Multiple sequence alignment - TraesCS2B01G346700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G346700 chr2B 100.000 6370 0 0 1 6370 493559361 493565730 0.000000e+00 11764.0
1 TraesCS2B01G346700 chr2B 84.906 212 32 0 3341 3552 493562671 493562882 1.390000e-51 215.0
2 TraesCS2B01G346700 chr2B 84.906 212 32 0 3311 3522 493562701 493562912 1.390000e-51 215.0
3 TraesCS2B01G346700 chr2A 93.884 3450 128 29 1850 5228 566852252 566855689 0.000000e+00 5125.0
4 TraesCS2B01G346700 chr2A 92.565 1345 59 19 535 1850 566850763 566852095 0.000000e+00 1892.0
5 TraesCS2B01G346700 chr2A 89.157 1079 79 18 5227 6283 566855729 566856791 0.000000e+00 1310.0
6 TraesCS2B01G346700 chr2A 82.436 353 39 6 1851 2203 32807814 32807485 2.910000e-73 287.0
7 TraesCS2B01G346700 chr2A 87.264 212 27 0 3341 3552 566853718 566853929 6.380000e-60 243.0
8 TraesCS2B01G346700 chr2A 85.849 212 30 0 3311 3522 566853748 566853959 6.430000e-55 226.0
9 TraesCS2B01G346700 chr2A 87.006 177 23 0 3376 3552 566853723 566853899 3.890000e-47 200.0
10 TraesCS2B01G346700 chr2A 81.545 233 30 9 1529 1751 32808092 32807863 5.070000e-41 180.0
11 TraesCS2B01G346700 chr2A 97.015 67 1 1 6278 6344 566858361 566858426 1.880000e-20 111.0
12 TraesCS2B01G346700 chr2D 88.046 3413 256 72 1847 5176 420895135 420898478 0.000000e+00 3903.0
13 TraesCS2B01G346700 chr2D 90.790 1379 77 23 493 1847 420893632 420894984 0.000000e+00 1797.0
14 TraesCS2B01G346700 chr2D 92.553 1128 55 19 5248 6370 420898628 420899731 0.000000e+00 1591.0
15 TraesCS2B01G346700 chr2D 89.575 259 23 3 239 495 420893069 420893325 6.160000e-85 326.0
16 TraesCS2B01G346700 chr2D 86.321 212 29 0 3311 3522 420896576 420896787 1.380000e-56 231.0
17 TraesCS2B01G346700 chr2D 84.434 212 33 0 3341 3552 420896546 420896757 6.470000e-50 209.0
18 TraesCS2B01G346700 chr6B 81.545 233 30 9 1529 1751 24725172 24725401 5.070000e-41 180.0
19 TraesCS2B01G346700 chr6B 77.647 170 30 6 312 477 278354324 278354159 5.260000e-16 97.1
20 TraesCS2B01G346700 chr5A 80.579 242 34 9 1529 1760 362401859 362401621 2.360000e-39 174.0
21 TraesCS2B01G346700 chr5D 81.122 196 24 10 286 473 352280704 352280514 1.850000e-30 145.0
22 TraesCS2B01G346700 chr5D 81.250 80 11 3 316 394 375754631 375754555 1.920000e-05 62.1
23 TraesCS2B01G346700 chr1A 80.117 171 26 6 318 484 10750237 10750071 3.120000e-23 121.0
24 TraesCS2B01G346700 chr3B 80.537 149 23 6 4272 4418 735932831 735932687 6.750000e-20 110.0
25 TraesCS2B01G346700 chr3B 89.583 48 5 0 348 395 665446717 665446764 1.920000e-05 62.1
26 TraesCS2B01G346700 chr1D 77.778 171 30 6 318 484 9442209 9442043 1.460000e-16 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G346700 chr2B 493559361 493565730 6369 False 4064.666667 11764 89.937333 1 6370 3 chr2B.!!$F1 6369
1 TraesCS2B01G346700 chr2A 566850763 566858426 7663 False 1301.000000 5125 90.391429 535 6344 7 chr2A.!!$F1 5809
2 TraesCS2B01G346700 chr2A 32807485 32808092 607 True 233.500000 287 81.990500 1529 2203 2 chr2A.!!$R1 674
3 TraesCS2B01G346700 chr2D 420893069 420899731 6662 False 1342.833333 3903 88.619833 239 6370 6 chr2D.!!$F1 6131

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
78 79 0.030638 TTGCTGACGCTTCTTTTGCC 59.969 50.0 0.00 0.00 36.97 4.52 F
100 101 0.041238 ATCGGGAGAGGTGTGGAAGA 59.959 55.0 0.00 0.00 45.48 2.87 F
101 102 0.041238 TCGGGAGAGGTGTGGAAGAT 59.959 55.0 0.00 0.00 0.00 2.40 F
210 211 0.099259 TATACGTTGAGGGACGCGTG 59.901 55.0 20.70 0.83 46.47 5.34 F
314 316 0.108138 GCAGATTGTAGACGTGGGCT 60.108 55.0 0.00 0.00 0.00 5.19 F
413 415 0.593128 GGAGACGCACAAACAGCAAT 59.407 50.0 0.00 0.00 0.00 3.56 F
1469 1821 0.608308 GGGTGTGTTGGGGAGTAAGC 60.608 60.0 0.00 0.00 0.00 3.09 F
1529 1884 1.398692 AGCCCGTGACACATTTTTGT 58.601 45.0 6.37 0.00 0.00 2.83 F
3242 3778 1.398692 TGGGTTGTTCAAGTTGGAGC 58.601 50.0 2.34 0.00 0.00 4.70 F
4097 4663 0.403655 TGTGCTGACCATTAGCCCAA 59.596 50.0 0.00 0.00 40.42 4.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1014 1353 0.324943 CGAGGGTGATGGTGACCTTT 59.675 55.000 2.11 0.00 32.42 3.11 R
1259 1598 0.389296 TGTATCCACCACTTGACGCG 60.389 55.000 3.53 3.53 0.00 6.01 R
1588 1943 0.539438 GGACAACAGGGCATGACCAA 60.539 55.000 22.78 0.00 42.05 3.67 R
1589 1944 1.074775 GGACAACAGGGCATGACCA 59.925 57.895 22.78 0.00 42.05 4.02 R
2103 2629 1.452145 CTAGCCTCTCTCGGACAGGC 61.452 65.000 10.72 10.72 45.30 4.85 R
2400 2935 0.960861 GGGCCCTACTTCACAAGTGC 60.961 60.000 17.04 0.00 42.84 4.40 R
2416 2952 0.394899 AGCTAATGAACTGGCAGGGC 60.395 55.000 20.34 10.60 0.00 5.19 R
3404 3940 0.529555 GGAGACATGCCTCTTCGAGC 60.530 60.000 9.04 0.00 33.79 5.03 R
4109 4675 0.517316 GCCTGTAACCAAGAGCAACG 59.483 55.000 0.00 0.00 0.00 4.10 R
5751 6474 0.107703 CCGCTACTTCCTCCATGCAA 60.108 55.000 0.00 0.00 0.00 4.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.898705 GTGGTCAGAGATGACATCACC 58.101 52.381 17.57 15.19 40.38 4.02
21 22 2.234661 GTGGTCAGAGATGACATCACCA 59.765 50.000 17.25 17.25 40.38 4.17
22 23 3.109928 TGGTCAGAGATGACATCACCAT 58.890 45.455 17.25 0.00 40.38 3.55
23 24 3.133542 TGGTCAGAGATGACATCACCATC 59.866 47.826 17.25 7.54 40.38 3.51
24 25 3.379240 GTCAGAGATGACATCACCATCG 58.621 50.000 17.57 3.84 43.73 3.84
25 26 2.363359 TCAGAGATGACATCACCATCGG 59.637 50.000 17.57 7.12 43.73 4.18
26 27 1.069823 AGAGATGACATCACCATCGGC 59.930 52.381 17.57 0.00 43.73 5.54
27 28 0.832626 AGATGACATCACCATCGGCA 59.167 50.000 17.57 0.00 43.73 5.69
28 29 1.419012 AGATGACATCACCATCGGCAT 59.581 47.619 17.57 0.00 43.73 4.40
29 30 1.534163 GATGACATCACCATCGGCATG 59.466 52.381 10.67 0.00 32.23 4.06
41 42 4.739046 CATCGGCATGGAATAAAGTCTC 57.261 45.455 0.00 0.00 0.00 3.36
42 43 2.821546 TCGGCATGGAATAAAGTCTCG 58.178 47.619 0.00 0.00 0.00 4.04
43 44 1.261619 CGGCATGGAATAAAGTCTCGC 59.738 52.381 0.00 0.00 0.00 5.03
44 45 1.604278 GGCATGGAATAAAGTCTCGCC 59.396 52.381 0.00 0.00 0.00 5.54
45 46 2.288666 GCATGGAATAAAGTCTCGCCA 58.711 47.619 0.00 0.00 0.00 5.69
46 47 2.032178 GCATGGAATAAAGTCTCGCCAC 59.968 50.000 0.00 0.00 0.00 5.01
47 48 3.270027 CATGGAATAAAGTCTCGCCACA 58.730 45.455 0.00 0.00 0.00 4.17
48 49 3.627395 TGGAATAAAGTCTCGCCACAT 57.373 42.857 0.00 0.00 0.00 3.21
49 50 3.950397 TGGAATAAAGTCTCGCCACATT 58.050 40.909 0.00 0.00 0.00 2.71
50 51 3.689161 TGGAATAAAGTCTCGCCACATTG 59.311 43.478 0.00 0.00 0.00 2.82
51 52 3.689649 GGAATAAAGTCTCGCCACATTGT 59.310 43.478 0.00 0.00 0.00 2.71
52 53 4.201822 GGAATAAAGTCTCGCCACATTGTC 60.202 45.833 0.00 0.00 0.00 3.18
53 54 1.523758 AAAGTCTCGCCACATTGTCC 58.476 50.000 0.00 0.00 0.00 4.02
54 55 0.687354 AAGTCTCGCCACATTGTCCT 59.313 50.000 0.00 0.00 0.00 3.85
55 56 0.687354 AGTCTCGCCACATTGTCCTT 59.313 50.000 0.00 0.00 0.00 3.36
56 57 0.798776 GTCTCGCCACATTGTCCTTG 59.201 55.000 0.00 0.00 0.00 3.61
57 58 0.396435 TCTCGCCACATTGTCCTTGT 59.604 50.000 0.00 0.00 0.00 3.16
58 59 1.202758 TCTCGCCACATTGTCCTTGTT 60.203 47.619 0.00 0.00 0.00 2.83
59 60 1.608590 CTCGCCACATTGTCCTTGTTT 59.391 47.619 0.00 0.00 0.00 2.83
60 61 2.028130 TCGCCACATTGTCCTTGTTTT 58.972 42.857 0.00 0.00 0.00 2.43
61 62 2.126467 CGCCACATTGTCCTTGTTTTG 58.874 47.619 0.00 0.00 0.00 2.44
62 63 1.866601 GCCACATTGTCCTTGTTTTGC 59.133 47.619 0.00 0.00 0.00 3.68
