Multiple sequence alignment - TraesCS2B01G347500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G347500 chr2B 100.000 3645 0 0 1 3645 494269119 494265475 0.000000e+00 6732
1 TraesCS2B01G347500 chr2A 96.167 3626 91 19 1 3598 568289506 568285901 0.000000e+00 5882
2 TraesCS2B01G347500 chr2D 96.780 2050 42 10 1571 3598 421796863 421794816 0.000000e+00 3398
3 TraesCS2B01G347500 chr2D 94.290 1506 67 12 4 1503 421798587 421797095 0.000000e+00 2287
4 TraesCS2B01G347500 chr3B 95.652 69 3 0 3577 3645 694098825 694098893 1.070000e-20 111
5 TraesCS2B01G347500 chr6B 91.358 81 4 2 3567 3645 135069452 135069531 1.380000e-19 108
6 TraesCS2B01G347500 chr6B 90.123 81 5 2 3567 3645 229504332 229504411 6.440000e-18 102
7 TraesCS2B01G347500 chr5A 91.358 81 4 2 3567 3645 630028431 630028510 1.380000e-19 108
8 TraesCS2B01G347500 chrUn 90.123 81 5 2 3567 3645 40943103 40943182 6.440000e-18 102
9 TraesCS2B01G347500 chr5B 90.123 81 5 2 3567 3645 181041141 181041220 6.440000e-18 102
10 TraesCS2B01G347500 chr1B 90.123 81 5 2 3567 3645 120846116 120846037 6.440000e-18 102
11 TraesCS2B01G347500 chr1B 90.123 81 5 2 3567 3645 126779692 126779771 6.440000e-18 102
12 TraesCS2B01G347500 chr1B 90.123 81 5 2 3567 3645 277694069 277693990 6.440000e-18 102


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G347500 chr2B 494265475 494269119 3644 True 6732.0 6732 100.000 1 3645 1 chr2B.!!$R1 3644
1 TraesCS2B01G347500 chr2A 568285901 568289506 3605 True 5882.0 5882 96.167 1 3598 1 chr2A.!!$R1 3597
2 TraesCS2B01G347500 chr2D 421794816 421798587 3771 True 2842.5 3398 95.535 4 3598 2 chr2D.!!$R1 3594

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
802 811 1.191489 TGATGCCGTCTTCTGGTCCA 61.191 55.0 0.00 0.0 0.00 4.02 F
1058 1067 0.611714 TCCTTTCTACCCGTGCCTTC 59.388 55.0 0.00 0.0 0.00 3.46 F
1059 1068 0.613777 CCTTTCTACCCGTGCCTTCT 59.386 55.0 0.00 0.0 0.00 2.85 F
2131 2316 0.750249 TCGCAGACTTTGGACTGTCA 59.250 50.0 10.38 0.0 37.51 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2110 2295 0.601311 ACAGTCCAAAGTCTGCGAGC 60.601 55.000 0.00 0.00 33.03 5.03 R
2557 2746 0.689623 CCTTCTCCAGCCTTGACACT 59.310 55.000 0.00 0.00 0.00 3.55 R
2569 2758 3.181434 TGGAGATCTCTAGAGCCTTCTCC 60.181 52.174 33.16 33.16 42.57 3.71 R
3598 3807 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 1.731709 TGCGAATTTGATGACCTCACG 59.268 47.619 0.00 0.00 32.17 4.35
53 55 4.261801 ACATGTCTTATCCTTGGAAACCG 58.738 43.478 0.00 0.00 0.00 4.44
