 CCTGAGGAGATATTTTTGTGTGTGTT 59.793 38.462 0.00 0.00 0.00 3.32
5276 8858 7.390440 CCTGAGGAGATATTTTTGTGTGTGTTA 59.610 37.037 0.00 0.00 0.00 2.41
5399 8997 6.876257 GGATGGTATGAACTATGATTCTCACC 59.124 42.308 0.00 0.00 35.43 4.02
5400 8998 7.256475 GGATGGTATGAACTATGATTCTCACCT 60.256 40.741 11.81 3.46 35.68 4.00
5401 8999 7.055667 TGGTATGAACTATGATTCTCACCTC 57.944 40.000 11.81 0.00 35.68 3.85
5402 9000 6.611236 TGGTATGAACTATGATTCTCACCTCA 59.389 38.462 11.81 0.00 35.68 3.86
5403 9001 7.125659 TGGTATGAACTATGATTCTCACCTCAA 59.874 37.037 11.81 0.00 35.68 3.02
5404 9002 7.439655 GGTATGAACTATGATTCTCACCTCAAC 59.560 40.741 0.00 0.00 33.67 3.18
5405 9003 6.358974 TGAACTATGATTCTCACCTCAACA 57.641 37.500 0.00 0.00 0.00 3.33
5406 9004 6.166279 TGAACTATGATTCTCACCTCAACAC 58.834 40.000 0.00 0.00 0.00 3.32
5416 9014 4.137543 CTCACCTCAACACCTAAAGCTTT 58.862 43.478 17.30 17.30 0.00 3.51
5417 9015 4.134563 TCACCTCAACACCTAAAGCTTTC 58.865 43.478 16.57 0.00 0.00 2.62
5461 10235 4.037208 CACAACCTGCTTTCACATCTCTTT 59.963 41.667 0.00 0.00 0.00 2.52
5485 10259 2.589798 TCCTAAATGCCGAACCGTAG 57.410 50.000 0.00 0.00 0.00 3.51
5487 10261 2.159198 TCCTAAATGCCGAACCGTAGTC 60.159 50.000 0.00 0.00 0.00 2.59
5557 10331 0.439985 CAACCGAGACATTGCGAGTG 59.560 55.000 0.00 0.00 0.00 3.51
5558 10332 1.291877 AACCGAGACATTGCGAGTGC 61.292 55.000 0.00 0.00 43.20 4.40
5597 10371 8.492673 TGTTCCTGCAACTTTTATACTGATAG 57.507 34.615 0.00 0.00 35.79 2.08
5601 10375 4.814234 TGCAACTTTTATACTGATAGGGCG 59.186 41.667 0.00 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 0.100503 ACTGCCACGTTCACAAAAGC 59.899 50.000 0.00 0.00 0.00 3.51
26 27 2.501223 CTAAGACGCTTGCGGGTGGA 62.501 60.000 19.19 0.05 36.32 4.02
32 33 2.729882 ACTTGTTACTAAGACGCTTGCG 59.270 45.455 13.70 13.70 0.00 4.85
33 34 4.210537 TCAACTTGTTACTAAGACGCTTGC 59.789 41.667 2.86 0.00 0.00 4.01
35 36 4.748600 GGTCAACTTGTTACTAAGACGCTT 59.251 41.667 0.00 0.00 0.00 4.68
38 39 4.446719 GTGGGTCAACTTGTTACTAAGACG 59.553 45.833 0.00 0.00 0.00 4.18
53 54 3.178865 CCTAGGTCCTTAAGTGGGTCAA 58.821 50.000 0.00 0.00 0.00 3.18
56 57 2.113052 TGTCCTAGGTCCTTAAGTGGGT 59.887 50.000 9.08 0.00 0.00 4.51
96 98 2.346847 CGGAATCTTCGAGAAGCTTGTG 59.653 50.000 2.10 0.00 38.28 3.33
181 184 9.631639 GTTCACAACTTAAAAATGTGTTTATGC 57.368 29.630 12.16 0.00 43.72 3.14
185 188 7.876896 ACGTTCACAACTTAAAAATGTGTTT 57.123 28.000 12.16 0.00 43.72 2.83
