Multiple sequence alignment - TraesCS2B01G346800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G346800 chr2B 100.000 3008 0 0 1 3008 493568289 493565282 0.000000e+00 5555.0
1 TraesCS2B01G346800 chr2B 95.833 48 2 0 660 707 67921822 67921775 8.940000e-11 78.7
2 TraesCS2B01G346800 chr2D 92.299 1714 54 36 709 2399 420901450 420899792 0.000000e+00 2362.0
3 TraesCS2B01G346800 chr2D 93.663 505 27 5 2487 2989 420899804 420899303 0.000000e+00 750.0
4 TraesCS2B01G346800 chr2D 92.905 296 19 2 315 609 176599241 176599535 2.140000e-116 429.0
5 TraesCS2B01G346800 chr2D 90.373 322 19 7 1 317 420901839 420901525 2.160000e-111 412.0
6 TraesCS2B01G346800 chr2D 95.833 48 2 0 660 707 42691347 42691394 8.940000e-11 78.7
7 TraesCS2B01G346800 chr2A 90.748 1697 66 37 709 2380 566860154 566858524 0.000000e+00 2180.0
8 TraesCS2B01G346800 chr2A 91.761 352 19 2 2647 2989 566856791 566856441 5.830000e-132 481.0
9 TraesCS2B01G346800 chr2A 84.337 166 12 1 2487 2652 566858512 566858361 1.870000e-32 150.0
10 TraesCS2B01G346800 chr7D 93.581 296 17 2 315 609 151003164 151002870 9.900000e-120 440.0
11 TraesCS2B01G346800 chr6B 93.581 296 18 1 315 609 607985943 607986238 9.900000e-120 440.0
12 TraesCS2B01G346800 chr6B 95.000 60 3 0 1352 1411 147056516 147056575 8.880000e-16 95.3
13 TraesCS2B01G346800 chr6B 90.909 44 3 1 1179 1222 89513877 89513919 1.160000e-04 58.4
14 TraesCS2B01G346800 chr6D 93.243 296 18 2 315 609 291036375 291036669 4.610000e-118 435.0
15 TraesCS2B01G346800 chr6D 95.000 60 3 0 1352 1411 72405979 72406038 8.880000e-16 95.3
16 TraesCS2B01G346800 chr6D 100.000 46 0 0 2399 2444 467147164 467147209 5.340000e-13 86.1
17 TraesCS2B01G346800 chr4B 93.515 293 17 2 318 609 297866159 297865868 4.610000e-118 435.0
18 TraesCS2B01G346800 chr4B 96.000 50 2 0 2395 2444 568662142 568662191 6.910000e-12 82.4
19 TraesCS2B01G346800 chr3A 92.929 297 20 1 314 609 195595143 195594847 5.960000e-117 431.0
20 TraesCS2B01G346800 chr3A 91.781 73 6 0 1339 1411 208222074 208222146 5.310000e-18 102.0
21 TraesCS2B01G346800 chr3A 89.041 73 8 0 1339 1411 208089767 208089695 1.150000e-14 91.6
22 TraesCS2B01G346800 chr5D 92.905 296 19 2 315 609 274466886 274466592 2.140000e-116 429.0
23 TraesCS2B01G346800 chr5D 92.905 296 19 2 315 609 287148590 287148296 2.140000e-116 429.0
24 TraesCS2B01G346800 chr5D 97.826 46 1 0 2399 2444 76972626 76972581 2.490000e-11 80.5
25 TraesCS2B01G346800 chr1A 93.174 293 19 1 318 609 72550888 72550596 2.140000e-116 429.0
26 TraesCS2B01G346800 chr1A 95.833 48 2 0 660 707 42537979 42538026 8.940000e-11 78.7
27 TraesCS2B01G346800 chr1A 94.000 50 3 0 660 709 18150056 18150105 3.220000e-10 76.8
28 TraesCS2B01G346800 chr5B 83.333 114 15 4 79 190 637483883 637483772 5.310000e-18 102.0
29 TraesCS2B01G346800 chr5B 100.000 45 0 0 2400 2444 14368699 14368743 1.920000e-12 84.2
30 TraesCS2B01G346800 chr3D 91.781 73 6 0 1339 1411 170659625 170659697 5.310000e-18 102.0
31 TraesCS2B01G346800 chr3D 100.000 45 0 0 2400 2444 79666603 79666647 1.920000e-12 84.2
32 TraesCS2B01G346800 chr3D 97.917 48 1 0 660 707 607456662 607456709 1.920000e-12 84.2
33 TraesCS2B01G346800 chr3B 89.041 73 8 0 1339 1411 245969780 245969708 1.150000e-14 91.6
34 TraesCS2B01G346800 chr3B 87.671 73 9 0 1339 1411 245964036 245963964 5.340000e-13 86.1
35 TraesCS2B01G346800 chr5A 98.000 50 1 0 660 709 496612542 496612493 1.490000e-13 87.9
36 TraesCS2B01G346800 chr5A 96.000 50 2 0 660 709 470675116 470675165 6.910000e-12 82.4
37 TraesCS2B01G346800 chr6A 100.000 46 0 0 2399 2444 336558114 336558159 5.340000e-13 86.1
38 TraesCS2B01G346800 chr6A 78.448 116 17 6 1111 1222 50034710 50034821 5.380000e-08 69.4
39 TraesCS2B01G346800 chr4D 100.000 45 0 0 2400 2444 504100768 504100724 1.920000e-12 84.2
40 TraesCS2B01G346800 chr1D 100.000 45 0 0 2400 2444 319068531 319068575 1.920000e-12 84.2
41 TraesCS2B01G346800 chr4A 96.000 50 2 0 660 709 354397304 354397353 6.910000e-12 82.4
42 TraesCS2B01G346800 chr1B 96.078 51 1 1 2395 2444 640069775 640069825 6.910000e-12 82.4
43 TraesCS2B01G346800 chr7A 97.826 46 1 0 662 707 110701795 110701750 2.490000e-11 80.5
44 TraesCS2B01G346800 chrUn 83.562 73 9 3 1150 1222 114968257 114968188 6.960000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G346800 chr2B 493565282 493568289 3007 True 5555.000000 5555 100.000000 1 3008 1 chr2B.!!$R2 3007
1 TraesCS2B01G346800 chr2D 420899303 420901839 2536 True 1174.666667 2362 92.111667 1 2989 3 chr2D.!!$R1 2988
2 TraesCS2B01G346800 chr2A 566856441 566860154 3713 True 937.000000 2180 88.948667 709 2989 3 chr2A.!!$R1 2280

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
578 584 0.034337 GGTCACCGTGTCCAAGCTAA 59.966 55.0 9.64 0.0 0.0 3.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2508 2558 0.034337 TGACTACCCTTCGTTGTGCC 59.966 55.0 0.0 0.0 30.06 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 33 1.264288 GAAGTCAGGGTTTCTTGTGCG 59.736 52.381 0.00 0.00 0.00 5.34
33 37 1.453015 AGGGTTTCTTGTGCGTGCA 60.453 52.632 0.00 0.00 0.00 4.57
34 38 1.299089 GGGTTTCTTGTGCGTGCAC 60.299 57.895 17.72 17.72 46.33 4.57
62 66 3.426695 CGAGATTTGGTGCCAGATGTTTC 60.427 47.826 0.00 0.00 0.00 2.78
63 67 3.499338 AGATTTGGTGCCAGATGTTTCA 58.501 40.909 0.00 0.00 0.00 2.69
64 68 3.508793 AGATTTGGTGCCAGATGTTTCAG 59.491 43.478 0.00 0.00 0.00 3.02
70 74 2.349886 GTGCCAGATGTTTCAGATCGAC 59.650 50.000 0.00 0.00 0.00 4.20
74 78 3.111838 CAGATGTTTCAGATCGACCGAG 58.888 50.000 0.00 0.00 0.00 4.63
92 96 0.103208 AGAGGTTCATCGGCGATGAC 59.897 55.000 42.41 34.38 46.87 3.06
143 147 2.200899 ACATGCACAAAAACTTTCCGC 58.799 42.857 0.00 0.00 0.00 5.54
190 195 2.688446 TCGATAGAGGAGCAACGACAAT 59.312 45.455 0.00 0.00 42.67 2.71
254 260 9.579768 TTCGGTGTTTCATGGATATTTTTATTG 57.420 29.630 0.00 0.00 0.00 1.90
255 261 8.744652 TCGGTGTTTCATGGATATTTTTATTGT 58.255 29.630 0.00 0.00 0.00 2.71
266 272 8.424918 TGGATATTTTTATTGTGTTTGGTGTGT 58.575 29.630 0.00 0.00 0.00 3.72
279 285 5.696724 TGTTTGGTGTGTTTTTGTACTTTGG 59.303 36.000 0.00 0.00 0.00 3.28
329 335 5.609533 TTTTTCCTAATCCCTCCGTCTAG 57.390 43.478 0.00 0.00 0.00 2.43
330 336 2.973983 TCCTAATCCCTCCGTCTAGG 57.026 55.000 0.00 0.00 42.97 3.02
331 337 2.141911 TCCTAATCCCTCCGTCTAGGT 58.858 52.381 0.00 0.00 41.99 3.08
332 338 2.158505 TCCTAATCCCTCCGTCTAGGTG 60.159 54.545 0.00 0.00 41.99 4.00
333 339 2.424523 CCTAATCCCTCCGTCTAGGTGT 60.425 54.545 0.00 0.00 41.99 4.16
334 340 1.486211 AATCCCTCCGTCTAGGTGTG 58.514 55.000 0.00 0.00 41.99 3.82
335 341 0.335361 ATCCCTCCGTCTAGGTGTGT 59.665 55.000 0.00 0.00 41.99 3.72
336 342 0.994247 TCCCTCCGTCTAGGTGTGTA 59.006 55.000 0.00 0.00 41.99 2.90
337 343 1.355381 TCCCTCCGTCTAGGTGTGTAA 59.645 52.381 0.00 0.00 41.99 2.41
338 344 1.749634 CCCTCCGTCTAGGTGTGTAAG 59.250 57.143 0.00 0.00 41.99 2.34
339 345 2.444421 CCTCCGTCTAGGTGTGTAAGT 58.556 52.381 0.00 0.00 41.99 2.24
340 346 2.422832 CCTCCGTCTAGGTGTGTAAGTC 59.577 54.545 0.00 0.00 41.99 3.01
341 347 3.079578 CTCCGTCTAGGTGTGTAAGTCA 58.920 50.000 0.00 0.00 41.99 3.41
342 348 3.693807 TCCGTCTAGGTGTGTAAGTCAT 58.306 45.455 0.00 0.00 41.99 3.06
343 349 3.693085 TCCGTCTAGGTGTGTAAGTCATC 59.307 47.826 0.00 0.00 41.99 2.92
344 350 3.695060 CCGTCTAGGTGTGTAAGTCATCT 59.305 47.826 0.00 0.00 34.51 2.90
345 351 4.158025 CCGTCTAGGTGTGTAAGTCATCTT 59.842 45.833 0.00 0.00 35.02 2.40
346 352 5.356190 CCGTCTAGGTGTGTAAGTCATCTTA 59.644 44.000 0.00 0.00 33.66 2.10
347 353 6.677431 CCGTCTAGGTGTGTAAGTCATCTTAC 60.677 46.154 10.12 10.12 43.75 2.34
348 354 9.720809 CCGTCTAGGTGTGTAAGTCATCTTACG 62.721 48.148 11.67 0.00 44.84 3.18
378 384 8.665685 ACTAAATAATCTCAAAACACTTAGGCG 58.334 33.333 0.00 0.00 0.00 5.52
379 385 3.831715 AATCTCAAAACACTTAGGCGC 57.168 42.857 0.00 0.00 0.00 6.53
380 386 1.144969 TCTCAAAACACTTAGGCGCG 58.855 50.000 0.00 0.00 0.00 6.86
381 387 0.165944 CTCAAAACACTTAGGCGCGG 59.834 55.000 8.83 0.00 0.00 6.46
382 388 0.533308 TCAAAACACTTAGGCGCGGT 60.533 50.000 8.83 0.00 0.00 5.68
383 389 0.385473 CAAAACACTTAGGCGCGGTG 60.385 55.000 8.83 9.75 37.05 4.94
384 390 2.125202 AAAACACTTAGGCGCGGTGC 62.125 55.000 8.83 4.64 45.38 5.01
393 399 4.360101 GCGCGGTGCATTAACTTC 57.640 55.556 8.83 0.00 45.45 3.01
394 400 1.794222 GCGCGGTGCATTAACTTCT 59.206 52.632 8.83 0.00 45.45 2.85
395 401 1.003851 GCGCGGTGCATTAACTTCTA 58.996 50.000 8.83 0.00 45.45 2.10
396 402 1.267383 GCGCGGTGCATTAACTTCTAC 60.267 52.381 8.83 0.00 45.45 2.59
