Multiple sequence alignment - TraesCS2B01G347400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G347400 chr2B 100.000 4014 0 0 1 4014 494262952 494266965 0.000000e+00 7413.0
1 TraesCS2B01G347400 chr2B 85.791 373 37 12 2 364 11202368 11202734 8.140000e-102 381.0
2 TraesCS2B01G347400 chr2B 94.615 130 7 0 2462 2591 100347407 100347278 6.800000e-48 202.0
3 TraesCS2B01G347400 chr2B 95.000 100 4 1 2131 2230 650285738 650285640 5.370000e-34 156.0
4 TraesCS2B01G347400 chr2A 96.922 1462 26 7 2571 4014 568285901 568287361 0.000000e+00 2433.0
5 TraesCS2B01G347400 chr2A 94.883 1153 41 10 997 2135 568284497 568285645 0.000000e+00 1786.0
6 TraesCS2B01G347400 chr2A 82.876 619 35 33 385 959 568283832 568284423 1.300000e-134 490.0
7 TraesCS2B01G347400 chr2A 97.628 253 3 3 2218 2467 568285650 568285902 7.970000e-117 431.0
8 TraesCS2B01G347400 chr2A 96.739 92 3 0 2129 2220 617636123 617636032 1.930000e-33 154.0
9 TraesCS2B01G347400 chr2D 96.314 1465 31 9 2571 4014 421794816 421796278 0.000000e+00 2385.0
10 TraesCS2B01G347400 chr2D 89.138 1114 42 30 385 1464 421792748 421793816 0.000000e+00 1314.0
11 TraesCS2B01G347400 chr2D 94.651 673 32 3 1464 2135 421793896 421794565 0.000000e+00 1040.0
12 TraesCS2B01G347400 chr2D 92.453 371 23 5 1 367 437917283 437916914 3.550000e-145 525.0
13 TraesCS2B01G347400 chr2D 89.730 370 35 2 1 367 168399151 168398782 1.690000e-128 470.0
14 TraesCS2B01G347400 chr2D 95.276 254 9 2 2217 2467 421794564 421794817 2.250000e-107 399.0
15 TraesCS2B01G347400 chr2D 90.826 109 8 2 2127 2234 643235816 643235923 1.160000e-30 145.0
16 TraesCS2B01G347400 chr6D 92.683 369 24 2 1 366 68857709 68857341 2.750000e-146 529.0
17 TraesCS2B01G347400 chr6D 92.523 107 6 1 2113 2219 28032544 28032440 6.950000e-33 152.0
18 TraesCS2B01G347400 chr6D 93.069 101 5 2 2134 2234 9406776 9406678 3.230000e-31 147.0
19 TraesCS2B01G347400 chr5D 91.777 377 17 4 1 364 467427156 467427531 2.770000e-141 512.0
20 TraesCS2B01G347400 chr5D 92.632 285 15 3 87 366 429742092 429742375 4.830000e-109 405.0
21 TraesCS2B01G347400 chr7D 88.204 373 28 10 1 364 633385473 633385838 7.970000e-117 431.0
22 TraesCS2B01G347400 chr7D 90.345 145 8 4 2329 2467 454079067 454079211 6.850000e-43 185.0
23 TraesCS2B01G347400 chr7D 94.175 103 4 2 2127 2227 498229830 498229932 5.370000e-34 156.0
24 TraesCS2B01G347400 chr1D 87.131 373 30 11 1 364 299571506 299571143 1.340000e-109 407.0
25 TraesCS2B01G347400 chr4D 92.827 237 15 1 133 367 52767180 52767416 3.840000e-90 342.0
26 TraesCS2B01G347400 chr1A 83.019 371 43 13 2 364 530148338 530147980 6.470000e-83 318.0
27 TraesCS2B01G347400 chr1A 89.744 156 13 3 2435 2589 74605792 74605639 3.160000e-46 196.0
28 TraesCS2B01G347400 chr3B 90.566 159 13 2 2435 2592 694098982 694098825 4.070000e-50 209.0
29 TraesCS2B01G347400 chr3B 90.000 140 8 4 2332 2467 383704486 383704349 4.120000e-40 176.0
30 TraesCS2B01G347400 chr6B 98.305 118 2 0 2463 2580 218024959 218024842 1.460000e-49 207.0
31 TraesCS2B01G347400 chr6B 83.654 208 29 4 2388 2591 333822161 333821955 1.470000e-44 191.0
32 TraesCS2B01G347400 chr6B 83.173 208 30 4 2388 2591 333895578 333895372 6.850000e-43 185.0
33 TraesCS2B01G347400 chr6B 91.045 134 8 2 2338 2467 537553841 537553974 1.150000e-40 178.0
34 TraesCS2B01G347400 chr6B 89.474 114 10 1 2116 2227 48981412 48981525 4.180000e-30 143.0
35 TraesCS2B01G347400 chr4A 88.199 161 17 2 2435 2594 692358246 692358087 1.470000e-44 191.0
36 TraesCS2B01G347400 chr5B 87.349 166 17 3 2429 2591 264286930 264287094 1.900000e-43 187.0
37 TraesCS2B01G347400 chr7A 82.488 217 31 6 2388 2598 37008510 37008295 2.460000e-42 183.0
38 TraesCS2B01G347400 chr4B 90.141 142 8 4 2330 2467 146469210 146469349 3.190000e-41 180.0
39 TraesCS2B01G347400 chr7B 95.960 99 3 1 2130 2227 639796288 639796190 4.150000e-35 159.0
40 TraesCS2B01G347400 chr7B 82.432 74 8 5 2188 2260 512738352 512738283 4.330000e-05 60.2
41 TraesCS2B01G347400 chr1B 95.745 94 4 0 2128 2221 7291981 7292074 6.950000e-33 152.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G347400 chr2B 494262952 494266965 4013 False 7413.0 7413 100.00000 1 4014 1 chr2B.!!$F2 4013
1 TraesCS2B01G347400 chr2A 568283832 568287361 3529 False 1285.0 2433 93.07725 385 4014 4 chr2A.!!$F1 3629
2 TraesCS2B01G347400 chr2D 421792748 421796278 3530 False 1284.5 2385 93.84475 385 4014 4 chr2D.!!$F2 3629

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
363 364 0.036010 CGTCCCATTGGAGTTGCTCT 60.036 55.000 3.62 0.0 42.85 4.09 F
602 608 0.037590 CATGGGTGGACCTTCGGAAA 59.962 55.000 0.00 0.0 41.11 3.13 F
722 751 0.248458 GTGCTGGTGTTCACGGTTTG 60.248 55.000 0.00 0.0 0.00 2.93 F
1501 1699 0.320160 AAAGGCGTCTGTTACCCGTC 60.320 55.000 0.00 0.0 0.00 4.79 F
2493 2696 1.060122 CCGTTCGGAATTACTTGTCGC 59.940 52.381 5.19 0.0 0.00 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1502 1700 0.533951 GTGTGGAGTACTAACGGGGG 59.466 60.000 0.00 0.00 0.0 5.40 R
2473 2676 1.060122 GCGACAAGTAATTCCGAACGG 59.940 52.381 6.94 6.94 0.0 4.44 R
2556 2759 1.206371 ACAAATACTCCCTCCGTTCGG 59.794 52.381 4.74 4.74 0.0 4.30 R
2557 2760 2.094390 TCACAAATACTCCCTCCGTTCG 60.094 50.000 0.00 0.00 0.0 3.95 R
3598 3821 2.072298 GAGCAAGTAGTGTCAAGGCTG 58.928 52.381 0.00 0.00 0.0 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 4.660938 GGACAGGGGCGGTTTGCT 62.661 66.667 0.00 0.00 45.43 3.91
32 33 3.365265 GACAGGGGCGGTTTGCTG 61.365 66.667 0.00 0.00 45.43 4.41
33 34 4.974721 ACAGGGGCGGTTTGCTGG 62.975 66.667 0.00 0.00 45.43 4.85
40 41 3.814268 CGGTTTGCTGGGCGGATG 61.814 66.667 0.00 0.00 0.00 3.51
41 42 2.676471 GGTTTGCTGGGCGGATGT 60.676 61.111 0.00 0.00 0.00 3.06
42 43 2.568090 GTTTGCTGGGCGGATGTG 59.432 61.111 0.00 0.00 0.00 3.21
43 44 1.971167 GTTTGCTGGGCGGATGTGA 60.971 57.895 0.00 0.00 0.00 3.58
44 45 1.228398 TTTGCTGGGCGGATGTGAA 60.228 52.632 0.00 0.00 0.00 3.18
45 46 1.243342 TTTGCTGGGCGGATGTGAAG 61.243 55.000 0.00 0.00 0.00 3.02
46 47 2.825836 GCTGGGCGGATGTGAAGG 60.826 66.667 0.00 0.00 0.00 3.46
47 48 2.825836 CTGGGCGGATGTGAAGGC 60.826 66.667 0.00 0.00 0.00 4.35
48 49 4.776322 TGGGCGGATGTGAAGGCG 62.776 66.667 0.00 0.00 0.00 5.52
53 54 4.778143 GGATGTGAAGGCGGCGGT 62.778 66.667 9.78 0.00 0.00 5.68
54 55 2.185867 GATGTGAAGGCGGCGGTA 59.814 61.111 9.78 0.00 0.00 4.02