91 93 4.201832 TGCACGTAACTTACAAAACAGTGG 60.202 41.667 0.00 0.00 0.00 4.00
152 154 3.000727 ACTAAGTGCCGATTGTGCTAAC 58.999 45.455 0.00 0.00 0.00 2.34
196 198 4.532834 AGCTTTTGGAGTGGTTCTGTTTA 58.467 39.130 0.00 0.00 0.00 2.01
308 316 8.708742 CGAATTAATCAACACAAGAACAGACTA 58.291 33.333 0.00 0.00 0.00 2.59
312 320 4.116961 TCAACACAAGAACAGACTAACCG 58.883 43.478 0.00 0.00 0.00 4.44
324 332 3.855950 CAGACTAACCGGTAGTAAAAGCG 59.144 47.826 8.00 0.00 43.45 4.68
400 408 6.440354 AGTTTACCAAGCATTATACCCCAAT 58.560 36.000 0.00 0.00 0.00 3.16
434 442 2.544486 GCTCCAGTTGTTGCTCTTTTGG 60.544 50.000 0.00 0.00 0.00 3.28
439 447 3.068590 CAGTTGTTGCTCTTTTGGTGGAT 59.931 43.478 0.00 0.00 0.00 3.41
482 490 1.221414 GGCTCATATGAAGCCGTCAC 58.779 55.000 22.28 7.22 39.72 3.67
601 609 3.149196 CTGCTATGCCCGAACCAATATT 58.851 45.455 0.00 0.00 0.00 1.28
655 663 7.879160 AGCAAAGAAGCAATCCAAATATTCAAA 59.121 29.630 0.00 0.00 36.85 2.69
774 782 3.462483 TGAACCAGTGACGTAACATGT 57.538 42.857 5.68 0.00 0.00 3.21
802 811 1.191489 TGATGCCGTCTTCTGGTCCA 61.191 55.000 0.00 0.00 0.00 4.02
909 918 6.869695 TCATTGCTAATAACGACTGGTTAGA 58.130 36.000 0.00 0.00 43.96 2.10
985 994 1.956477 CAACCTTGTGTTCTTCCCAGG 59.044 52.381 0.00 0.00 34.00 4.45
1019 1028 6.894654 AGCTAGATGCATACAGGTATGTCTAT 59.105 38.462 17.92 11.44 43.57 1.98
1058 1067 0.611714 TCCTTTCTACCCGTGCCTTC 59.388 55.000 0.00 0.00 0.00 3.46
1059 1068 0.613777 CCTTTCTACCCGTGCCTTCT 59.386 55.000 0.00 0.00 0.00 2.85
1060 1069 1.003233 CCTTTCTACCCGTGCCTTCTT 59.997 52.381 0.00 0.00 0.00 2.52
1133 1142 1.809619 CGTCGCGGTGGTGATCATT 60.810 57.895 6.13 0.00 34.71 2.57
1144 1153 2.036992 TGGTGATCATTGGGTTTGTTGC 59.963 45.455 0.00 0.00 0.00 4.17
1235 1244 4.393062 ACAACTCAGTAATCGAATTGCAGG 59.607 41.667 0.00 0.00 0.00 4.85
1348 1357 1.202855 ACCTGCAAGCAGATGTCAGTT 60.203 47.619 22.76 0.00 46.30 3.16
1396 1405 9.313118 GAAAACTTACACCTTTCAAACATCATT 57.687 29.630 0.00 0.00 0.00 2.57
1419 1428 1.406539 GCAGGGAATTGCAGGTACATG 59.593 52.381 2.43 2.43 43.53 3.21
1439 1450 5.069119 ACATGACAATACTAGCCGATTCAGA 59.931 40.000 0.00 0.00 0.00 3.27
1441 1452 6.161855 TGACAATACTAGCCGATTCAGAAT 57.838 37.500 0.00 0.00 0.00 2.40
2055 2240 4.863689 TGCGAATTCAAGTAATGCCAATTG 59.136 37.500 6.22 0.00 0.00 2.32
2110 2295 1.986882 GGGTTGATATGGAGCCCAAG 58.013 55.000 0.00 0.00 36.95 3.61
2131 2316 0.750249 TCGCAGACTTTGGACTGTCA 59.250 50.000 10.38 0.00 37.51 3.58