397 403 1.326548 CGCGGTGCATTAACTTCTACC 59.673 52.381 0.00 0.00 0.00 3.18
398 404 2.629051 GCGGTGCATTAACTTCTACCT 58.371 47.619 0.00 0.00 0.00 3.08
399 405 2.608090 GCGGTGCATTAACTTCTACCTC 59.392 50.000 0.00 0.00 0.00 3.85
400 406 2.858344 CGGTGCATTAACTTCTACCTCG 59.142 50.000 0.00 0.00 0.00 4.63
401 407 3.675228 CGGTGCATTAACTTCTACCTCGT 60.675 47.826 0.00 0.00 0.00 4.18
402 408 4.251268 GGTGCATTAACTTCTACCTCGTT 58.749 43.478 0.00 0.00 0.00 3.85
403 409 4.694037 GGTGCATTAACTTCTACCTCGTTT 59.306 41.667 0.00 0.00 0.00 3.60
404 410 5.163884 GGTGCATTAACTTCTACCTCGTTTC 60.164 44.000 0.00 0.00 0.00 2.78
405 411 5.638234 GTGCATTAACTTCTACCTCGTTTCT 59.362 40.000 0.00 0.00 0.00 2.52
406 412 6.147328 GTGCATTAACTTCTACCTCGTTTCTT 59.853 38.462 0.00 0.00 0.00 2.52
407 413 6.147164 TGCATTAACTTCTACCTCGTTTCTTG 59.853 38.462 0.00 0.00 0.00 3.02
408 414 6.147328 GCATTAACTTCTACCTCGTTTCTTGT 59.853 38.462 0.00 0.00 0.00 3.16
409 415 7.307811 GCATTAACTTCTACCTCGTTTCTTGTT 60.308 37.037 0.00 0.00 0.00 2.83
410 416 8.557029 CATTAACTTCTACCTCGTTTCTTGTTT 58.443 33.333 0.00 0.00 0.00 2.83
411 417 6.600246 AACTTCTACCTCGTTTCTTGTTTC 57.400 37.500 0.00 0.00 0.00 2.78
412 418 5.915175 ACTTCTACCTCGTTTCTTGTTTCT 58.085 37.500 0.00 0.00 0.00 2.52
413 419 6.346896 ACTTCTACCTCGTTTCTTGTTTCTT 58.653 36.000 0.00 0.00 0.00 2.52
414 420 7.495055 ACTTCTACCTCGTTTCTTGTTTCTTA 58.505 34.615 0.00 0.00 0.00 2.10
415 421 7.437565 ACTTCTACCTCGTTTCTTGTTTCTTAC 59.562 37.037 0.00 0.00 0.00 2.34
416 422 6.808829 TCTACCTCGTTTCTTGTTTCTTACA 58.191 36.000 0.00 0.00 34.12 2.41
417 423 7.439381 TCTACCTCGTTTCTTGTTTCTTACAT 58.561 34.615 0.00 0.00 36.44 2.29
418 424 8.579006 TCTACCTCGTTTCTTGTTTCTTACATA 58.421 33.333 0.00 0.00 36.44 2.29
419 425 9.367444 CTACCTCGTTTCTTGTTTCTTACATAT 57.633 33.333 0.00 0.00 36.44 1.78
420 426 8.252964 ACCTCGTTTCTTGTTTCTTACATATC 57.747 34.615 0.00 0.00 36.44 1.63
421 427 7.876068 ACCTCGTTTCTTGTTTCTTACATATCA 59.124 33.333 0.00 0.00 36.44 2.15
422 428 8.717821 CCTCGTTTCTTGTTTCTTACATATCAA 58.282 33.333 0.00 0.00 36.44 2.57
423 429 9.530129 CTCGTTTCTTGTTTCTTACATATCAAC 57.470 33.333 0.00 0.00 36.44 3.18
424 430 8.500773 TCGTTTCTTGTTTCTTACATATCAACC 58.499 33.333 0.00 0.00 36.44 3.77
425 431 8.286800 CGTTTCTTGTTTCTTACATATCAACCA 58.713 33.333 0.00 0.00 36.44 3.67
426 432 9.959749 GTTTCTTGTTTCTTACATATCAACCAA 57.040 29.630 0.00 0.00 36.44 3.67
428 434 9.567776 TTCTTGTTTCTTACATATCAACCAAGA 57.432 29.630 0.00 0.00 36.44 3.02
429 435 9.567776 TCTTGTTTCTTACATATCAACCAAGAA 57.432 29.630 0.00 0.00 36.44 2.52
430 436 9.831737 CTTGTTTCTTACATATCAACCAAGAAG 57.168 33.333 0.00 0.00 36.78 2.85
431 437 9.567776 TTGTTTCTTACATATCAACCAAGAAGA 57.432 29.630 0.00 0.00 36.78 2.87
432 438 9.567776 TGTTTCTTACATATCAACCAAGAAGAA 57.432 29.630 0.00 0.00 36.78 2.52
436 442 9.958180 TCTTACATATCAACCAAGAAGAAATGA 57.042 29.630 0.00 0.00 0.00 2.57
438 444 7.636150 ACATATCAACCAAGAAGAAATGAGG 57.364 36.000 0.00 0.00 0.00 3.86
439 445 6.604795 ACATATCAACCAAGAAGAAATGAGGG 59.395 38.462 0.00 0.00 0.00 4.30
440 446 3.766545 TCAACCAAGAAGAAATGAGGGG 58.233 45.455 0.00 0.00 0.00 4.79
441 447 3.140144 TCAACCAAGAAGAAATGAGGGGT 59.860 43.478 0.00 0.00 0.00 4.95
442 448 3.160679 ACCAAGAAGAAATGAGGGGTG 57.839 47.619 0.00 0.00 0.00 4.61
443 449 2.447047 ACCAAGAAGAAATGAGGGGTGT 59.553 45.455 0.00 0.00 0.00 4.16
444 450 2.821969 CCAAGAAGAAATGAGGGGTGTG 59.178 50.000 0.00 0.00 0.00 3.82
445 451 2.206576 AGAAGAAATGAGGGGTGTGC 57.793 50.000 0.00 0.00 0.00 4.57
446 452 1.425066 AGAAGAAATGAGGGGTGTGCA 59.575 47.619 0.00 0.00 0.00 4.57
447 453 2.042162 AGAAGAAATGAGGGGTGTGCAT 59.958 45.455 0.00 0.00 0.00 3.96
448 454 1.843368 AGAAATGAGGGGTGTGCATG 58.157 50.000 0.00 0.00 0.00 4.06
449 455 0.174162 GAAATGAGGGGTGTGCATGC 59.826 55.000 11.82 11.82 0.00 4.06
450 456 0.251922 AAATGAGGGGTGTGCATGCT 60.252 50.000 20.33 0.00 0.00 3.79
451 457 0.251922 AATGAGGGGTGTGCATGCTT 60.252 50.000 20.33 0.00 0.00 3.91
452 458 0.251922 ATGAGGGGTGTGCATGCTTT 60.252 50.000 20.33 0.00 0.00 3.51
453 459 0.469705 TGAGGGGTGTGCATGCTTTT 60.470 50.000 20.33 0.00 0.00 2.27
454 460 1.202989 TGAGGGGTGTGCATGCTTTTA 60.203 47.619 20.33 0.00 0.00 1.52
455 461 1.892474 GAGGGGTGTGCATGCTTTTAA 59.108 47.619 20.33 0.00 0.00 1.52
456 462 2.497273 GAGGGGTGTGCATGCTTTTAAT 59.503 45.455 20.33 0.00 0.00 1.40
457 463 2.234414 AGGGGTGTGCATGCTTTTAATG 59.766 45.455 20.33 0.00 0.00 1.90
458 464 2.233431 GGGGTGTGCATGCTTTTAATGA 59.767 45.455 20.33 0.00 0.00 2.57
459 465 3.253230 GGGTGTGCATGCTTTTAATGAC 58.747 45.455 20.33 6.41 0.00 3.06
460 466 3.056607 GGGTGTGCATGCTTTTAATGACT 60.057 43.478 20.33 0.00 0.00 3.41
461 467 4.559153 GGTGTGCATGCTTTTAATGACTT 58.441 39.130 20.33 0.00 0.00 3.01
462 468 4.386652 GGTGTGCATGCTTTTAATGACTTG 59.613 41.667 20.33 0.00 0.00 3.16
463 469 5.221880 GTGTGCATGCTTTTAATGACTTGA 58.778 37.500 20.33 0.00 0.00 3.02
464 470 5.344128 GTGTGCATGCTTTTAATGACTTGAG 59.656 40.000 20.33 0.00 0.00 3.02
465 471 5.241285 TGTGCATGCTTTTAATGACTTGAGA 59.759 36.000 20.33 0.00 0.00 3.27
466 472 6.071784 TGTGCATGCTTTTAATGACTTGAGAT 60.072 34.615 20.33 0.00 0.00 2.75
467 473 6.810182 GTGCATGCTTTTAATGACTTGAGATT 59.190 34.615 20.33 0.00 0.00 2.40
468 474 7.970061 GTGCATGCTTTTAATGACTTGAGATTA 59.030 33.333 20.33 0.00 0.00 1.75
469 475 8.689061 TGCATGCTTTTAATGACTTGAGATTAT 58.311 29.630 20.33 0.00 0.00 1.28
470 476 9.178427 GCATGCTTTTAATGACTTGAGATTATC 57.822 33.333 11.37 0.00 0.00 1.75
483 489 5.469373 TGAGATTATCAAACACGACATGC 57.531 39.130 0.00 0.00 34.02 4.06
484 490 4.934602 TGAGATTATCAAACACGACATGCA 59.065 37.500 0.00 0.00 34.02 3.96
485 491 5.063817 TGAGATTATCAAACACGACATGCAG 59.936 40.000 0.00 0.00 34.02 4.41
486 492 4.937620 AGATTATCAAACACGACATGCAGT 59.062 37.500 0.00 0.00 0.00 4.40
487 493 2.975410 ATCAAACACGACATGCAGTG 57.025 45.000 16.62 16.62 43.46 3.66
488 494 0.943673 TCAAACACGACATGCAGTGG 59.056 50.000 20.60 7.50 42.25 4.00
489 495 0.662619 CAAACACGACATGCAGTGGT 59.337 50.000 20.60 14.15 42.25 4.16
490 496 1.388547 AAACACGACATGCAGTGGTT 58.611 45.000 20.60 18.36 42.73 3.67
491 497 2.248280 AACACGACATGCAGTGGTTA 57.752 45.000 20.60 0.00 42.25 2.85
492 498 1.795768 ACACGACATGCAGTGGTTAG 58.204 50.000 20.60 1.38 42.25 2.34
493 499 1.070134 ACACGACATGCAGTGGTTAGT 59.930 47.619 20.60 1.96 42.25 2.24
494 500 2.143122 CACGACATGCAGTGGTTAGTT 58.857 47.619 11.93 0.00 37.03 2.24
495 501 2.157668 CACGACATGCAGTGGTTAGTTC 59.842 50.000 11.93 0.00 37.03 3.01
496 502 2.224185 ACGACATGCAGTGGTTAGTTCA 60.224 45.455 0.00 0.00 35.47 3.18
497 503 3.002791 CGACATGCAGTGGTTAGTTCAT 58.997 45.455 0.00 0.00 0.00 2.57
498 504 3.436704 CGACATGCAGTGGTTAGTTCATT 59.563 43.478 0.00 0.00 0.00 2.57
499 505 4.669965 CGACATGCAGTGGTTAGTTCATTG 60.670 45.833 0.00 0.00 0.00 2.82
500 506 3.057315 ACATGCAGTGGTTAGTTCATTGC 60.057 43.478 0.00 4.92 44.56 3.56
502 508 3.855689 GCAGTGGTTAGTTCATTGCAT 57.144 42.857 6.68 0.00 44.01 3.96
503 509 3.504863 GCAGTGGTTAGTTCATTGCATG 58.495 45.455 6.68 0.00 44.01 4.06
504 510 3.504863 CAGTGGTTAGTTCATTGCATGC 58.495 45.455 11.82 11.82 0.00 4.06
505 511 3.057386 CAGTGGTTAGTTCATTGCATGCA 60.057 43.478 18.46 18.46 0.00 3.96
506 512 3.573538 AGTGGTTAGTTCATTGCATGCAA 59.426 39.130 33.57 33.57 40.47 4.08
507 513 4.221262 AGTGGTTAGTTCATTGCATGCAAT 59.779 37.500 34.78 34.78 46.35 3.56
508 514 5.418524 AGTGGTTAGTTCATTGCATGCAATA 59.581 36.000 38.08 25.05 43.92 1.90
509 515 5.516339 GTGGTTAGTTCATTGCATGCAATAC 59.484 40.000 38.08 32.43 43.92 1.89
510 516 5.418524 TGGTTAGTTCATTGCATGCAATACT 59.581 36.000 38.08 35.98 43.92 2.12
511 517 6.601217 TGGTTAGTTCATTGCATGCAATACTA 59.399 34.615 38.08 35.10 43.92 1.82
512 518 7.285172 TGGTTAGTTCATTGCATGCAATACTAT 59.715 33.333 34.90 27.15 43.92 2.12
513 519 8.137437 GGTTAGTTCATTGCATGCAATACTATT 58.863 33.333 34.90 25.58 43.92 1.73
520 526 9.844790 TCATTGCATGCAATACTATTAATTAGC 57.155 29.630 38.08 0.00 43.92 3.09
521 527 9.628746 CATTGCATGCAATACTATTAATTAGCA 57.371 29.630 38.08 12.02 43.92 3.49
523 529 9.462174 TTGCATGCAATACTATTAATTAGCAAC 57.538 29.630 28.80 0.00 34.15 4.17
524 530 8.849168 TGCATGCAATACTATTAATTAGCAACT 58.151 29.630 20.30 0.00 34.15 3.16
543 549 8.396272 AGCAACTAAACATTAATGTCTCTTGT 57.604 30.769 21.02 12.39 40.80 3.16
544 550 8.850156 AGCAACTAAACATTAATGTCTCTTGTT 58.150 29.630 21.02 16.59 40.80 2.83
545 551 9.463443 GCAACTAAACATTAATGTCTCTTGTTT 57.537 29.630 21.02 12.76 40.80 2.83
551 557 8.697507 AACATTAATGTCTCTTGTTTTCTCCT 57.302 30.769 21.02 0.00 40.80 3.69