55 56 1.883084 GATGTGAAGGCGGCGGTAG 60.883 63.158 9.78 0.00 0.00 3.18
56 57 4.752879 TGTGAAGGCGGCGGTAGC 62.753 66.667 9.78 0.00 44.18 3.58
57 58 4.452733 GTGAAGGCGGCGGTAGCT 62.453 66.667 9.78 0.00 44.37 3.32
64 65 2.105128 CGGCGGTAGCTGGAAGAG 59.895 66.667 0.00 0.00 45.75 2.85
65 66 2.711922 CGGCGGTAGCTGGAAGAGT 61.712 63.158 0.00 0.00 45.75 3.24
66 67 1.142097 GGCGGTAGCTGGAAGAGTC 59.858 63.158 0.00 0.00 44.37 3.36
67 68 1.226717 GCGGTAGCTGGAAGAGTCG 60.227 63.158 0.00 0.00 41.01 4.18
68 69 1.226717 CGGTAGCTGGAAGAGTCGC 60.227 63.158 0.00 0.00 34.07 5.19
69 70 1.142097 GGTAGCTGGAAGAGTCGCC 59.858 63.158 0.00 0.00 34.07 5.54
70 71 1.226717 GTAGCTGGAAGAGTCGCCG 60.227 63.158 0.00 0.00 34.07 6.46
71 72 3.064987 TAGCTGGAAGAGTCGCCGC 62.065 63.158 0.00 11.11 34.07 6.53
72 73 4.742201 GCTGGAAGAGTCGCCGCA 62.742 66.667 12.92 0.00 34.07 5.69
73 74 2.048222 CTGGAAGAGTCGCCGCAA 60.048 61.111 0.00 0.00 34.07 4.85
74 75 1.667830 CTGGAAGAGTCGCCGCAAA 60.668 57.895 0.00 0.00 34.07 3.68
75 76 1.227704 TGGAAGAGTCGCCGCAAAA 60.228 52.632 0.00 0.00 0.00 2.44
76 77 0.816018 TGGAAGAGTCGCCGCAAAAA 60.816 50.000 0.00 0.00 0.00 1.94
77 78 0.521735 GGAAGAGTCGCCGCAAAAAT 59.478 50.000 0.00 0.00 0.00 1.82
78 79 1.606606 GAAGAGTCGCCGCAAAAATG 58.393 50.000 0.00 0.00 0.00 2.32
79 80 0.240945 AAGAGTCGCCGCAAAAATGG 59.759 50.000 0.00 0.00 0.00 3.16
80 81 0.605319 AGAGTCGCCGCAAAAATGGA 60.605 50.000 0.00 0.00 0.00 3.41
81 82 0.454452 GAGTCGCCGCAAAAATGGAC 60.454 55.000 0.00 0.00 0.00 4.02
82 83 1.795962 GTCGCCGCAAAAATGGACG 60.796 57.895 0.00 0.00 0.00 4.79
85 86 2.503809 CCGCAAAAATGGACGGCG 60.504 61.111 4.80 4.80 46.61 6.46
86 87 2.503809 CGCAAAAATGGACGGCGG 60.504 61.111 13.24 0.00 43.63 6.13
87 88 2.809174 GCAAAAATGGACGGCGGC 60.809 61.111 13.24 8.60 0.00 6.53
88 89 2.503809 CAAAAATGGACGGCGGCG 60.504 61.111 31.06 31.06 0.00 6.46
89 90 2.981350 AAAAATGGACGGCGGCGT 60.981 55.556 38.13 38.13 0.00 5.68
90 91 2.973316 AAAAATGGACGGCGGCGTC 61.973 57.895 44.98 44.98 38.09 5.19
108 109 4.452733 GGTGACGGAGAAGGCGGG 62.453 72.222 0.00 0.00 0.00 6.13
109 110 4.452733 GTGACGGAGAAGGCGGGG 62.453 72.222 0.00 0.00 0.00 5.73
125 126 4.660938 GGGGCGAGGGTTGCTTGT 62.661 66.667 0.00 0.00 0.00 3.16
126 127 2.597510 GGGCGAGGGTTGCTTGTT 60.598 61.111 0.00 0.00 0.00 2.83
127 128 2.644992 GGCGAGGGTTGCTTGTTG 59.355 61.111 0.00 0.00 0.00 3.33
128 129 2.644992 GCGAGGGTTGCTTGTTGG 59.355 61.111 0.00 0.00 0.00 3.77
129 130 2.644992 CGAGGGTTGCTTGTTGGC 59.355 61.111 0.00 0.00 0.00 4.52
130 131 2.919494 CGAGGGTTGCTTGTTGGCC 61.919 63.158 0.00 0.00 0.00 5.36
131 132 2.912025 AGGGTTGCTTGTTGGCCG 60.912 61.111 0.00 0.00 0.00 6.13
132 133 3.989787 GGGTTGCTTGTTGGCCGG 61.990 66.667 0.00 0.00 0.00 6.13
133 134 3.989787 GGTTGCTTGTTGGCCGGG 61.990 66.667 2.18 0.00 0.00 5.73
134 135 3.989787 GTTGCTTGTTGGCCGGGG 61.990 66.667 2.18 0.00 0.00 5.73
149 150 3.825623 GGGGGAGGGAGGCCAATG 61.826 72.222 5.01 0.00 0.00 2.82
150 151 3.023735 GGGGAGGGAGGCCAATGT 61.024 66.667 5.01 0.00 0.00 2.71
151 152 2.276740 GGGAGGGAGGCCAATGTG 59.723 66.667 5.01 0.00 0.00 3.21
152 153 2.440980 GGAGGGAGGCCAATGTGC 60.441 66.667 5.01 0.00 0.00 4.57
160 161 2.964978 GCCAATGTGCCACAGACC 59.035 61.111 3.00 0.00 0.00 3.85
161 162 1.902918 GCCAATGTGCCACAGACCA 60.903 57.895 3.00 0.00 0.00 4.02
162 163 1.870055 GCCAATGTGCCACAGACCAG 61.870 60.000 3.00 0.00 0.00 4.00
163 164 1.582968 CAATGTGCCACAGACCAGC 59.417 57.895 3.00 0.00 0.00 4.85
164 165 1.968017 AATGTGCCACAGACCAGCG 60.968 57.895 3.00 0.00 0.00 5.18
165 166 3.907260 ATGTGCCACAGACCAGCGG 62.907 63.158 3.00 0.00 0.00 5.52
182 183 4.791069 GGCCCGGGGACAGGAGTA 62.791 72.222 25.28 0.00 0.00 2.59
183 184 3.155167 GCCCGGGGACAGGAGTAG 61.155 72.222 25.28 0.00 0.00 2.57
184 185 2.444140 CCCGGGGACAGGAGTAGG 60.444 72.222 14.71 0.00 0.00 3.18
185 186 3.155167 CCGGGGACAGGAGTAGGC 61.155 72.222 0.00 0.00 0.00 3.93
186 187 3.528370 CGGGGACAGGAGTAGGCG 61.528 72.222 0.00 0.00 0.00 5.52
187 188 2.043248 GGGGACAGGAGTAGGCGA 60.043 66.667 0.00 0.00 0.00 5.54
188 189 2.424733 GGGGACAGGAGTAGGCGAC 61.425 68.421 0.00 0.00 0.00 5.19
189 190 2.424733 GGGACAGGAGTAGGCGACC 61.425 68.421 0.00 0.00 0.00 4.79
190 191 2.772691 GGACAGGAGTAGGCGACCG 61.773 68.421 0.00 0.00 0.00 4.79
191 192 3.412879 GACAGGAGTAGGCGACCGC 62.413 68.421 5.75 5.75 41.06 5.68
192 193 4.554363 CAGGAGTAGGCGACCGCG 62.554 72.222 8.36 0.00 43.06 6.46
229 230 2.395690 CGTCGACGCAAATCAGGC 59.604 61.111 26.59 0.00 0.00 4.85
230 231 2.094659 CGTCGACGCAAATCAGGCT 61.095 57.895 26.59 0.00 0.00 4.58
231 232 1.710339 GTCGACGCAAATCAGGCTC 59.290 57.895 0.00 0.00 0.00 4.70
232 233 1.014044 GTCGACGCAAATCAGGCTCA 61.014 55.000 0.00 0.00 0.00 4.26
233 234 0.320334 TCGACGCAAATCAGGCTCAA 60.320 50.000 0.00 0.00 0.00 3.02
234 235 0.516877 CGACGCAAATCAGGCTCAAA 59.483 50.000 0.00 0.00 0.00 2.69
235 236 1.069296 CGACGCAAATCAGGCTCAAAA 60.069 47.619 0.00 0.00 0.00 2.44
236 237 2.604373 CGACGCAAATCAGGCTCAAAAA 60.604 45.455 0.00 0.00 0.00 1.94
237 238 3.578688 GACGCAAATCAGGCTCAAAAAT 58.421 40.909 0.00 0.00 0.00 1.82
238 239 3.319755 ACGCAAATCAGGCTCAAAAATG 58.680 40.909 0.00 0.00 0.00 2.32
239 240 2.669434 CGCAAATCAGGCTCAAAAATGG 59.331 45.455 0.00 0.00 0.00 3.16
240 241 3.004862 GCAAATCAGGCTCAAAAATGGG 58.995 45.455 0.00 0.00 0.00 4.00
241 242 3.557686 GCAAATCAGGCTCAAAAATGGGT 60.558 43.478 0.00 0.00 0.00 4.51
242 243 4.248058 CAAATCAGGCTCAAAAATGGGTC 58.752 43.478 0.00 0.00 0.00 4.46
243 244 1.533625 TCAGGCTCAAAAATGGGTCG 58.466 50.000 0.00 0.00 0.00 4.79
244 245 0.109132 CAGGCTCAAAAATGGGTCGC 60.109 55.000 0.00 0.00 0.00 5.19
245 246 1.215382 GGCTCAAAAATGGGTCGCC 59.785 57.895 0.00 0.00 0.00 5.54
246 247 1.215382 GCTCAAAAATGGGTCGCCC 59.785 57.895 7.87 7.87 45.71 6.13
257 258 3.039588 GTCGCCCGCAGACGAAAA 61.040 61.111 0.00 0.00 43.93 2.29
258 259 2.280254 TCGCCCGCAGACGAAAAA 60.280 55.556 0.00 0.00 43.93 1.94
259 260 2.127383 CGCCCGCAGACGAAAAAC 60.127 61.111 0.00 0.00 43.93 2.43
261 262 2.600475 GCCCGCAGACGAAAAACGA 61.600 57.895 0.00 0.00 45.77 3.85
262 263 1.935925 CCCGCAGACGAAAAACGAA 59.064 52.632 0.00 0.00 45.77 3.85
263 264 0.383860 CCCGCAGACGAAAAACGAAC 60.384 55.000 0.00 0.00 45.77 3.95
264 265 0.302288 CCGCAGACGAAAAACGAACA 59.698 50.000 0.00 0.00 45.77 3.18