63 64 2.483538 GCCACATTGTCCTTGTTTTGCT 60.484 45.455 0.00 0.00 0.00 3.91
64 65 3.125316 CCACATTGTCCTTGTTTTGCTG 58.875 45.455 0.00 0.00 0.00 4.41
65 66 3.181477 CCACATTGTCCTTGTTTTGCTGA 60.181 43.478 0.00 0.00 0.00 4.26
66 67 3.798337 CACATTGTCCTTGTTTTGCTGAC 59.202 43.478 0.00 0.00 0.00 3.51
67 68 2.842208 TTGTCCTTGTTTTGCTGACG 57.158 45.000 0.00 0.00 0.00 4.35
68 69 0.380378 TGTCCTTGTTTTGCTGACGC 59.620 50.000 0.00 0.00 0.00 5.19
69 70 0.663153 GTCCTTGTTTTGCTGACGCT 59.337 50.000 0.00 0.00 36.97 5.07
70 71 1.065551 GTCCTTGTTTTGCTGACGCTT 59.934 47.619 0.00 0.00 36.97 4.68
71 72 1.333619 TCCTTGTTTTGCTGACGCTTC 59.666 47.619 0.00 0.00 36.97 3.86
72 73 1.334869 CCTTGTTTTGCTGACGCTTCT 59.665 47.619 0.00 0.00 36.97 2.85
73 74 2.223572 CCTTGTTTTGCTGACGCTTCTT 60.224 45.455 0.00 0.00 36.97 2.52
74 75 3.438360 CTTGTTTTGCTGACGCTTCTTT 58.562 40.909 0.00 0.00 36.97 2.52
75 76 3.502191 TGTTTTGCTGACGCTTCTTTT 57.498 38.095 0.00 0.00 36.97 2.27
76 77 3.178267 TGTTTTGCTGACGCTTCTTTTG 58.822 40.909 0.00 0.00 36.97 2.44
77 78 1.838913 TTTGCTGACGCTTCTTTTGC 58.161 45.000 0.00 0.00 36.97 3.68
78 79 0.030638 TTGCTGACGCTTCTTTTGCC 59.969 50.000 0.00 0.00 36.97 4.52
79 80 1.100463 TGCTGACGCTTCTTTTGCCA 61.100 50.000 0.00 0.00 36.97 4.92
80 81 0.661483 GCTGACGCTTCTTTTGCCAC 60.661 55.000 0.00 0.00 0.00 5.01
81 82 0.662619 CTGACGCTTCTTTTGCCACA 59.337 50.000 0.00 0.00 0.00 4.17
82 83 1.267806 CTGACGCTTCTTTTGCCACAT 59.732 47.619 0.00 0.00 0.00 3.21
83 84 1.266718 TGACGCTTCTTTTGCCACATC 59.733 47.619 0.00 0.00 0.00 3.06
84 85 0.238289 ACGCTTCTTTTGCCACATCG 59.762 50.000 0.00 0.00 0.00 3.84
85 86 0.454957 CGCTTCTTTTGCCACATCGG 60.455 55.000 0.00 0.00 38.11 4.18
86 87 0.109132 GCTTCTTTTGCCACATCGGG 60.109 55.000 0.00 0.00 34.06 5.14
87 88 1.533625 CTTCTTTTGCCACATCGGGA 58.466 50.000 0.00 0.00 34.06 5.14
88 89 1.470098 CTTCTTTTGCCACATCGGGAG 59.530 52.381 0.00 0.00 35.90 4.30
89 90 0.690192 TCTTTTGCCACATCGGGAGA 59.310 50.000 0.00 0.00 46.90 3.71
90 91 1.089920 CTTTTGCCACATCGGGAGAG 58.910 55.000 0.00 0.00 45.48 3.20
97 98 4.034246 CATCGGGAGAGGTGTGGA 57.966 61.111 0.00 0.00 45.48 4.02
98 99 2.286826 CATCGGGAGAGGTGTGGAA 58.713 57.895 0.00 0.00 45.48 3.53
99 100 0.176680 CATCGGGAGAGGTGTGGAAG 59.823 60.000 0.00 0.00 45.48 3.46
100 101 0.041238 ATCGGGAGAGGTGTGGAAGA 59.959 55.000 0.00 0.00 45.48 2.87
101 102 0.041238 TCGGGAGAGGTGTGGAAGAT 59.959 55.000 0.00 0.00 0.00 2.40
102 103 0.176680 CGGGAGAGGTGTGGAAGATG 59.823 60.000 0.00 0.00 0.00 2.90
103 104 0.543749 GGGAGAGGTGTGGAAGATGG 59.456 60.000 0.00 0.00 0.00 3.51
104 105 1.280457 GGAGAGGTGTGGAAGATGGT 58.720 55.000 0.00 0.00 0.00 3.55
105 106 1.065854 GGAGAGGTGTGGAAGATGGTG 60.066 57.143 0.00 0.00 0.00 4.17
106 107 1.625818 GAGAGGTGTGGAAGATGGTGT 59.374 52.381 0.00 0.00 0.00 4.16
107 108 2.832129 GAGAGGTGTGGAAGATGGTGTA 59.168 50.000 0.00 0.00 0.00 2.90
108 109 3.452627 GAGAGGTGTGGAAGATGGTGTAT 59.547 47.826 0.00 0.00 0.00 2.29
109 110 3.452627 AGAGGTGTGGAAGATGGTGTATC 59.547 47.826 0.00 0.00 35.97 2.24
110 111 2.505819 AGGTGTGGAAGATGGTGTATCC 59.494 50.000 0.00 0.00 36.40 2.59
111 112 2.505819 GGTGTGGAAGATGGTGTATCCT 59.494 50.000 0.00 0.00 36.40 3.24
112 113 3.054361 GGTGTGGAAGATGGTGTATCCTT 60.054 47.826 0.00 0.00 36.40 3.36
113 114 4.163458 GGTGTGGAAGATGGTGTATCCTTA 59.837 45.833 0.00 0.00 36.40 2.69
114 115 5.360591 GTGTGGAAGATGGTGTATCCTTAG 58.639 45.833 0.00 0.00 36.40 2.18
115 116 5.128827 GTGTGGAAGATGGTGTATCCTTAGA 59.871 44.000 0.00 0.00 36.40 2.10
116 117 5.905331 TGTGGAAGATGGTGTATCCTTAGAT 59.095 40.000 0.00 0.00 36.40 1.98
117 118 6.042093 TGTGGAAGATGGTGTATCCTTAGATC 59.958 42.308 0.00 0.00 36.40 2.75
118 119 6.042093 GTGGAAGATGGTGTATCCTTAGATCA 59.958 42.308 0.00 0.00 36.40 2.92
119 120 6.789457 TGGAAGATGGTGTATCCTTAGATCAT 59.211 38.462 0.00 0.00 36.40 2.45
120 121 7.102346 GGAAGATGGTGTATCCTTAGATCATG 58.898 42.308 0.00 0.00 36.40 3.07
121 122 7.256475 GGAAGATGGTGTATCCTTAGATCATGT 60.256 40.741 0.00 0.00 36.40 3.21
122 123 7.623999 AGATGGTGTATCCTTAGATCATGTT 57.376 36.000 0.00 0.00 36.40 2.71
123 124 7.675062 AGATGGTGTATCCTTAGATCATGTTC 58.325 38.462 0.00 0.00 36.40 3.18
124 125 7.512058 AGATGGTGTATCCTTAGATCATGTTCT 59.488 37.037 11.00 11.00 36.40 3.01
125 126 7.437713 TGGTGTATCCTTAGATCATGTTCTT 57.562 36.000 11.45 0.00 37.07 2.52
126 127 7.500992 TGGTGTATCCTTAGATCATGTTCTTC 58.499 38.462 11.45 0.00 37.07 2.87
127 128 6.931840 GGTGTATCCTTAGATCATGTTCTTCC 59.068 42.308 11.45 0.00 33.67 3.46
128 129 6.931840 GTGTATCCTTAGATCATGTTCTTCCC 59.068 42.308 11.45 0.00 33.67 3.97
129 130 4.672587 TCCTTAGATCATGTTCTTCCCG 57.327 45.455 11.45 0.00 0.00 5.14
130 131 4.030913 TCCTTAGATCATGTTCTTCCCGT 58.969 43.478 11.45 0.00 0.00 5.28
131 132 4.099573 TCCTTAGATCATGTTCTTCCCGTC 59.900 45.833 11.45 0.00 0.00 4.79
132 133 4.100189 CCTTAGATCATGTTCTTCCCGTCT 59.900 45.833 11.45 0.00 0.00 4.18
133 134 3.533606 AGATCATGTTCTTCCCGTCTG 57.466 47.619 0.16 0.00 0.00 3.51
134 135 2.834549 AGATCATGTTCTTCCCGTCTGT 59.165 45.455 0.16 0.00 0.00 3.41
135 136 2.743636 TCATGTTCTTCCCGTCTGTC 57.256 50.000 0.00 0.00 0.00 3.51
136 137 1.067846 TCATGTTCTTCCCGTCTGTCG 60.068 52.381 0.00 0.00 39.52 4.35
137 138 0.966920 ATGTTCTTCCCGTCTGTCGT 59.033 50.000 0.00 0.00 37.94 4.34
138 139 0.748450 TGTTCTTCCCGTCTGTCGTT 59.252 50.000 0.00 0.00 37.94 3.85
139 140 1.137479 TGTTCTTCCCGTCTGTCGTTT 59.863 47.619 0.00 0.00 37.94 3.60
140 141 2.207590 GTTCTTCCCGTCTGTCGTTTT 58.792 47.619 0.00 0.00 37.94 2.43
141 142 2.144482 TCTTCCCGTCTGTCGTTTTC 57.856 50.000 0.00 0.00 37.94 2.29
142 143 1.684983 TCTTCCCGTCTGTCGTTTTCT 59.315 47.619 0.00 0.00 37.94 2.52
143 144 2.101917 TCTTCCCGTCTGTCGTTTTCTT 59.898 45.455 0.00 0.00 37.94 2.52
144 145 2.607631 TCCCGTCTGTCGTTTTCTTT 57.392 45.000 0.00 0.00 37.94 2.52
145 146 2.908916 TCCCGTCTGTCGTTTTCTTTT 58.091 42.857 0.00 0.00 37.94 2.27
146 147 2.610374 TCCCGTCTGTCGTTTTCTTTTG 59.390 45.455 0.00 0.00 37.94 2.44
147 148 2.372350 CCGTCTGTCGTTTTCTTTTGC 58.628 47.619 0.00 0.00 37.94 3.68
148 149 2.223157 CCGTCTGTCGTTTTCTTTTGCA 60.223 45.455 0.00 0.00 37.94 4.08
149 150 3.029074 CGTCTGTCGTTTTCTTTTGCAG 58.971 45.455 0.00 0.00 34.52 4.41
150 151 3.363178 GTCTGTCGTTTTCTTTTGCAGG 58.637 45.455 0.00 0.00 0.00 4.85
151 152 3.013921 TCTGTCGTTTTCTTTTGCAGGT 58.986 40.909 0.00 0.00 0.00 4.00
152 153 3.442273 TCTGTCGTTTTCTTTTGCAGGTT 59.558 39.130 0.00 0.00 0.00 3.50
153 154 4.082463 TCTGTCGTTTTCTTTTGCAGGTTT 60.082 37.500 0.00 0.00 0.00 3.27
154 155 3.923461 TGTCGTTTTCTTTTGCAGGTTTG 59.077 39.130 0.00 0.00 0.00 2.93
155 156 3.924073 GTCGTTTTCTTTTGCAGGTTTGT 59.076 39.130 0.00 0.00 0.00 2.83
156 157 4.031314 GTCGTTTTCTTTTGCAGGTTTGTC 59.969 41.667 0.00 0.00 0.00 3.18
157 158 3.923461 CGTTTTCTTTTGCAGGTTTGTCA 59.077 39.130 0.00 0.00 0.00 3.58
158 159 4.566360 CGTTTTCTTTTGCAGGTTTGTCAT 59.434 37.500 0.00 0.00 0.00 3.06
159 160 5.500610 CGTTTTCTTTTGCAGGTTTGTCATG 60.501 40.000 0.00 0.00 0.00 3.07
160 161 3.731652 TCTTTTGCAGGTTTGTCATGG 57.268 42.857 0.00 0.00 0.00 3.66
161 162 3.030291 TCTTTTGCAGGTTTGTCATGGT 58.970 40.909 0.00 0.00 0.00 3.55
162 163 3.068024 TCTTTTGCAGGTTTGTCATGGTC 59.932 43.478 0.00 0.00 0.00 4.02