552 558 8.697507 ACATTAATGTCTCTTGTTTTCTCCTT 57.302 30.769 15.47 0.00 35.87 3.36
553 559 8.787852 ACATTAATGTCTCTTGTTTTCTCCTTC 58.212 33.333 15.47 0.00 35.87 3.46
554 560 9.007901 CATTAATGTCTCTTGTTTTCTCCTTCT 57.992 33.333 7.32 0.00 0.00 2.85
555 561 8.608844 TTAATGTCTCTTGTTTTCTCCTTCTC 57.391 34.615 0.00 0.00 0.00 2.87
556 562 4.962155 TGTCTCTTGTTTTCTCCTTCTCC 58.038 43.478 0.00 0.00 0.00 3.71
557 563 4.656112 TGTCTCTTGTTTTCTCCTTCTCCT 59.344 41.667 0.00 0.00 0.00 3.69
558 564 5.131142 TGTCTCTTGTTTTCTCCTTCTCCTT 59.869 40.000 0.00 0.00 0.00 3.36
559 565 5.468409 GTCTCTTGTTTTCTCCTTCTCCTTG 59.532 44.000 0.00 0.00 0.00 3.61
560 566 4.718961 TCTTGTTTTCTCCTTCTCCTTGG 58.281 43.478 0.00 0.00 0.00 3.61
561 567 4.166144 TCTTGTTTTCTCCTTCTCCTTGGT 59.834 41.667 0.00 0.00 0.00 3.67
562 568 4.086706 TGTTTTCTCCTTCTCCTTGGTC 57.913 45.455 0.00 0.00 0.00 4.02
563 569 3.458118 TGTTTTCTCCTTCTCCTTGGTCA 59.542 43.478 0.00 0.00 0.00 4.02
564 570 3.771577 TTTCTCCTTCTCCTTGGTCAC 57.228 47.619 0.00 0.00 0.00 3.67
565 571 1.645710 TCTCCTTCTCCTTGGTCACC 58.354 55.000 0.00 0.00 0.00 4.02
566 572 0.247736 CTCCTTCTCCTTGGTCACCG 59.752 60.000 0.00 0.00 0.00 4.94
567 573 0.471211 TCCTTCTCCTTGGTCACCGT 60.471 55.000 0.00 0.00 0.00 4.83
568 574 0.320771 CCTTCTCCTTGGTCACCGTG 60.321 60.000 0.00 0.00 0.00 4.94
569 575 0.393077 CTTCTCCTTGGTCACCGTGT 59.607 55.000 0.00 0.00 0.00 4.49
570 576 0.391597 TTCTCCTTGGTCACCGTGTC 59.608 55.000 0.00 0.00 0.00 3.67
571 577 1.004918 CTCCTTGGTCACCGTGTCC 60.005 63.158 7.77 7.77 0.00 4.02
572 578 1.754380 CTCCTTGGTCACCGTGTCCA 61.754 60.000 12.80 12.80 33.88 4.02
573 579 1.147376 CCTTGGTCACCGTGTCCAA 59.853 57.895 23.36 23.36 41.86 3.53
574 580 4.868026 TTGGTCACCGTGTCCAAG 57.132 55.556 21.74 0.00 39.86 3.61
575 581 1.525077 TTGGTCACCGTGTCCAAGC 60.525 57.895 21.74 3.61 39.86 4.01
576 582 1.978455 TTGGTCACCGTGTCCAAGCT 61.978 55.000 21.74 0.00 39.86 3.74
577 583 1.116536 TGGTCACCGTGTCCAAGCTA 61.117 55.000 14.22 0.00 32.82 3.32
578 584 0.034337 GGTCACCGTGTCCAAGCTAA 59.966 55.000 9.64 0.00 0.00 3.09
579 585 1.338769 GGTCACCGTGTCCAAGCTAAT 60.339 52.381 9.64 0.00 0.00 1.73
580 586 2.093869 GGTCACCGTGTCCAAGCTAATA 60.094 50.000 9.64 0.00 0.00 0.98
581 587 3.431766 GGTCACCGTGTCCAAGCTAATAT 60.432 47.826 9.64 0.00 0.00 1.28
582 588 3.555956 GTCACCGTGTCCAAGCTAATATG 59.444 47.826 0.00 0.00 0.00 1.78
583 589 3.449377 TCACCGTGTCCAAGCTAATATGA 59.551 43.478 0.00 0.00 0.00 2.15
584 590 3.555956 CACCGTGTCCAAGCTAATATGAC 59.444 47.826 0.00 0.00 0.00 3.06
585 591 3.451178 ACCGTGTCCAAGCTAATATGACT 59.549 43.478 0.00 0.00 0.00 3.41
586 592 4.081087 ACCGTGTCCAAGCTAATATGACTT 60.081 41.667 0.00 0.00 0.00 3.01
587 593 5.128171 ACCGTGTCCAAGCTAATATGACTTA 59.872 40.000 0.00 0.00 0.00 2.24
588 594 5.462398 CCGTGTCCAAGCTAATATGACTTAC 59.538 44.000 0.00 0.00 0.00 2.34
589 595 6.273825 CGTGTCCAAGCTAATATGACTTACT 58.726 40.000 0.00 0.00 0.00 2.24
590 596 6.418226 CGTGTCCAAGCTAATATGACTTACTC 59.582 42.308 0.00 0.00 0.00 2.59
591 597 7.265673 GTGTCCAAGCTAATATGACTTACTCA 58.734 38.462 0.00 0.00 0.00 3.41
592 598 7.222999 GTGTCCAAGCTAATATGACTTACTCAC 59.777 40.741 0.00 0.00 0.00 3.51
593 599 6.702282 GTCCAAGCTAATATGACTTACTCACC 59.298 42.308 0.00 0.00 0.00 4.02
594 600 6.611642 TCCAAGCTAATATGACTTACTCACCT 59.388 38.462 0.00 0.00 0.00 4.00
595 601 7.783119 TCCAAGCTAATATGACTTACTCACCTA 59.217 37.037 0.00 0.00 0.00 3.08
596 602 8.085296 CCAAGCTAATATGACTTACTCACCTAG 58.915 40.741 0.00 0.00 0.00 3.02
597 603 8.851145 CAAGCTAATATGACTTACTCACCTAGA 58.149 37.037 0.00 0.00 0.00 2.43
598 604 8.398878 AGCTAATATGACTTACTCACCTAGAC 57.601 38.462 0.00 0.00 0.00 2.59
599 605 7.173562 AGCTAATATGACTTACTCACCTAGACG 59.826 40.741 0.00 0.00 0.00 4.18
600 606 6.636562 AATATGACTTACTCACCTAGACGG 57.363 41.667 0.00 0.00 39.35 4.79
601 607 3.708403 TGACTTACTCACCTAGACGGA 57.292 47.619 0.00 0.00 36.31 4.69
602 608 3.607741 TGACTTACTCACCTAGACGGAG 58.392 50.000 0.00 0.00 36.31 4.63
603 609 2.944349 GACTTACTCACCTAGACGGAGG 59.056 54.545 0.00 0.00 42.89 4.30
604 610 2.575279 ACTTACTCACCTAGACGGAGGA 59.425 50.000 7.23 0.00 39.15 3.71
605 611 3.009916 ACTTACTCACCTAGACGGAGGAA 59.990 47.826 7.23 0.00 39.15 3.36
606 612 2.131776 ACTCACCTAGACGGAGGAAG 57.868 55.000 7.23 6.60 39.15 3.46
607 613 1.355043 ACTCACCTAGACGGAGGAAGT 59.645 52.381 7.23 7.11 39.15 3.01
613 619 5.047519 TCACCTAGACGGAGGAAGTAAAAAG 60.048 44.000 7.23 0.00 39.15 2.27
623 629 5.416013 GGAGGAAGTAAAAAGGAAGTCATGG 59.584 44.000 0.00 0.00 0.00 3.66
667 676 4.792068 TCCACTCAGGAGTTTGAACATTT 58.208 39.130 0.00 0.00 43.07 2.32
668 677 5.200483 TCCACTCAGGAGTTTGAACATTTT 58.800 37.500 0.00 0.00 43.07 1.82
671 680 6.263168 CCACTCAGGAGTTTGAACATTTTACT 59.737 38.462 0.00 0.00 40.20 2.24
673 682 8.836413 CACTCAGGAGTTTGAACATTTTACTAA 58.164 33.333 0.00 0.00 40.20 2.24
676 685 9.179909 TCAGGAGTTTGAACATTTTACTAACAA 57.820 29.630 0.00 0.00 0.00 2.83
677 686 9.796120 CAGGAGTTTGAACATTTTACTAACAAA 57.204 29.630 0.00 0.00 0.00 2.83
704 713 9.277783 ACTAACATACAATCTATTGAAGATGCC 57.722 33.333 9.60 0.00 44.56 4.40
705 714 7.516198 AACATACAATCTATTGAAGATGCCC 57.484 36.000 9.60 0.00 44.56 5.36
706 715 6.845908 ACATACAATCTATTGAAGATGCCCT 58.154 36.000 9.60 0.00 44.56 5.19
707 716 7.977818 ACATACAATCTATTGAAGATGCCCTA 58.022 34.615 9.60 0.00 44.56 3.53
751 760 0.179045 CAGGAACATCCGTCCATCCC 60.179 60.000 0.00 0.00 42.75 3.85
767 776 3.522731 CCTCCTCGAGCTCCACCG 61.523 72.222 6.99 0.00 0.00 4.94
787 796 2.877691 GTTGCGGCAGGAACATCC 59.122 61.111 15.82 0.00 46.22 3.51
788 797 2.745884 TTGCGGCAGGAACATCCG 60.746 61.111 1.67 0.00 42.75 4.18
825 834 2.306805 CGTTCCCCCTAACCTTAAACCT 59.693 50.000 0.00 0.00 0.00 3.50
880 889 1.139058 CCCACTAATCCTCCCACTTCG 59.861 57.143 0.00 0.00 0.00 3.79
883 893 0.106894 CTAATCCTCCCACTTCGCCC 59.893 60.000 0.00 0.00 0.00 6.13
894 909 0.321996 ACTTCGCCCTTCTTCTCCAC 59.678 55.000 0.00 0.00 0.00 4.02
895 910 0.610687 CTTCGCCCTTCTTCTCCACT 59.389 55.000 0.00 0.00 0.00 4.00
901 916 1.352083 CCTTCTTCTCCACTCCACCA 58.648 55.000 0.00 0.00 0.00 4.17
995 1019 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
996 1020 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
997 1021 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1263 1287 3.213402 GTCTCCCCGCTCTCCTCG 61.213 72.222 0.00 0.00 0.00 4.63
1299 1323 2.892425 GCCGCGGAGATCAACCTG 60.892 66.667 33.48 0.00 0.00 4.00
1660 1684 0.539438 CAACTACAAGGGCAAGGGCA 60.539 55.000 0.00 0.00 43.71 5.36
2006 2033 0.799917 CAGTGCGACATCCTCGACTG 60.800 60.000 0.00 0.00 46.14 3.51
2008 2035 0.798771 GTGCGACATCCTCGACTGAC 60.799 60.000 0.00 0.00 46.14 3.51
2009 2036 1.226717 GCGACATCCTCGACTGACC 60.227 63.158 0.00 0.00 46.14 4.02
2010 2037 1.062685 CGACATCCTCGACTGACCG 59.937 63.158 0.00 0.00 46.14 4.79
2011 2038 1.433879 GACATCCTCGACTGACCGG 59.566 63.158 0.00 0.00 0.00 5.28
2012 2039 1.001269 ACATCCTCGACTGACCGGA 60.001 57.895 9.46 0.00 0.00 5.14
2016 2043 3.432588 CTCGACTGACCGGAGCGT 61.433 66.667 9.46 0.17 0.00 5.07
2017 2044 3.669036 CTCGACTGACCGGAGCGTG 62.669 68.421 9.46 1.79 0.00 5.34
2019 2046 4.057428 GACTGACCGGAGCGTGCT 62.057 66.667 9.46 0.00 0.00 4.40
2020 2047 2.675423 ACTGACCGGAGCGTGCTA 60.675 61.111 9.46 0.00 0.00 3.49
2021 2048 2.202623 CTGACCGGAGCGTGCTAC 60.203 66.667 9.46 0.00 0.00 3.58
2022 2049 2.675423 TGACCGGAGCGTGCTACT 60.675 61.111 9.46 0.00 0.00 2.57
2025 2052 4.135153 CCGGAGCGTGCTACTGCT 62.135 66.667 0.00 0.00 45.90 4.24
2026 2053 2.771639 CCGGAGCGTGCTACTGCTA 61.772 63.158 0.00 0.00 42.60 3.49
2027 2054 1.586564 CGGAGCGTGCTACTGCTAC 60.587 63.158 2.07 0.00 42.60 3.58
2029 2056 1.586564 GAGCGTGCTACTGCTACGG 60.587 63.158 0.00 0.00 42.60 4.02
2030 2057 2.582498 GCGTGCTACTGCTACGGG 60.582 66.667 0.00 0.00 40.90 5.28
2031 2058 2.882876 CGTGCTACTGCTACGGGT 59.117 61.111 0.00 0.00 38.79 5.28
2032 2059 1.516386 CGTGCTACTGCTACGGGTG 60.516 63.158 0.00 0.00 38.79 4.61
2033 2060 1.810030 GTGCTACTGCTACGGGTGC 60.810 63.158 0.00 0.00 40.48 5.01
2034 2061 2.202892 GCTACTGCTACGGGTGCC 60.203 66.667 0.00 0.00 36.03 5.01
2064 2105 3.078837 GCTTAGTCCGGTGAAAATTGGA 58.921 45.455 0.00 0.00 0.00 3.53
2067 2108 0.519961 GTCCGGTGAAAATTGGACGG 59.480 55.000 0.00 0.00 41.26 4.79
2068 2109 0.108963 TCCGGTGAAAATTGGACGGT 59.891 50.000 0.00 0.00 41.82 4.83
2069 2110 1.347050 TCCGGTGAAAATTGGACGGTA 59.653 47.619 0.00 0.00 41.82 4.02
2070 2111 1.465777 CCGGTGAAAATTGGACGGTAC 59.534 52.381 0.00 0.00 36.78 3.34
2102 2143 1.336755 GATTTTGGTGTGTGTCCGCTT 59.663 47.619 0.00 0.00 0.00 4.68