2488 2677 2.971915 CGAATACTCGGTAGACGCATTC 59.028 50.000 0.00 0.00 43.86 2.67
2489 2678 3.547413 CGAATACTCGGTAGACGCATTCA 60.547 47.826 0.00 0.00 43.86 2.57
2569 2758 2.072298 GAGCAAGTAGTGTCAAGGCTG 58.928 52.381 0.00 0.00 0.00 4.85
2646 2835 2.301870 TGGTCGAGTCCTTTGCATAGTT 59.698 45.455 3.39 0.00 0.00 2.24
2837 3029 9.174166 AGTAATTAATGGAGGTAATGTCAACAC 57.826 33.333 0.00 0.00 0.00 3.32
3134 3343 5.474532 TCTGCAGAAATGAGTAGCAAAACAT 59.525 36.000 15.67 0.00 34.45 2.71
3543 3752 6.204882 AGTCAACAAGTATAGACCAACAAAGC 59.795 38.462 0.00 0.00 0.00 3.51
3598 3807 5.741011 TGTACTCCCTCCATTCACAAATAC 58.259 41.667 0.00 0.00 0.00 1.89
3599 3808 5.487488 TGTACTCCCTCCATTCACAAATACT 59.513 40.000 0.00 0.00 0.00 2.12
3600 3809 5.104259 ACTCCCTCCATTCACAAATACTC 57.896 43.478 0.00 0.00 0.00 2.59
3601 3810 4.080299 ACTCCCTCCATTCACAAATACTCC 60.080 45.833 0.00 0.00 0.00 3.85
3602 3811 3.202151 TCCCTCCATTCACAAATACTCCC 59.798 47.826 0.00 0.00 0.00 4.30
3603 3812 3.203040 CCCTCCATTCACAAATACTCCCT 59.797 47.826 0.00 0.00 0.00 4.20
3604 3813 4.455606 CCTCCATTCACAAATACTCCCTC 58.544 47.826 0.00 0.00 0.00 4.30
3605 3814 4.455606 CTCCATTCACAAATACTCCCTCC 58.544 47.826 0.00 0.00 0.00 4.30
3606 3815 3.118408 TCCATTCACAAATACTCCCTCCG 60.118 47.826 0.00 0.00 0.00 4.63
3607 3816 3.370527 CCATTCACAAATACTCCCTCCGT 60.371 47.826 0.00 0.00 0.00 4.69
3608 3817 4.261801 CATTCACAAATACTCCCTCCGTT 58.738 43.478 0.00 0.00 0.00 4.44
3609 3818 3.604875 TCACAAATACTCCCTCCGTTC 57.395 47.619 0.00 0.00 0.00 3.95
3610 3819 2.094390 TCACAAATACTCCCTCCGTTCG 60.094 50.000 0.00 0.00 0.00 3.95
3611 3820 1.206371 ACAAATACTCCCTCCGTTCGG 59.794 52.381 4.74 4.74 0.00 4.30
3612 3821 1.479323 CAAATACTCCCTCCGTTCGGA 59.521 52.381 13.34 13.34 0.00 4.55
3613 3822 1.856629 AATACTCCCTCCGTTCGGAA 58.143 50.000 14.79 0.00 33.41 4.30
3614 3823 2.083628 ATACTCCCTCCGTTCGGAAT 57.916 50.000 14.79 2.14 33.41 3.01
3615 3824 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
3616 3825 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
3617 3826 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
3618 3827 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
3619 3828 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
3620 3829 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
3621 3830 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
3622 3831 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
3623 3832 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