163 164 2.064434 TTGCAGGTTTGTCATGGTCA 57.936 45.000 0.00 0.00 0.00 4.02
164 165 1.317613 TGCAGGTTTGTCATGGTCAC 58.682 50.000 0.00 0.00 0.00 3.67
165 166 0.238289 GCAGGTTTGTCATGGTCACG 59.762 55.000 0.00 0.00 0.00 4.35
166 167 1.593196 CAGGTTTGTCATGGTCACGT 58.407 50.000 0.00 0.00 0.00 4.49
167 168 1.946768 CAGGTTTGTCATGGTCACGTT 59.053 47.619 0.00 0.00 0.00 3.99
168 169 1.946768 AGGTTTGTCATGGTCACGTTG 59.053 47.619 0.00 0.00 0.00 4.10
169 170 1.673920 GGTTTGTCATGGTCACGTTGT 59.326 47.619 0.00 0.00 0.00 3.32
170 171 2.540769 GGTTTGTCATGGTCACGTTGTG 60.541 50.000 0.00 0.00 34.45 3.33
171 172 0.660488 TTGTCATGGTCACGTTGTGC 59.340 50.000 0.00 0.00 32.98 4.57
172 173 0.179059 TGTCATGGTCACGTTGTGCT 60.179 50.000 0.00 0.00 32.98 4.40
173 174 0.512952 GTCATGGTCACGTTGTGCTC 59.487 55.000 0.00 0.00 32.98 4.26
174 175 0.602638 TCATGGTCACGTTGTGCTCC 60.603 55.000 0.00 0.00 32.98 4.70
175 176 0.884259 CATGGTCACGTTGTGCTCCA 60.884 55.000 13.04 13.04 39.69 3.86
176 177 0.603707 ATGGTCACGTTGTGCTCCAG 60.604 55.000 14.90 0.00 39.17 3.86
177 178 1.069090 GGTCACGTTGTGCTCCAGA 59.931 57.895 0.00 0.00 32.98 3.86
178 179 0.946221 GGTCACGTTGTGCTCCAGAG 60.946 60.000 0.00 0.00 32.98 3.35
191 192 3.444703 CTCCAGAGCAATAACGTAGCT 57.555 47.619 4.67 4.67 42.17 3.32
192 193 4.569761 CTCCAGAGCAATAACGTAGCTA 57.430 45.455 4.96 0.00 39.02 3.32
193 194 5.127693 CTCCAGAGCAATAACGTAGCTAT 57.872 43.478 0.00 0.05 39.02 2.97
194 195 6.255596 CTCCAGAGCAATAACGTAGCTATA 57.744 41.667 0.00 0.00 39.02 1.31
195 196 6.010294 TCCAGAGCAATAACGTAGCTATAC 57.990 41.667 0.00 0.00 39.02 1.47
207 208 0.384669 AGCTATACGTTGAGGGACGC 59.615 55.000 0.00 0.00 46.47 5.19
208 209 0.933509 GCTATACGTTGAGGGACGCG 60.934 60.000 3.53 3.53 46.47 6.01
209 210 0.379669 CTATACGTTGAGGGACGCGT 59.620 55.000 13.85 13.85 46.47 6.01
210 211 0.099259 TATACGTTGAGGGACGCGTG 59.901 55.000 20.70 0.83 46.47 5.34
211 212 1.588824 ATACGTTGAGGGACGCGTGA 61.589 55.000 20.70 0.00 46.47 4.35
212 213 2.191354 TACGTTGAGGGACGCGTGAG 62.191 60.000 20.70 0.61 46.47 3.51
213 214 2.649034 GTTGAGGGACGCGTGAGA 59.351 61.111 20.70 0.00 0.00 3.27
214 215 1.215647 GTTGAGGGACGCGTGAGAT 59.784 57.895 20.70 0.00 0.00 2.75
215 216 0.389948 GTTGAGGGACGCGTGAGATT 60.390 55.000 20.70 0.00 0.00 2.40
216 217 0.320374 TTGAGGGACGCGTGAGATTT 59.680 50.000 20.70 0.00 0.00 2.17
217 218 0.389817 TGAGGGACGCGTGAGATTTG 60.390 55.000 20.70 0.00 0.00 2.32
218 219 0.389948 GAGGGACGCGTGAGATTTGT 60.390 55.000 20.70 0.00 0.00 2.83
219 220 0.670546 AGGGACGCGTGAGATTTGTG 60.671 55.000 20.70 0.00 0.00 3.33
220 221 0.949105 GGGACGCGTGAGATTTGTGT 60.949 55.000 20.70 0.00 0.00 3.72
221 222 0.865769 GGACGCGTGAGATTTGTGTT 59.134 50.000 20.70 0.00 0.00 3.32
222 223 1.263217 GGACGCGTGAGATTTGTGTTT 59.737 47.619 20.70 0.00 0.00 2.83
223 224 2.286772 GGACGCGTGAGATTTGTGTTTT 60.287 45.455 20.70 0.00 0.00 2.43
224 225 3.359654 GACGCGTGAGATTTGTGTTTTT 58.640 40.909 20.70 0.00 0.00 1.94
248 249 4.640771 ACTCCATCTGGCTAAAACTCAA 57.359 40.909 0.00 0.00 34.44 3.02
263 264 6.721704 AAAACTCAAAGGCTCTCTTCATTT 57.278 33.333 0.00 0.00 33.94 2.32
264 265 6.721704 AAACTCAAAGGCTCTCTTCATTTT 57.278 33.333 0.00 0.00 33.94 1.82
306 308 5.359756 ACGATTTGCTATGCAGATTGTAGA 58.640 37.500 12.38 0.00 43.10 2.59
307 309 5.235186 ACGATTTGCTATGCAGATTGTAGAC 59.765 40.000 12.38 0.00 43.10 2.59
309 311 3.801114 TGCTATGCAGATTGTAGACGT 57.199 42.857 0.00 0.00 33.32 4.34
313 315 0.391130 TGCAGATTGTAGACGTGGGC 60.391 55.000 0.00 0.00 0.00 5.36
314 316 0.108138 GCAGATTGTAGACGTGGGCT 60.108 55.000 0.00 0.00 0.00 5.19
333 335 3.068873 GGCTTCTTCTGGTCTACATCGAT 59.931 47.826 0.00 0.00 0.00 3.59
340 342 8.873215 TCTTCTGGTCTACATCGATAATTTTC 57.127 34.615 0.00 0.00 0.00 2.29
342 344 8.873215 TTCTGGTCTACATCGATAATTTTCTC 57.127 34.615 0.00 0.00 0.00 2.87
346 348 6.086502 GGTCTACATCGATAATTTTCTCGACG 59.913 42.308 0.00 4.97 45.63 5.12
384 386 6.628919 TCCTAGGTTTAAACAAGTTTGCTC 57.371 37.500 19.57 0.00 34.23 4.26
387 389 2.792674 GGTTTAAACAAGTTTGCTCCGC 59.207 45.455 19.57 0.00 34.23 5.54
389 391 3.347958 TTAAACAAGTTTGCTCCGCTG 57.652 42.857 8.37 0.00 34.23 5.18
390 392 1.388547 AAACAAGTTTGCTCCGCTGA 58.611 45.000 0.00 0.00 0.00 4.26
413 415 0.593128 GGAGACGCACAAACAGCAAT 59.407 50.000 0.00 0.00 0.00 3.56
488 491 2.749621 CTCAAGGTTTCTGTATGGGTGC 59.250 50.000 0.00 0.00 0.00 5.01
490 493 3.585289 TCAAGGTTTCTGTATGGGTGCTA 59.415 43.478 0.00 0.00 0.00 3.49
495 498 6.357367 AGGTTTCTGTATGGGTGCTATTTAG 58.643 40.000 0.00 0.00 0.00 1.85
496 499 6.069615 AGGTTTCTGTATGGGTGCTATTTAGT 60.070 38.462 0.00 0.00 0.00 2.24
497 500 7.126726 AGGTTTCTGTATGGGTGCTATTTAGTA 59.873 37.037 0.00 0.00 0.00 1.82
498 501 7.937394 GGTTTCTGTATGGGTGCTATTTAGTAT 59.063 37.037 0.00 0.00 0.00 2.12
502 813 8.591072 TCTGTATGGGTGCTATTTAGTATTACC 58.409 37.037 0.00 0.00 0.00 2.85
512 823 8.703743 TGCTATTTAGTATTACCGGAAAAGGTA 58.296 33.333 9.46 0.00 43.89 3.08
717 1038 4.082787 AGGCGATAAACATCACCAAACAAG 60.083 41.667 0.00 0.00 0.00 3.16
719 1040 5.219633 GCGATAAACATCACCAAACAAGTT 58.780 37.500 0.00 0.00 0.00 2.66
821 1160 0.725117 GTGCTACCAAATCGAACCCG 59.275 55.000 0.00 0.00 37.07 5.28
832 1171 3.714001 GAACCCGAGGACCCCCAC 61.714 72.222 0.00 0.00 33.88 4.61
1114 1453 3.623060 TCCTCTGTATTTTGATTGCTCGC 59.377 43.478 0.00 0.00 0.00 5.03
1115 1454 3.624861 CCTCTGTATTTTGATTGCTCGCT 59.375 43.478 0.00 0.00 0.00 4.93
1179 1518 0.730834 CGAGACGGATGATCGGATGC 60.731 60.000 7.02 0.00 32.93 3.91
1229 1568 4.637489 CGCGCGGCTAGATGCTCT 62.637 66.667 24.84 0.00 42.39 4.09
1259 1598 1.672881 AGTCATAGCTGCGATTTTGGC 59.327 47.619 0.00 0.00 0.00 4.52
1316 1655 3.647636 TCATCTCCCCTGAAGGTTCTAG 58.352 50.000 0.00 0.00 0.00 2.43
1349 1700 4.657814 AGGGTGTTGTGATTTCCTGTAT 57.342 40.909 0.00 0.00 0.00 2.29
1358 1709 8.892723 TGTTGTGATTTCCTGTATGTATTGATC 58.107 33.333 0.00 0.00 0.00 2.92
1469 1821 0.608308 GGGTGTGTTGGGGAGTAAGC 60.608 60.000 0.00 0.00 0.00 3.09
1517 1872 3.617263 GTCACTTGAATAACTAGCCCGTG 59.383 47.826 0.00 0.00 0.00 4.94
1529 1884 1.398692 AGCCCGTGACACATTTTTGT 58.601 45.000 6.37 0.00 0.00 2.83
1584 1939 7.925043 TTTCTTGTAACTAGTGTTCAAACCA 57.075 32.000 0.00 0.00 37.59 3.67
1586 1941 7.490962 TCTTGTAACTAGTGTTCAAACCATG 57.509 36.000 0.00 0.00 37.59 3.66
1588 1943 7.936847 TCTTGTAACTAGTGTTCAAACCATGAT 59.063 33.333 0.00 0.00 38.03 2.45
1589 1944 8.458573 TTGTAACTAGTGTTCAAACCATGATT 57.541 30.769 0.00 0.00 38.03 2.57
1668 2027 8.985315 TTATCATATTGCAAGTCCTGAATTCT 57.015 30.769 4.94 0.00 0.00 2.40
1752 2116 8.200792 TCCTGTTTGCACTTGTACAATTTTTAT 58.799 29.630 9.13 0.00 0.00 1.40
1766 2130 6.681777 ACAATTTTTATCTGACCAACTCAGC 58.318 36.000 0.00 0.00 45.64 4.26
1767 2131 6.491403 ACAATTTTTATCTGACCAACTCAGCT 59.509 34.615 0.00 0.00 45.64 4.24
1768 2132 7.665559 ACAATTTTTATCTGACCAACTCAGCTA 59.334 33.333 0.00 0.00 45.64 3.32
1769 2133 7.617041 ATTTTTATCTGACCAACTCAGCTAC 57.383 36.000 0.00 0.00 45.64 3.58
1770 2134 4.737855 TTATCTGACCAACTCAGCTACC 57.262 45.455 0.00 0.00 45.64 3.18
1771 2135 2.009681 TCTGACCAACTCAGCTACCA 57.990 50.000 0.00 0.00 45.64 3.25
1772 2136 1.895798 TCTGACCAACTCAGCTACCAG 59.104 52.381 0.00 0.00 45.64 4.00