2119 2162 5.570589 GTCCGCTTTGATTTTCTGAATGAAG 59.429 40.000 0.00 0.00 35.89 3.02
2121 2164 5.922544 CCGCTTTGATTTTCTGAATGAAGTT 59.077 36.000 0.00 0.00 35.89 2.66
2130 2173 7.467557 TTTTCTGAATGAAGTTGTGAATTGC 57.532 32.000 0.00 0.00 35.89 3.56
2131 2174 4.786507 TCTGAATGAAGTTGTGAATTGCG 58.213 39.130 0.00 0.00 0.00 4.85
2132 2175 4.514816 TCTGAATGAAGTTGTGAATTGCGA 59.485 37.500 0.00 0.00 0.00 5.10
2133 2176 4.536065 TGAATGAAGTTGTGAATTGCGAC 58.464 39.130 0.00 0.00 0.00 5.19
2134 2177 2.661504 TGAAGTTGTGAATTGCGACG 57.338 45.000 0.00 0.00 0.00 5.12
2135 2178 1.318251 GAAGTTGTGAATTGCGACGC 58.682 50.000 14.19 14.19 0.00 5.19
2136 2179 0.944386 AAGTTGTGAATTGCGACGCT 59.056 45.000 22.08 0.00 0.00 5.07
2137 2180 0.944386 AGTTGTGAATTGCGACGCTT 59.056 45.000 22.08 7.81 0.00 4.68
2138 2181 1.333619 AGTTGTGAATTGCGACGCTTT 59.666 42.857 22.08 14.40 0.00 3.51
2139 2182 2.116366 GTTGTGAATTGCGACGCTTTT 58.884 42.857 22.08 14.03 0.00 2.27
2140 2183 2.031037 TGTGAATTGCGACGCTTTTC 57.969 45.000 22.08 21.38 0.00 2.29
2141 2184 0.967803 GTGAATTGCGACGCTTTTCG 59.032 50.000 22.08 0.00 45.38 3.46
2142 2185 0.110419 TGAATTGCGACGCTTTTCGG 60.110 50.000 22.08 0.00 43.86 4.30
2143 2186 1.395805 GAATTGCGACGCTTTTCGGC 61.396 55.000 22.08 0.34 44.49 5.54
2144 2187 2.796245 AATTGCGACGCTTTTCGGCC 62.796 55.000 22.08 0.00 45.36 6.13
2145 2188 4.980805 TGCGACGCTTTTCGGCCT 62.981 61.111 22.08 0.00 45.36 5.19
2146 2189 3.723348 GCGACGCTTTTCGGCCTT 61.723 61.111 13.73 0.00 45.36 4.35
2147 2190 2.173382 CGACGCTTTTCGGCCTTG 59.827 61.111 0.00 0.00 45.36 3.61
2148 2191 2.604174 CGACGCTTTTCGGCCTTGT 61.604 57.895 0.00 0.00 45.36 3.16
2149 2192 1.082104 GACGCTTTTCGGCCTTGTG 60.082 57.895 0.00 0.00 41.34 3.33
2150 2193 1.503818 GACGCTTTTCGGCCTTGTGA 61.504 55.000 0.00 0.00 41.34 3.58
2151 2194 1.098712 ACGCTTTTCGGCCTTGTGAA 61.099 50.000 0.00 0.00 43.86 3.18
2152 2195 0.660300 CGCTTTTCGGCCTTGTGAAC 60.660 55.000 0.00 0.00 33.78 3.18
2153 2196 0.668535 GCTTTTCGGCCTTGTGAACT 59.331 50.000 0.00 0.00 0.00 3.01
2154 2197 1.600413 GCTTTTCGGCCTTGTGAACTG 60.600 52.381 0.00 0.00 0.00 3.16
2155 2198 1.676006 CTTTTCGGCCTTGTGAACTGT 59.324 47.619 0.00 0.00 0.00 3.55
2156 2199 1.021202 TTTCGGCCTTGTGAACTGTG 58.979 50.000 0.00 0.00 0.00 3.66
2157 2200 1.444119 TTCGGCCTTGTGAACTGTGC 61.444 55.000 0.00 0.00 0.00 4.57
2173 2216 0.095417 GTGCGATGCTTTTCGGTCTC 59.905 55.000 6.45 0.00 39.49 3.36
2246 2289 2.325082 CGTTGGCACCTCCCTTTCG 61.325 63.158 0.00 0.00 0.00 3.46
2267 2310 3.670055 CGGTTACACAAGTCGTTATCGTT 59.330 43.478 0.00 0.00 38.33 3.85
2284 2328 0.798776 GTTGCTGGACTGGTTCATCG 59.201 55.000 0.00 0.00 0.00 3.84
2313 2358 7.148035 TGCATGCATTGTTACTTTCAGTCATAT 60.148 33.333 18.46 0.00 0.00 1.78
2314 2359 8.344831 GCATGCATTGTTACTTTCAGTCATATA 58.655 33.333 14.21 0.00 0.00 0.86
2315 2360 9.655769 CATGCATTGTTACTTTCAGTCATATAC 57.344 33.333 0.00 0.00 0.00 1.47
2316 2361 9.618890 ATGCATTGTTACTTTCAGTCATATACT 57.381 29.630 0.00 0.00 39.81 2.12
2321 2366 9.865321 TTGTTACTTTCAGTCATATACTACCAC 57.135 33.333 0.00 0.00 35.76 4.16
2322 2367 9.251440 TGTTACTTTCAGTCATATACTACCACT 57.749 33.333 0.00 0.00 35.76 4.00
2343 2388 2.805845 ACATACATTCCGCGTAGTCAC 58.194 47.619 4.92 0.00 0.00 3.67
2351 2396 0.732880 CCGCGTAGTCACCACAGAAG 60.733 60.000 4.92 0.00 0.00 2.85
2382 2427 2.411701 CGCCGAATGCTCCTCGTA 59.588 61.111 0.00 0.00 38.05 3.43
2386 2436 1.066605 GCCGAATGCTCCTCGTAGTTA 59.933 52.381 0.00 0.00 36.87 2.24
2387 2437 2.728922 CCGAATGCTCCTCGTAGTTAC 58.271 52.381 0.00 0.00 34.46 2.50
2398 2448 1.186030 CGTAGTTACGCAGCTAACGG 58.814 55.000 12.38 0.00 43.14 4.44
2399 2449 1.553308 GTAGTTACGCAGCTAACGGG 58.447 55.000 12.38 0.00 32.29 5.28
2400 2450 1.133025 GTAGTTACGCAGCTAACGGGA 59.867 52.381 12.38 0.00 32.29 5.14
2401 2451 0.172803 AGTTACGCAGCTAACGGGAG 59.827 55.000 12.38 0.00 32.29 4.30
2402 2452 0.804933 GTTACGCAGCTAACGGGAGG 60.805 60.000 12.38 0.00 34.00 4.30
2403 2453 0.966875 TTACGCAGCTAACGGGAGGA 60.967 55.000 12.38 0.00 34.00 3.71
2404 2454 1.660560 TACGCAGCTAACGGGAGGAC 61.661 60.000 12.38 0.00 34.00 3.85
2405 2455 2.202756 GCAGCTAACGGGAGGACG 60.203 66.667 0.00 0.00 40.31 4.79
2406 2456 2.494918 CAGCTAACGGGAGGACGG 59.505 66.667 0.00 0.00 38.39 4.79
2407 2457 2.758737 AGCTAACGGGAGGACGGG 60.759 66.667 0.00 0.00 38.39 5.28
2408 2458 3.846430 GCTAACGGGAGGACGGGG 61.846 72.222 0.00 0.00 38.39 5.73
2409 2459 3.846430 CTAACGGGAGGACGGGGC 61.846 72.222 0.00 0.00 38.39 5.80
2446 2496 4.269523 AGCTGGGGTTGCTGCGAA 62.270 61.111 0.00 0.00 39.56 4.70
2447 2497 3.741476 GCTGGGGTTGCTGCGAAG 61.741 66.667 0.00 0.00 0.00 3.79
2448 2498 2.281761 CTGGGGTTGCTGCGAAGT 60.282 61.111 0.00 0.00 0.00 3.01
2449 2499 1.898574 CTGGGGTTGCTGCGAAGTT 60.899 57.895 0.00 0.00 0.00 2.66
2450 2500 1.454847 TGGGGTTGCTGCGAAGTTT 60.455 52.632 0.00 0.00 0.00 2.66
2451 2501 1.285950 GGGGTTGCTGCGAAGTTTC 59.714 57.895 0.00 0.00 0.00 2.78
2452 2502 1.172812 GGGGTTGCTGCGAAGTTTCT 61.173 55.000 0.00 0.00 0.00 2.52
2453 2503 0.668535 GGGTTGCTGCGAAGTTTCTT 59.331 50.000 0.00 0.00 0.00 2.52
2454 2504 1.335051 GGGTTGCTGCGAAGTTTCTTC 60.335 52.381 0.00 0.03 0.00 2.87
2455 2505 1.604278 GGTTGCTGCGAAGTTTCTTCT 59.396 47.619 7.70 0.00 0.00 2.85
2456 2506 2.806244 GGTTGCTGCGAAGTTTCTTCTA 59.194 45.455 7.70 0.00 0.00 2.10
2457 2507 3.437049 GGTTGCTGCGAAGTTTCTTCTAT 59.563 43.478 7.70 0.00 0.00 1.98
2458 2508 4.630069 GGTTGCTGCGAAGTTTCTTCTATA 59.370 41.667 7.70 0.00 0.00 1.31
2459 2509 5.121768 GGTTGCTGCGAAGTTTCTTCTATAA 59.878 40.000 7.70 0.00 0.00 0.98
2460 2510 6.348213 GGTTGCTGCGAAGTTTCTTCTATAAA 60.348 38.462 7.70 0.00 0.00 1.40
2461 2511 6.795098 TGCTGCGAAGTTTCTTCTATAAAA 57.205 33.333 7.70 0.00 0.00 1.52
2462 2512 6.831769 TGCTGCGAAGTTTCTTCTATAAAAG 58.168 36.000 7.70 0.00 0.00 2.27
2463 2513 5.734963 GCTGCGAAGTTTCTTCTATAAAAGC 59.265 40.000 7.70 3.23 0.00 3.51
2464 2514 6.178239 TGCGAAGTTTCTTCTATAAAAGCC 57.822 37.500 7.70 0.00 0.00 4.35
2465 2515 5.123344 TGCGAAGTTTCTTCTATAAAAGCCC 59.877 40.000 7.70 0.00 0.00 5.19
2466 2516 5.354513 GCGAAGTTTCTTCTATAAAAGCCCT 59.645 40.000 7.70 0.00 0.00 5.19
2467 2517 6.127980 GCGAAGTTTCTTCTATAAAAGCCCTT 60.128 38.462 7.70 0.00 0.00 3.95
2468 2518 7.244192 CGAAGTTTCTTCTATAAAAGCCCTTG 58.756 38.462 7.70 0.00 0.00 3.61
2469 2519 7.468141 AAGTTTCTTCTATAAAAGCCCTTGG 57.532 36.000 0.00 0.00 0.00 3.61
2470 2520 5.952347 AGTTTCTTCTATAAAAGCCCTTGGG 59.048 40.000 0.32 0.32 0.00 4.12
2471 2521 5.530176 TTCTTCTATAAAAGCCCTTGGGT 57.470 39.130 7.61 0.00 33.45 4.51
2472 2522 5.530176 TCTTCTATAAAAGCCCTTGGGTT 57.470 39.130 7.61 0.00 46.01 4.11
2473 2523 5.261216 TCTTCTATAAAAGCCCTTGGGTTG 58.739 41.667 7.61 0.00 43.04 3.77
2474 2524 3.976015 TCTATAAAAGCCCTTGGGTTGG 58.024 45.455 7.61 0.00 43.04 3.77
2475 2525 2.713828 ATAAAAGCCCTTGGGTTGGT 57.286 45.000 7.61 0.00 43.04 3.67
2476 2526 2.003937 TAAAAGCCCTTGGGTTGGTC 57.996 50.000 7.61 0.00 43.04 4.02
2477 2527 0.264657 AAAAGCCCTTGGGTTGGTCT 59.735 50.000 7.61 0.00 43.04 3.85
2478 2528 0.264657 AAAGCCCTTGGGTTGGTCTT 59.735 50.000 7.61 0.00 43.04 3.01
2479 2529 1.154430 AAGCCCTTGGGTTGGTCTTA 58.846 50.000 7.61 0.00 42.19 2.10
2480 2530 1.382914 AGCCCTTGGGTTGGTCTTAT 58.617 50.000 7.61 0.00 0.00 1.73
2481 2531 1.716503 AGCCCTTGGGTTGGTCTTATT 59.283 47.619 7.61 0.00 0.00 1.40
2482 2532 2.111792 AGCCCTTGGGTTGGTCTTATTT 59.888 45.455 7.61 0.00 0.00 1.40
2483 2533 2.233676 GCCCTTGGGTTGGTCTTATTTG 59.766 50.000 7.61 0.00 0.00 2.32
2484 2534 3.506398 CCCTTGGGTTGGTCTTATTTGT 58.494 45.455 0.00 0.00 0.00 2.83
2485 2535 3.258123 CCCTTGGGTTGGTCTTATTTGTG 59.742 47.826 0.00 0.00 0.00 3.33
2508 2558 2.733593 GCTAACGGCGGCGGATAG 60.734 66.667 35.05 31.67 0.00 2.08
2517 2567 2.185867 GGCGGATAGGCACAACGA 59.814 61.111 0.00 0.00 45.92 3.85
2520 2570 1.429148 GCGGATAGGCACAACGAAGG 61.429 60.000 0.00 0.00 0.00 3.46
2763 4389 2.487762 TGCATGGACGGTCTGATTTTTC 59.512 45.455 8.23 0.00 0.00 2.29
2770 4396 3.670625 ACGGTCTGATTTTTCCGATTCA 58.329 40.909 10.18 0.00 44.86 2.57
2778 4404 4.280677 TGATTTTTCCGATTCAGTGCCTTT 59.719 37.500 0.00 0.00 0.00 3.11
2807 4442 6.883756 TGTGACAGTTTGGATAGCAAATGATA 59.116 34.615 0.00 0.00 0.00 2.15
2818 4453 4.888326 AGCAAATGATAAGGCCAAACAA 57.112 36.364 5.01 0.00 0.00 2.83
2822 4457 5.818857 GCAAATGATAAGGCCAAACAATCAT 59.181 36.000 5.01 8.85 38.58 2.45
2830 4465 3.196254 AGGCCAAACAATCATGTCCATTC 59.804 43.478 5.01 0.00 39.40 2.67
2858 4493 2.032054 CCAATAGTTCGCGTCATTGCAT 59.968 45.455 5.77 0.00 34.15 3.96