199 202 7.148623 TGGAAAATGGTTAAAAACGTTCACAAC 60.149 33.333 0.00 5.82 0.00 3.32
200 203 6.872020 TGGAAAATGGTTAAAAACGTTCACAA 59.128 30.769 0.00 0.00 0.00 3.33
207 219 7.853437 GGATTTTGTGGAAAATGGTTAAAAACG 59.147 33.333 0.00 0.00 36.00 3.60
208 220 8.678199 TGGATTTTGTGGAAAATGGTTAAAAAC 58.322 29.630 0.00 0.00 36.00 2.43
211 223 8.213679 TCATGGATTTTGTGGAAAATGGTTAAA 58.786 29.630 0.00 0.00 36.00 1.52
213 225 7.308450 TCATGGATTTTGTGGAAAATGGTTA 57.692 32.000 0.00 0.00 36.00 2.85
225 237 7.053316 TCACAAGAATGTTCATGGATTTTGT 57.947 32.000 0.00 1.76 37.82 2.83
231 243 5.507149 CGGTTTTCACAAGAATGTTCATGGA 60.507 40.000 0.00 0.00 37.82 3.41
232 244 4.681025 CGGTTTTCACAAGAATGTTCATGG 59.319 41.667 0.00 0.00 37.82 3.66
243 255 6.920758 TGAAATAAATCCACGGTTTTCACAAG 59.079 34.615 0.00 0.00 30.52 3.16
286 298 7.441760 TGGATTTGAGAAAATGGTCACAAATTG 59.558 33.333 12.45 0.00 43.99 2.32
303 316 7.386025 GGATTTGAAAGAAAACCTGGATTTGAG 59.614 37.037 6.67 0.00 0.00 3.02
334 347 8.828688 TTTTAAGAAACGTTCCTTTGGAAAAA 57.171 26.923 4.71 3.45 43.86 1.94
339 352 7.995463 TGAATTTTAAGAAACGTTCCTTTGG 57.005 32.000 4.71 0.00 0.00 3.28
340 353 9.243637 TCATGAATTTTAAGAAACGTTCCTTTG 57.756 29.630 4.71 0.00 0.00 2.77
341 354 9.810545 TTCATGAATTTTAAGAAACGTTCCTTT 57.189 25.926 4.71 1.22 0.00 3.11
380 398 8.853077 AGTTCATGAGTTTCAAACATGATAGA 57.147 30.769 2.41 0.00 45.88 1.98
392 410 9.693157 CACAAATTTGAAAAGTTCATGAGTTTC 57.307 29.630 24.64 16.08 39.84 2.78
395 413 8.872845 GTTCACAAATTTGAAAAGTTCATGAGT 58.127 29.630 24.64 0.00 39.84 3.41
503 543 2.099756 ACTCTGCAAAAACCAGCAACTC 59.900 45.455 0.00 0.00 40.73 3.01
579 626 5.313280 TCTAGTCACTTGCCCCTTAAAAA 57.687 39.130 0.00 0.00 0.00 1.94
676 726 2.505982 GCCTCTCGCATGGGCTAA 59.494 61.111 4.59 0.00 42.31 3.09
677 727 3.916544 CGCCTCTCGCATGGGCTA 61.917 66.667 4.59 0.00 43.29 3.93
754 804 0.179045 CCCGCTTGTTAGGATCCAGG 60.179 60.000 15.82 3.81 0.00 4.45
755 805 0.830648 TCCCGCTTGTTAGGATCCAG 59.169 55.000 15.82 2.78 0.00 3.86
756 806 1.209504 CTTCCCGCTTGTTAGGATCCA 59.790 52.381 15.82 0.00 0.00 3.41
774 827 0.323957 GGGTCGTGGGCTTTCTACTT 59.676 55.000 0.00 0.00 0.00 2.24
890 2977 4.576330 GGAATTCCTCCCAGAAGAAGAA 57.424 45.455 17.73 0.00 38.44 2.52
1096 3183 4.367450 CAGCAGCCATAACTCTTACTCTC 58.633 47.826 0.00 0.00 0.00 3.20
1098 3185 2.869192 GCAGCAGCCATAACTCTTACTC 59.131 50.000 0.00 0.00 33.58 2.59
1102 3189 0.745845 CCGCAGCAGCCATAACTCTT 60.746 55.000 0.00 0.00 37.52 2.85