1773 2137 1.620819 CTGACCAACTCAGCTACCAGT 59.379 52.381 0.00 0.00 40.23 4.00
1814 2178 4.754618 GGCTGGTTATGTTTTCTTTTTGGG 59.245 41.667 0.00 0.00 0.00 4.12
1909 2435 3.500448 TTCAGGCCATTCTGTGTTGTA 57.500 42.857 5.01 0.00 36.25 2.41
2103 2629 2.555199 CCAGTATCAGGAAGAAAGCGG 58.445 52.381 0.00 0.00 0.00 5.52
2157 2683 5.009410 GGCTGATTCTGATTTGTATGGAAGG 59.991 44.000 0.00 0.00 0.00 3.46
2285 2811 5.761726 TGCATATCAGATGTTTCAGATGGTC 59.238 40.000 0.00 0.00 31.32 4.02
2370 2902 7.285858 ACAGTCCTCCATACTCTATGTTCTAAC 59.714 40.741 0.00 0.00 34.36 2.34
2400 2935 4.395854 TGTCAGCTTGCCACTTTATATGTG 59.604 41.667 0.00 0.00 35.39 3.21
2408 2944 4.082841 TGCCACTTTATATGTGCACTTGTG 60.083 41.667 19.41 14.36 34.38 3.33
2416 2952 2.254546 TGTGCACTTGTGAAGTAGGG 57.745 50.000 19.41 0.00 40.46 3.53
2434 2970 2.110296 GCCCTGCCAGTTCATTAGC 58.890 57.895 0.00 0.00 0.00 3.09
2466 3002 9.516314 TTCTACATCACATGTCTCTTTTATACG 57.484 33.333 0.00 0.00 43.67 3.06
2533 3069 6.207928 TGTGTGTGTCTCTTTTGCATATTTG 58.792 36.000 0.00 0.00 0.00 2.32
2536 3072 6.917477 TGTGTGTCTCTTTTGCATATTTGTTC 59.083 34.615 0.00 0.00 0.00 3.18
2579 3115 7.328277 TGTACAGATGTTGCACTTTTACTTT 57.672 32.000 0.00 0.00 0.00 2.66
2582 3118 7.100458 ACAGATGTTGCACTTTTACTTTCTT 57.900 32.000 0.00 0.00 0.00 2.52
2659 3195 7.428282 TGTCTTTATGTTCAATTACTTCGCA 57.572 32.000 0.00 0.00 0.00 5.10
2737 3273 5.748152 GCATCTGTTGAAAGTGTTTGCTTAA 59.252 36.000 0.00 0.00 0.00 1.85
2975 3511 5.505173 TGATTTAAGGCTGAAGCTTATGC 57.495 39.130 13.00 13.00 41.70 3.14
3076 3612 6.012508 AGTCAAAGAAACTCCAGGGATATGAA 60.013 38.462 0.00 0.00 0.00 2.57
3100 3636 2.131023 AGAAGGGGTGATCCAGAATCC 58.869 52.381 0.00 0.00 37.22 3.01
3242 3778 1.398692 TGGGTTGTTCAAGTTGGAGC 58.601 50.000 2.34 0.00 0.00 4.70
3358 3894 2.966050 AGAAGTGTTCGAAGAGGCATC 58.034 47.619 0.00 0.00 38.43 3.91
3402 3938 2.365617 GAGGCATGTCTCCTCCGATAAA 59.634 50.000 16.81 0.00 43.32 1.40
3404 3940 3.070018 GGCATGTCTCCTCCGATAAATG 58.930 50.000 0.00 0.00 0.00 2.32
3427 3963 2.317149 GAAGAGGCATGTCTCCCCCG 62.317 65.000 23.51 0.00 34.46 5.73
3431 3967 2.801631 GGCATGTCTCCCCCGAGAG 61.802 68.421 0.00 0.00 45.93 3.20
3534 4070 3.243907 CCTCCAAGAAGTGTTCGAAGAGT 60.244 47.826 0.00 0.00 38.43 3.24
3685 4221 3.118531 AGACAGCTCTACCATTGGGATT 58.881 45.455 7.78 0.00 38.05 3.01
3691 4227 4.288105 AGCTCTACCATTGGGATTGATAGG 59.712 45.833 7.78 0.00 38.05 2.57
3840 4376 4.520492 TGCTCTTCCTTTTCAATGGTCTTC 59.480 41.667 0.00 0.00 0.00 2.87
3885 4427 7.199766 TGTCCTACAATGTTGTTGTGAAATTC 58.800 34.615 3.45 0.00 42.35 2.17
3914 4457 8.408601 CAATTATGATTTGAAAGGGAACTCGAT 58.591 33.333 0.00 0.00 42.68 3.59
3916 4459 5.880054 TGATTTGAAAGGGAACTCGATTC 57.120 39.130 0.00 0.00 42.68 2.52
4003 4546 4.264253 TGTATTTGCTTAGTGCTGCTCAT 58.736 39.130 0.00 0.00 43.37 2.90
4009 4552 3.055891 TGCTTAGTGCTGCTCATTACAGA 60.056 43.478 0.00 0.00 43.37 3.41
4010 4553 4.125703 GCTTAGTGCTGCTCATTACAGAT 58.874 43.478 0.00 0.00 37.32 2.90
4014 4557 1.561076 TGCTGCTCATTACAGATGGGT 59.439 47.619 0.00 0.00 37.32 4.51
4094 4660 1.402968 CATGTGTGCTGACCATTAGCC 59.597 52.381 0.00 0.00 40.42 3.93
4097 4663 0.403655 TGTGCTGACCATTAGCCCAA 59.596 50.000 0.00 0.00 40.42 4.12
4109 4675 5.185828 ACCATTAGCCCAATTTTCTCTTCAC 59.814 40.000 0.00 0.00 0.00 3.18
4115 4681 3.004734 CCCAATTTTCTCTTCACGTTGCT 59.995 43.478 0.00 0.00 0.00 3.91
4131 4697 1.896220 TGCTCTTGGTTACAGGCTTG 58.104 50.000 0.00 0.00 0.00 4.01
4139 4705 2.571653 TGGTTACAGGCTTGTAGCTGAT 59.428 45.455 19.55 0.00 41.99 2.90
4140 4706 3.009033 TGGTTACAGGCTTGTAGCTGATT 59.991 43.478 19.55 0.00 41.99 2.57
4141 4707 4.010349 GGTTACAGGCTTGTAGCTGATTT 58.990 43.478 19.55 0.00 41.99 2.17
4191 4757 7.041167 TGTTGATGTGAGAATTTTTCGACATCT 60.041 33.333 22.21 0.00 45.16 2.90
4231 4797 2.594654 CGAGTCTTGCGCCGATTATATC 59.405 50.000 4.18 0.00 0.00 1.63
4254 4820 3.127548 AGCGAGTTTCTGGTTATGCAATG 59.872 43.478 0.00 0.00 0.00 2.82
4270 4836 8.961092 GTTATGCAATGATTGTGTTATGTGATC 58.039 33.333 7.05 0.00 0.00 2.92
4289 4855 6.942005 TGTGATCTTGCTCCAGATTTTCTAAA 59.058 34.615 0.00 0.00 33.36 1.85
4394 4961 2.043115 TCTCTTTCAGGCTGAGGAGGTA 59.957 50.000 30.73 19.54 32.73 3.08
4425 4993 8.522830 TCCATTATCTTGATTGTTTCCAACTTC 58.477 33.333 0.00 0.00 32.26 3.01
4532 5105 4.771590 TGATGCCTTCTGTTTGATGTTC 57.228 40.909 0.00 0.00 0.00 3.18
4541 5114 4.143543 TCTGTTTGATGTTCTGCATGGAA 58.856 39.130 0.00 0.00 38.06 3.53
4595 5174 8.644374 AGTGGTTATTTTTGTATAAGCTGGAA 57.356 30.769 0.00 0.00 38.60 3.53
4623 5202 6.223852 TCATTACAATCTCTATCCTTTCGGC 58.776 40.000 0.00 0.00 0.00 5.54
4636 5215 3.385111 TCCTTTCGGCCTCTTATCTCTTC 59.615 47.826 0.00 0.00 0.00 2.87
4644 5223 5.600696 GGCCTCTTATCTCTTCTCTTTCAG 58.399 45.833 0.00 0.00 0.00 3.02
4701 5304 6.837568 ACCCTATTCGATCTTTCAACTACCTA 59.162 38.462 0.00 0.00 0.00 3.08
4718 5322 9.607988 CAACTACCTATGTACCATTGAATGTTA 57.392 33.333 4.27 0.00 0.00 2.41
4749 5353 2.294979 TCTGCATGATCCAGAATGTGC 58.705 47.619 0.00 0.00 36.46 4.57
4751 5355 2.688446 CTGCATGATCCAGAATGTGCTT 59.312 45.455 0.00 0.00 33.95 3.91
4771 5380 6.036517 GTGCTTGTCAGTCCATTCAAGTATAG 59.963 42.308 0.00 0.00 39.28 1.31
5033 5649 7.027161 ACACTGGAAACATCAAATATTAACGC 58.973 34.615 0.00 0.00 41.51 4.84
5154 5772 7.697691 TGTAATTTCTTTAGCATGCTTCTAGC 58.302 34.615 28.02 7.36 42.82 3.42
5176 5794 3.949754 CACTTGGACATGCATAATGGAGT 59.050 43.478 0.00 0.00 40.94 3.85
5207 5834 4.750021 TCAGAATCTAGCAAGAGCATGT 57.250 40.909 0.00 0.00 45.49 3.21
5208 5835 5.095145 TCAGAATCTAGCAAGAGCATGTT 57.905 39.130 0.00 0.00 45.49 2.71
5215 5842 9.823098 GAATCTAGCAAGAGCATGTTAAATATG 57.177 33.333 0.00 0.00 45.49 1.78
5216 5843 9.565090 AATCTAGCAAGAGCATGTTAAATATGA 57.435 29.630 0.00 0.00 45.49 2.15
5217 5844 8.370493 TCTAGCAAGAGCATGTTAAATATGAC 57.630 34.615 0.00 0.23 45.49 3.06
5268 5985 9.438228 GTAGTCTTGTAGAATTTAGGCTTTCTT 57.562 33.333 5.33 0.00 34.22 2.52
5282 5999 5.902681 AGGCTTTCTTTTGTAGTTTTGACC 58.097 37.500 0.00 0.00 0.00 4.02
5290 6007 6.990349 TCTTTTGTAGTTTTGACCTAGAGTGG 59.010 38.462 0.00 0.00 0.00 4.00
5337 6054 3.131223 CAGGAAGAAGATACTCCTTGCGA 59.869 47.826 0.00 0.00 34.17 5.10
5744 6467 3.885297 CCAAATGGCCATCGAATTCTACT 59.115 43.478 21.08 0.00 0.00 2.57
5748 6471 4.322080 TGGCCATCGAATTCTACTAGTG 57.678 45.455 0.00 0.00 0.00 2.74
5751 6474 5.116882 GGCCATCGAATTCTACTAGTGTTT 58.883 41.667 5.39 0.00 0.00 2.83
5769 6492 1.737838 TTTGCATGGAGGAAGTAGCG 58.262 50.000 0.00 0.00 0.00 4.26
5780 6503 4.939439 GGAGGAAGTAGCGGATTGTTTTTA 59.061 41.667 0.00 0.00 0.00 1.52
5781 6504 5.413523 GGAGGAAGTAGCGGATTGTTTTTAA 59.586 40.000 0.00 0.00 0.00 1.52
5857 6581 2.295909 TGTCCATAGTTTTGTTGCCTGC 59.704 45.455 0.00 0.00 0.00 4.85
5870 6597 0.912006 TGCCTGCATACCAGTACCCA 60.912 55.000 0.00 0.00 40.06 4.51
5872 6599 0.179045 CCTGCATACCAGTACCCAGC 60.179 60.000 0.00 0.00 40.06 4.85
5873 6600 0.833287 CTGCATACCAGTACCCAGCT 59.167 55.000 0.00 0.00 36.79 4.24
5876 6603 2.289565 GCATACCAGTACCCAGCTTTC 58.710 52.381 0.00 0.00 0.00 2.62
5877 6604 2.355716 GCATACCAGTACCCAGCTTTCA 60.356 50.000 0.00 0.00 0.00 2.69
5878 6605 3.872240 GCATACCAGTACCCAGCTTTCAA 60.872 47.826 0.00 0.00 0.00 2.69