265 266 1.372656 CGCAGACGAAAAACGAACAC 58.627 50.000 0.00 0.00 45.77 3.32
266 267 1.738432 GCAGACGAAAAACGAACACC 58.262 50.000 0.00 0.00 45.77 4.16
267 268 1.596220 GCAGACGAAAAACGAACACCC 60.596 52.381 0.00 0.00 45.77 4.61
268 269 0.932399 AGACGAAAAACGAACACCCG 59.068 50.000 0.00 0.00 45.77 5.28
269 270 0.652071 GACGAAAAACGAACACCCGT 59.348 50.000 0.00 0.00 45.77 5.28
270 271 0.652071 ACGAAAAACGAACACCCGTC 59.348 50.000 0.00 0.00 45.77 4.79
271 272 0.041926 CGAAAAACGAACACCCGTCC 60.042 55.000 0.00 0.00 45.77 4.79
272 273 1.015868 GAAAAACGAACACCCGTCCA 58.984 50.000 0.00 0.00 42.54 4.02
273 274 1.605232 GAAAAACGAACACCCGTCCAT 59.395 47.619 0.00 0.00 42.54 3.41
274 275 1.682740 AAAACGAACACCCGTCCATT 58.317 45.000 0.00 0.00 42.54 3.16
275 276 1.682740 AAACGAACACCCGTCCATTT 58.317 45.000 0.00 0.00 42.54 2.32
276 277 0.948678 AACGAACACCCGTCCATTTG 59.051 50.000 0.00 0.00 42.54 2.32
277 278 0.887387 ACGAACACCCGTCCATTTGG 60.887 55.000 0.00 0.00 38.56 3.28
284 285 3.496131 CGTCCATTTGGGTCGGCG 61.496 66.667 0.00 0.00 43.28 6.46
285 286 3.810896 GTCCATTTGGGTCGGCGC 61.811 66.667 0.00 0.00 38.11 6.53
288 289 3.732892 CATTTGGGTCGGCGCGTT 61.733 61.111 8.43 0.00 0.00 4.84
289 290 3.732892 ATTTGGGTCGGCGCGTTG 61.733 61.111 8.43 0.00 0.00 4.10
302 303 4.398598 CGTTGGGCCGCCTTTTCG 62.399 66.667 9.86 5.96 0.00 3.46
324 325 4.379143 GCGCCGACCCAAACGAAC 62.379 66.667 0.00 0.00 0.00 3.95
325 326 4.067016 CGCCGACCCAAACGAACG 62.067 66.667 0.00 0.00 0.00 3.95
326 327 3.719144 GCCGACCCAAACGAACGG 61.719 66.667 0.00 0.00 45.26 4.44
327 328 3.719144 CCGACCCAAACGAACGGC 61.719 66.667 0.00 0.00 37.32 5.68
328 329 3.719144 CGACCCAAACGAACGGCC 61.719 66.667 0.00 0.00 0.00 6.13
329 330 3.719144 GACCCAAACGAACGGCCG 61.719 66.667 26.86 26.86 0.00 6.13
344 345 3.192922 CCGCGGACGAAATGGGTC 61.193 66.667 24.07 0.00 43.93 4.46
345 346 3.550992 CGCGGACGAAATGGGTCG 61.551 66.667 0.00 0.00 46.54 4.79
359 360 2.854522 GGTCGTCCCATTGGAGTTG 58.145 57.895 3.62 0.00 42.85 3.16
360 361 1.305930 GGTCGTCCCATTGGAGTTGC 61.306 60.000 3.62 0.00 42.85 4.17
361 362 0.321653 GTCGTCCCATTGGAGTTGCT 60.322 55.000 3.62 0.00 42.85 3.91
362 363 0.036388 TCGTCCCATTGGAGTTGCTC 60.036 55.000 3.62 0.00 42.85 4.26
363 364 0.036010 CGTCCCATTGGAGTTGCTCT 60.036 55.000 3.62 0.00 42.85 4.09
364 365 1.611673 CGTCCCATTGGAGTTGCTCTT 60.612 52.381 3.62 0.00 42.85 2.85
365 366 2.354704 CGTCCCATTGGAGTTGCTCTTA 60.355 50.000 3.62 0.00 42.85 2.10
366 367 3.274288 GTCCCATTGGAGTTGCTCTTAG 58.726 50.000 3.62 0.00 42.85 2.18
367 368 2.239654 TCCCATTGGAGTTGCTCTTAGG 59.760 50.000 3.62 0.00 35.03 2.69
368 369 2.239654 CCCATTGGAGTTGCTCTTAGGA 59.760 50.000 3.62 0.00 0.00 2.94
369 370 3.308402 CCCATTGGAGTTGCTCTTAGGAA 60.308 47.826 3.62 0.00 0.00 3.36
370 371 4.335416 CCATTGGAGTTGCTCTTAGGAAA 58.665 43.478 0.00 0.00 0.00 3.13
371 372 4.952335 CCATTGGAGTTGCTCTTAGGAAAT 59.048 41.667 0.00 0.00 0.00 2.17
372 373 6.122277 CCATTGGAGTTGCTCTTAGGAAATA 58.878 40.000 0.00 0.00 0.00 1.40
373 374 6.603201 CCATTGGAGTTGCTCTTAGGAAATAA 59.397 38.462 0.00 0.00 0.00 1.40
374 375 7.122650 CCATTGGAGTTGCTCTTAGGAAATAAA 59.877 37.037 0.00 0.00 0.00 1.40
375 376 8.689972 CATTGGAGTTGCTCTTAGGAAATAAAT 58.310 33.333 0.00 0.00 0.00 1.40
376 377 9.920946 ATTGGAGTTGCTCTTAGGAAATAAATA 57.079 29.630 0.00 0.00 0.00 1.40
377 378 9.747898 TTGGAGTTGCTCTTAGGAAATAAATAA 57.252 29.630 0.00 0.00 0.00 1.40
378 379 9.747898 TGGAGTTGCTCTTAGGAAATAAATAAA 57.252 29.630 0.00 0.00 0.00 1.40
429 433 9.871238 GGACATAAACTGTTGAACTATTCTAGA 57.129 33.333 0.00 0.00 38.54 2.43
434 438 8.834749 AAACTGTTGAACTATTCTAGACTTCC 57.165 34.615 0.00 0.00 0.00 3.46
435 439 6.622549 ACTGTTGAACTATTCTAGACTTCCG 58.377 40.000 0.00 0.00 0.00 4.30
436 440 5.962433 TGTTGAACTATTCTAGACTTCCGG 58.038 41.667 0.00 0.00 0.00 5.14
456 460 3.445857 GGTACTTGTAGAACGATGGCTC 58.554 50.000 0.00 0.00 0.00 4.70
476 480 5.447573 GCTCTCAGACATTTCAACAGTTTC 58.552 41.667 0.00 0.00 0.00 2.78
478 482 6.565623 GCTCTCAGACATTTCAACAGTTTCTC 60.566 42.308 0.00 0.00 0.00 2.87
481 485 7.225538 TCTCAGACATTTCAACAGTTTCTCTTC 59.774 37.037 0.00 0.00 0.00 2.87
482 486 7.050377 TCAGACATTTCAACAGTTTCTCTTCT 58.950 34.615 0.00 0.00 0.00 2.85
483 487 7.554118 TCAGACATTTCAACAGTTTCTCTTCTT 59.446 33.333 0.00 0.00 0.00 2.52
484 488 7.854916 CAGACATTTCAACAGTTTCTCTTCTTC 59.145 37.037 0.00 0.00 0.00 2.87
485 489 7.772757 AGACATTTCAACAGTTTCTCTTCTTCT 59.227 33.333 0.00 0.00 0.00 2.85
486 490 8.964476 ACATTTCAACAGTTTCTCTTCTTCTA 57.036 30.769 0.00 0.00 0.00 2.10
487 491 9.050601 ACATTTCAACAGTTTCTCTTCTTCTAG 57.949 33.333 0.00 0.00 0.00 2.43
488 492 9.265901 CATTTCAACAGTTTCTCTTCTTCTAGA 57.734 33.333 0.00 0.00 0.00 2.43
555 561 3.181501 CCGTTACGTAAGGGACATCGTAA 60.182 47.826 33.35 0.00 42.29 3.18
573 579 3.991318 GCCCCCACATTGGACCCA 61.991 66.667 0.00 0.00 40.96 4.51
602 608 0.037590 CATGGGTGGACCTTCGGAAA 59.962 55.000 0.00 0.00 41.11 3.13
644 661 0.678950 TCACTTGATCCGTGCTCACA 59.321 50.000 7.23 0.00 32.54 3.58
646 663 6.837312 AATCACTTGATCCGTGCTCACACA 62.837 45.833 7.23 0.00 39.24 3.72
656 673 3.662247 GTGCTCACACAACTACCTACT 57.338 47.619 0.00 0.00 46.61 2.57
657 674 4.778534 GTGCTCACACAACTACCTACTA 57.221 45.455 0.00 0.00 46.61 1.82
658 675 4.483311 GTGCTCACACAACTACCTACTAC 58.517 47.826 0.00 0.00 46.61 2.73
659 676 4.217983 GTGCTCACACAACTACCTACTACT 59.782 45.833 0.00 0.00 46.61 2.57
702 731 3.243367 GCAGATGTTTGTTTACCAGTGCA 60.243 43.478 0.00 0.00 0.00 4.57
703 732 4.539870 CAGATGTTTGTTTACCAGTGCAG 58.460 43.478 0.00 0.00 0.00 4.41
704 733 4.036734 CAGATGTTTGTTTACCAGTGCAGT 59.963 41.667 0.00 0.00 0.00 4.40
705 734 3.773860 TGTTTGTTTACCAGTGCAGTG 57.226 42.857 14.95 14.95 0.00 3.66
706 735 2.159310 TGTTTGTTTACCAGTGCAGTGC 60.159 45.455 16.47 8.58 0.00 4.40
722 751 0.248458 GTGCTGGTGTTCACGGTTTG 60.248 55.000 0.00 0.00 0.00 2.93
776 832 1.597663 ACTCGACTCAAACGCCAAAAG 59.402 47.619 0.00 0.00 0.00 2.27
934 1004 1.613520 CGTCTCCTACCTGACCTGACA 60.614 57.143 0.00 0.00 0.00 3.58
1501 1699 0.320160 AAAGGCGTCTGTTACCCGTC 60.320 55.000 0.00 0.00 0.00 4.79
1502 1700 2.125793 GGCGTCTGTTACCCGTCC 60.126 66.667 0.00 0.00 0.00 4.79
1540 1738 5.460646 CACACCACAGTTCAATTTCCATAC 58.539 41.667 0.00 0.00 0.00 2.39
1544 1742 7.094377 ACACCACAGTTCAATTTCCATACATAC 60.094 37.037 0.00 0.00 0.00 2.39