1986 4075 4.161189 CCTGTGTCAATGGACTCTATGTCT 59.839 45.833 1.02 0.00 44.61 3.41
1994 4083 2.705658 TGACTTCCTGTGTCAATGGACT 59.294 45.455 1.02 0.00 44.61 3.85
1995 4084 3.070018 CTGACTTCCTGTGTCAATGGAC 58.930 50.000 0.00 0.00 42.85 4.02
1996 4085 2.550855 GCTGACTTCCTGTGTCAATGGA 60.551 50.000 0.00 0.00 42.85 3.41
1997 4086 1.808945 GCTGACTTCCTGTGTCAATGG 59.191 52.381 0.00 0.00 42.85 3.16
1998 4087 2.497138 TGCTGACTTCCTGTGTCAATG 58.503 47.619 0.00 0.00 42.85 2.82
1999 4088 2.936919 TGCTGACTTCCTGTGTCAAT 57.063 45.000 0.00 0.00 42.85 2.57
2000 4089 2.708216 TTGCTGACTTCCTGTGTCAA 57.292 45.000 0.00 0.00 42.85 3.18
2001 4090 2.708216 TTTGCTGACTTCCTGTGTCA 57.292 45.000 0.00 0.00 41.48 3.58
2002 4091 3.316308 ACATTTTGCTGACTTCCTGTGTC 59.684 43.478 0.00 0.00 35.21 3.67
2003 4092 3.290710 ACATTTTGCTGACTTCCTGTGT 58.709 40.909 0.00 0.00 0.00 3.72
2004 4093 3.607775 CGACATTTTGCTGACTTCCTGTG 60.608 47.826 0.00 0.00 0.00 3.66
2005 4094 2.549754 CGACATTTTGCTGACTTCCTGT 59.450 45.455 0.00 0.00 0.00 4.00
2006 4095 2.807967 TCGACATTTTGCTGACTTCCTG 59.192 45.455 0.00 0.00 0.00 3.86
2007 4096 3.126001 TCGACATTTTGCTGACTTCCT 57.874 42.857 0.00 0.00 0.00 3.36
2008 4097 3.436704 TGATCGACATTTTGCTGACTTCC 59.563 43.478 0.00 0.00 0.00 3.46
2009 4098 4.668576 TGATCGACATTTTGCTGACTTC 57.331 40.909 0.00 0.00 0.00 3.01
2062 4151 3.565902 GGCTTGTTATAGAGAATGGGTGC 59.434 47.826 0.00 0.00 0.00 5.01
2149 4238 2.050350 CGAACTCCCAGCCGACCTA 61.050 63.158 0.00 0.00 0.00 3.08
2156 4245 3.093278 CAATCGCGAACTCCCAGC 58.907 61.111 15.24 0.00 0.00 4.85
2169 4258 6.017109 ACCCTTTGTATTCGACATATGCAATC 60.017 38.462 1.58 0.00 38.07 2.67
2224 4313 4.026310 GCAATTTCAATAGAATGCCGCAAG 60.026 41.667 0.00 0.00 34.97 4.01
2303 4392 4.153117 GCCACTGTGTAGAACTTTGATCAG 59.847 45.833 7.08 0.00 0.00 2.90
2325 4414 1.213799 GGCAAGCAGGCTTAAGTGC 59.786 57.895 6.16 9.47 40.24 4.40
2358 4447 3.137544 ACAGGAACCACATTGTAGTCCAA 59.862 43.478 12.57 0.00 37.49 3.53
2382 4471 9.965824 ATAAAAGGGAGCAAATATACAATTTCG 57.034 29.630 0.00 0.00 0.00 3.46
2388 4477 9.249053 TGTGAAATAAAAGGGAGCAAATATACA 57.751 29.630 0.00 0.00 0.00 2.29
2393 4482 6.427853 GCTTTGTGAAATAAAAGGGAGCAAAT 59.572 34.615 0.00 0.00 34.60 2.32
2397 4486 4.245660 GGCTTTGTGAAATAAAAGGGAGC 58.754 43.478 0.00 0.00 34.60 4.70
2431 4520 3.982424 GACATGCTCGCGGCGTTTG 62.982 63.158 22.90 16.50 45.43 2.93
2436 4525 4.819761 TCCAGACATGCTCGCGGC 62.820 66.667 6.13 9.69 42.22 6.53