3624 3833 3.841643 TCCGTTCGGAATTACTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
3625 3834 2.597305 CCGTTCGGAATTACTTGTCTCG 59.403 50.000 5.19 0.00 0.00 4.04
3626 3835 2.597305 CGTTCGGAATTACTTGTCTCGG 59.403 50.000 0.00 0.00 0.00 4.63
3627 3836 3.671433 CGTTCGGAATTACTTGTCTCGGA 60.671 47.826 0.00 0.00 0.00 4.55
3628 3837 4.240096 GTTCGGAATTACTTGTCTCGGAA 58.760 43.478 0.00 0.00 0.00 4.30
3629 3838 4.524316 TCGGAATTACTTGTCTCGGAAA 57.476 40.909 0.00 0.00 0.00 3.13
3630 3839 5.080969 TCGGAATTACTTGTCTCGGAAAT 57.919 39.130 0.00 0.00 0.00 2.17
3631 3840 4.868171 TCGGAATTACTTGTCTCGGAAATG 59.132 41.667 0.00 0.00 0.00 2.32
3632 3841 4.034048 CGGAATTACTTGTCTCGGAAATGG 59.966 45.833 0.00 0.00 0.00 3.16
3633 3842 5.183228 GGAATTACTTGTCTCGGAAATGGA 58.817 41.667 0.00 0.00 0.00 3.41
3634 3843 5.823045 GGAATTACTTGTCTCGGAAATGGAT 59.177 40.000 0.00 0.00 0.00 3.41
3635 3844 6.238484 GGAATTACTTGTCTCGGAAATGGATG 60.238 42.308 0.00 0.00 0.00 3.51
3636 3845 3.703001 ACTTGTCTCGGAAATGGATGT 57.297 42.857 0.00 0.00 0.00 3.06
3637 3846 4.819105 ACTTGTCTCGGAAATGGATGTA 57.181 40.909 0.00 0.00 0.00 2.29
3638 3847 5.359194 ACTTGTCTCGGAAATGGATGTAT 57.641 39.130 0.00 0.00 0.00 2.29
3639 3848 5.360591 ACTTGTCTCGGAAATGGATGTATC 58.639 41.667 0.00 0.00 0.00 2.24
3640 3849 5.129485 ACTTGTCTCGGAAATGGATGTATCT 59.871 40.000 0.00 0.00 0.00 1.98
3641 3850 6.323996 ACTTGTCTCGGAAATGGATGTATCTA 59.676 38.462 0.00 0.00 0.00 1.98
3642 3851 6.332735 TGTCTCGGAAATGGATGTATCTAG 57.667 41.667 0.00 0.00 0.00 2.43
3643 3852 6.068670 TGTCTCGGAAATGGATGTATCTAGA 58.931 40.000 0.00 0.00 0.00 2.43
3644 3853 6.549736 TGTCTCGGAAATGGATGTATCTAGAA 59.450 38.462 0.00 0.00 0.00 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 3.745975 TGTCACGTGAGGTCATCAAATTC 59.254 43.478 20.73 2.57 40.43 2.17
13 14 3.401033 TGTCACGTGAGGTCATCAAAT 57.599 42.857 20.73 0.00 40.43 2.32
28 29 5.123979 GGTTTCCAAGGATAAGACATGTCAC 59.876 44.000 27.02 14.47 0.00 3.67
53 55 4.091453 ACGTGCAGGTTACATTAATTGC 57.909 40.909 6.15 1.40 34.07 3.56
91 93 3.801114 AGGTCCACAAAACAAAGAAGC 57.199 42.857 0.00 0.00 0.00 3.86
118 120 4.319766 CGGCACTTAGTTTGCATGGATATC 60.320 45.833 0.00 0.00 42.12 1.63
152 154 1.662629 CAAGCTGTAAGAGTCCGCATG 59.337 52.381 0.00 0.00 34.07 4.06
196 198 6.534634 ACACTCCAAAAGCTACTGTAGAAAT 58.465 36.000 18.64 0.75 0.00 2.17
308 316 3.062042 CAGTTCGCTTTTACTACCGGTT 58.938 45.455 15.04 0.00 0.00 4.44