1562 1760 5.880901 ACATACCATTTGTTGTCTTCCTCT 58.119 37.500 0.00 0.00 0.00 3.69
1667 1866 5.434352 CAGCATGCAGAAATAAGCAGTAT 57.566 39.130 21.98 0.00 44.94 2.12
1754 1954 7.331687 CCATTTGTCTGATTTGTTTAATGTCCC 59.668 37.037 0.00 0.00 0.00 4.46
1755 1955 7.595819 TTTGTCTGATTTGTTTAATGTCCCT 57.404 32.000 0.00 0.00 0.00 4.20
1756 1956 7.595819 TTGTCTGATTTGTTTAATGTCCCTT 57.404 32.000 0.00 0.00 0.00 3.95
2033 2233 2.709213 GCTCCTATCAATCCAGATGCC 58.291 52.381 0.00 0.00 0.00 4.40
2057 2257 3.007398 TGTTTGTTGTTGGCCTTCTTTGT 59.993 39.130 3.32 0.00 0.00 2.83
2069 2269 3.858503 GCCTTCTTTGTGTTTGCCTCATC 60.859 47.826 0.00 0.00 0.00 2.92
2085 2285 1.210967 TCATCGGGGGATTTGTGTACC 59.789 52.381 0.00 0.00 0.00 3.34
2160 2360 8.425703 ACTCCCTCTGTAAAGAAATATAAGAGC 58.574 37.037 0.00 0.00 0.00 4.09
2161 2361 7.434492 TCCCTCTGTAAAGAAATATAAGAGCG 58.566 38.462 0.00 0.00 0.00 5.03
2162 2362 7.069578 TCCCTCTGTAAAGAAATATAAGAGCGT 59.930 37.037 0.00 0.00 0.00 5.07
2163 2363 7.711339 CCCTCTGTAAAGAAATATAAGAGCGTT 59.289 37.037 0.00 0.00 0.00 4.84
2164 2364 9.099454 CCTCTGTAAAGAAATATAAGAGCGTTT 57.901 33.333 0.00 0.00 0.00 3.60
2172 2372 9.654663 AAGAAATATAAGAGCGTTTAGAACACT 57.345 29.630 0.00 0.00 0.00 3.55
2179 2379 7.870588 AAGAGCGTTTAGAACACTAAAGTAG 57.129 36.000 0.00 0.00 36.97 2.57
2180 2380 6.979465 AGAGCGTTTAGAACACTAAAGTAGT 58.021 36.000 0.00 0.00 36.97 2.73
2194 2394 7.393841 ACTAAAGTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 37.69 4.09
2195 2395 7.828712 ACTAAAGTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 37.69 2.85
2196 2396 8.954350 ACTAAAGTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 37.69 2.10
2197 2397 9.953697 CTAAAGTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 0.00 1.73
2209 2409 9.241317 TCTAAACGCTCTTATATTTCTTTACGG 57.759 33.333 0.00 0.00 0.00 4.02
2210 2410 9.241317 CTAAACGCTCTTATATTTCTTTACGGA 57.759 33.333 0.00 0.00 0.00 4.69
2211 2411 7.695869 AACGCTCTTATATTTCTTTACGGAG 57.304 36.000 0.00 0.00 0.00 4.63
2212 2412 6.214399 ACGCTCTTATATTTCTTTACGGAGG 58.786 40.000 0.00 0.00 0.00 4.30
2213 2413 5.634020 CGCTCTTATATTTCTTTACGGAGGG 59.366 44.000 0.00 0.00 0.00 4.30
2214 2414 6.516194 CGCTCTTATATTTCTTTACGGAGGGA 60.516 42.308 0.00 0.00 34.63 4.20
2215 2415 6.869388 GCTCTTATATTTCTTTACGGAGGGAG 59.131 42.308 0.00 0.00 0.00 4.30
2216 2416 7.471679 GCTCTTATATTTCTTTACGGAGGGAGT 60.472 40.741 0.00 0.00 0.00 3.85
2443 2646 6.582636 TCATTTCAGTCTGTATGGTCCATAC 58.417 40.000 28.49 28.49 44.74 2.39
2474 2677 6.248569 TCCAAAACATCTTATACTCCCTCC 57.751 41.667 0.00 0.00 0.00 4.30
2475 2678 5.057149 CCAAAACATCTTATACTCCCTCCG 58.943 45.833 0.00 0.00 0.00 4.63
2476 2679 5.396436 CCAAAACATCTTATACTCCCTCCGT 60.396 44.000 0.00 0.00 0.00 4.69
2477 2680 5.952347 AAACATCTTATACTCCCTCCGTT 57.048 39.130 0.00 0.00 0.00 4.44
2478 2681 5.532664 AACATCTTATACTCCCTCCGTTC 57.467 43.478 0.00 0.00 0.00 3.95
2479 2682 3.568853 ACATCTTATACTCCCTCCGTTCG 59.431 47.826 0.00 0.00 0.00 3.95
2480 2683 2.579873 TCTTATACTCCCTCCGTTCGG 58.420 52.381 4.74 4.74 0.00 4.30
2481 2684 2.173356 TCTTATACTCCCTCCGTTCGGA 59.827 50.000 13.34 13.34 0.00 4.55
2482 2685 2.734755 TATACTCCCTCCGTTCGGAA 57.265 50.000 14.79 0.00 33.41 4.30
2483 2686 2.083628 ATACTCCCTCCGTTCGGAAT 57.916 50.000 14.79 2.14 33.41 3.01
2484 2687 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
2485 2688 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
2486 2689 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
2487 2690 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
2488 2691 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
2489 2692 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
2490 2693 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
2491 2694 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
2492 2695 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
2493 2696 1.060122 CCGTTCGGAATTACTTGTCGC 59.940 52.381 5.19 0.00 0.00 5.19
2494 2697 1.722464 CGTTCGGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
2495 2698 2.222508 CGTTCGGAATTACTTGTCGCAG 60.223 50.000 0.00 0.00 0.00 5.18
2496 2699 2.991190 GTTCGGAATTACTTGTCGCAGA 59.009 45.455 0.00 0.00 0.00 4.26
2497 2700 3.306917 TCGGAATTACTTGTCGCAGAA 57.693 42.857 0.00 0.00 39.69 3.02
2498 2701 3.655486 TCGGAATTACTTGTCGCAGAAA 58.345 40.909 0.00 0.00 39.69 2.52
2499 2702 4.250464 TCGGAATTACTTGTCGCAGAAAT 58.750 39.130 0.00 0.00 39.69 2.17
2500 2703 5.412640 TCGGAATTACTTGTCGCAGAAATA 58.587 37.500 0.00 0.00 39.69 1.40
2501 2704 5.518847 TCGGAATTACTTGTCGCAGAAATAG 59.481 40.000 0.00 0.00 39.69 1.73
2502 2705 5.518847 CGGAATTACTTGTCGCAGAAATAGA 59.481 40.000 0.00 0.00 39.69 1.98
2503 2706 6.201044 CGGAATTACTTGTCGCAGAAATAGAT 59.799 38.462 0.00 0.00 39.69 1.98
2504 2707 7.348201 GGAATTACTTGTCGCAGAAATAGATG 58.652 38.462 0.00 0.00 39.69 2.90
2505 2708 7.011482 GGAATTACTTGTCGCAGAAATAGATGT 59.989 37.037 0.00 0.00 39.69 3.06
2506 2709 8.942338 AATTACTTGTCGCAGAAATAGATGTA 57.058 30.769 0.00 0.00 39.69 2.29
2507 2710 9.547753 AATTACTTGTCGCAGAAATAGATGTAT 57.452 29.630 0.00 0.00 39.69 2.29
2508 2711 8.575565 TTACTTGTCGCAGAAATAGATGTATC 57.424 34.615 0.00 0.00 39.69 2.24
2509 2712 6.810911 ACTTGTCGCAGAAATAGATGTATCT 58.189 36.000 0.00 0.00 39.69 1.98
2510 2713 7.941919 ACTTGTCGCAGAAATAGATGTATCTA 58.058 34.615 4.22 4.22 40.45 1.98
2511 2714 8.079203 ACTTGTCGCAGAAATAGATGTATCTAG 58.921 37.037 7.57 0.00 39.84 2.43
2512 2715 7.745620 TGTCGCAGAAATAGATGTATCTAGA 57.254 36.000 7.57 0.00 39.84 2.43
2513 2716 7.585867 TGTCGCAGAAATAGATGTATCTAGAC 58.414 38.462 0.00 7.60 39.84 2.59
2514 2717 6.739100 GTCGCAGAAATAGATGTATCTAGACG 59.261 42.308 0.00 5.27 39.84 4.18
2515 2718 6.427242 TCGCAGAAATAGATGTATCTAGACGT 59.573 38.462 0.00 0.00 42.20 4.34
2516 2719 7.601508 TCGCAGAAATAGATGTATCTAGACGTA 59.398 37.037 0.00 0.00 42.20 3.57
2517 2720 8.391859 CGCAGAAATAGATGTATCTAGACGTAT 58.608 37.037 0.00 0.00 42.20 3.06
2543 2746 9.542462 TTTTAGTTCTAGATACATCCATTTCCG 57.458 33.333 0.00 0.00 0.00 4.30
2544 2747 6.978674 AGTTCTAGATACATCCATTTCCGA 57.021 37.500 0.00 0.00 0.00 4.55
2545 2748 6.987386 AGTTCTAGATACATCCATTTCCGAG 58.013 40.000 0.00 0.00 0.00 4.63
2546 2749 6.778069 AGTTCTAGATACATCCATTTCCGAGA 59.222 38.462 0.00 0.00 0.00 4.04
2547 2750 6.576662 TCTAGATACATCCATTTCCGAGAC 57.423 41.667 0.00 0.00 0.00 3.36