2438 4527 1.458445 CATATTCCAGACATGCTCGCG 59.542 52.381 0.00 0.00 0.00 5.87
2471 4565 4.207955 TCATCTTAGACGTCAGTGCCTAT 58.792 43.478 19.50 0.00 0.00 2.57
2505 4599 8.480501 GGGTACTTAGTGTCAAAATATGAGGTA 58.519 37.037 0.00 0.00 39.19 3.08
2506 4600 7.037873 TGGGTACTTAGTGTCAAAATATGAGGT 60.038 37.037 0.00 0.00 39.19 3.85
2508 4602 8.786826 TTGGGTACTTAGTGTCAAAATATGAG 57.213 34.615 0.00 0.00 39.19 2.90
2510 4604 8.621286 GGATTGGGTACTTAGTGTCAAAATATG 58.379 37.037 0.00 0.00 0.00 1.78
2511 4605 8.557450 AGGATTGGGTACTTAGTGTCAAAATAT 58.443 33.333 0.00 0.00 0.00 1.28
2513 4607 6.790319 AGGATTGGGTACTTAGTGTCAAAAT 58.210 36.000 0.00 0.00 0.00 1.82
2576 4675 2.835156 TGTGTAGGGCTTGTATGTGCTA 59.165 45.455 0.00 0.00 0.00 3.49
2617 4716 9.709495 TGCTTCAATTATTTGTTGCTAGAAAAT 57.291 25.926 0.00 0.00 35.15 1.82
2646 4745 1.172812 GCTGCGGGGATTTATGACCC 61.173 60.000 0.00 0.00 44.89 4.46
2668 4767 6.018588 TGTTAAACAAGATAATATCCCACGCG 60.019 38.462 3.53 3.53 0.00 6.01
2741 4871 3.686241 GCTCTCAAAATTTTGAATGGGGC 59.314 43.478 28.49 24.52 45.61 5.80
2766 4896 1.035932 GTACCTGACGGCCTAGCAGA 61.036 60.000 15.42 0.00 0.00 4.26
2775 4905 3.005897 AGCTTGCTATATGTACCTGACGG 59.994 47.826 0.00 0.00 0.00 4.79
2787 4917 4.665833 AACCACGACATAGCTTGCTATA 57.334 40.909 13.91 0.00 0.00 1.31
2828 4962 1.227853 GAACTGGTTCAGGCACGGT 60.228 57.895 8.40 0.00 39.31 4.83
2894 5028 1.528161 GCATCTTGCAGTTGGTTTTGC 59.472 47.619 0.00 0.00 44.26 3.68
2964 5098 2.746904 CACAAACAGGTCGAATGGCATA 59.253 45.455 0.00 0.00 0.00 3.14
3030 5171 3.936203 GGTGTGTCCCAGCCGTCA 61.936 66.667 0.00 0.00 35.48 4.35
3037 5178 2.625790 GCAATGTAAAAGGTGTGTCCCA 59.374 45.455 0.00 0.00 36.75 4.37
3246 5387 9.461312 AAACAAATATAACTCCTAGCATCAACA 57.539 29.630 0.00 0.00 0.00 3.33
4137 6278 8.366359 ACTTTAAGCATAAGGAACCAATCAAT 57.634 30.769 0.00 0.00 0.00 2.57
4266 6407 1.119684 AAGGAACCACAAACCTTGCC 58.880 50.000 0.00 0.00 41.64 4.52
4272 6413 4.565166 GCAGTTTACAAAGGAACCACAAAC 59.435 41.667 0.00 0.00 0.00 2.93
4296 6437 7.615403 AGTCAAACTGATAAGAGAATGCACTA 58.385 34.615 0.00 0.00 0.00 2.74
4352 6495 9.079833 CAAAACAGAAATGCAGGTAAGATTATG 57.920 33.333 0.00 0.00 0.00 1.90
4380 6523 6.007703 TCTCTTTCCAAAACGTGGGAAATAT 58.992 36.000 22.15 0.00 44.96 1.28
4390 6533 3.000082 GGCAACTCTCTTTCCAAAACG 58.000 47.619 0.00 0.00 0.00 3.60
4445 6588 9.846248 AATCTTGCAATCATGTAACTTCTTAAC 57.154 29.630 0.00 0.00 0.00 2.01