312 320 4.756868 CGATCAGTTCGCTTTTACTACC 57.243 45.455 0.00 0.00 41.69 3.18
324 332 2.688507 TCTGTCCTTTGCGATCAGTTC 58.311 47.619 0.00 0.00 0.00 3.01
400 408 1.561076 ACTGGAGCAAGACATATGGCA 59.439 47.619 12.11 0.00 0.00 4.92
434 442 8.466798 ACTATAAAACAATAAGGTTGCATCCAC 58.533 33.333 16.12 0.00 0.00 4.02
439 447 7.600752 GCCAAACTATAAAACAATAAGGTTGCA 59.399 33.333 0.00 0.00 0.00 4.08
601 609 2.730524 TTGCGATGGCGGAGATCCA 61.731 57.895 0.00 0.00 44.10 3.41
655 663 8.157476 AGTATCTTCGGCTGTGGAAAATATATT 58.843 33.333 0.00 0.00 0.00 1.28
749 757 3.002862 TGTTACGTCACTGGTTCAATTGC 59.997 43.478 0.00 0.00 0.00 3.56
750 758 4.804608 TGTTACGTCACTGGTTCAATTG 57.195 40.909 0.00 0.00 0.00 2.32
751 759 4.819630 ACATGTTACGTCACTGGTTCAATT 59.180 37.500 0.00 0.00 0.00 2.32
752 760 4.213270 CACATGTTACGTCACTGGTTCAAT 59.787 41.667 0.00 0.00 0.00 2.57
753 761 3.558006 CACATGTTACGTCACTGGTTCAA 59.442 43.478 0.00 0.00 0.00 2.69
754 762 3.127589 CACATGTTACGTCACTGGTTCA 58.872 45.455 0.00 0.00 0.00 3.18
774 782 0.969149 AGACGGCATCAACTGAGTCA 59.031 50.000 0.00 0.00 36.86 3.41
802 811 4.798682 AGGAATCGGGCCGGGTCT 62.799 66.667 27.98 15.39 0.00 3.85
909 918 6.073314 AGCAAATTAATATCATGGCCACTCT 58.927 36.000 8.16 0.00 0.00 3.24
985 994 0.740868 TGCATCTAGCTGTGGAACGC 60.741 55.000 0.00 0.78 45.94 4.84
1019 1028 1.755200 AGGGGAAAAGGCAGGTAAGA 58.245 50.000 0.00 0.00 0.00 2.10
1058 1067 6.072064 ACTCTCAGAAGGCAATGAATTTCAAG 60.072 38.462 2.68 0.82 0.00 3.02
1059 1068 5.771666 ACTCTCAGAAGGCAATGAATTTCAA 59.228 36.000 2.68 0.00 0.00 2.69
1060 1069 5.319453 ACTCTCAGAAGGCAATGAATTTCA 58.681 37.500 0.75 0.75 0.00 2.69
1123 1132 2.036992 GCAACAAACCCAATGATCACCA 59.963 45.455 0.00 0.00 0.00 4.17
1144 1153 2.947652 CTCCTGATGTGGCAGTAAATGG 59.052 50.000 0.00 0.00 34.06 3.16
1235 1244 3.146847 ACCAAGTAAAAGCTACCAGCAC 58.853 45.455 0.38 0.00 45.56 4.40
1348 1357 6.144078 TCAGTTGCAGCGTATATCTCTTTA 57.856 37.500 0.00 0.00 0.00 1.85
1396 1405 1.505151 TACCTGCAATTCCCTGCCCA 61.505 55.000 0.00 0.00 41.90 5.36
1419 1428 8.589335 TTTATTCTGAATCGGCTAGTATTGTC 57.411 34.615 6.10 0.00 0.00 3.18
1865 2050 4.523943 TCCTTCCCTGTCATCAAATTGTTG 59.476 41.667 0.00 0.00 35.95 3.33
2110 2295 0.601311 ACAGTCCAAAGTCTGCGAGC 60.601 55.000 0.00 0.00 33.03 5.03
2116 2301 3.706594 TGACTCTTGACAGTCCAAAGTCT 59.293 43.478 19.30 2.23 42.04 3.24
2131 2316 2.025155 ACGCCTATGTCGATGACTCTT 58.975 47.619 0.00 0.00 33.15 2.85
2347 2534 3.121944 CAGTTGATCGTTTCGTTCCAGAG 59.878 47.826 0.00 0.00 0.00 3.35