2966 4601 5.675538 ACCAGTTCCTGCTAGTAATTCATC 58.324 41.667 0.00 0.00 0.00 2.92
2972 4607 7.281774 AGTTCCTGCTAGTAATTCATCATGTTG 59.718 37.037 0.00 0.00 0.00 3.33
2980 4615 3.770263 ATTCATCATGTTGAACGCTGG 57.230 42.857 18.98 0.00 38.37 4.85
2989 4624 2.301870 TGTTGAACGCTGGTCTATCCTT 59.698 45.455 0.00 0.00 37.07 3.36
2990 4625 2.930682 GTTGAACGCTGGTCTATCCTTC 59.069 50.000 0.00 0.00 37.07 3.46
2991 4626 2.457598 TGAACGCTGGTCTATCCTTCT 58.542 47.619 0.00 0.00 37.07 2.85
2992 4627 3.628008 TGAACGCTGGTCTATCCTTCTA 58.372 45.455 0.00 0.00 37.07 2.10
2993 4628 4.021229 TGAACGCTGGTCTATCCTTCTAA 58.979 43.478 0.00 0.00 37.07 2.10
2994 4629 4.142227 TGAACGCTGGTCTATCCTTCTAAC 60.142 45.833 0.00 0.00 37.07 2.34
2995 4630 3.362706 ACGCTGGTCTATCCTTCTAACA 58.637 45.455 0.00 0.00 37.07 2.41
2996 4631 3.381908 ACGCTGGTCTATCCTTCTAACAG 59.618 47.826 0.00 0.00 37.07 3.16
2997 4632 3.632604 CGCTGGTCTATCCTTCTAACAGA 59.367 47.826 0.00 0.00 37.07 3.41
2998 4633 4.498345 CGCTGGTCTATCCTTCTAACAGAC 60.498 50.000 0.00 0.00 35.87 3.51
2999 4634 4.498345 GCTGGTCTATCCTTCTAACAGACG 60.498 50.000 0.00 0.00 37.17 4.18
3000 4635 3.952323 TGGTCTATCCTTCTAACAGACGG 59.048 47.826 0.00 0.00 37.17 4.79
3001 4636 3.243468 GGTCTATCCTTCTAACAGACGGC 60.243 52.174 0.00 0.00 37.17 5.68
3002 4637 2.957006 TCTATCCTTCTAACAGACGGCC 59.043 50.000 0.00 0.00 33.97 6.13
3003 4638 0.831307 ATCCTTCTAACAGACGGCCC 59.169 55.000 0.00 0.00 33.97 5.80
3004 4639 0.543410 TCCTTCTAACAGACGGCCCA 60.543 55.000 0.00 0.00 33.97 5.36
3005 4640 0.323629 CCTTCTAACAGACGGCCCAA 59.676 55.000 0.00 0.00 26.29 4.12
3006 4641 1.065418 CCTTCTAACAGACGGCCCAAT 60.065 52.381 0.00 0.00 26.29 3.16
3007 4642 2.169769 CCTTCTAACAGACGGCCCAATA 59.830 50.000 0.00 0.00 26.29 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 1.008538 GCACGCACAAGAAACCCTG 60.009 57.895 0.00 0.00 0.00 4.45
29 33 2.380410 AAATCTCGCCGTCGTGCAC 61.380 57.895 6.82 6.82 36.96 4.57
33 37 1.736645 CACCAAATCTCGCCGTCGT 60.737 57.895 0.00 0.00 36.96 4.34
34 38 3.081133 CACCAAATCTCGCCGTCG 58.919 61.111 0.00 0.00 0.00 5.12
38 42 0.749454 ATCTGGCACCAAATCTCGCC 60.749 55.000 0.00 0.00 45.11 5.54
40 44 1.742761 ACATCTGGCACCAAATCTCG 58.257 50.000 0.00 0.00 0.00 4.04
62 66 1.095600 TGAACCTCTCGGTCGATCTG 58.904 55.000 0.00 0.00 44.73 2.90
63 67 1.950909 GATGAACCTCTCGGTCGATCT 59.049 52.381 0.00 0.00 44.73 2.75
64 68 1.334239 CGATGAACCTCTCGGTCGATC 60.334 57.143 0.00 0.00 44.73 3.69
87 91 2.202987 CCTGGAGCCGCAGTCATC 60.203 66.667 0.00 0.00 0.00 2.92
143 147 1.579698 CCTGATCTTGCCGATGACAG 58.420 55.000 0.00 0.00 30.84 3.51
165 170 2.355132 TCGTTGCTCCTCTATCGAAGTC 59.645 50.000 0.00 0.00 0.00 3.01
185 190 1.425412 ACCGTTGACACGCTATTGTC 58.575 50.000 3.65 3.65 45.72 3.18
190 195 1.359833 ACGAACCGTTGACACGCTA 59.640 52.632 0.00 0.00 45.72 4.26
254 260 6.346999 CCAAAGTACAAAAACACACCAAACAC 60.347 38.462 0.00 0.00 0.00 3.32
255 261 5.696724 CCAAAGTACAAAAACACACCAAACA 59.303 36.000 0.00 0.00 0.00 2.83
309 315 3.052338 ACCTAGACGGAGGGATTAGGAAA 60.052 47.826 3.07 0.00 41.36 3.13
310 316 2.517127 ACCTAGACGGAGGGATTAGGAA 59.483 50.000 3.07 0.00 41.36 3.36
312 318 2.240279 CACCTAGACGGAGGGATTAGG 58.760 57.143 5.42 0.00 41.36 2.69
313 319 2.623889 CACACCTAGACGGAGGGATTAG 59.376 54.545 5.42 0.00 41.36 1.73
314 320 2.024655 ACACACCTAGACGGAGGGATTA 60.025 50.000 5.42 0.00 41.36 1.75
315 321 1.273098 ACACACCTAGACGGAGGGATT 60.273 52.381 5.42 0.00 41.36 3.01
316 322 0.335361 ACACACCTAGACGGAGGGAT 59.665 55.000 5.42 0.00 41.36 3.85
317 323 0.994247 TACACACCTAGACGGAGGGA 59.006 55.000 5.42 0.00 41.36 4.20
318 324 1.749634 CTTACACACCTAGACGGAGGG 59.250 57.143 5.42 0.00 41.36 4.30
319 325 2.422832 GACTTACACACCTAGACGGAGG 59.577 54.545 0.00 0.00 42.89 4.30
320 326 3.079578 TGACTTACACACCTAGACGGAG 58.920 50.000 0.00 0.00 36.31 4.63
321 327 3.144657 TGACTTACACACCTAGACGGA 57.855 47.619 0.00 0.00 36.31 4.69
322 328 3.695060 AGATGACTTACACACCTAGACGG 59.305 47.826 0.00 0.00 39.35 4.79
323 329 4.966965 AGATGACTTACACACCTAGACG 57.033 45.455 0.00 0.00 0.00 4.18
352 358 8.665685 CGCCTAAGTGTTTTGAGATTATTTAGT 58.334 33.333 0.00 0.00 0.00 2.24
353 359 7.640240 GCGCCTAAGTGTTTTGAGATTATTTAG 59.360 37.037 0.00 0.00 0.00 1.85
354 360 7.469260 GCGCCTAAGTGTTTTGAGATTATTTA 58.531 34.615 0.00 0.00 0.00 1.40
355 361 6.322491 GCGCCTAAGTGTTTTGAGATTATTT 58.678 36.000 0.00 0.00 0.00 1.40
356 362 5.447279 CGCGCCTAAGTGTTTTGAGATTATT 60.447 40.000 0.00 0.00 0.00 1.40
357 363 4.034048 CGCGCCTAAGTGTTTTGAGATTAT 59.966 41.667 0.00 0.00 0.00 1.28
358 364 3.369756 CGCGCCTAAGTGTTTTGAGATTA 59.630 43.478 0.00 0.00 0.00 1.75
359 365 2.159627 CGCGCCTAAGTGTTTTGAGATT 59.840 45.455 0.00 0.00 0.00 2.40
360 366 1.732259 CGCGCCTAAGTGTTTTGAGAT 59.268 47.619 0.00 0.00 0.00 2.75
361 367 1.144969 CGCGCCTAAGTGTTTTGAGA 58.855 50.000 0.00 0.00 0.00 3.27
362 368 0.165944 CCGCGCCTAAGTGTTTTGAG 59.834 55.000 0.00 0.00 0.00 3.02
363 369 0.533308 ACCGCGCCTAAGTGTTTTGA 60.533 50.000 0.00 0.00 0.00 2.69
364 370 0.385473 CACCGCGCCTAAGTGTTTTG 60.385 55.000 0.00 0.00 0.00 2.44
365 371 1.946267 CACCGCGCCTAAGTGTTTT 59.054 52.632 0.00 0.00 0.00 2.43
366 372 2.613506 GCACCGCGCCTAAGTGTTT 61.614 57.895 12.83 0.00 33.96 2.83
367 373 3.047877 GCACCGCGCCTAAGTGTT 61.048 61.111 12.83 0.00 33.96 3.32
368 374 3.605749 ATGCACCGCGCCTAAGTGT 62.606 57.895 12.83 0.00 41.33 3.55
369 375 1.087202 TAATGCACCGCGCCTAAGTG 61.087 55.000 0.00 4.02 41.33 3.16
370 376 0.391927 TTAATGCACCGCGCCTAAGT 60.392 50.000 0.00 0.00 41.33 2.24
371 377 0.027586 GTTAATGCACCGCGCCTAAG 59.972 55.000 0.00 0.00 41.33 2.18
372 378 0.391927 AGTTAATGCACCGCGCCTAA 60.392 50.000 0.00 0.00 41.33 2.69
373 379 0.391927 AAGTTAATGCACCGCGCCTA 60.392 50.000 0.00 0.00 41.33 3.93
374 380 1.644786 GAAGTTAATGCACCGCGCCT 61.645 55.000 0.00 0.00 41.33 5.52
375 381 1.226295 GAAGTTAATGCACCGCGCC 60.226 57.895 0.00 0.00 41.33 6.53
376 382 1.003851 TAGAAGTTAATGCACCGCGC 58.996 50.000 0.00 0.00 42.89 6.86
377 383 1.326548 GGTAGAAGTTAATGCACCGCG 59.673 52.381 0.00 0.00 0.00 6.46
378 384 2.608090 GAGGTAGAAGTTAATGCACCGC 59.392 50.000 0.00 0.00 0.00 5.68
379 385 2.858344 CGAGGTAGAAGTTAATGCACCG 59.142 50.000 0.00 0.00 0.00 4.94
380 386 3.858247 ACGAGGTAGAAGTTAATGCACC 58.142 45.455 0.00 0.00 0.00 5.01
381 387 5.638234 AGAAACGAGGTAGAAGTTAATGCAC 59.362 40.000 0.00 0.00 0.00 4.57
382 388 5.790593 AGAAACGAGGTAGAAGTTAATGCA 58.209 37.500 0.00 0.00 0.00 3.96
383 389 6.147328 ACAAGAAACGAGGTAGAAGTTAATGC 59.853 38.462 0.00 0.00 0.00 3.56
384 390 7.653767 ACAAGAAACGAGGTAGAAGTTAATG 57.346 36.000 0.00 0.00 0.00 1.90
385 391 8.672823 AAACAAGAAACGAGGTAGAAGTTAAT 57.327 30.769 0.00 0.00 0.00 1.40
386 392 7.983484 AGAAACAAGAAACGAGGTAGAAGTTAA 59.017 33.333 0.00 0.00 0.00 2.01
387 393 7.495055 AGAAACAAGAAACGAGGTAGAAGTTA 58.505 34.615 0.00 0.00 0.00 2.24
388 394 6.346896 AGAAACAAGAAACGAGGTAGAAGTT 58.653 36.000 0.00 0.00 0.00 2.66
389 395 5.915175 AGAAACAAGAAACGAGGTAGAAGT 58.085 37.500 0.00 0.00 0.00 3.01
390 396 6.846325 AAGAAACAAGAAACGAGGTAGAAG 57.154 37.500 0.00 0.00 0.00 2.85
391 397 7.267128 TGTAAGAAACAAGAAACGAGGTAGAA 58.733 34.615 0.00 0.00 34.29 2.10
392 398 6.808829 TGTAAGAAACAAGAAACGAGGTAGA 58.191 36.000 0.00 0.00 34.29 2.59
393 399 7.653767 ATGTAAGAAACAAGAAACGAGGTAG 57.346 36.000 0.00 0.00 42.70 3.18
394 400 9.362539 GATATGTAAGAAACAAGAAACGAGGTA 57.637 33.333 0.00 0.00 42.70 3.08
395 401 7.876068 TGATATGTAAGAAACAAGAAACGAGGT 59.124 33.333 0.00 0.00 42.70 3.85
396 402 8.251750 TGATATGTAAGAAACAAGAAACGAGG 57.748 34.615 0.00 0.00 42.70 4.63
397 403 9.530129 GTTGATATGTAAGAAACAAGAAACGAG 57.470 33.333 0.00 0.00 42.70 4.18
398 404 8.500773 GGTTGATATGTAAGAAACAAGAAACGA 58.499 33.333 0.00 0.00 42.70 3.85
399 405 8.286800 TGGTTGATATGTAAGAAACAAGAAACG 58.713 33.333 0.00 0.00 42.70 3.60
400 406 9.959749 TTGGTTGATATGTAAGAAACAAGAAAC 57.040 29.630 0.00 0.00 42.70 2.78
402 408 9.567776 TCTTGGTTGATATGTAAGAAACAAGAA 57.432 29.630 8.27 0.00 42.70 2.52
403 409 9.567776 TTCTTGGTTGATATGTAAGAAACAAGA 57.432 29.630 6.91 6.91 42.70 3.02
404 410 9.831737 CTTCTTGGTTGATATGTAAGAAACAAG 57.168 33.333 0.00 0.00 42.70 3.16
405 411 9.567776 TCTTCTTGGTTGATATGTAAGAAACAA 57.432 29.630 0.00 0.00 42.70 2.83
406 412 9.567776 TTCTTCTTGGTTGATATGTAAGAAACA 57.432 29.630 0.00 0.00 43.86 2.83
410 416 9.958180 TCATTTCTTCTTGGTTGATATGTAAGA 57.042 29.630 0.00 0.00 0.00 2.10
412 418 9.177608 CCTCATTTCTTCTTGGTTGATATGTAA 57.822 33.333 0.00 0.00 0.00 2.41