2548 2751 6.068670 TCTAGATACATCCATTTCCGAGACA 58.931 40.000 0.00 0.00 0.00 3.41
2549 2752 5.614324 AGATACATCCATTTCCGAGACAA 57.386 39.130 0.00 0.00 0.00 3.18
2550 2753 5.605534 AGATACATCCATTTCCGAGACAAG 58.394 41.667 0.00 0.00 0.00 3.16
2551 2754 3.703001 ACATCCATTTCCGAGACAAGT 57.297 42.857 0.00 0.00 0.00 3.16
2552 2755 4.819105 ACATCCATTTCCGAGACAAGTA 57.181 40.909 0.00 0.00 0.00 2.24
2553 2756 5.160607 ACATCCATTTCCGAGACAAGTAA 57.839 39.130 0.00 0.00 0.00 2.24
2554 2757 5.745227 ACATCCATTTCCGAGACAAGTAAT 58.255 37.500 0.00 0.00 0.00 1.89
2555 2758 6.180472 ACATCCATTTCCGAGACAAGTAATT 58.820 36.000 0.00 0.00 0.00 1.40
2556 2759 6.316390 ACATCCATTTCCGAGACAAGTAATTC 59.684 38.462 0.00 0.00 0.00 2.17
2557 2760 5.183228 TCCATTTCCGAGACAAGTAATTCC 58.817 41.667 0.00 0.00 0.00 3.01
2558 2761 4.034048 CCATTTCCGAGACAAGTAATTCCG 59.966 45.833 0.00 0.00 0.00 4.30
2559 2762 4.524316 TTTCCGAGACAAGTAATTCCGA 57.476 40.909 0.00 0.00 0.00 4.55
2560 2763 4.524316 TTCCGAGACAAGTAATTCCGAA 57.476 40.909 0.00 0.00 0.00 4.30
2561 2764 3.841643 TCCGAGACAAGTAATTCCGAAC 58.158 45.455 0.00 0.00 0.00 3.95
2562 2765 2.597305 CCGAGACAAGTAATTCCGAACG 59.403 50.000 0.00 0.00 0.00 3.95
2563 2766 2.597305 CGAGACAAGTAATTCCGAACGG 59.403 50.000 6.94 6.94 0.00 4.44
2564 2767 3.671433 CGAGACAAGTAATTCCGAACGGA 60.671 47.826 12.04 12.04 43.52 4.69
2565 2768 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
2566 2769 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
2567 2770 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
2568 2771 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
2569 2772 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
2624 2827 4.494350 GCACTATGCATAACCCTGATTG 57.506 45.455 8.00 0.00 44.26 2.67
2993 3196 7.437862 TGAACCAAAAAGATTACAATGAAGCAC 59.562 33.333 0.00 0.00 0.00 4.40
3033 3236 8.713971 AGTTTGATAATGTCTGATATGGTGGTA 58.286 33.333 0.00 0.00 0.00 3.25
3330 3550 3.885484 AGTCAAGTGTCAAATTCAGCG 57.115 42.857 0.00 0.00 0.00 5.18
3598 3821 3.181434 TGGAGATCTCTAGAGCCTTCTCC 60.181 52.174 33.16 33.16 42.57 3.71
3610 3833 0.689623 CCTTCTCCAGCCTTGACACT 59.310 55.000 0.00 0.00 0.00 3.55
3678 3901 1.004511 AGCAAGCTTCAGGCAGAGATT 59.995 47.619 9.64 0.00 44.79 2.40
3679 3902 1.132643 GCAAGCTTCAGGCAGAGATTG 59.867 52.381 0.00 7.95 44.79 2.67
3820 4045 3.121944 CAGTTGATCGTTTCGTTCCAGAG 59.878 47.826 0.00 0.00 0.00 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 4.660938 AGCAAACCGCCCCTGTCC 62.661 66.667 0.00 0.00 44.04 4.02
15 16 3.365265 CAGCAAACCGCCCCTGTC 61.365 66.667 0.00 0.00 44.04 3.51
16 17 4.974721 CCAGCAAACCGCCCCTGT 62.975 66.667 0.00 0.00 44.04 4.00
23 24 3.814268 CATCCGCCCAGCAAACCG 61.814 66.667 0.00 0.00 0.00 4.44
24 25 2.676471 ACATCCGCCCAGCAAACC 60.676 61.111 0.00 0.00 0.00 3.27
25 26 1.523154 TTCACATCCGCCCAGCAAAC 61.523 55.000 0.00 0.00 0.00 2.93
26 27 1.228398 TTCACATCCGCCCAGCAAA 60.228 52.632 0.00 0.00 0.00 3.68
27 28 1.675310 CTTCACATCCGCCCAGCAA 60.675 57.895 0.00 0.00 0.00 3.91
28 29 2.046023 CTTCACATCCGCCCAGCA 60.046 61.111 0.00 0.00 0.00 4.41
29 30 2.825836 CCTTCACATCCGCCCAGC 60.826 66.667 0.00 0.00 0.00 4.85
30 31 2.825836 GCCTTCACATCCGCCCAG 60.826 66.667 0.00 0.00 0.00 4.45
31 32 4.776322 CGCCTTCACATCCGCCCA 62.776 66.667 0.00 0.00 0.00 5.36
36 37 3.379865 TACCGCCGCCTTCACATCC 62.380 63.158 0.00 0.00 0.00 3.51
37 38 1.883084 CTACCGCCGCCTTCACATC 60.883 63.158 0.00 0.00 0.00 3.06
38 39 2.186903 CTACCGCCGCCTTCACAT 59.813 61.111 0.00 0.00 0.00 3.21
39 40 4.752879 GCTACCGCCGCCTTCACA 62.753 66.667 0.00 0.00 0.00 3.58
40 41 4.452733 AGCTACCGCCGCCTTCAC 62.453 66.667 0.00 0.00 36.60 3.18
41 42 4.451150 CAGCTACCGCCGCCTTCA 62.451 66.667 0.00 0.00 36.60 3.02
46 47 4.143333 TCTTCCAGCTACCGCCGC 62.143 66.667 0.00 0.00 36.60 6.53
47 48 2.105128 CTCTTCCAGCTACCGCCG 59.895 66.667 0.00 0.00 36.60 6.46
48 49 1.142097 GACTCTTCCAGCTACCGCC 59.858 63.158 0.00 0.00 36.60 6.13
49 50 1.226717 CGACTCTTCCAGCTACCGC 60.227 63.158 0.00 0.00 0.00 5.68
50 51 1.226717 GCGACTCTTCCAGCTACCG 60.227 63.158 0.00 0.00 0.00 4.02
51 52 1.142097 GGCGACTCTTCCAGCTACC 59.858 63.158 0.00 0.00 0.00 3.18
52 53 1.226717 CGGCGACTCTTCCAGCTAC 60.227 63.158 0.00 0.00 0.00 3.58
53 54 3.064987 GCGGCGACTCTTCCAGCTA 62.065 63.158 12.98 0.00 0.00 3.32
54 55 4.443266 GCGGCGACTCTTCCAGCT 62.443 66.667 12.98 0.00 0.00 4.24
55 56 4.742201 TGCGGCGACTCTTCCAGC 62.742 66.667 12.98 0.00 0.00 4.85
56 57 1.227999 TTTTGCGGCGACTCTTCCAG 61.228 55.000 12.98 0.00 0.00 3.86
57 58 0.816018 TTTTTGCGGCGACTCTTCCA 60.816 50.000 12.98 0.00 0.00 3.53
58 59 0.521735 ATTTTTGCGGCGACTCTTCC 59.478 50.000 12.98 0.00 0.00 3.46
59 60 1.606606 CATTTTTGCGGCGACTCTTC 58.393 50.000 12.98 0.00 0.00 2.87
60 61 0.240945 CCATTTTTGCGGCGACTCTT 59.759 50.000 12.98 0.00 0.00 2.85
61 62 0.605319 TCCATTTTTGCGGCGACTCT 60.605 50.000 12.98 0.00 0.00 3.24
62 63 0.454452 GTCCATTTTTGCGGCGACTC 60.454 55.000 12.98 0.00 0.00 3.36
63 64 1.579429 GTCCATTTTTGCGGCGACT 59.421 52.632 12.98 0.00 0.00 4.18
64 65 1.795962 CGTCCATTTTTGCGGCGAC 60.796 57.895 12.98 2.02 0.00 5.19
65 66 2.558821 CGTCCATTTTTGCGGCGA 59.441 55.556 12.98 0.00 0.00 5.54
66 67 2.503809 CCGTCCATTTTTGCGGCG 60.504 61.111 0.51 0.51 37.69 6.46
68 69 2.503809 CGCCGTCCATTTTTGCGG 60.504 61.111 0.00 0.00 46.17 5.69
69 70 2.503809 CCGCCGTCCATTTTTGCG 60.504 61.111 0.00 0.00 44.47 4.85
70 71 2.809174 GCCGCCGTCCATTTTTGC 60.809 61.111 0.00 0.00 0.00 3.68
71 72 2.503809 CGCCGCCGTCCATTTTTG 60.504 61.111 0.00 0.00 0.00 2.44
72 73 2.981350 ACGCCGCCGTCCATTTTT 60.981 55.556 0.00 0.00 46.39 1.94
88 89 2.126031 GCCTTCTCCGTCACCGAC 60.126 66.667 0.00 0.00 35.63 4.79
89 90 3.744719 CGCCTTCTCCGTCACCGA 61.745 66.667 0.00 0.00 35.63 4.69
90 91 4.796231 CCGCCTTCTCCGTCACCG 62.796 72.222 0.00 0.00 0.00 4.94
91 92 4.452733 CCCGCCTTCTCCGTCACC 62.453 72.222 0.00 0.00 0.00 4.02
92 93 4.452733 CCCCGCCTTCTCCGTCAC 62.453 72.222 0.00 0.00 0.00 3.67
108 109 4.660938 ACAAGCAACCCTCGCCCC 62.661 66.667 0.00 0.00 0.00 5.80
109 110 2.597510 AACAAGCAACCCTCGCCC 60.598 61.111 0.00 0.00 0.00 6.13
110 111 2.644992 CAACAAGCAACCCTCGCC 59.355 61.111 0.00 0.00 0.00 5.54
111 112 2.644992 CCAACAAGCAACCCTCGC 59.355 61.111 0.00 0.00 0.00 5.03
112 113 2.644992 GCCAACAAGCAACCCTCG 59.355 61.111 0.00 0.00 0.00 4.63