4460 6603 3.614092 TCACCCTCAGAATCTTGCAATC 58.386 45.455 0.00 0.00 0.00 2.67
4478 6621 4.023193 CCCACCTTAACAGAACACAATCAC 60.023 45.833 0.00 0.00 0.00 3.06
4493 6636 2.441750 GAGCCACAATATCCCCACCTTA 59.558 50.000 0.00 0.00 0.00 2.69
4501 6644 0.035458 CCTCCCGAGCCACAATATCC 59.965 60.000 0.00 0.00 0.00 2.59
4534 6677 5.043762 ACCCCATACTTTTCCCTCTCAATA 58.956 41.667 0.00 0.00 0.00 1.90
4597 6740 7.612633 GGTAACCATGGAAATAACTTGGTAAGA 59.387 37.037 21.47 0.00 43.21 2.10
4770 6913 6.311690 GGTCATCAGTTTCTCAAGCTACTTAC 59.688 42.308 0.00 0.00 0.00 2.34
4783 7307 7.746475 CGTTTCAATTAGAAGGTCATCAGTTTC 59.254 37.037 0.00 0.00 37.57 2.78
4857 7381 1.956477 AGCAGGACACCAACATGAAAC 59.044 47.619 0.00 0.00 0.00 2.78
4860 7384 1.421268 AGAAGCAGGACACCAACATGA 59.579 47.619 0.00 0.00 0.00 3.07
4861 7385 1.538512 CAGAAGCAGGACACCAACATG 59.461 52.381 0.00 0.00 0.00 3.21
4862 7386 1.901591 CAGAAGCAGGACACCAACAT 58.098 50.000 0.00 0.00 0.00 2.71
4864 7388 0.536006 AGCAGAAGCAGGACACCAAC 60.536 55.000 0.00 0.00 45.49 3.77
4878 7402 3.197549 TGCTTACCATGACATACAGCAGA 59.802 43.478 0.00 0.00 0.00 4.26
4904 7428 9.048446 CAAATCCCTTGCTATTCCATTTTATTG 57.952 33.333 0.00 0.00 0.00 1.90
4905 7429 8.212995 CCAAATCCCTTGCTATTCCATTTTATT 58.787 33.333 0.00 0.00 33.27 1.40
4995 7522 3.515602 AGGTCCTTTGAAGTTGAGCAT 57.484 42.857 0.00 0.00 0.00 3.79
5010 7537 9.503399 CCCAAGTAAGTATCAATAAATAGGTCC 57.497 37.037 0.00 0.00 0.00 4.46
5026 7553 5.869649 AAAGTTGCATTTCCCAAGTAAGT 57.130 34.783 0.00 0.00 0.00 2.24
5053 8634 6.363626 GTCGATATGTACAACCTGCTGATTAG 59.636 42.308 0.00 0.00 0.00 1.73
5174 8756 4.984161 CAGGTGTCATGAACAAACCAAATC 59.016 41.667 16.27 0.00 40.31 2.17
5246 8828 7.040409 ACACACAAAAATATCTCCTCAGGAAAC 60.040 37.037 0.00 0.00 0.00 2.78
5267 8849 6.367969 CACAATACCTAACCTCTAACACACAC 59.632 42.308 0.00 0.00 0.00 3.82
5269 8851 6.461640 ACACAATACCTAACCTCTAACACAC 58.538 40.000 0.00 0.00 0.00 3.82
5270 8852 6.675413 ACACAATACCTAACCTCTAACACA 57.325 37.500 0.00 0.00 0.00 3.72
5275 8857 6.921486 TGTCAACACAATACCTAACCTCTA 57.079 37.500 0.00 0.00 0.00 2.43
5276 8858 5.818678 TGTCAACACAATACCTAACCTCT 57.181 39.130 0.00 0.00 0.00 3.69
5311 8894 5.279156 GCATTGGACAGGATCTGAAAAACTT 60.279 40.000 1.59 0.00 35.18 2.66
5314 8897 4.410099 AGCATTGGACAGGATCTGAAAAA 58.590 39.130 1.59 0.00 35.18 1.94
5318 8901 3.776969 ACTTAGCATTGGACAGGATCTGA 59.223 43.478 1.59 0.00 35.18 3.27