413 419 7.775093 CCCTCATTTCTTCTTGGTTGATATGTA 59.225 37.037 0.00 0.00 0.00 2.29
414 420 6.604795 CCCTCATTTCTTCTTGGTTGATATGT 59.395 38.462 0.00 0.00 0.00 2.29
415 421 6.040166 CCCCTCATTTCTTCTTGGTTGATATG 59.960 42.308 0.00 0.00 0.00 1.78
416 422 6.131961 CCCCTCATTTCTTCTTGGTTGATAT 58.868 40.000 0.00 0.00 0.00 1.63
417 423 5.015178 ACCCCTCATTTCTTCTTGGTTGATA 59.985 40.000 0.00 0.00 0.00 2.15
418 424 4.202716 ACCCCTCATTTCTTCTTGGTTGAT 60.203 41.667 0.00 0.00 0.00 2.57
419 425 3.140144 ACCCCTCATTTCTTCTTGGTTGA 59.860 43.478 0.00 0.00 0.00 3.18
420 426 3.256631 CACCCCTCATTTCTTCTTGGTTG 59.743 47.826 0.00 0.00 0.00 3.77
421 427 3.117131 ACACCCCTCATTTCTTCTTGGTT 60.117 43.478 0.00 0.00 0.00 3.67
422 428 2.447047 ACACCCCTCATTTCTTCTTGGT 59.553 45.455 0.00 0.00 0.00 3.67
423 429 2.821969 CACACCCCTCATTTCTTCTTGG 59.178 50.000 0.00 0.00 0.00 3.61
424 430 2.229784 GCACACCCCTCATTTCTTCTTG 59.770 50.000 0.00 0.00 0.00 3.02
425 431 2.158475 TGCACACCCCTCATTTCTTCTT 60.158 45.455 0.00 0.00 0.00 2.52
426 432 1.425066 TGCACACCCCTCATTTCTTCT 59.575 47.619 0.00 0.00 0.00 2.85
427 433 1.909700 TGCACACCCCTCATTTCTTC 58.090 50.000 0.00 0.00 0.00 2.87
428 434 2.173519 CATGCACACCCCTCATTTCTT 58.826 47.619 0.00 0.00 0.00 2.52
429 435 1.843368 CATGCACACCCCTCATTTCT 58.157 50.000 0.00 0.00 0.00 2.52
430 436 0.174162 GCATGCACACCCCTCATTTC 59.826 55.000 14.21 0.00 0.00 2.17
431 437 0.251922 AGCATGCACACCCCTCATTT 60.252 50.000 21.98 0.00 0.00 2.32
432 438 0.251922 AAGCATGCACACCCCTCATT 60.252 50.000 21.98 0.00 0.00 2.57
433 439 0.251922 AAAGCATGCACACCCCTCAT 60.252 50.000 21.98 0.00 0.00 2.90
434 440 0.469705 AAAAGCATGCACACCCCTCA 60.470 50.000 21.98 0.00 0.00 3.86
435 441 1.544724 TAAAAGCATGCACACCCCTC 58.455 50.000 21.98 0.00 0.00 4.30
436 442 2.008242 TTAAAAGCATGCACACCCCT 57.992 45.000 21.98 0.00 0.00 4.79
437 443 2.233431 TCATTAAAAGCATGCACACCCC 59.767 45.455 21.98 0.00 0.00 4.95
438 444 3.056607 AGTCATTAAAAGCATGCACACCC 60.057 43.478 21.98 0.00 0.00 4.61
439 445 4.178545 AGTCATTAAAAGCATGCACACC 57.821 40.909 21.98 0.00 0.00 4.16
440 446 5.221880 TCAAGTCATTAAAAGCATGCACAC 58.778 37.500 21.98 4.04 0.00 3.82
441 447 5.241285 TCTCAAGTCATTAAAAGCATGCACA 59.759 36.000 21.98 0.00 0.00 4.57
442 448 5.702865 TCTCAAGTCATTAAAAGCATGCAC 58.297 37.500 21.98 6.43 0.00 4.57
443 449 5.963176 TCTCAAGTCATTAAAAGCATGCA 57.037 34.783 21.98 0.00 0.00 3.96
444 450 9.178427 GATAATCTCAAGTCATTAAAAGCATGC 57.822 33.333 10.51 10.51 0.00 4.06
452 458 9.430623 TCGTGTTTGATAATCTCAAGTCATTAA 57.569 29.630 0.00 0.00 44.48 1.40
453 459 8.869897 GTCGTGTTTGATAATCTCAAGTCATTA 58.130 33.333 0.00 0.00 44.48 1.90
454 460 7.387673 TGTCGTGTTTGATAATCTCAAGTCATT 59.612 33.333 0.00 0.00 44.48 2.57
455 461 6.873605 TGTCGTGTTTGATAATCTCAAGTCAT 59.126 34.615 0.00 0.00 44.48 3.06
456 462 6.220201 TGTCGTGTTTGATAATCTCAAGTCA 58.780 36.000 0.00 0.00 44.48 3.41
457 463 6.706055 TGTCGTGTTTGATAATCTCAAGTC 57.294 37.500 0.00 0.00 44.48 3.01
458 464 6.402550 GCATGTCGTGTTTGATAATCTCAAGT 60.403 38.462 0.00 0.00 44.48 3.16
459 465 5.961843 GCATGTCGTGTTTGATAATCTCAAG 59.038 40.000 0.00 0.00 44.48 3.02
460 466 5.411053 TGCATGTCGTGTTTGATAATCTCAA 59.589 36.000 0.00 0.00 42.15 3.02
461 467 4.934602 TGCATGTCGTGTTTGATAATCTCA 59.065 37.500 0.00 0.00 0.00 3.27
462 468 5.063944 ACTGCATGTCGTGTTTGATAATCTC 59.936 40.000 0.00 0.00 0.00 2.75
463 469 4.937620 ACTGCATGTCGTGTTTGATAATCT 59.062 37.500 0.00 0.00 0.00 2.40
464 470 5.023920 CACTGCATGTCGTGTTTGATAATC 58.976 41.667 7.95 0.00 0.00 1.75
465 471 4.142622 CCACTGCATGTCGTGTTTGATAAT 60.143 41.667 13.12 0.00 0.00 1.28
466 472 3.188254 CCACTGCATGTCGTGTTTGATAA 59.812 43.478 13.12 0.00 0.00 1.75
467 473 2.741517 CCACTGCATGTCGTGTTTGATA 59.258 45.455 13.12 0.00 0.00 2.15
468 474 1.536766 CCACTGCATGTCGTGTTTGAT 59.463 47.619 13.12 0.00 0.00 2.57
469 475 0.943673 CCACTGCATGTCGTGTTTGA 59.056 50.000 13.12 0.00 0.00 2.69
470 476 0.662619 ACCACTGCATGTCGTGTTTG 59.337 50.000 13.12 3.87 0.00 2.93
471 477 1.388547 AACCACTGCATGTCGTGTTT 58.611 45.000 13.12 5.09 0.00 2.83
472 478 2.143122 CTAACCACTGCATGTCGTGTT 58.857 47.619 13.12 10.39 0.00 3.32
473 479 1.070134 ACTAACCACTGCATGTCGTGT 59.930 47.619 13.12 2.00 0.00 4.49
474 480 1.795768 ACTAACCACTGCATGTCGTG 58.204 50.000 8.87 8.87 0.00 4.35
475 481 2.224185 TGAACTAACCACTGCATGTCGT 60.224 45.455 0.00 0.00 0.00 4.34
476 482 2.412870 TGAACTAACCACTGCATGTCG 58.587 47.619 0.00 0.00 0.00 4.35
477 483 4.726416 CAATGAACTAACCACTGCATGTC 58.274 43.478 0.00 0.00 0.00 3.06
478 484 3.057315 GCAATGAACTAACCACTGCATGT 60.057 43.478 0.00 0.00 0.00 3.21
479 485 3.057386 TGCAATGAACTAACCACTGCATG 60.057 43.478 0.00 0.00 33.65 4.06
480 486 3.156293 TGCAATGAACTAACCACTGCAT 58.844 40.909 0.00 0.00 33.65 3.96
481 487 2.580962 TGCAATGAACTAACCACTGCA 58.419 42.857 0.00 0.00 36.06 4.41
482 488 3.855689 ATGCAATGAACTAACCACTGC 57.144 42.857 0.00 0.00 0.00 4.40
494 500 9.844790 GCTAATTAATAGTATTGCATGCAATGA 57.155 29.630 42.30 30.79 39.28 2.57
495 501 9.628746 TGCTAATTAATAGTATTGCATGCAATG 57.371 29.630 42.30 27.00 39.65 2.82
497 503 9.462174 GTTGCTAATTAATAGTATTGCATGCAA 57.538 29.630 33.57 33.57 35.81 4.08
498 504 8.849168 AGTTGCTAATTAATAGTATTGCATGCA 58.151 29.630 18.46 18.46 33.87 3.96
517 523 9.502091 ACAAGAGACATTAATGTTTAGTTGCTA 57.498 29.630 21.63 0.00 41.95 3.49
518 524 8.396272 ACAAGAGACATTAATGTTTAGTTGCT 57.604 30.769 21.63 12.19 41.95 3.91
519 525 9.463443 AAACAAGAGACATTAATGTTTAGTTGC 57.537 29.630 21.63 7.69 41.09 4.17
525 531 9.136323 AGGAGAAAACAAGAGACATTAATGTTT 57.864 29.630 21.63 16.47 43.78 2.83
526 532 8.697507 AGGAGAAAACAAGAGACATTAATGTT 57.302 30.769 21.63 11.84 41.95 2.71
527 533 8.697507 AAGGAGAAAACAAGAGACATTAATGT 57.302 30.769 20.93 20.93 45.16 2.71
528 534 9.007901 AGAAGGAGAAAACAAGAGACATTAATG 57.992 33.333 14.01 14.01 0.00 1.90
529 535 9.225436 GAGAAGGAGAAAACAAGAGACATTAAT 57.775 33.333 0.00 0.00 0.00 1.40
530 536 7.661847 GGAGAAGGAGAAAACAAGAGACATTAA 59.338 37.037 0.00 0.00 0.00 1.40
531 537 7.016661 AGGAGAAGGAGAAAACAAGAGACATTA 59.983 37.037 0.00 0.00 0.00 1.90
532 538 6.000840 GGAGAAGGAGAAAACAAGAGACATT 58.999 40.000 0.00 0.00 0.00 2.71
533 539 5.309282 AGGAGAAGGAGAAAACAAGAGACAT 59.691 40.000 0.00 0.00 0.00 3.06
534 540 4.656112 AGGAGAAGGAGAAAACAAGAGACA 59.344 41.667 0.00 0.00 0.00 3.41
535 541 5.222079 AGGAGAAGGAGAAAACAAGAGAC 57.778 43.478 0.00 0.00 0.00 3.36
536 542 5.455326 CCAAGGAGAAGGAGAAAACAAGAGA 60.455 44.000 0.00 0.00 0.00 3.10
537 543 4.759183 CCAAGGAGAAGGAGAAAACAAGAG 59.241 45.833 0.00 0.00 0.00 2.85
538 544 4.166144 ACCAAGGAGAAGGAGAAAACAAGA 59.834 41.667 0.00 0.00 0.00 3.02
539 545 4.464947 ACCAAGGAGAAGGAGAAAACAAG 58.535 43.478 0.00 0.00 0.00 3.16
540 546 4.080015 TGACCAAGGAGAAGGAGAAAACAA 60.080 41.667 0.00 0.00 0.00 2.83
541 547 3.458118 TGACCAAGGAGAAGGAGAAAACA 59.542 43.478 0.00 0.00 0.00 2.83
542 548 3.815962 GTGACCAAGGAGAAGGAGAAAAC 59.184 47.826 0.00 0.00 0.00 2.43
543 549 3.181443 GGTGACCAAGGAGAAGGAGAAAA 60.181 47.826 0.00 0.00 0.00 2.29
544 550 2.372172 GGTGACCAAGGAGAAGGAGAAA 59.628 50.000 0.00 0.00 0.00 2.52
545 551 1.978580 GGTGACCAAGGAGAAGGAGAA 59.021 52.381 0.00 0.00 0.00 2.87
546 552 1.645710 GGTGACCAAGGAGAAGGAGA 58.354 55.000 0.00 0.00 0.00 3.71
547 553 0.247736 CGGTGACCAAGGAGAAGGAG 59.752 60.000 1.11 0.00 0.00 3.69
548 554 0.471211 ACGGTGACCAAGGAGAAGGA 60.471 55.000 1.11 0.00 0.00 3.36
549 555 0.320771 CACGGTGACCAAGGAGAAGG 60.321 60.000 0.74 0.00 0.00 3.46
550 556 0.393077 ACACGGTGACCAAGGAGAAG 59.607 55.000 16.29 0.00 0.00 2.85
551 557 0.391597 GACACGGTGACCAAGGAGAA 59.608 55.000 16.29 0.00 0.00 2.87
552 558 1.469335 GGACACGGTGACCAAGGAGA 61.469 60.000 21.88 0.00 32.46 3.71
553 559 1.004918 GGACACGGTGACCAAGGAG 60.005 63.158 21.88 0.00 32.46 3.69
554 560 1.338890 TTGGACACGGTGACCAAGGA 61.339 55.000 31.46 16.89 44.71 3.36
555 561 1.147376 TTGGACACGGTGACCAAGG 59.853 57.895 31.46 0.00 44.71 3.61
556 562 4.868026 TTGGACACGGTGACCAAG 57.132 55.556 31.46 0.39 44.71 3.61
557 563 1.525077 GCTTGGACACGGTGACCAA 60.525 57.895 32.26 32.26 46.69 3.67
558 564 1.116536 TAGCTTGGACACGGTGACCA 61.117 55.000 24.80 24.80 40.24 4.02
559 565 0.034337 TTAGCTTGGACACGGTGACC 59.966 55.000 20.40 20.40 32.81 4.02
560 566 2.094762 ATTAGCTTGGACACGGTGAC 57.905 50.000 16.29 8.76 0.00 3.67
561 567 3.449377 TCATATTAGCTTGGACACGGTGA 59.551 43.478 16.29 0.00 0.00 4.02
562 568 3.555956 GTCATATTAGCTTGGACACGGTG 59.444 47.826 6.58 6.58 0.00 4.94
563 569 3.451178 AGTCATATTAGCTTGGACACGGT 59.549 43.478 0.00 0.00 0.00 4.83