113 114 2.919494 CGGCCAACAAGCAACCCTC 61.919 63.158 2.24 0.00 0.00 4.30
114 115 2.912025 CGGCCAACAAGCAACCCT 60.912 61.111 2.24 0.00 0.00 4.34
115 116 3.989787 CCGGCCAACAAGCAACCC 61.990 66.667 2.24 0.00 0.00 4.11
116 117 3.989787 CCCGGCCAACAAGCAACC 61.990 66.667 2.24 0.00 0.00 3.77
117 118 3.989787 CCCCGGCCAACAAGCAAC 61.990 66.667 2.24 0.00 0.00 4.17
132 133 3.825623 CATTGGCCTCCCTCCCCC 61.826 72.222 3.32 0.00 0.00 5.40
133 134 3.023735 ACATTGGCCTCCCTCCCC 61.024 66.667 3.32 0.00 0.00 4.81
134 135 2.276740 CACATTGGCCTCCCTCCC 59.723 66.667 3.32 0.00 0.00 4.30
135 136 2.440980 GCACATTGGCCTCCCTCC 60.441 66.667 3.32 0.00 0.00 4.30
143 144 1.870055 CTGGTCTGTGGCACATTGGC 61.870 60.000 22.35 12.00 44.52 4.52
144 145 1.870055 GCTGGTCTGTGGCACATTGG 61.870 60.000 22.35 10.02 44.52 3.16
145 146 1.582968 GCTGGTCTGTGGCACATTG 59.417 57.895 22.35 10.82 44.52 2.82
146 147 1.968017 CGCTGGTCTGTGGCACATT 60.968 57.895 22.35 0.00 44.52 2.71
147 148 2.359107 CGCTGGTCTGTGGCACAT 60.359 61.111 22.35 0.00 44.52 3.21
148 149 4.624364 CCGCTGGTCTGTGGCACA 62.624 66.667 20.76 20.76 0.00 4.57
165 166 4.791069 TACTCCTGTCCCCGGGCC 62.791 72.222 17.73 8.41 37.01 5.80
166 167 3.155167 CTACTCCTGTCCCCGGGC 61.155 72.222 17.73 2.17 37.01 6.13
167 168 2.444140 CCTACTCCTGTCCCCGGG 60.444 72.222 15.80 15.80 38.61 5.73
168 169 3.155167 GCCTACTCCTGTCCCCGG 61.155 72.222 0.00 0.00 0.00 5.73
169 170 3.528370 CGCCTACTCCTGTCCCCG 61.528 72.222 0.00 0.00 0.00 5.73
170 171 2.043248 TCGCCTACTCCTGTCCCC 60.043 66.667 0.00 0.00 0.00 4.81
171 172 2.424733 GGTCGCCTACTCCTGTCCC 61.425 68.421 0.00 0.00 0.00 4.46
172 173 2.772691 CGGTCGCCTACTCCTGTCC 61.773 68.421 0.00 0.00 0.00 4.02
173 174 2.799371 CGGTCGCCTACTCCTGTC 59.201 66.667 0.00 0.00 0.00 3.51
174 175 3.450115 GCGGTCGCCTACTCCTGT 61.450 66.667 3.73 0.00 34.56 4.00
175 176 4.554363 CGCGGTCGCCTACTCCTG 62.554 72.222 9.85 0.00 37.98 3.86
212 213 2.014093 GAGCCTGATTTGCGTCGACG 62.014 60.000 32.57 32.57 43.27 5.12
213 214 1.014044 TGAGCCTGATTTGCGTCGAC 61.014 55.000 5.18 5.18 0.00 4.20
214 215 0.320334 TTGAGCCTGATTTGCGTCGA 60.320 50.000 0.00 0.00 0.00 4.20
215 216 0.516877 TTTGAGCCTGATTTGCGTCG 59.483 50.000 0.00 0.00 0.00 5.12
216 217 2.704725 TTTTGAGCCTGATTTGCGTC 57.295 45.000 0.00 0.00 0.00 5.19
217 218 3.319755 CATTTTTGAGCCTGATTTGCGT 58.680 40.909 0.00 0.00 0.00 5.24
218 219 2.669434 CCATTTTTGAGCCTGATTTGCG 59.331 45.455 0.00 0.00 0.00 4.85
219 220 3.004862 CCCATTTTTGAGCCTGATTTGC 58.995 45.455 0.00 0.00 0.00 3.68
220 221 4.248058 GACCCATTTTTGAGCCTGATTTG 58.752 43.478 0.00 0.00 0.00 2.32
221 222 3.056607 CGACCCATTTTTGAGCCTGATTT 60.057 43.478 0.00 0.00 0.00 2.17
222 223 2.493278 CGACCCATTTTTGAGCCTGATT 59.507 45.455 0.00 0.00 0.00 2.57
223 224 2.094675 CGACCCATTTTTGAGCCTGAT 58.905 47.619 0.00 0.00 0.00 2.90
224 225 1.533625 CGACCCATTTTTGAGCCTGA 58.466 50.000 0.00 0.00 0.00 3.86
225 226 0.109132 GCGACCCATTTTTGAGCCTG 60.109 55.000 0.00 0.00 0.00 4.85
226 227 1.250840 GGCGACCCATTTTTGAGCCT 61.251 55.000 0.00 0.00 39.92 4.58
227 228 1.215382 GGCGACCCATTTTTGAGCC 59.785 57.895 0.00 0.00 36.08 4.70
228 229 4.889427 GGCGACCCATTTTTGAGC 57.111 55.556 0.00 0.00 0.00 4.26
240 241 2.600475 TTTTTCGTCTGCGGGCGAC 61.600 57.895 24.12 3.37 36.82 5.19
241 242 2.280254 TTTTTCGTCTGCGGGCGA 60.280 55.556 20.19 20.19 38.89 5.54
242 243 2.127383 GTTTTTCGTCTGCGGGCG 60.127 61.111 14.78 14.78 38.89 6.13
243 244 2.108344 TTCGTTTTTCGTCTGCGGGC 62.108 55.000 0.00 0.00 40.80 6.13
244 245 0.383860 GTTCGTTTTTCGTCTGCGGG 60.384 55.000 0.00 0.00 40.80 6.13
245 246 0.302288 TGTTCGTTTTTCGTCTGCGG 59.698 50.000 0.00 0.00 40.80 5.69
246 247 1.372656 GTGTTCGTTTTTCGTCTGCG 58.627 50.000 0.00 0.00 40.80 5.18
247 248 1.596220 GGGTGTTCGTTTTTCGTCTGC 60.596 52.381 0.00 0.00 40.80 4.26
248 249 1.332552 CGGGTGTTCGTTTTTCGTCTG 60.333 52.381 0.00 0.00 40.80 3.51
249 250 0.932399 CGGGTGTTCGTTTTTCGTCT 59.068 50.000 0.00 0.00 40.80 4.18
250 251 0.652071 ACGGGTGTTCGTTTTTCGTC 59.348 50.000 0.00 0.00 40.85 4.20
251 252 0.652071 GACGGGTGTTCGTTTTTCGT 59.348 50.000 0.00 0.00 43.96 3.85
252 253 0.041926 GGACGGGTGTTCGTTTTTCG 60.042 55.000 0.00 0.00 43.96 3.46
253 254 1.015868 TGGACGGGTGTTCGTTTTTC 58.984 50.000 0.00 0.00 43.96 2.29
254 255 1.682740 ATGGACGGGTGTTCGTTTTT 58.317 45.000 0.00 0.00 43.96 1.94
255 256 1.682740 AATGGACGGGTGTTCGTTTT 58.317 45.000 0.00 0.00 43.96 2.43
256 257 1.335496 CAAATGGACGGGTGTTCGTTT 59.665 47.619 0.00 0.00 42.39 3.60
257 258 0.948678 CAAATGGACGGGTGTTCGTT 59.051 50.000 0.00 0.00 43.96 3.85
258 259 0.887387 CCAAATGGACGGGTGTTCGT 60.887 55.000 0.00 0.00 46.83 3.85
259 260 1.582610 CCCAAATGGACGGGTGTTCG 61.583 60.000 0.00 0.00 37.70 3.95
260 261 2.263153 CCCAAATGGACGGGTGTTC 58.737 57.895 0.00 0.00 37.70 3.18
261 262 4.511838 CCCAAATGGACGGGTGTT 57.488 55.556 0.00 0.00 37.70 3.32
268 269 3.810896 GCGCCGACCCAAATGGAC 61.811 66.667 0.00 0.00 37.39 4.02
271 272 3.732892 AACGCGCCGACCCAAATG 61.733 61.111 5.73 0.00 0.00 2.32
272 273 3.732892 CAACGCGCCGACCCAAAT 61.733 61.111 5.73 0.00 0.00 2.32
285 286 4.398598 CGAAAAGGCGGCCCAACG 62.399 66.667 17.02 12.77 0.00 4.10
286 287 4.050934 CCGAAAAGGCGGCCCAAC 62.051 66.667 17.02 4.24 45.38 3.77
307 308 4.379143 GTTCGTTTGGGTCGGCGC 62.379 66.667 0.00 0.00 0.00 6.53
308 309 4.067016 CGTTCGTTTGGGTCGGCG 62.067 66.667 0.00 0.00 0.00 6.46
309 310 3.719144 CCGTTCGTTTGGGTCGGC 61.719 66.667 0.00 0.00 35.01 5.54
310 311 3.719144 GCCGTTCGTTTGGGTCGG 61.719 66.667 0.00 0.00 43.37 4.79
311 312 3.719144 GGCCGTTCGTTTGGGTCG 61.719 66.667 0.00 0.00 0.00 4.79
312 313 3.719144 CGGCCGTTCGTTTGGGTC 61.719 66.667 19.50 0.00 0.00 4.46
327 328 3.192922 GACCCATTTCGTCCGCGG 61.193 66.667 22.12 22.12 38.89 6.46
328 329 3.550992 CGACCCATTTCGTCCGCG 61.551 66.667 0.00 0.00 39.92 6.46
341 342 1.305930 GCAACTCCAATGGGACGACC 61.306 60.000 0.00 0.00 38.64 4.79
342 343 0.321653 AGCAACTCCAATGGGACGAC 60.322 55.000 0.00 0.00 38.64 4.34
343 344 0.036388 GAGCAACTCCAATGGGACGA 60.036 55.000 0.00 0.00 38.64 4.20
344 345 0.036010 AGAGCAACTCCAATGGGACG 60.036 55.000 0.00 0.00 38.64 4.79
345 346 2.206576 AAGAGCAACTCCAATGGGAC 57.793 50.000 0.00 0.00 38.64 4.46
346 347 2.239654 CCTAAGAGCAACTCCAATGGGA 59.760 50.000 0.00 0.00 42.29 4.37
347 348 2.239654 TCCTAAGAGCAACTCCAATGGG 59.760 50.000 0.00 0.00 0.00 4.00