5344 8927 0.685097 GCTCAACCAGACCTACACCA 59.315 55.000 0.00 0.00 0.00 4.17
5346 8929 0.977395 AGGCTCAACCAGACCTACAC 59.023 55.000 0.00 0.00 43.14 2.90
5399 8997 3.807622 TGTCGAAAGCTTTAGGTGTTGAG 59.192 43.478 12.68 0.00 0.00 3.02
5400 8998 3.799366 TGTCGAAAGCTTTAGGTGTTGA 58.201 40.909 12.68 0.00 0.00 3.18
5401 8999 3.807622 TCTGTCGAAAGCTTTAGGTGTTG 59.192 43.478 12.68 2.67 0.00 3.33
5402 9000 4.058817 CTCTGTCGAAAGCTTTAGGTGTT 58.941 43.478 12.68 0.00 0.00 3.32
5403 9001 3.069729 ACTCTGTCGAAAGCTTTAGGTGT 59.930 43.478 12.68 6.15 0.00 4.16
5404 9002 3.654414 ACTCTGTCGAAAGCTTTAGGTG 58.346 45.455 12.68 6.28 0.00 4.00
5405 9003 4.058817 CAACTCTGTCGAAAGCTTTAGGT 58.941 43.478 12.68 0.00 0.00 3.08
5406 9004 3.433615 CCAACTCTGTCGAAAGCTTTAGG 59.566 47.826 12.68 7.53 0.00 2.69
5416 9014 0.950555 GCATGCACCAACTCTGTCGA 60.951 55.000 14.21 0.00 0.00 4.20
5417 9015 1.229975 TGCATGCACCAACTCTGTCG 61.230 55.000 18.46 0.00 0.00 4.35
5461 10235 4.263435 ACGGTTCGGCATTTAGGATAAAA 58.737 39.130 0.00 0.00 0.00 1.52
5468 10242 2.159142 AGGACTACGGTTCGGCATTTAG 60.159 50.000 0.00 0.00 0.00 1.85
5475 10249 3.413522 GAACAGGACTACGGTTCGG 57.586 57.895 0.00 0.00 42.73 4.30
5485 10259 9.817809 TTACAATATCTCAATAGTGAACAGGAC 57.182 33.333 0.00 0.00 37.01 3.85
5516 10290 7.283127 GGTTGAGAGAATATTAGGATTGTGCAA 59.717 37.037 0.00 0.00 0.00 4.08
5522 10296 7.841282 TCTCGGTTGAGAGAATATTAGGATT 57.159 36.000 0.00 0.00 46.25 3.01
5557 10331 5.207033 GCAGGAACATTTTTGATTTGTTGC 58.793 37.500 0.00 0.00 40.64 4.17
5558 10332 6.360844 TGCAGGAACATTTTTGATTTGTTG 57.639 33.333 0.00 0.00 33.92 3.33
5559 10333 6.598850 AGTTGCAGGAACATTTTTGATTTGTT 59.401 30.769 7.64 0.00 36.98 2.83
5560 10334 6.114767 AGTTGCAGGAACATTTTTGATTTGT 58.885 32.000 7.64 0.00 36.98 2.83
5561 10335 6.607735 AGTTGCAGGAACATTTTTGATTTG 57.392 33.333 7.64 0.00 36.98 2.32
5563 10337 7.628769 AAAAGTTGCAGGAACATTTTTGATT 57.371 28.000 7.64 0.00 32.79 2.57
5565 10339 9.255304 GTATAAAAGTTGCAGGAACATTTTTGA 57.745 29.630 12.44 0.00 36.91 2.69
5566 10340 9.260002 AGTATAAAAGTTGCAGGAACATTTTTG 57.740 29.630 12.44 0.00 36.91 2.44
5567 10341 9.260002 CAGTATAAAAGTTGCAGGAACATTTTT 57.740 29.630 12.44 10.52 36.91 1.94
5568 10342 8.637986 TCAGTATAAAAGTTGCAGGAACATTTT 58.362 29.630 12.44 13.74 36.91 1.82
5597 10371 7.379750 AGAGACTGAAATATTATTAGTCGCCC 58.620 38.462 18.11 12.63 41.86 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.