564 570 4.060038 AGTCATATTAGCTTGGACACGG 57.940 45.455 0.00 0.00 0.00 4.94
565 571 6.273825 AGTAAGTCATATTAGCTTGGACACG 58.726 40.000 0.00 0.00 0.00 4.49
566 572 7.222999 GTGAGTAAGTCATATTAGCTTGGACAC 59.777 40.741 0.00 0.00 37.56 3.67
567 573 7.265673 GTGAGTAAGTCATATTAGCTTGGACA 58.734 38.462 0.00 0.00 37.56 4.02
568 574 6.702282 GGTGAGTAAGTCATATTAGCTTGGAC 59.298 42.308 0.00 0.00 37.56 4.02
569 575 6.611642 AGGTGAGTAAGTCATATTAGCTTGGA 59.388 38.462 0.00 0.00 37.56 3.53
570 576 6.821388 AGGTGAGTAAGTCATATTAGCTTGG 58.179 40.000 0.00 0.00 37.56 3.61
571 577 8.851145 TCTAGGTGAGTAAGTCATATTAGCTTG 58.149 37.037 0.00 0.00 37.56 4.01
572 578 8.852135 GTCTAGGTGAGTAAGTCATATTAGCTT 58.148 37.037 0.00 0.00 37.56 3.74
573 579 7.173562 CGTCTAGGTGAGTAAGTCATATTAGCT 59.826 40.741 0.00 0.00 37.56 3.32
574 580 7.299586 CGTCTAGGTGAGTAAGTCATATTAGC 58.700 42.308 0.00 0.00 37.56 3.09
575 581 7.660617 TCCGTCTAGGTGAGTAAGTCATATTAG 59.339 40.741 0.00 0.00 41.99 1.73
576 582 7.512130 TCCGTCTAGGTGAGTAAGTCATATTA 58.488 38.462 0.00 0.00 41.99 0.98
577 583 6.363065 TCCGTCTAGGTGAGTAAGTCATATT 58.637 40.000 0.00 0.00 41.99 1.28
578 584 5.938279 TCCGTCTAGGTGAGTAAGTCATAT 58.062 41.667 0.00 0.00 41.99 1.78
579 585 5.363562 TCCGTCTAGGTGAGTAAGTCATA 57.636 43.478 0.00 0.00 41.99 2.15
580 586 4.200874 CTCCGTCTAGGTGAGTAAGTCAT 58.799 47.826 0.00 0.00 41.99 3.06
581 587 3.607741 CTCCGTCTAGGTGAGTAAGTCA 58.392 50.000 0.00 0.00 41.99 3.41
582 588 2.944349 CCTCCGTCTAGGTGAGTAAGTC 59.056 54.545 0.00 0.00 41.99 3.01
583 589 2.575279 TCCTCCGTCTAGGTGAGTAAGT 59.425 50.000 0.00 0.00 41.99 2.24
584 590 3.278668 TCCTCCGTCTAGGTGAGTAAG 57.721 52.381 0.00 0.00 41.99 2.34
585 591 3.009916 ACTTCCTCCGTCTAGGTGAGTAA 59.990 47.826 0.00 0.00 41.99 2.24
586 592 2.575279 ACTTCCTCCGTCTAGGTGAGTA 59.425 50.000 0.00 0.00 41.99 2.59
587 593 1.355043 ACTTCCTCCGTCTAGGTGAGT 59.645 52.381 0.00 0.00 41.99 3.41
588 594 2.131776 ACTTCCTCCGTCTAGGTGAG 57.868 55.000 0.00 0.00 41.99 3.51
589 595 3.726557 TTACTTCCTCCGTCTAGGTGA 57.273 47.619 0.00 0.00 41.99 4.02
590 596 4.796038 TTTTACTTCCTCCGTCTAGGTG 57.204 45.455 0.00 0.00 41.99 4.00
591 597 4.222366 CCTTTTTACTTCCTCCGTCTAGGT 59.778 45.833 0.00 0.00 41.99 3.08
592 598 4.465305 TCCTTTTTACTTCCTCCGTCTAGG 59.535 45.833 0.00 0.00 42.97 3.02
593 599 5.656213 TCCTTTTTACTTCCTCCGTCTAG 57.344 43.478 0.00 0.00 0.00 2.43
594 600 5.541484 ACTTCCTTTTTACTTCCTCCGTCTA 59.459 40.000 0.00 0.00 0.00 2.59
595 601 4.347292 ACTTCCTTTTTACTTCCTCCGTCT 59.653 41.667 0.00 0.00 0.00 4.18
596 602 4.639334 ACTTCCTTTTTACTTCCTCCGTC 58.361 43.478 0.00 0.00 0.00 4.79
597 603 4.102054 TGACTTCCTTTTTACTTCCTCCGT 59.898 41.667 0.00 0.00 0.00 4.69
598 604 4.638304 TGACTTCCTTTTTACTTCCTCCG 58.362 43.478 0.00 0.00 0.00 4.63
599 605 5.416013 CCATGACTTCCTTTTTACTTCCTCC 59.584 44.000 0.00 0.00 0.00 4.30
600 606 6.004574 ACCATGACTTCCTTTTTACTTCCTC 58.995 40.000 0.00 0.00 0.00 3.71
601 607 5.953571 ACCATGACTTCCTTTTTACTTCCT 58.046 37.500 0.00 0.00 0.00 3.36
602 608 6.650427 AACCATGACTTCCTTTTTACTTCC 57.350 37.500 0.00 0.00 0.00 3.46
678 687 9.277783 GGCATCTTCAATAGATTGTATGTTAGT 57.722 33.333 2.32 0.00 41.78 2.24
680 689 8.439971 AGGGCATCTTCAATAGATTGTATGTTA 58.560 33.333 2.32 0.00 41.78 2.41
681 690 7.293073 AGGGCATCTTCAATAGATTGTATGTT 58.707 34.615 2.32 0.00 41.78 2.71
682 691 6.845908 AGGGCATCTTCAATAGATTGTATGT 58.154 36.000 2.32 0.00 41.78 2.29
683 692 8.853077 TTAGGGCATCTTCAATAGATTGTATG 57.147 34.615 2.32 6.44 41.78 2.39
686 695 9.866655 TTTATTAGGGCATCTTCAATAGATTGT 57.133 29.630 2.32 0.00 41.78 2.71
690 699 9.561069 GTTCTTTATTAGGGCATCTTCAATAGA 57.439 33.333 0.00 0.00 37.28 1.98
691 700 9.566432 AGTTCTTTATTAGGGCATCTTCAATAG 57.434 33.333 0.00 0.00 0.00 1.73
692 701 9.561069 GAGTTCTTTATTAGGGCATCTTCAATA 57.439 33.333 0.00 0.00 0.00 1.90
693 702 8.055181 TGAGTTCTTTATTAGGGCATCTTCAAT 58.945 33.333 0.00 0.00 0.00 2.57
694 703 7.336931 GTGAGTTCTTTATTAGGGCATCTTCAA 59.663 37.037 0.00 0.00 0.00 2.69
695 704 6.823689 GTGAGTTCTTTATTAGGGCATCTTCA 59.176 38.462 0.00 0.00 0.00 3.02
696 705 6.261158 GGTGAGTTCTTTATTAGGGCATCTTC 59.739 42.308 0.00 0.00 0.00 2.87
697 706 6.122964 GGTGAGTTCTTTATTAGGGCATCTT 58.877 40.000 0.00 0.00 0.00 2.40
698 707 5.685075 CGGTGAGTTCTTTATTAGGGCATCT 60.685 44.000 0.00 0.00 0.00 2.90
699 708 4.511826 CGGTGAGTTCTTTATTAGGGCATC 59.488 45.833 0.00 0.00 0.00 3.91
700 709 4.451900 CGGTGAGTTCTTTATTAGGGCAT 58.548 43.478 0.00 0.00 0.00 4.40
701 710 3.869065 CGGTGAGTTCTTTATTAGGGCA 58.131 45.455 0.00 0.00 0.00 5.36
702 711 2.612672 GCGGTGAGTTCTTTATTAGGGC 59.387 50.000 0.00 0.00 0.00 5.19
703 712 2.864343 CGCGGTGAGTTCTTTATTAGGG 59.136 50.000 0.00 0.00 0.00 3.53
704 713 2.864343 CCGCGGTGAGTTCTTTATTAGG 59.136 50.000 19.50 0.00 0.00 2.69
705 714 3.518590 ACCGCGGTGAGTTCTTTATTAG 58.481 45.455 33.75 0.00 0.00 1.73
706 715 3.598019 ACCGCGGTGAGTTCTTTATTA 57.402 42.857 33.75 0.00 0.00 0.98
707 716 2.467566 ACCGCGGTGAGTTCTTTATT 57.532 45.000 33.75 0.00 0.00 1.40
751 760 4.200283 GCGGTGGAGCTCGAGGAG 62.200 72.222 15.58 0.00 0.00 3.69
770 779 2.877691 GGATGTTCCTGCCGCAAC 59.122 61.111 0.00 0.00 32.53 4.17
771 780 2.745884 CGGATGTTCCTGCCGCAA 60.746 61.111 0.00 0.00 38.46 4.85
805 814 3.331591 TGAGGTTTAAGGTTAGGGGGAAC 59.668 47.826 0.00 0.00 0.00 3.62
812 821 9.280174 TGAAGTAATTGTGAGGTTTAAGGTTAG 57.720 33.333 0.00 0.00 0.00 2.34
825 834 6.758254 TGACTGATGAGTGAAGTAATTGTGA 58.242 36.000 0.00 0.00 30.16 3.58
880 889 0.035915 GTGGAGTGGAGAAGAAGGGC 60.036 60.000 0.00 0.00 0.00 5.19
883 893 1.002544 GGTGGTGGAGTGGAGAAGAAG 59.997 57.143 0.00 0.00 0.00 2.85
894 909 1.076727 GGGGAAAAGGGTGGTGGAG 59.923 63.158 0.00 0.00 0.00 3.86
895 910 1.388217 AGGGGAAAAGGGTGGTGGA 60.388 57.895 0.00 0.00 0.00 4.02
901 916 2.167729 GGGGTGAGGGGAAAAGGGT 61.168 63.158 0.00 0.00 0.00 4.34
995 1019 0.175760 GAGAAGCGTGCCCATGTAGA 59.824 55.000 0.00 0.00 0.00 2.59
996 1020 0.811616 GGAGAAGCGTGCCCATGTAG 60.812 60.000 0.00 0.00 0.00 2.74
997 1021 1.220749 GGAGAAGCGTGCCCATGTA 59.779 57.895 0.00 0.00 0.00 2.29
2006 2033 2.202623 CAGTAGCACGCTCCGGTC 60.203 66.667 0.00 0.00 0.00 4.79
2008 2035 2.771639 TAGCAGTAGCACGCTCCGG 61.772 63.158 0.00 0.00 45.49 5.14
2009 2036 1.586564 GTAGCAGTAGCACGCTCCG 60.587 63.158 0.00 0.00 45.49 4.63
2010 2037 1.586564 CGTAGCAGTAGCACGCTCC 60.587 63.158 0.00 0.00 45.49 4.70
2011 2038 1.586564 CCGTAGCAGTAGCACGCTC 60.587 63.158 0.00 0.00 45.49 5.03
2012 2039 2.490217 CCGTAGCAGTAGCACGCT 59.510 61.111 0.00 0.00 45.49 5.07
2016 2043 2.577059 GCACCCGTAGCAGTAGCA 59.423 61.111 0.00 0.00 45.49 3.49
2017 2044 2.202892 GGCACCCGTAGCAGTAGC 60.203 66.667 0.00 0.00 42.56 3.58
2045 2086 3.068560 CGTCCAATTTTCACCGGACTAA 58.931 45.455 9.46 0.00 44.76 2.24
2064 2105 6.996282 CCAAAATCCAATCCTAATAGTACCGT 59.004 38.462 0.00 0.00 0.00 4.83
2067 2108 8.621286 CACACCAAAATCCAATCCTAATAGTAC 58.379 37.037 0.00 0.00 0.00 2.73
2068 2109 8.333235 ACACACCAAAATCCAATCCTAATAGTA 58.667 33.333 0.00 0.00 0.00 1.82
2069 2110 7.122650 CACACACCAAAATCCAATCCTAATAGT 59.877 37.037 0.00 0.00 0.00 2.12
2070 2111 7.122650 ACACACACCAAAATCCAATCCTAATAG 59.877 37.037 0.00 0.00 0.00 1.73
2102 2143 9.820725 AATTCACAACTTCATTCAGAAAATCAA 57.179 25.926 0.00 0.00 35.40 2.57
2119 2162 1.753956 AAAGCGTCGCAATTCACAAC 58.246 45.000 21.09 0.00 0.00 3.32
2121 2164 1.658931 CGAAAAGCGTCGCAATTCACA 60.659 47.619 25.00 0.00 33.66 3.58
2130 2173 2.173382 CAAGGCCGAAAAGCGTCG 59.827 61.111 0.00 1.11 40.77 5.12
2131 2174 1.082104 CACAAGGCCGAAAAGCGTC 60.082 57.895 0.00 0.00 38.67 5.19
2132 2175 1.098712 TTCACAAGGCCGAAAAGCGT 61.099 50.000 0.00 0.00 38.67 5.07
2133 2176 0.660300 GTTCACAAGGCCGAAAAGCG 60.660 55.000 0.00 0.00 40.47 4.68
2134 2177 0.668535 AGTTCACAAGGCCGAAAAGC 59.331 50.000 0.00 0.00 0.00 3.51
2135 2178 1.676006 ACAGTTCACAAGGCCGAAAAG 59.324 47.619 0.00 0.00 0.00 2.27
2136 2179 1.403679 CACAGTTCACAAGGCCGAAAA 59.596 47.619 0.00 0.00 0.00 2.29
2137 2180 1.021202 CACAGTTCACAAGGCCGAAA 58.979 50.000 0.00 0.00 0.00 3.46
2138 2181 1.444119 GCACAGTTCACAAGGCCGAA 61.444 55.000 0.00 0.00 0.00 4.30
2139 2182 1.891919 GCACAGTTCACAAGGCCGA 60.892 57.895 0.00 0.00 0.00 5.54
2140 2183 2.639286 GCACAGTTCACAAGGCCG 59.361 61.111 0.00 0.00 0.00 6.13
2141 2184 1.237285 ATCGCACAGTTCACAAGGCC 61.237 55.000 0.00 0.00 0.00 5.19
2142 2185 0.110056 CATCGCACAGTTCACAAGGC 60.110 55.000 0.00 0.00 0.00 4.35
2143 2186 0.110056 GCATCGCACAGTTCACAAGG 60.110 55.000 0.00 0.00 0.00 3.61