5879 6606 4.526970 CATACCAGTACCCAGCTTTCAAT 58.473 43.478 0.00 0.00 0.00 2.57
5880 6607 3.525800 ACCAGTACCCAGCTTTCAATT 57.474 42.857 0.00 0.00 0.00 2.32
5881 6608 3.157087 ACCAGTACCCAGCTTTCAATTG 58.843 45.455 0.00 0.00 0.00 2.32
5882 6609 2.493278 CCAGTACCCAGCTTTCAATTGG 59.507 50.000 5.42 0.00 0.00 3.16
5894 6622 4.507756 GCTTTCAATTGGGTGTTGTTCTTC 59.492 41.667 5.42 0.00 0.00 2.87
5896 6624 4.916983 TCAATTGGGTGTTGTTCTTCAG 57.083 40.909 5.42 0.00 0.00 3.02
5898 6626 2.136298 TTGGGTGTTGTTCTTCAGCA 57.864 45.000 0.00 0.00 35.02 4.41
5903 6631 3.550842 GGGTGTTGTTCTTCAGCAATGTC 60.551 47.826 0.00 0.00 38.86 3.06
5920 6648 0.736053 GTCTGGGACGCTCTACTCTG 59.264 60.000 0.00 0.00 0.00 3.35
5923 6651 2.172930 TCTGGGACGCTCTACTCTGTAT 59.827 50.000 0.00 0.00 0.00 2.29
5924 6652 2.952978 CTGGGACGCTCTACTCTGTATT 59.047 50.000 0.00 0.00 0.00 1.89
5925 6653 2.688446 TGGGACGCTCTACTCTGTATTG 59.312 50.000 0.00 0.00 0.00 1.90
5927 6655 2.034812 GGACGCTCTACTCTGTATTGGG 59.965 54.545 0.00 0.00 0.00 4.12
5928 6656 1.409427 ACGCTCTACTCTGTATTGGGC 59.591 52.381 0.00 0.00 0.00 5.36
5929 6657 1.269831 CGCTCTACTCTGTATTGGGCC 60.270 57.143 0.00 0.00 0.00 5.80
5930 6658 1.269831 GCTCTACTCTGTATTGGGCCG 60.270 57.143 0.00 0.00 0.00 6.13
5931 6659 2.032620 CTCTACTCTGTATTGGGCCGT 58.967 52.381 0.00 0.00 0.00 5.68
5934 6662 0.537188 ACTCTGTATTGGGCCGTCTG 59.463 55.000 0.00 0.00 0.00 3.51
5935 6663 0.537188 CTCTGTATTGGGCCGTCTGT 59.463 55.000 0.00 0.00 0.00 3.41
5936 6664 0.981183 TCTGTATTGGGCCGTCTGTT 59.019 50.000 0.00 0.00 0.00 3.16
5937 6665 2.167693 CTCTGTATTGGGCCGTCTGTTA 59.832 50.000 0.00 0.00 0.00 2.41
5938 6666 2.167693 TCTGTATTGGGCCGTCTGTTAG 59.832 50.000 0.00 0.00 0.00 2.34
5939 6667 2.167693 CTGTATTGGGCCGTCTGTTAGA 59.832 50.000 0.00 0.00 0.00 2.10
5948 6676 3.243468 GGCCGTCTGTTAGAAGGATAGAC 60.243 52.174 13.77 0.00 45.13 2.59
5956 6684 4.142227 TGTTAGAAGGATAGACCAGCGTTC 60.142 45.833 0.00 0.00 42.04 3.95
5962 6690 2.609459 GGATAGACCAGCGTTCAACATG 59.391 50.000 0.00 0.00 38.79 3.21
6070 6798 7.064609 CGCCAGTTCTTTCTTCTGTTATCATTA 59.935 37.037 0.00 0.00 0.00 1.90
6098 6826 1.823899 GCGAACTATTGGCCCTGGG 60.824 63.158 8.86 8.86 0.00 4.45
6106 6834 1.517538 ATTGGCCCTGGGAATGGACA 61.518 55.000 19.27 1.69 38.09 4.02
6110 6838 0.186873 GCCCTGGGAATGGACATGAT 59.813 55.000 19.27 0.00 0.00 2.45
6121 6849 2.607499 TGGACATGATTGTTTGGCCTT 58.393 42.857 3.32 0.00 41.95 4.35
6126 6854 5.069516 GGACATGATTGTTTGGCCTTATCAT 59.930 40.000 3.32 8.35 38.08 2.45
6150 6888 4.650734 TGCTATCCAAACTGTCACAATGA 58.349 39.130 0.00 0.00 0.00 2.57
6165 6903 2.489329 ACAATGAAAGGCACTGAATCGG 59.511 45.455 0.00 0.00 40.86 4.18
6206 6945 3.411517 CCCAGATGCCTCCCCGTT 61.412 66.667 0.00 0.00 0.00 4.44
6250 6989 1.056869 CACCATTAAAACGCAACCGC 58.943 50.000 0.00 0.00 38.22 5.68
6350 8664 2.203422 CCAACGCCCAAGTCCCAA 60.203 61.111 0.00 0.00 0.00 4.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.363359 CCGATGGTGATGTCATCTCTGA 59.637 50.000 13.90 2.74 38.95 3.27
5 6 2.752121 CCGATGGTGATGTCATCTCTG 58.248 52.381 13.90 3.18 38.95 3.35
6 7 1.069823 GCCGATGGTGATGTCATCTCT 59.930 52.381 13.90 0.00 38.95 3.10
7 8 1.202568 TGCCGATGGTGATGTCATCTC 60.203 52.381 13.90 10.04 38.95 2.75
8 9 0.832626 TGCCGATGGTGATGTCATCT 59.167 50.000 13.90 0.00 38.95 2.90
9 10 1.534163 CATGCCGATGGTGATGTCATC 59.466 52.381 5.83 5.83 38.04 2.92
10 11 1.601166 CATGCCGATGGTGATGTCAT 58.399 50.000 0.00 0.00 0.00 3.06
11 12 0.464193 CCATGCCGATGGTGATGTCA 60.464 55.000 0.00 0.00 43.98 3.58
12 13 2.324215 CCATGCCGATGGTGATGTC 58.676 57.895 0.00 0.00 43.98 3.06
13 14 4.565360 CCATGCCGATGGTGATGT 57.435 55.556 0.00 0.00 43.98 3.06
20 21 3.185188 CGAGACTTTATTCCATGCCGATG 59.815 47.826 0.00 0.00 0.00 3.84
21 22 3.393800 CGAGACTTTATTCCATGCCGAT 58.606 45.455 0.00 0.00 0.00 4.18
22 23 2.821546 CGAGACTTTATTCCATGCCGA 58.178 47.619 0.00 0.00 0.00 5.54
23 24 1.261619 GCGAGACTTTATTCCATGCCG 59.738 52.381 0.00 0.00 0.00 5.69
24 25 1.604278 GGCGAGACTTTATTCCATGCC 59.396 52.381 0.00 0.00 0.00 4.40
25 26 2.032178 GTGGCGAGACTTTATTCCATGC 59.968 50.000 0.00 0.00 0.00 4.06
26 27 3.270027 TGTGGCGAGACTTTATTCCATG 58.730 45.455 0.00 0.00 0.00 3.66
27 28 3.627395 TGTGGCGAGACTTTATTCCAT 57.373 42.857 0.00 0.00 0.00 3.41
28 29 3.627395 ATGTGGCGAGACTTTATTCCA 57.373 42.857 0.00 0.00 0.00 3.53
29 30 3.689649 ACAATGTGGCGAGACTTTATTCC 59.310 43.478 0.00 0.00 0.00 3.01
30 31 4.201822 GGACAATGTGGCGAGACTTTATTC 60.202 45.833 0.00 0.00 0.00 1.75
31 32 3.689649 GGACAATGTGGCGAGACTTTATT 59.310 43.478 0.00 0.00 0.00 1.40
32 33 3.055094 AGGACAATGTGGCGAGACTTTAT 60.055 43.478 0.00 0.00 0.00 1.40
33 34 2.301870 AGGACAATGTGGCGAGACTTTA 59.698 45.455 0.00 0.00 0.00 1.85
34 35 1.072331 AGGACAATGTGGCGAGACTTT 59.928 47.619 0.00 0.00 0.00 2.66
35 36 0.687354 AGGACAATGTGGCGAGACTT 59.313 50.000 0.00 0.00 0.00 3.01
36 37 0.687354 AAGGACAATGTGGCGAGACT 59.313 50.000 0.00 0.00 0.00 3.24
37 38 0.798776 CAAGGACAATGTGGCGAGAC 59.201 55.000 0.00 0.00 0.00 3.36
38 39 0.396435 ACAAGGACAATGTGGCGAGA 59.604 50.000 0.00 0.00 0.00 4.04
39 40 1.238439 AACAAGGACAATGTGGCGAG 58.762 50.000 0.00 0.00 0.00 5.03
40 41 1.686355 AAACAAGGACAATGTGGCGA 58.314 45.000 0.00 0.00 0.00 5.54
41 42 2.126467 CAAAACAAGGACAATGTGGCG 58.874 47.619 0.00 0.00 0.00 5.69
42 43 1.866601 GCAAAACAAGGACAATGTGGC 59.133 47.619 0.00 0.00 0.00 5.01
43 44 3.125316 CAGCAAAACAAGGACAATGTGG 58.875 45.455 0.00 0.00 0.00 4.17
44 45 3.798337 GTCAGCAAAACAAGGACAATGTG 59.202 43.478 0.00 0.00 0.00 3.21
45 46 3.489059 CGTCAGCAAAACAAGGACAATGT 60.489 43.478 0.00 0.00 0.00 2.71
46 47 3.044986 CGTCAGCAAAACAAGGACAATG 58.955 45.455 0.00 0.00 0.00 2.82
47 48 2.543653 GCGTCAGCAAAACAAGGACAAT 60.544 45.455 0.00 0.00 44.35 2.71
48 49 1.202245 GCGTCAGCAAAACAAGGACAA 60.202 47.619 0.00 0.00 44.35 3.18
49 50 0.380378 GCGTCAGCAAAACAAGGACA 59.620 50.000 0.00 0.00 44.35 4.02
50 51 3.164028 GCGTCAGCAAAACAAGGAC 57.836 52.632 0.00 0.00 44.35 3.85
61 62 0.661483 GTGGCAAAAGAAGCGTCAGC 60.661 55.000 1.61 0.38 45.58 4.26
62 63 0.662619 TGTGGCAAAAGAAGCGTCAG 59.337 50.000 1.61 0.00 0.00 3.51
63 64 1.266718 GATGTGGCAAAAGAAGCGTCA 59.733 47.619 1.61 0.00 0.00 4.35
64 65 1.725931 CGATGTGGCAAAAGAAGCGTC 60.726 52.381 0.00 0.00 0.00 5.19
65 66 0.238289 CGATGTGGCAAAAGAAGCGT 59.762 50.000 0.00 0.00 0.00 5.07
66 67 0.454957 CCGATGTGGCAAAAGAAGCG 60.455 55.000 0.00 0.00 0.00 4.68
67 68 0.109132 CCCGATGTGGCAAAAGAAGC 60.109 55.000 0.00 0.00 35.87 3.86
68 69 1.470098 CTCCCGATGTGGCAAAAGAAG 59.530 52.381 0.00 0.00 35.87 2.85
69 70 1.073125 TCTCCCGATGTGGCAAAAGAA 59.927 47.619 0.00 0.00 35.87 2.52
70 71 0.690192 TCTCCCGATGTGGCAAAAGA 59.310 50.000 0.00 0.00 35.87 2.52
71 72 1.089920 CTCTCCCGATGTGGCAAAAG 58.910 55.000 0.00 0.00 35.87 2.27
72 73 0.322456 CCTCTCCCGATGTGGCAAAA 60.322 55.000 0.00 0.00 35.87 2.44
73 74 1.299648 CCTCTCCCGATGTGGCAAA 59.700 57.895 0.00 0.00 35.87 3.68
74 75 1.918293 ACCTCTCCCGATGTGGCAA 60.918 57.895 0.00 0.00 35.87 4.52
75 76 2.284625 ACCTCTCCCGATGTGGCA 60.285 61.111 0.00 0.00 35.87 4.92
76 77 2.187946 CACCTCTCCCGATGTGGC 59.812 66.667 0.00 0.00 33.68 5.01
77 78 1.219124 CACACCTCTCCCGATGTGG 59.781 63.158 0.00 0.00 39.29 4.17