348 349 3.634397 TCCTAAGAGCAACTCCAATGG 57.366 47.619 0.00 0.00 0.00 3.16
349 350 7.630242 TTATTTCCTAAGAGCAACTCCAATG 57.370 36.000 0.00 0.00 0.00 2.82
350 351 8.829373 ATTTATTTCCTAAGAGCAACTCCAAT 57.171 30.769 0.00 0.00 0.00 3.16
351 352 9.747898 TTATTTATTTCCTAAGAGCAACTCCAA 57.252 29.630 0.00 0.00 0.00 3.53
352 353 9.747898 TTTATTTATTTCCTAAGAGCAACTCCA 57.252 29.630 0.00 0.00 0.00 3.86
371 372 9.847224 GGTCATTGGTTCTAGGAGATTTATTTA 57.153 33.333 0.00 0.00 0.00 1.40
372 373 8.560903 AGGTCATTGGTTCTAGGAGATTTATTT 58.439 33.333 0.00 0.00 0.00 1.40
373 374 7.995488 CAGGTCATTGGTTCTAGGAGATTTATT 59.005 37.037 0.00 0.00 0.00 1.40
374 375 7.127955 ACAGGTCATTGGTTCTAGGAGATTTAT 59.872 37.037 0.00 0.00 0.00 1.40
375 376 6.443849 ACAGGTCATTGGTTCTAGGAGATTTA 59.556 38.462 0.00 0.00 0.00 1.40
376 377 5.251700 ACAGGTCATTGGTTCTAGGAGATTT 59.748 40.000 0.00 0.00 0.00 2.17
377 378 4.785376 ACAGGTCATTGGTTCTAGGAGATT 59.215 41.667 0.00 0.00 0.00 2.40
378 379 4.366267 ACAGGTCATTGGTTCTAGGAGAT 58.634 43.478 0.00 0.00 0.00 2.75
379 380 3.791320 ACAGGTCATTGGTTCTAGGAGA 58.209 45.455 0.00 0.00 0.00 3.71
380 381 4.559862 AACAGGTCATTGGTTCTAGGAG 57.440 45.455 0.00 0.00 0.00 3.69
381 382 4.506625 CCAAACAGGTCATTGGTTCTAGGA 60.507 45.833 0.00 0.00 40.96 2.94
382 383 3.758554 CCAAACAGGTCATTGGTTCTAGG 59.241 47.826 0.00 0.00 40.96 3.02
383 384 4.455877 GTCCAAACAGGTCATTGGTTCTAG 59.544 45.833 4.62 0.00 45.12 2.43
429 433 3.149196 TCGTTCTACAAGTACCGGAAGT 58.851 45.455 9.46 0.96 0.00 3.01
430 434 3.837213 TCGTTCTACAAGTACCGGAAG 57.163 47.619 9.46 0.00 0.00 3.46
431 435 3.119388 CCATCGTTCTACAAGTACCGGAA 60.119 47.826 9.46 0.00 0.00 4.30
432 436 2.424601 CCATCGTTCTACAAGTACCGGA 59.575 50.000 9.46 0.00 0.00 5.14
433 437 2.805845 CCATCGTTCTACAAGTACCGG 58.194 52.381 0.00 0.00 0.00 5.28
434 438 2.159282 AGCCATCGTTCTACAAGTACCG 60.159 50.000 0.00 0.00 0.00 4.02
435 439 3.130693 AGAGCCATCGTTCTACAAGTACC 59.869 47.826 0.00 0.00 0.00 3.34
436 440 4.142447 TGAGAGCCATCGTTCTACAAGTAC 60.142 45.833 0.00 0.00 28.28 2.73
456 460 6.857777 AGAGAAACTGTTGAAATGTCTGAG 57.142 37.500 0.00 0.00 0.00 3.35
482 486 2.025155 CCGGCTGCTTCTAGTCTAGAA 58.975 52.381 19.10 19.10 42.19 2.10
483 487 1.064611 ACCGGCTGCTTCTAGTCTAGA 60.065 52.381 0.00 5.41 0.00 2.43
484 488 1.335496 GACCGGCTGCTTCTAGTCTAG 59.665 57.143 0.00 0.00 0.00 2.43
485 489 1.340697 TGACCGGCTGCTTCTAGTCTA 60.341 52.381 0.00 0.00 0.00 2.59
486 490 0.612174 TGACCGGCTGCTTCTAGTCT 60.612 55.000 0.00 0.00 0.00 3.24
487 491 0.179124 CTGACCGGCTGCTTCTAGTC 60.179 60.000 0.00 0.78 0.00 2.59
488 492 0.900647 ACTGACCGGCTGCTTCTAGT 60.901 55.000 0.00 0.00 0.00 2.57
555 561 3.672503 GGGTCCAATGTGGGGGCT 61.673 66.667 0.00 0.00 38.32 5.19
597 603 0.036164 TGGACACCATGGACTTTCCG 59.964 55.000 21.47 0.00 40.17 4.30
602 608 1.210204 ATGCCTGGACACCATGGACT 61.210 55.000 21.47 1.44 30.82 3.85
644 661 4.264083 TGGCAGGTAGTAGTAGGTAGTTGT 60.264 45.833 0.00 0.00 0.00 3.32
646 663 4.598036 TGGCAGGTAGTAGTAGGTAGTT 57.402 45.455 0.00 0.00 0.00 2.24
702 731 0.393808 AAACCGTGAACACCAGCACT 60.394 50.000 0.00 0.00 32.98 4.40
703 732 0.248458 CAAACCGTGAACACCAGCAC 60.248 55.000 0.00 0.00 0.00 4.40
704 733 0.393132 TCAAACCGTGAACACCAGCA 60.393 50.000 0.00 0.00 31.51 4.41
705 734 0.307760 CTCAAACCGTGAACACCAGC 59.692 55.000 0.00 0.00 35.22 4.85
706 735 0.307760 GCTCAAACCGTGAACACCAG 59.692 55.000 0.00 0.00 35.22 4.00
722 751 3.869272 CATGTTGGCTCGCGGCTC 61.869 66.667 17.07 9.41 41.46 4.70
883 948 4.020378 CGGTTGCCGGTTTGGACG 62.020 66.667 1.90 0.00 44.15 4.79
921 991 2.370849 GGGAGTTTTGTCAGGTCAGGTA 59.629 50.000 0.00 0.00 0.00 3.08
1408 1526 2.300152 TCTCGCCCATGACATAGATTCC 59.700 50.000 0.00 0.00 0.00 3.01
1484 1682 2.643232 GGACGGGTAACAGACGCCT 61.643 63.158 0.00 0.00 37.73 5.52
1502 1700 0.533951 GTGTGGAGTACTAACGGGGG 59.466 60.000 0.00 0.00 0.00 5.40
1540 1738 5.939883 TCAGAGGAAGACAACAAATGGTATG 59.060 40.000 0.00 0.00 0.00 2.39
1544 1742 5.972107 AATCAGAGGAAGACAACAAATGG 57.028 39.130 0.00 0.00 0.00 3.16
1898 2098 5.050644 TGAATAAGCATGCAACACTTGAG 57.949 39.130 21.98 0.00 0.00 3.02
2033 2233 1.134175 AGAAGGCCAACAACAAACACG 59.866 47.619 5.01 0.00 0.00 4.49
2057 2257 1.570857 ATCCCCCGATGAGGCAAACA 61.571 55.000 0.00 0.00 39.21 2.83
2069 2269 3.011818 GTTAAGGTACACAAATCCCCCG 58.988 50.000 0.00 0.00 0.00 5.73
2085 2285 9.888878 CATAATGCTGAATTATCACCTGTTAAG 57.111 33.333 0.00 0.00 39.07 1.85
2135 2335 7.596995 CGCTCTTATATTTCTTTACAGAGGGAG 59.403 40.741 4.76 0.00 40.49 4.30
2136 2336 7.069578 ACGCTCTTATATTTCTTTACAGAGGGA 59.930 37.037 14.96 0.00 40.49 4.20
2137 2337 7.210873 ACGCTCTTATATTTCTTTACAGAGGG 58.789 38.462 8.36 8.36 42.53 4.30
2138 2338 8.649973 AACGCTCTTATATTTCTTTACAGAGG 57.350 34.615 0.00 0.00 0.00 3.69
2170 2370 7.393841 AGAGCGTTTAGATCACTACTTTAGT 57.606 36.000 0.00 0.00 37.82 2.24
2171 2371 9.953697 ATAAGAGCGTTTAGATCACTACTTTAG 57.046 33.333 0.00 0.00 37.82 1.85
2183 2383 9.241317 CCGTAAAGAAATATAAGAGCGTTTAGA 57.759 33.333 0.00 0.00 0.00 2.10
2184 2384 9.241317 TCCGTAAAGAAATATAAGAGCGTTTAG 57.759 33.333 0.00 0.00 0.00 1.85
2185 2385 9.241317 CTCCGTAAAGAAATATAAGAGCGTTTA 57.759 33.333 0.00 0.00 0.00 2.01
2186 2386 7.224167 CCTCCGTAAAGAAATATAAGAGCGTTT 59.776 37.037 0.00 0.00 0.00 3.60
2187 2387 6.700520 CCTCCGTAAAGAAATATAAGAGCGTT 59.299 38.462 0.00 0.00 0.00 4.84
2188 2388 6.214399 CCTCCGTAAAGAAATATAAGAGCGT 58.786 40.000 0.00 0.00 0.00 5.07
2189 2389 5.634020 CCCTCCGTAAAGAAATATAAGAGCG 59.366 44.000 0.00 0.00 0.00 5.03
2190 2390 6.756221 TCCCTCCGTAAAGAAATATAAGAGC 58.244 40.000 0.00 0.00 0.00 4.09
2191 2391 7.953752 ACTCCCTCCGTAAAGAAATATAAGAG 58.046 38.462 0.00 0.00 0.00 2.85
2192 2392 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
2465 2668 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
2466 2669 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
2467 2670 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
2468 2671 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
2469 2672 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
2470 2673 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
2471 2674 2.597305 CGACAAGTAATTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
2472 2675 2.598589 CGACAAGTAATTCCGAACGGA 58.401 47.619 12.04 12.04 43.52 4.69