2144 2187 0.870393 AGCATCGCACAGTTCACAAG 59.130 50.000 0.00 0.00 0.00 3.16
2145 2188 1.308047 AAGCATCGCACAGTTCACAA 58.692 45.000 0.00 0.00 0.00 3.33
2146 2189 1.308047 AAAGCATCGCACAGTTCACA 58.692 45.000 0.00 0.00 0.00 3.58
2147 2190 2.310577 GAAAAGCATCGCACAGTTCAC 58.689 47.619 0.00 0.00 0.00 3.18
2148 2191 1.069973 CGAAAAGCATCGCACAGTTCA 60.070 47.619 0.00 0.00 35.85 3.18
2149 2192 1.595609 CGAAAAGCATCGCACAGTTC 58.404 50.000 0.00 0.00 35.85 3.01
2150 2193 0.238289 CCGAAAAGCATCGCACAGTT 59.762 50.000 1.55 0.00 41.40 3.16
2151 2194 0.884704 ACCGAAAAGCATCGCACAGT 60.885 50.000 1.55 0.00 41.40 3.55
2152 2195 0.179215 GACCGAAAAGCATCGCACAG 60.179 55.000 1.55 0.00 41.40 3.66
2153 2196 0.602638 AGACCGAAAAGCATCGCACA 60.603 50.000 1.55 0.00 41.40 4.57
2154 2197 0.095417 GAGACCGAAAAGCATCGCAC 59.905 55.000 1.55 0.00 41.40 5.34
2155 2198 1.351430 CGAGACCGAAAAGCATCGCA 61.351 55.000 1.55 0.00 41.40 5.10
2156 2199 1.345176 CGAGACCGAAAAGCATCGC 59.655 57.895 1.55 0.00 41.40 4.58
2157 2200 0.366871 CACGAGACCGAAAAGCATCG 59.633 55.000 0.00 0.22 42.37 3.84
2173 2216 3.218398 GTCACTCGCTTTTCAATTCACG 58.782 45.455 0.00 0.00 0.00 4.35
2246 2289 4.664891 GCAACGATAACGACTTGTGTAACC 60.665 45.833 0.00 0.00 42.66 2.85
2267 2310 1.375908 GCGATGAACCAGTCCAGCA 60.376 57.895 0.00 0.00 0.00 4.41
2284 2328 1.981254 AAGTAACAATGCATGCACGC 58.019 45.000 25.37 9.49 0.00 5.34
2313 2358 4.023792 CGCGGAATGTATGTAGTGGTAGTA 60.024 45.833 0.00 0.00 0.00 1.82
2314 2359 3.243301 CGCGGAATGTATGTAGTGGTAGT 60.243 47.826 0.00 0.00 0.00 2.73
2315 2360 3.243301 ACGCGGAATGTATGTAGTGGTAG 60.243 47.826 12.47 0.00 0.00 3.18
2316 2361 2.689471 ACGCGGAATGTATGTAGTGGTA 59.311 45.455 12.47 0.00 0.00 3.25
2317 2362 1.479323 ACGCGGAATGTATGTAGTGGT 59.521 47.619 12.47 0.00 0.00 4.16
2318 2363 2.218953 ACGCGGAATGTATGTAGTGG 57.781 50.000 12.47 0.00 0.00 4.00
2319 2364 3.961182 ACTACGCGGAATGTATGTAGTG 58.039 45.455 12.47 0.00 42.87 2.74
2320 2365 3.628942 TGACTACGCGGAATGTATGTAGT 59.371 43.478 12.47 5.42 46.04 2.73
2321 2366 3.973135 GTGACTACGCGGAATGTATGTAG 59.027 47.826 12.47 1.70 38.71 2.74
2322 2367 3.243168 GGTGACTACGCGGAATGTATGTA 60.243 47.826 12.47 0.00 0.00 2.29
2323 2368 2.480759 GGTGACTACGCGGAATGTATGT 60.481 50.000 12.47 0.00 0.00 2.29
2382 2427 0.172803 CTCCCGTTAGCTGCGTAACT 59.827 55.000 15.13 0.00 31.71 2.24
2386 2436 2.678934 TCCTCCCGTTAGCTGCGT 60.679 61.111 0.00 0.00 0.00 5.24
2387 2437 2.202756 GTCCTCCCGTTAGCTGCG 60.203 66.667 0.00 0.19 0.00 5.18
2388 2438 2.202756 CGTCCTCCCGTTAGCTGC 60.203 66.667 0.00 0.00 0.00 5.25
2389 2439 2.494918 CCGTCCTCCCGTTAGCTG 59.505 66.667 0.00 0.00 0.00 4.24
2390 2440 2.758737 CCCGTCCTCCCGTTAGCT 60.759 66.667 0.00 0.00 0.00 3.32
2391 2441 3.846430 CCCCGTCCTCCCGTTAGC 61.846 72.222 0.00 0.00 0.00 3.09
2392 2442 3.846430 GCCCCGTCCTCCCGTTAG 61.846 72.222 0.00 0.00 0.00 2.34
2429 2479 4.269523 TTCGCAGCAACCCCAGCT 62.270 61.111 0.00 0.00 44.62 4.24
2430 2480 3.741476 CTTCGCAGCAACCCCAGC 61.741 66.667 0.00 0.00 0.00 4.85
2431 2481 1.455383 AAACTTCGCAGCAACCCCAG 61.455 55.000 0.00 0.00 0.00 4.45
2432 2482 1.452145 GAAACTTCGCAGCAACCCCA 61.452 55.000 0.00 0.00 0.00 4.96
2433 2483 1.172812 AGAAACTTCGCAGCAACCCC 61.173 55.000 0.00 0.00 0.00 4.95
2434 2484 0.668535 AAGAAACTTCGCAGCAACCC 59.331 50.000 0.00 0.00 0.00 4.11
2435 2485 1.604278 AGAAGAAACTTCGCAGCAACC 59.396 47.619 0.00 0.00 0.00 3.77
2436 2486 4.670227 ATAGAAGAAACTTCGCAGCAAC 57.330 40.909 0.00 0.00 0.00 4.17
2437 2487 6.795098 TTTATAGAAGAAACTTCGCAGCAA 57.205 33.333 0.00 0.00 0.00 3.91
2438 2488 6.620733 GCTTTTATAGAAGAAACTTCGCAGCA 60.621 38.462 7.19 0.00 0.00 4.41
2439 2489 5.734963 GCTTTTATAGAAGAAACTTCGCAGC 59.265 40.000 7.19 0.00 0.00 5.25
2440 2490 6.251549 GGCTTTTATAGAAGAAACTTCGCAG 58.748 40.000 7.19 0.00 0.00 5.18
2441 2491 5.123344 GGGCTTTTATAGAAGAAACTTCGCA 59.877 40.000 7.19 0.00 0.00 5.10
2442 2492 5.354513 AGGGCTTTTATAGAAGAAACTTCGC 59.645 40.000 7.19 0.00 0.00 4.70
2443 2493 6.986904 AGGGCTTTTATAGAAGAAACTTCG 57.013 37.500 7.19 0.00 0.00 3.79
2444 2494 7.363007 CCCAAGGGCTTTTATAGAAGAAACTTC 60.363 40.741 7.19 0.00 0.00 3.01
2445 2495 6.437477 CCCAAGGGCTTTTATAGAAGAAACTT 59.563 38.462 7.19 4.81 0.00 2.66
2446 2496 5.952347 CCCAAGGGCTTTTATAGAAGAAACT 59.048 40.000 7.19 0.00 0.00 2.66
2447 2497 5.715279 ACCCAAGGGCTTTTATAGAAGAAAC 59.285 40.000 4.70 0.00 39.32 2.78
2448 2498 5.899278 ACCCAAGGGCTTTTATAGAAGAAA 58.101 37.500 4.70 0.00 39.32 2.52
2449 2499 5.530176 ACCCAAGGGCTTTTATAGAAGAA 57.470 39.130 4.70 0.00 39.32 2.52
2450 2500 5.261216 CAACCCAAGGGCTTTTATAGAAGA 58.739 41.667 4.70 0.00 39.32 2.87
2451 2501 4.402474 CCAACCCAAGGGCTTTTATAGAAG 59.598 45.833 4.70 0.00 39.32 2.85
2452 2502 4.202738 ACCAACCCAAGGGCTTTTATAGAA 60.203 41.667 4.70 0.00 39.32 2.10
2453 2503 3.335484 ACCAACCCAAGGGCTTTTATAGA 59.665 43.478 4.70 0.00 39.32 1.98
2454 2504 3.699538 GACCAACCCAAGGGCTTTTATAG 59.300 47.826 4.70 0.00 39.32 1.31
2455 2505 3.335484 AGACCAACCCAAGGGCTTTTATA 59.665 43.478 4.70 0.00 43.83 0.98
2456 2506 2.111792 AGACCAACCCAAGGGCTTTTAT 59.888 45.455 4.70 0.00 43.83 1.40
2457 2507 1.501604 AGACCAACCCAAGGGCTTTTA 59.498 47.619 4.70 0.00 43.83 1.52
2458 2508 0.264657 AGACCAACCCAAGGGCTTTT 59.735 50.000 4.70 0.00 43.83 2.27
2459 2509 1.938327 AGACCAACCCAAGGGCTTT 59.062 52.632 4.70 0.00 43.83 3.51
2460 2510 1.938327 AAGACCAACCCAAGGGCTT 59.062 52.632 4.70 0.00 46.21 4.35
2462 2512 2.231716 AATAAGACCAACCCAAGGGC 57.768 50.000 4.70 0.00 39.32 5.19
2463 2513 3.258123 CACAAATAAGACCAACCCAAGGG 59.742 47.826 2.91 2.91 42.03 3.95
2464 2514 4.022329 GTCACAAATAAGACCAACCCAAGG 60.022 45.833 0.00 0.00 0.00 3.61
2465 2515 4.320202 CGTCACAAATAAGACCAACCCAAG 60.320 45.833 0.00 0.00 0.00 3.61
2466 2516 3.566322 CGTCACAAATAAGACCAACCCAA 59.434 43.478 0.00 0.00 0.00 4.12
2467 2517 3.142951 CGTCACAAATAAGACCAACCCA 58.857 45.455 0.00 0.00 0.00 4.51
2468 2518 2.095415 GCGTCACAAATAAGACCAACCC 60.095 50.000 0.00 0.00 0.00 4.11
2469 2519 2.550606 TGCGTCACAAATAAGACCAACC 59.449 45.455 0.00 0.00 0.00 3.77
2470 2520 3.810373 CTGCGTCACAAATAAGACCAAC 58.190 45.455 0.00 0.00 0.00 3.77
2471 2521 2.225491 GCTGCGTCACAAATAAGACCAA 59.775 45.455 0.00 0.00 0.00 3.67
2472 2522 1.804151 GCTGCGTCACAAATAAGACCA 59.196 47.619 0.00 0.00 0.00 4.02
2473 2523 2.076863 AGCTGCGTCACAAATAAGACC 58.923 47.619 0.00 0.00 0.00 3.85
2474 2524 4.638963 GTTAGCTGCGTCACAAATAAGAC 58.361 43.478 0.00 0.00 0.00 3.01
2475 2525 3.366724 CGTTAGCTGCGTCACAAATAAGA 59.633 43.478 0.00 0.00 0.00 2.10
2476 2526 3.483574 CCGTTAGCTGCGTCACAAATAAG 60.484 47.826 0.00 0.00 0.00 1.73
2477 2527 2.413796 CCGTTAGCTGCGTCACAAATAA 59.586 45.455 0.00 0.00 0.00 1.40
2478 2528 1.996898 CCGTTAGCTGCGTCACAAATA 59.003 47.619 0.00 0.00 0.00 1.40
2479 2529 0.796312 CCGTTAGCTGCGTCACAAAT 59.204 50.000 0.00 0.00 0.00 2.32
2480 2530 1.837538 GCCGTTAGCTGCGTCACAAA 61.838 55.000 0.00 0.00 38.99 2.83
2481 2531 2.314647 GCCGTTAGCTGCGTCACAA 61.315 57.895 0.00 0.00 38.99 3.33
2482 2532 2.736995 GCCGTTAGCTGCGTCACA 60.737 61.111 0.00 0.00 38.99 3.58
2483 2533 3.838795 CGCCGTTAGCTGCGTCAC 61.839 66.667 7.20 0.00 42.11 3.67
2508 2558 0.034337 TGACTACCCTTCGTTGTGCC 59.966 55.000 0.00 0.00 30.06 5.01
2517 2567 2.968206 GGTCGCGTGACTACCCTT 59.032 61.111 26.79 0.00 44.83 3.95
2520 2570 2.126189 GTGGGTCGCGTGACTACC 60.126 66.667 26.79 20.59 44.83 3.18
2543 2593 0.969149 ATCTGCTCGTGTCACCTTCA 59.031 50.000 0.00 0.00 0.00 3.02
2578 2628 2.203422 CCAACGCCCAAGTCCCAA 60.203 61.111 0.00 0.00 0.00 4.12
2678 4303 1.056869 CACCATTAAAACGCAACCGC 58.943 50.000 0.00 0.00 38.22 5.68
2722 4347 3.411517 CCCAGATGCCTCCCCGTT 61.412 66.667 0.00 0.00 0.00 4.44
2763 4389 2.489329 ACAATGAAAGGCACTGAATCGG 59.511 45.455 0.00 0.00 40.86 4.18
2778 4404 4.650734 TGCTATCCAAACTGTCACAATGA 58.349 39.130 0.00 0.00 0.00 2.57
2807 4442 2.607499 TGGACATGATTGTTTGGCCTT 58.393 42.857 3.32 0.00 41.95 4.35
2818 4453 0.186873 GCCCTGGGAATGGACATGAT 59.813 55.000 19.27 0.00 0.00 2.45
2822 4457 1.517538 ATTGGCCCTGGGAATGGACA 61.518 55.000 19.27 1.69 38.09 4.02
2830 4465 1.823899 GCGAACTATTGGCCCTGGG 60.824 63.158 8.86 8.86 0.00 4.45
2858 4493 7.064609 CGCCAGTTCTTTCTTCTGTTATCATTA 59.935 37.037 0.00 0.00 0.00 1.90
2966 4601 2.609459 GGATAGACCAGCGTTCAACATG 59.391 50.000 0.00 0.00 38.79 3.21
2972 4607 4.142227 TGTTAGAAGGATAGACCAGCGTTC 60.142 45.833 0.00 0.00 42.04 3.95
2980 4615 3.243468 GGCCGTCTGTTAGAAGGATAGAC 60.243 52.174 13.77 0.00 45.13 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.