78 79 1.219124 CCACACCTCTCCCGATGTG 59.781 63.158 0.00 0.00 41.71 3.21
79 80 0.544357 TTCCACACCTCTCCCGATGT 60.544 55.000 0.00 0.00 0.00 3.06
80 81 0.176680 CTTCCACACCTCTCCCGATG 59.823 60.000 0.00 0.00 0.00 3.84
81 82 0.041238 TCTTCCACACCTCTCCCGAT 59.959 55.000 0.00 0.00 0.00 4.18
82 83 0.041238 ATCTTCCACACCTCTCCCGA 59.959 55.000 0.00 0.00 0.00 5.14
83 84 0.176680 CATCTTCCACACCTCTCCCG 59.823 60.000 0.00 0.00 0.00 5.14
84 85 0.543749 CCATCTTCCACACCTCTCCC 59.456 60.000 0.00 0.00 0.00 4.30
85 86 1.065854 CACCATCTTCCACACCTCTCC 60.066 57.143 0.00 0.00 0.00 3.71
86 87 1.625818 ACACCATCTTCCACACCTCTC 59.374 52.381 0.00 0.00 0.00 3.20
87 88 1.734655 ACACCATCTTCCACACCTCT 58.265 50.000 0.00 0.00 0.00 3.69
88 89 3.432326 GGATACACCATCTTCCACACCTC 60.432 52.174 0.00 0.00 38.79 3.85
89 90 2.505819 GGATACACCATCTTCCACACCT 59.494 50.000 0.00 0.00 38.79 4.00
90 91 2.505819 AGGATACACCATCTTCCACACC 59.494 50.000 0.00 0.00 42.04 4.16
91 92 3.914426 AGGATACACCATCTTCCACAC 57.086 47.619 0.00 0.00 42.04 3.82
92 93 5.277250 TCTAAGGATACACCATCTTCCACA 58.723 41.667 0.00 0.00 42.04 4.17
93 94 5.871396 TCTAAGGATACACCATCTTCCAC 57.129 43.478 0.00 0.00 42.04 4.02
94 95 6.143206 TGATCTAAGGATACACCATCTTCCA 58.857 40.000 0.00 0.00 42.04 3.53
95 96 6.672266 TGATCTAAGGATACACCATCTTCC 57.328 41.667 0.00 0.00 42.04 3.46
96 97 7.675062 ACATGATCTAAGGATACACCATCTTC 58.325 38.462 0.00 0.00 42.04 2.87
97 98 7.623999 ACATGATCTAAGGATACACCATCTT 57.376 36.000 0.00 0.00 42.04 2.40
98 99 7.512058 AGAACATGATCTAAGGATACACCATCT 59.488 37.037 3.25 0.00 42.04 2.90
99 100 7.675062 AGAACATGATCTAAGGATACACCATC 58.325 38.462 3.25 0.00 42.04 3.51
100 101 7.623999 AGAACATGATCTAAGGATACACCAT 57.376 36.000 3.25 0.00 42.04 3.55
101 102 7.419057 GGAAGAACATGATCTAAGGATACACCA 60.419 40.741 5.85 0.00 42.04 4.17
102 103 6.931840 GGAAGAACATGATCTAAGGATACACC 59.068 42.308 5.85 0.00 41.41 4.16
103 104 6.931840 GGGAAGAACATGATCTAAGGATACAC 59.068 42.308 5.85 0.00 41.41 2.90
104 105 6.239317 CGGGAAGAACATGATCTAAGGATACA 60.239 42.308 5.85 0.00 41.41 2.29
105 106 6.159988 CGGGAAGAACATGATCTAAGGATAC 58.840 44.000 5.85 0.00 31.46 2.24
106 107 5.839063 ACGGGAAGAACATGATCTAAGGATA 59.161 40.000 5.85 0.00 31.46 2.59
107 108 4.656112 ACGGGAAGAACATGATCTAAGGAT 59.344 41.667 5.85 0.00 34.45 3.24
108 109 4.030913 ACGGGAAGAACATGATCTAAGGA 58.969 43.478 5.85 0.00 0.00 3.36
109 110 4.100189 AGACGGGAAGAACATGATCTAAGG 59.900 45.833 5.85 0.00 0.00 2.69
110 111 5.046529 CAGACGGGAAGAACATGATCTAAG 58.953 45.833 5.85 1.42 0.00 2.18
111 112 4.466370 ACAGACGGGAAGAACATGATCTAA 59.534 41.667 5.85 0.00 0.00 2.10
112 113 4.023980 ACAGACGGGAAGAACATGATCTA 58.976 43.478 5.85 0.00 0.00 1.98
113 114 2.834549 ACAGACGGGAAGAACATGATCT 59.165 45.455 0.00 0.00 0.00 2.75
114 115 3.190874 GACAGACGGGAAGAACATGATC 58.809 50.000 0.00 0.00 0.00 2.92
115 116 2.417379 CGACAGACGGGAAGAACATGAT 60.417 50.000 0.00 0.00 38.46 2.45
116 117 1.067846 CGACAGACGGGAAGAACATGA 60.068 52.381 0.00 0.00 38.46 3.07
117 118 1.350193 CGACAGACGGGAAGAACATG 58.650 55.000 0.00 0.00 38.46 3.21
118 119 3.814577 CGACAGACGGGAAGAACAT 57.185 52.632 0.00 0.00 38.46 2.71
129 130 3.181500 ACCTGCAAAAGAAAACGACAGAC 60.181 43.478 0.00 0.00 0.00 3.51
130 131 3.013921 ACCTGCAAAAGAAAACGACAGA 58.986 40.909 0.00 0.00 0.00 3.41
131 132 3.420839 ACCTGCAAAAGAAAACGACAG 57.579 42.857 0.00 0.00 0.00 3.51
132 133 3.859411 AACCTGCAAAAGAAAACGACA 57.141 38.095 0.00 0.00 0.00 4.35
133 134 3.924073 ACAAACCTGCAAAAGAAAACGAC 59.076 39.130 0.00 0.00 0.00 4.34
134 135 4.170256 GACAAACCTGCAAAAGAAAACGA 58.830 39.130 0.00 0.00 0.00 3.85
135 136 3.923461 TGACAAACCTGCAAAAGAAAACG 59.077 39.130 0.00 0.00 0.00 3.60
136 137 5.220643 CCATGACAAACCTGCAAAAGAAAAC 60.221 40.000 0.00 0.00 0.00 2.43
137 138 4.874966 CCATGACAAACCTGCAAAAGAAAA 59.125 37.500 0.00 0.00 0.00 2.29
138 139 4.081198 ACCATGACAAACCTGCAAAAGAAA 60.081 37.500 0.00 0.00 0.00 2.52
139 140 3.450457 ACCATGACAAACCTGCAAAAGAA 59.550 39.130 0.00 0.00 0.00 2.52
140 141 3.030291 ACCATGACAAACCTGCAAAAGA 58.970 40.909 0.00 0.00 0.00 2.52
141 142 3.181477 TGACCATGACAAACCTGCAAAAG 60.181 43.478 0.00 0.00 0.00 2.27
142 143 2.762887 TGACCATGACAAACCTGCAAAA 59.237 40.909 0.00 0.00 0.00 2.44
143 144 2.100584 GTGACCATGACAAACCTGCAAA 59.899 45.455 0.00 0.00 0.00 3.68
144 145 1.680735 GTGACCATGACAAACCTGCAA 59.319 47.619 0.00 0.00 0.00 4.08
145 146 1.317613 GTGACCATGACAAACCTGCA 58.682 50.000 0.00 0.00 0.00 4.41
146 147 0.238289 CGTGACCATGACAAACCTGC 59.762 55.000 0.00 0.00 0.00 4.85
147 148 1.593196 ACGTGACCATGACAAACCTG 58.407 50.000 0.00 0.00 0.00 4.00
148 149 1.946768 CAACGTGACCATGACAAACCT 59.053 47.619 0.00 0.00 0.00 3.50
149 150 1.673920 ACAACGTGACCATGACAAACC 59.326 47.619 0.00 0.00 0.00 3.27
150 151 2.715268 CACAACGTGACCATGACAAAC 58.285 47.619 0.00 0.00 35.23 2.93
151 152 1.064803 GCACAACGTGACCATGACAAA 59.935 47.619 0.00 0.00 35.23 2.83
152 153 0.660488 GCACAACGTGACCATGACAA 59.340 50.000 0.00 0.00 35.23 3.18
153 154 0.179059 AGCACAACGTGACCATGACA 60.179 50.000 0.00 0.00 35.23 3.58
154 155 0.512952 GAGCACAACGTGACCATGAC 59.487 55.000 0.00 0.00 35.23 3.06
155 156 0.602638 GGAGCACAACGTGACCATGA 60.603 55.000 0.00 0.00 35.23 3.07
156 157 0.884259 TGGAGCACAACGTGACCATG 60.884 55.000 0.00 0.00 36.93 3.66
157 158 0.603707 CTGGAGCACAACGTGACCAT 60.604 55.000 11.71 0.00 39.30 3.55
158 159 1.227527 CTGGAGCACAACGTGACCA 60.228 57.895 11.09 11.09 38.41 4.02
159 160 0.946221 CTCTGGAGCACAACGTGACC 60.946 60.000 0.00 1.56 35.23 4.02
160 161 2.522060 CTCTGGAGCACAACGTGAC 58.478 57.895 0.00 0.00 35.23 3.67
171 172 3.444703 AGCTACGTTATTGCTCTGGAG 57.555 47.619 0.00 0.00 33.81 3.86
172 173 5.334646 CGTATAGCTACGTTATTGCTCTGGA 60.335 44.000 0.00 0.00 44.49 3.86
173 174 4.852104 CGTATAGCTACGTTATTGCTCTGG 59.148 45.833 0.00 0.00 44.49 3.86
174 175 5.976865 CGTATAGCTACGTTATTGCTCTG 57.023 43.478 0.00 0.00 44.49 3.35
186 187 2.604132 GCGTCCCTCAACGTATAGCTAC 60.604 54.545 0.00 0.00 44.38 3.58
187 188 1.605710 GCGTCCCTCAACGTATAGCTA 59.394 52.381 0.00 0.00 44.38 3.32
188 189 0.384669 GCGTCCCTCAACGTATAGCT 59.615 55.000 0.00 0.00 44.38 3.32
189 190 0.933509 CGCGTCCCTCAACGTATAGC 60.934 60.000 0.00 0.00 44.38 2.97
190 191 0.379669 ACGCGTCCCTCAACGTATAG 59.620 55.000 5.58 0.00 44.38 1.31
191 192 0.099259 CACGCGTCCCTCAACGTATA 59.901 55.000 9.86 0.00 44.38 1.47
192 193 1.153901 CACGCGTCCCTCAACGTAT 60.154 57.895 9.86 0.00 44.38 3.06
193 194 2.191354 CTCACGCGTCCCTCAACGTA 62.191 60.000 9.86 0.00 44.38 3.57
194 195 3.553437 CTCACGCGTCCCTCAACGT 62.553 63.158 9.86 0.00 44.38 3.99
195 196 2.543687 ATCTCACGCGTCCCTCAACG 62.544 60.000 9.86 0.00 45.31 4.10
196 197 0.389948 AATCTCACGCGTCCCTCAAC 60.390 55.000 9.86 0.00 0.00 3.18
197 198 0.320374 AAATCTCACGCGTCCCTCAA 59.680 50.000 9.86 0.00 0.00 3.02
198 199 0.389817 CAAATCTCACGCGTCCCTCA 60.390 55.000 9.86 0.00 0.00 3.86
199 200 0.389948 ACAAATCTCACGCGTCCCTC 60.390 55.000 9.86 0.00 0.00 4.30
200 201 0.670546 CACAAATCTCACGCGTCCCT 60.671 55.000 9.86 0.00 0.00 4.20
201 202 0.949105 ACACAAATCTCACGCGTCCC 60.949 55.000 9.86 0.00 0.00 4.46
202 203 0.865769 AACACAAATCTCACGCGTCC 59.134 50.000 9.86 0.00 0.00 4.79
203 204 2.663279 AAACACAAATCTCACGCGTC 57.337 45.000 9.86 0.00 0.00 5.19