2488 2677 1.132643 GCAAGCTTCAGGCAGAGATTG 59.867 52.381 0.00 7.95 44.79 2.67
2489 2678 1.004511 AGCAAGCTTCAGGCAGAGATT 59.995 47.619 9.64 0.00 44.79 2.40
2557 2746 0.689623 CCTTCTCCAGCCTTGACACT 59.310 55.000 0.00 0.00 0.00 3.55
2569 2758 3.181434 TGGAGATCTCTAGAGCCTTCTCC 60.181 52.174 33.16 33.16 42.57 3.71
2837 3029 3.885484 AGTCAAGTGTCAAATTCAGCG 57.115 42.857 0.00 0.00 0.00 5.18
3134 3343 8.713971 AGTTTGATAATGTCTGATATGGTGGTA 58.286 33.333 0.00 0.00 0.00 3.25
3174 3383 7.437862 TGAACCAAAAAGATTACAATGAAGCAC 59.562 33.333 0.00 0.00 0.00 4.40
3543 3752 4.494350 GCACTATGCATAACCCTGATTG 57.506 45.455 8.00 0.00 44.26 2.67
3598 3807 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
3599 3808 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
3600 3809 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
3601 3810 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
3602 3811 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
3603 3812 3.671433 CGAGACAAGTAATTCCGAACGGA 60.671 47.826 12.04 12.04 43.52 4.69
3604 3813 2.597305 CGAGACAAGTAATTCCGAACGG 59.403 50.000 6.94 6.94 0.00 4.44
3605 3814 2.597305 CCGAGACAAGTAATTCCGAACG 59.403 50.000 0.00 0.00 0.00 3.95
3606 3815 3.841643 TCCGAGACAAGTAATTCCGAAC 58.158 45.455 0.00 0.00 0.00 3.95
3607 3816 4.524316 TTCCGAGACAAGTAATTCCGAA 57.476 40.909 0.00 0.00 0.00 4.30
3608 3817 4.524316 TTTCCGAGACAAGTAATTCCGA 57.476 40.909 0.00 0.00 0.00 4.55
3609 3818 4.034048 CCATTTCCGAGACAAGTAATTCCG 59.966 45.833 0.00 0.00 0.00 4.30
3610 3819 5.183228 TCCATTTCCGAGACAAGTAATTCC 58.817 41.667 0.00 0.00 0.00 3.01
3611 3820 6.316390 ACATCCATTTCCGAGACAAGTAATTC 59.684 38.462 0.00 0.00 0.00 2.17
3612 3821 6.180472 ACATCCATTTCCGAGACAAGTAATT 58.820 36.000 0.00 0.00 0.00 1.40
3613 3822 5.745227 ACATCCATTTCCGAGACAAGTAAT 58.255 37.500 0.00 0.00 0.00 1.89
3614 3823 5.160607 ACATCCATTTCCGAGACAAGTAA 57.839 39.130 0.00 0.00 0.00 2.24
3615 3824 4.819105 ACATCCATTTCCGAGACAAGTA 57.181 40.909 0.00 0.00 0.00 2.24
3616 3825 3.703001 ACATCCATTTCCGAGACAAGT 57.297 42.857 0.00 0.00 0.00 3.16
3617 3826 5.605534 AGATACATCCATTTCCGAGACAAG 58.394 41.667 0.00 0.00 0.00 3.16
3618 3827 5.614324 AGATACATCCATTTCCGAGACAA 57.386 39.130 0.00 0.00 0.00 3.18
3619 3828 6.068670 TCTAGATACATCCATTTCCGAGACA 58.931 40.000 0.00 0.00 0.00 3.41
3620 3829 6.576662 TCTAGATACATCCATTTCCGAGAC 57.423 41.667 0.00 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.