2473 2676 1.060122 GCGACAAGTAATTCCGAACGG 59.940 52.381 6.94 6.94 0.00 4.44
2474 2677 1.722464 TGCGACAAGTAATTCCGAACG 59.278 47.619 0.00 0.00 0.00 3.95
2475 2678 2.991190 TCTGCGACAAGTAATTCCGAAC 59.009 45.455 0.00 0.00 0.00 3.95
2476 2679 3.306917 TCTGCGACAAGTAATTCCGAA 57.693 42.857 0.00 0.00 0.00 4.30
2477 2680 3.306917 TTCTGCGACAAGTAATTCCGA 57.693 42.857 0.00 0.00 0.00 4.55
2478 2681 4.600012 ATTTCTGCGACAAGTAATTCCG 57.400 40.909 0.00 0.00 0.00 4.30
2479 2682 6.903883 TCTATTTCTGCGACAAGTAATTCC 57.096 37.500 0.00 0.00 0.00 3.01
2480 2683 7.910304 ACATCTATTTCTGCGACAAGTAATTC 58.090 34.615 0.00 0.00 0.00 2.17
2481 2684 7.849804 ACATCTATTTCTGCGACAAGTAATT 57.150 32.000 0.00 0.00 0.00 1.40
2482 2685 9.197694 GATACATCTATTTCTGCGACAAGTAAT 57.802 33.333 0.00 0.00 0.00 1.89
2483 2686 8.414003 AGATACATCTATTTCTGCGACAAGTAA 58.586 33.333 0.00 0.00 34.85 2.24
2484 2687 7.941919 AGATACATCTATTTCTGCGACAAGTA 58.058 34.615 0.00 0.00 34.85 2.24
2485 2688 6.810911 AGATACATCTATTTCTGCGACAAGT 58.189 36.000 0.00 0.00 34.85 3.16
2486 2689 8.293157 TCTAGATACATCTATTTCTGCGACAAG 58.707 37.037 0.00 0.00 38.60 3.16
2487 2690 8.076781 GTCTAGATACATCTATTTCTGCGACAA 58.923 37.037 0.00 0.00 38.60 3.18
2488 2691 7.571428 CGTCTAGATACATCTATTTCTGCGACA 60.571 40.741 0.00 0.00 38.60 4.35
2489 2692 6.739100 CGTCTAGATACATCTATTTCTGCGAC 59.261 42.308 0.00 2.21 38.60 5.19
2490 2693 6.427242 ACGTCTAGATACATCTATTTCTGCGA 59.573 38.462 0.00 0.00 38.60 5.10
2491 2694 6.604012 ACGTCTAGATACATCTATTTCTGCG 58.396 40.000 0.00 0.00 38.60 5.18
2517 2720 9.542462 CGGAAATGGATGTATCTAGAACTAAAA 57.458 33.333 0.00 0.00 0.00 1.52
2518 2721 8.920174 TCGGAAATGGATGTATCTAGAACTAAA 58.080 33.333 0.00 0.00 0.00 1.85
2519 2722 8.473358 TCGGAAATGGATGTATCTAGAACTAA 57.527 34.615 0.00 0.00 0.00 2.24
2520 2723 7.942894 TCTCGGAAATGGATGTATCTAGAACTA 59.057 37.037 0.00 0.00 0.00 2.24
2521 2724 6.778069 TCTCGGAAATGGATGTATCTAGAACT 59.222 38.462 0.00 0.00 0.00 3.01
2522 2725 6.864165 GTCTCGGAAATGGATGTATCTAGAAC 59.136 42.308 0.00 0.00 0.00 3.01
2523 2726 6.549736 TGTCTCGGAAATGGATGTATCTAGAA 59.450 38.462 0.00 0.00 0.00 2.10
2524 2727 6.068670 TGTCTCGGAAATGGATGTATCTAGA 58.931 40.000 0.00 0.00 0.00 2.43
2525 2728 6.332735 TGTCTCGGAAATGGATGTATCTAG 57.667 41.667 0.00 0.00 0.00 2.43
2526 2729 6.323996 ACTTGTCTCGGAAATGGATGTATCTA 59.676 38.462 0.00 0.00 0.00 1.98
2527 2730 5.129485 ACTTGTCTCGGAAATGGATGTATCT 59.871 40.000 0.00 0.00 0.00 1.98
2528 2731 5.360591 ACTTGTCTCGGAAATGGATGTATC 58.639 41.667 0.00 0.00 0.00 2.24
2529 2732 5.359194 ACTTGTCTCGGAAATGGATGTAT 57.641 39.130 0.00 0.00 0.00 2.29
2530 2733 4.819105 ACTTGTCTCGGAAATGGATGTA 57.181 40.909 0.00 0.00 0.00 2.29
2531 2734 3.703001 ACTTGTCTCGGAAATGGATGT 57.297 42.857 0.00 0.00 0.00 3.06
2532 2735 6.238484 GGAATTACTTGTCTCGGAAATGGATG 60.238 42.308 0.00 0.00 0.00 3.51
2533 2736 5.823045 GGAATTACTTGTCTCGGAAATGGAT 59.177 40.000 0.00 0.00 0.00 3.41
2534 2737 5.183228 GGAATTACTTGTCTCGGAAATGGA 58.817 41.667 0.00 0.00 0.00 3.41
2535 2738 4.034048 CGGAATTACTTGTCTCGGAAATGG 59.966 45.833 0.00 0.00 0.00 3.16
2536 2739 4.868171 TCGGAATTACTTGTCTCGGAAATG 59.132 41.667 0.00 0.00 0.00 2.32
2537 2740 5.080969 TCGGAATTACTTGTCTCGGAAAT 57.919 39.130 0.00 0.00 0.00 2.17
2538 2741 4.524316 TCGGAATTACTTGTCTCGGAAA 57.476 40.909 0.00 0.00 0.00 3.13
2539 2742 4.240096 GTTCGGAATTACTTGTCTCGGAA 58.760 43.478 0.00 0.00 0.00 4.30
2540 2743 3.671433 CGTTCGGAATTACTTGTCTCGGA 60.671 47.826 0.00 0.00 0.00 4.55
2541 2744 2.597305 CGTTCGGAATTACTTGTCTCGG 59.403 50.000 0.00 0.00 0.00 4.63
2542 2745 2.597305 CCGTTCGGAATTACTTGTCTCG 59.403 50.000 5.19 0.00 0.00 4.04
2543 2746 3.841643 TCCGTTCGGAATTACTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
2544 2747 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
2545 2748 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
2546 2749 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
2547 2750 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
2548 2751 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
2549 2752 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
2550 2753 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
2551 2754 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
2552 2755 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
2553 2756 2.083628 ATACTCCCTCCGTTCGGAAT 57.916 50.000 14.79 2.14 33.41 3.01
2554 2757 1.856629 AATACTCCCTCCGTTCGGAA 58.143 50.000 14.79 0.00 33.41 4.30
2555 2758 1.479323 CAAATACTCCCTCCGTTCGGA 59.521 52.381 13.34 13.34 0.00 4.55
2556 2759 1.206371 ACAAATACTCCCTCCGTTCGG 59.794 52.381 4.74 4.74 0.00 4.30
2557 2760 2.094390 TCACAAATACTCCCTCCGTTCG 60.094 50.000 0.00 0.00 0.00 3.95
2558 2761 3.604875 TCACAAATACTCCCTCCGTTC 57.395 47.619 0.00 0.00 0.00 3.95
2559 2762 4.261801 CATTCACAAATACTCCCTCCGTT 58.738 43.478 0.00 0.00 0.00 4.44
2560 2763 3.370527 CCATTCACAAATACTCCCTCCGT 60.371 47.826 0.00 0.00 0.00 4.69
2561 2764 3.118408 TCCATTCACAAATACTCCCTCCG 60.118 47.826 0.00 0.00 0.00 4.63
2562 2765 4.455606 CTCCATTCACAAATACTCCCTCC 58.544 47.826 0.00 0.00 0.00 4.30
2563 2766 4.455606 CCTCCATTCACAAATACTCCCTC 58.544 47.826 0.00 0.00 0.00 4.30
2564 2767 3.203040 CCCTCCATTCACAAATACTCCCT 59.797 47.826 0.00 0.00 0.00 4.20
2565 2768 3.202151 TCCCTCCATTCACAAATACTCCC 59.798 47.826 0.00 0.00 0.00 4.30
2566 2769 4.080299 ACTCCCTCCATTCACAAATACTCC 60.080 45.833 0.00 0.00 0.00 3.85
2567 2770 5.104259 ACTCCCTCCATTCACAAATACTC 57.896 43.478 0.00 0.00 0.00 2.59
2568 2771 5.487488 TGTACTCCCTCCATTCACAAATACT 59.513 40.000 0.00 0.00 0.00 2.12
2569 2772 5.741011 TGTACTCCCTCCATTCACAAATAC 58.259 41.667 0.00 0.00 0.00 1.89
2624 2827 6.204882 AGTCAACAAGTATAGACCAACAAAGC 59.795 38.462 0.00 0.00 0.00 3.51
3033 3236 5.474532 TCTGCAGAAATGAGTAGCAAAACAT 59.525 36.000 15.67 0.00 34.45 2.71
3330 3550 9.174166 AGTAATTAATGGAGGTAATGTCAACAC 57.826 33.333 0.00 0.00 0.00 3.32
3521 3744 2.301870 TGGTCGAGTCCTTTGCATAGTT 59.698 45.455 3.39 0.00 0.00 2.24
3598 3821 2.072298 GAGCAAGTAGTGTCAAGGCTG 58.928 52.381 0.00 0.00 0.00 4.85
3678 3901 3.547413 CGAATACTCGGTAGACGCATTCA 60.547 47.826 0.00 0.00 43.86 2.57
3679 3902 2.971915 CGAATACTCGGTAGACGCATTC 59.028 50.000 0.00 0.00 43.86 2.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.