204 205 3.414549 AAAAACACAAATCTCACGCGT 57.585 38.095 5.58 5.58 0.00 6.01
222 223 7.001674 TGAGTTTTAGCCAGATGGAGTAAAAA 58.998 34.615 15.64 8.22 37.12 1.94
223 224 6.539173 TGAGTTTTAGCCAGATGGAGTAAAA 58.461 36.000 2.18 8.85 35.01 1.52
224 225 6.121776 TGAGTTTTAGCCAGATGGAGTAAA 57.878 37.500 2.18 3.21 37.39 2.01
225 226 5.755409 TGAGTTTTAGCCAGATGGAGTAA 57.245 39.130 2.18 0.00 37.39 2.24
226 227 5.755409 TTGAGTTTTAGCCAGATGGAGTA 57.245 39.130 2.18 0.00 37.39 2.59
227 228 4.640771 TTGAGTTTTAGCCAGATGGAGT 57.359 40.909 2.18 0.00 37.39 3.85
228 229 4.397417 CCTTTGAGTTTTAGCCAGATGGAG 59.603 45.833 2.18 0.00 37.39 3.86
229 230 4.335416 CCTTTGAGTTTTAGCCAGATGGA 58.665 43.478 2.18 0.00 37.39 3.41
230 231 3.119352 GCCTTTGAGTTTTAGCCAGATGG 60.119 47.826 0.00 0.00 38.53 3.51
231 232 3.760684 AGCCTTTGAGTTTTAGCCAGATG 59.239 43.478 0.00 0.00 0.00 2.90
232 233 4.013050 GAGCCTTTGAGTTTTAGCCAGAT 58.987 43.478 0.00 0.00 0.00 2.90
233 234 3.073062 AGAGCCTTTGAGTTTTAGCCAGA 59.927 43.478 0.00 0.00 0.00 3.86
234 235 3.416156 AGAGCCTTTGAGTTTTAGCCAG 58.584 45.455 0.00 0.00 0.00 4.85
235 236 3.073062 AGAGAGCCTTTGAGTTTTAGCCA 59.927 43.478 0.00 0.00 0.00 4.75
236 237 3.680490 AGAGAGCCTTTGAGTTTTAGCC 58.320 45.455 0.00 0.00 0.00 3.93
237 238 4.757149 TGAAGAGAGCCTTTGAGTTTTAGC 59.243 41.667 0.00 0.00 34.68 3.09
240 241 6.721704 AAATGAAGAGAGCCTTTGAGTTTT 57.278 33.333 0.00 0.00 34.68 2.43
280 282 4.395854 ACAATCTGCATAGCAAATCGTCAA 59.604 37.500 0.00 0.00 38.41 3.18
306 308 1.122019 AGACCAGAAGAAGCCCACGT 61.122 55.000 0.00 0.00 0.00 4.49
307 309 0.895530 TAGACCAGAAGAAGCCCACG 59.104 55.000 0.00 0.00 0.00 4.94
309 311 2.024176 TGTAGACCAGAAGAAGCCCA 57.976 50.000 0.00 0.00 0.00 5.36
313 315 8.879342 AAATTATCGATGTAGACCAGAAGAAG 57.121 34.615 8.54 0.00 0.00 2.85
314 316 9.314321 GAAAATTATCGATGTAGACCAGAAGAA 57.686 33.333 8.54 0.00 0.00 2.52
333 335 6.946165 TGTAAAAGCAACGTCGAGAAAATTA 58.054 32.000 0.00 0.00 0.00 1.40
340 342 2.560896 GCTTGTAAAAGCAACGTCGAG 58.439 47.619 13.00 0.00 44.85 4.04
387 389 0.318699 TTTGTGCGTCTCCGTCTCAG 60.319 55.000 0.00 0.00 36.15 3.35
389 391 0.596600 TGTTTGTGCGTCTCCGTCTC 60.597 55.000 0.00 0.00 36.15 3.36
390 392 0.597637 CTGTTTGTGCGTCTCCGTCT 60.598 55.000 0.00 0.00 36.15 4.18
430 432 3.626680 CTGCATCCACCGACGACGT 62.627 63.158 0.00 0.00 37.88 4.34
482 485 4.900652 TCCGGTAATACTAAATAGCACCCA 59.099 41.667 0.00 0.00 0.00 4.51
511 822 9.543783 AATAACACGCTTTTGGGTAAAATTTTA 57.456 25.926 6.54 6.54 44.11 1.52
512 823 8.439993 AATAACACGCTTTTGGGTAAAATTTT 57.560 26.923 8.75 8.75 44.11 1.82
521 832 7.121272 CGTATACTAAATAACACGCTTTTGGG 58.879 38.462 0.56 0.00 38.45 4.12
528 839 4.301628 AGGCCGTATACTAAATAACACGC 58.698 43.478 0.00 0.00 0.00 5.34
529 840 6.642917 CAAAGGCCGTATACTAAATAACACG 58.357 40.000 0.00 0.00 0.00 4.49
717 1038 8.973378 TGAATTTTATTCGTGTCCAAATTCAAC 58.027 29.630 13.36 0.00 44.76 3.18
729 1050 8.301364 CGGTTTTCGTAATGAATTTTATTCGTG 58.699 33.333 0.00 0.00 36.22 4.35
1014 1353 0.324943 CGAGGGTGATGGTGACCTTT 59.675 55.000 2.11 0.00 32.42 3.11
1077 1416 1.079127 AGGAATCCCACGAGCGTTG 60.079 57.895 0.00 0.00 33.88 4.10
1078 1417 1.218316 GAGGAATCCCACGAGCGTT 59.782 57.895 0.00 0.00 33.88 4.84
1114 1453 1.503542 GGCACAGCCGAATCACAAG 59.496 57.895 0.00 0.00 39.62 3.16
1115 1454 3.667087 GGCACAGCCGAATCACAA 58.333 55.556 0.00 0.00 39.62 3.33
1134 1473 0.820074 ATCAACCAAACCGGCGACAA 60.820 50.000 9.30 0.00 39.03 3.18
1135 1474 0.820074 AATCAACCAAACCGGCGACA 60.820 50.000 9.30 0.00 39.03 4.35
1229 1568 3.676049 CGCAGCTATGACTACTGGAAACA 60.676 47.826 0.00 0.00 39.59 2.83
1259 1598 0.389296 TGTATCCACCACTTGACGCG 60.389 55.000 3.53 3.53 0.00 6.01
1265 1604 2.747446 GCGAACAATGTATCCACCACTT 59.253 45.455 0.00 0.00 0.00 3.16
1284 1623 3.019564 AGGGGAGATGAAAATTCAAGCG 58.980 45.455 0.00 0.00 41.13 4.68
1349 1700 7.437713 ACTTTACTCATCCCTGATCAATACA 57.562 36.000 0.00 0.00 0.00 2.29
1358 1709 5.068234 TCACGTAACTTTACTCATCCCTG 57.932 43.478 0.00 0.00 0.00 4.45
1469 1821 4.494484 TGTCTCTAATCGTGAACCATGTG 58.506 43.478 0.00 0.00 0.00 3.21
1533 1888 2.578940 CCCAATACAGTGGTTTCCCCTA 59.421 50.000 0.00 0.00 36.90 3.53
1586 1941 1.474077 GACAACAGGGCATGACCAATC 59.526 52.381 22.78 5.56 42.05 2.67
1588 1943 0.539438 GGACAACAGGGCATGACCAA 60.539 55.000 22.78 0.00 42.05 3.67
1589 1944 1.074775 GGACAACAGGGCATGACCA 59.925 57.895 22.78 0.00 42.05 4.02
1668 2027 1.539496 GGTTAACACCGACACAGCTCA 60.539 52.381 8.10 0.00 31.60 4.26
1766 2130 4.466370 TGGAATGAAGTGGTAGACTGGTAG 59.534 45.833 0.00 0.00 34.02 3.18
1767 2131 4.422057 TGGAATGAAGTGGTAGACTGGTA 58.578 43.478 0.00 0.00 34.02 3.25
1768 2132 3.248024 TGGAATGAAGTGGTAGACTGGT 58.752 45.455 0.00 0.00 34.02 4.00
1769 2133 3.981071 TGGAATGAAGTGGTAGACTGG 57.019 47.619 0.00 0.00 34.02 4.00
2103 2629 1.452145 CTAGCCTCTCTCGGACAGGC 61.452 65.000 10.72 10.72 45.30 4.85
2119 2645 6.994496 TCAGAATCAGCCACATTATTTCCTAG 59.006 38.462 0.00 0.00 0.00 3.02
2157 2683 9.884465 CAAATATACCTTTTATTACTCTGCTGC 57.116 33.333 0.00 0.00 0.00 5.25
2243 2769 3.266636 TGCAAGGGTCATTGTGTATACG 58.733 45.455 0.00 0.00 32.56 3.06
2285 2811 2.756760 CCACAAAGGGATTCACTCCATG 59.243 50.000 0.00 0.00 46.98 3.66
2387 2922 5.878332 TCACAAGTGCACATATAAAGTGG 57.122 39.130 21.04 0.00 37.46 4.00
2400 2935 0.960861 GGGCCCTACTTCACAAGTGC 60.961 60.000 17.04 0.00 42.84 4.40
2416 2952 0.394899 AGCTAATGAACTGGCAGGGC 60.395 55.000 20.34 10.60 0.00 5.19
2464 3000 0.667993 CAAAACATGCAGGGACACGT 59.332 50.000 2.31 0.00 0.00 4.49
2466 3002 2.888834 AACAAAACATGCAGGGACAC 57.111 45.000 2.31 0.00 0.00 3.67
2533 3069 9.608617 GTACAAAGGTAGCTAAAATTGAAGAAC 57.391 33.333 16.28 8.08 0.00 3.01
2536 3072 8.999431 TCTGTACAAAGGTAGCTAAAATTGAAG 58.001 33.333 16.28 11.62 0.00 3.02
2853 3389 6.535508 ACAGCTCCGTATTGAAATCTTAGAAC 59.464 38.462 0.00 0.00 0.00 3.01
2975 3511 1.532868 CTTCTGTGTCAAGCCTTTCCG 59.467 52.381 0.00 0.00 0.00 4.30
3076 3612 0.622665 CTGGATCACCCCTTCTTGCT 59.377 55.000 0.00 0.00 34.81 3.91
3100 3636 5.389520 TCTCCCTCATCATAACTAGACCTG 58.610 45.833 0.00 0.00 0.00 4.00
3134 3670 3.576118 CTCGAACCATATCCAGATCCTGT 59.424 47.826 0.00 0.00 0.00 4.00
3216 3752 2.880443 ACTTGAACAACCCATCTGCAT 58.120 42.857 0.00 0.00 0.00 3.96
3273 3809 5.365619 GGGACGTATACCTCAAACAATCAT 58.634 41.667 0.00 0.00 0.00 2.45
3374 3910 0.755686 GGAGACATGCCTCTCCGAAT 59.244 55.000 14.70 0.00 45.54 3.34
3394 3930 2.545952 GCCTCTTCGAGCATTTATCGGA 60.546 50.000 0.00 0.00 40.54 4.55
3404 3940 0.529555 GGAGACATGCCTCTTCGAGC 60.530 60.000 9.04 0.00 33.79 5.03
3427 3963 1.140804 GCCTCTTCGAGCACCTCTC 59.859 63.158 0.00 0.00 38.47 3.20
3431 3967 1.078848 ACATGCCTCTTCGAGCACC 60.079 57.895 0.00 0.00 42.84 5.01
3534 4070 1.741028 TGTTCTTGGGGGAGACATGA 58.259 50.000 0.00 0.00 0.00 3.07
3685 4221 5.251932 TCCATTAGTTTGTTGTCCCCTATCA 59.748 40.000 0.00 0.00 0.00 2.15
3691 4227 5.242838 TGTGATTCCATTAGTTTGTTGTCCC 59.757 40.000 0.00 0.00 0.00 4.46
3840 4376 1.750193 AACAACACACACTGTCCCAG 58.250 50.000 0.00 0.00 37.52 4.45
3850 4386 5.243426 ACATTGTAGGACAAACAACACAC 57.757 39.130 0.00 0.00 41.96 3.82
3852 4388 5.646606 ACAACATTGTAGGACAAACAACAC 58.353 37.500 0.00 0.00 41.96 3.32
3885 4427 7.538575 AGTTCCCTTTCAAATCATAATTGACG 58.461 34.615 0.00 0.00 36.57 4.35
3914 4457 9.261180 CAGAGATAGTTTGTAACAAGTTCAGAA 57.739 33.333 0.00 0.00 0.00 3.02
3916 4459 7.360438 GGCAGAGATAGTTTGTAACAAGTTCAG 60.360 40.741 0.00 0.00 0.00 3.02
4003 4546 7.458397 ACTTTAGAATGTCAACCCATCTGTAA 58.542 34.615 0.00 0.00 0.00 2.41
4009 4552 6.068010 TGTCAACTTTAGAATGTCAACCCAT 58.932 36.000 0.00 0.00 0.00 4.00
4010 4553 5.441500 TGTCAACTTTAGAATGTCAACCCA 58.558 37.500 0.00 0.00 0.00 4.51
4014 4557 7.581213 ACCAATGTCAACTTTAGAATGTCAA 57.419 32.000 0.00 0.00 0.00 3.18
4094 4660 4.023707 AGAGCAACGTGAAGAGAAAATTGG 60.024 41.667 0.00 0.00 0.00 3.16
4097 4663 4.023707 CCAAGAGCAACGTGAAGAGAAAAT 60.024 41.667 0.00 0.00 0.00 1.82
4109 4675 0.517316 GCCTGTAACCAAGAGCAACG 59.483 55.000 0.00 0.00 0.00 4.10
4115 4681 2.637872 AGCTACAAGCCTGTAACCAAGA 59.362 45.455 0.00 0.00 43.77 3.02
4140 4706 4.751767 ATGGGCAAAGTGAACAGAAAAA 57.248 36.364 0.00 0.00 0.00 1.94
4141 4707 4.892934 ACTATGGGCAAAGTGAACAGAAAA 59.107 37.500 0.00 0.00 0.00 2.29
4191 4757 4.341235 ACTCGCTATTGGTCAGCATAACTA 59.659 41.667 0.00 0.00 39.04 2.24
4231 4797 2.076100 TGCATAACCAGAAACTCGCTG 58.924 47.619 0.00 0.00 0.00 5.18
4254 4820 5.355071 TGGAGCAAGATCACATAACACAATC 59.645 40.000 0.00 0.00 0.00 2.67
4270 4836 8.822652 AACAATTTTAGAAAATCTGGAGCAAG 57.177 30.769 0.86 0.00 37.62 4.01
4289 4855 5.518848 TCTGCAAATCACACAGAACAATT 57.481 34.783 0.00 0.00 37.49 2.32
4455 5023 9.574577 AGATACCCATTATCCACAGGAAATATA 57.425 33.333 0.00 0.00 37.88 0.86
4532 5105 6.592607 GGGCATAAATTCATAATTCCATGCAG 59.407 38.462 21.22 0.00 43.69 4.41
4541 5114 4.044065 TCCTCGGGGGCATAAATTCATAAT 59.956 41.667 0.00 0.00 34.39 1.28
4623 5202 8.310382 TGAAACTGAAAGAGAAGAGATAAGAGG 58.690 37.037 0.00 0.00 37.43 3.69
4636 5215 6.748333 TGCATAGGAATGAAACTGAAAGAG 57.252 37.500 0.00 0.00 34.35 2.85
4644 5223 5.591877 AGAGGAACATGCATAGGAATGAAAC 59.408 40.000 1.43 0.00 33.88 2.78
4735 5339 3.244665 ACTGACAAGCACATTCTGGATCA 60.245 43.478 0.00 0.00 0.00 2.92
4749 5353 7.551585 AGACTATACTTGAATGGACTGACAAG 58.448 38.462 0.00 0.00 43.30 3.16
4751 5355 7.323420 CAAGACTATACTTGAATGGACTGACA 58.677 38.462 0.00 0.00 46.85 3.58
4771 5380 5.580297 GTCTGAACTCTCATGGATTCAAGAC 59.420 44.000 0.00 4.99 31.00 3.01
5033 5649 6.849811 GCAACTCATGTCTATCATTTCAATCG 59.150 38.462 0.00 0.00 34.09 3.34
5126 5744 7.885297 AGAAGCATGCTAAAGAAATTACAACA 58.115 30.769 23.00 0.00 0.00 3.33
5154 5772 3.949754 ACTCCATTATGCATGTCCAAGTG 59.050 43.478 10.16 0.00 0.00 3.16
5160 5778 6.992715 AGGTAAGTTACTCCATTATGCATGTC 59.007 38.462 10.16 0.00 0.00 3.06
5176 5794 8.362464 TCTTGCTAGATTCTGAAGGTAAGTTA 57.638 34.615 0.00 0.00 0.00 2.24
5236 5953 7.119262 GCCTAAATTCTACAAGACTACAAAGCA 59.881 37.037 0.00 0.00 0.00 3.91
5268 5985 5.061179 GCCACTCTAGGTCAAAACTACAAA 58.939 41.667 0.00 0.00 0.00 2.83
5282 5999 2.768253 TCACAATGGTGCCACTCTAG 57.232 50.000 0.00 0.00 44.87 2.43
5337 6054 2.279935 TGTTTTCCATAAGGTGCCGT 57.720 45.000 0.00 0.00 35.89 5.68
5348 6065 2.690497 TCATCTTTGCCGTTGTTTTCCA 59.310 40.909 0.00 0.00 0.00 3.53
5647 6370 5.191426 CAGAAAGTCCAGATTGATGATGGT 58.809 41.667 0.00 0.00 35.51 3.55
5741 6464 4.901197 TCCTCCATGCAAAACACTAGTA 57.099 40.909 0.00 0.00 0.00 1.82
5744 6467 4.098914 ACTTCCTCCATGCAAAACACTA 57.901 40.909 0.00 0.00 0.00 2.74
5748 6471 2.159517 CGCTACTTCCTCCATGCAAAAC 60.160 50.000 0.00 0.00 0.00 2.43
5751 6474 0.107703 CCGCTACTTCCTCCATGCAA 60.108 55.000 0.00 0.00 0.00 4.08
5769 6492 7.042725 GGAGCAGTCAAACTTTAAAAACAATCC 60.043 37.037 0.00 0.00 0.00 3.01
5780 6503 4.347000 TGTAGGTAGGAGCAGTCAAACTTT 59.653 41.667 0.00 0.00 0.00 2.66
5781 6504 3.901844 TGTAGGTAGGAGCAGTCAAACTT 59.098 43.478 0.00 0.00 0.00 2.66
5847 6571 2.432444 GTACTGGTATGCAGGCAACAA 58.568 47.619 0.00 0.00 41.41 2.83
5857 6581 3.627395 TGAAAGCTGGGTACTGGTATG 57.373 47.619 0.00 0.00 0.00 2.39
5870 6597 3.706086 AGAACAACACCCAATTGAAAGCT 59.294 39.130 7.12 0.00 0.00 3.74
5872 6599 5.659463 TGAAGAACAACACCCAATTGAAAG 58.341 37.500 7.12 0.00 0.00 2.62
5873 6600 5.659463 CTGAAGAACAACACCCAATTGAAA 58.341 37.500 7.12 0.00 0.00 2.69
5876 6603 3.181477 TGCTGAAGAACAACACCCAATTG 60.181 43.478 0.00 0.00 0.00 2.32
5877 6604 3.030291 TGCTGAAGAACAACACCCAATT 58.970 40.909 0.00 0.00 0.00 2.32
5878 6605 2.665165 TGCTGAAGAACAACACCCAAT 58.335 42.857 0.00 0.00 0.00 3.16
5879 6606 2.136298 TGCTGAAGAACAACACCCAA 57.864 45.000 0.00 0.00 0.00 4.12
5880 6607 2.136298 TTGCTGAAGAACAACACCCA 57.864 45.000 0.00 0.00 0.00 4.51
5881 6608 2.362077 ACATTGCTGAAGAACAACACCC 59.638 45.455 0.00 0.00 0.00 4.61
5882 6609 3.316308 AGACATTGCTGAAGAACAACACC 59.684 43.478 0.00 0.00 0.00 4.16
5894 6622 1.364626 GAGCGTCCCAGACATTGCTG 61.365 60.000 1.17 0.00 29.69 4.41
5896 6624 0.175760 TAGAGCGTCCCAGACATTGC 59.824 55.000 0.00 0.00 32.09 3.56
5898 6626 1.751924 GAGTAGAGCGTCCCAGACATT 59.248 52.381 0.00 0.00 32.09 2.71
5903 6631 2.039818 TACAGAGTAGAGCGTCCCAG 57.960 55.000 0.00 0.00 0.00 4.45
5920 6648 2.973694 TCTAACAGACGGCCCAATAC 57.026 50.000 0.00 0.00 0.00 1.89
5923 6651 0.323629 CCTTCTAACAGACGGCCCAA 59.676 55.000 0.00 0.00 26.29 4.12
5924 6652 0.543410 TCCTTCTAACAGACGGCCCA 60.543 55.000 0.00 0.00 33.97 5.36
5925 6653 0.831307 ATCCTTCTAACAGACGGCCC 59.169 55.000 0.00 0.00 33.97 5.80
5927 6655 3.243468 GGTCTATCCTTCTAACAGACGGC 60.243 52.174 0.00 0.00 37.17 5.68
5928 6656 3.952323 TGGTCTATCCTTCTAACAGACGG 59.048 47.826 0.00 0.00 37.17 4.79
5929 6657 4.498345 GCTGGTCTATCCTTCTAACAGACG 60.498 50.000 0.00 0.00 37.17 4.18
5930 6658 4.498345 CGCTGGTCTATCCTTCTAACAGAC 60.498 50.000 0.00 0.00 35.87 3.51
5931 6659 3.632604 CGCTGGTCTATCCTTCTAACAGA 59.367 47.826 0.00 0.00 37.07 3.41
5934 6662 4.142227 TGAACGCTGGTCTATCCTTCTAAC 60.142 45.833 0.00 0.00 37.07 2.34
5935 6663 4.021229 TGAACGCTGGTCTATCCTTCTAA 58.979 43.478 0.00 0.00 37.07 2.10
5936 6664 3.628008 TGAACGCTGGTCTATCCTTCTA 58.372 45.455 0.00 0.00 37.07 2.10
5937 6665 2.457598 TGAACGCTGGTCTATCCTTCT 58.542 47.619 0.00 0.00 37.07 2.85
5938 6666 2.930682 GTTGAACGCTGGTCTATCCTTC 59.069 50.000 0.00 0.00 37.07 3.46
5939 6667 2.301870 TGTTGAACGCTGGTCTATCCTT 59.698 45.455 0.00 0.00 37.07 3.36
5948 6676 3.770263 ATTCATCATGTTGAACGCTGG 57.230 42.857 18.98 0.00 38.37 4.85
5956 6684 7.281774 AGTTCCTGCTAGTAATTCATCATGTTG 59.718 37.037 0.00 0.00 0.00 3.33
5962 6690 5.675538 ACCAGTTCCTGCTAGTAATTCATC 58.324 41.667 0.00 0.00 0.00 2.92
6070 6798 2.032054 CCAATAGTTCGCGTCATTGCAT 59.968 45.455 5.77 0.00 34.15 3.96
6098 6826 3.196254 AGGCCAAACAATCATGTCCATTC 59.804 43.478 5.01 0.00 39.40 2.67
6106 6834 5.818857 GCAAATGATAAGGCCAAACAATCAT 59.181 36.000 5.01 8.85 38.58 2.45
6110 6838 4.888326 AGCAAATGATAAGGCCAAACAA 57.112 36.364 5.01 0.00 0.00 2.83
6121 6849 6.883756 TGTGACAGTTTGGATAGCAAATGATA 59.116 34.615 0.00 0.00 0.00 2.15
6126 6854 5.534278 TCATTGTGACAGTTTGGATAGCAAA 59.466 36.000 0.00 0.00 0.00 3.68
6150 6888 4.280677 TGATTTTTCCGATTCAGTGCCTTT 59.719 37.500 0.00 0.00 0.00 3.11
6158 6896 3.670625 ACGGTCTGATTTTTCCGATTCA 58.329 40.909 10.18 0.00 44.86 2.57
6165 6903 2.487762 TGCATGGACGGTCTGATTTTTC 59.512 45.455 8.23 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.