Multiple sequence alignment - TraesCS2B01G346600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G346600 chr2B 100.000 3905 0 0 1 3905 493431863 493427959 0.000000e+00 7212.0
1 TraesCS2B01G346600 chr2B 81.046 153 25 4 1154 1304 97491673 97491523 6.850000e-23 119.0
2 TraesCS2B01G346600 chr2D 92.948 1489 65 16 736 2220 420817876 420816424 0.000000e+00 2132.0
3 TraesCS2B01G346600 chr2D 90.812 1600 113 20 2321 3889 420816381 420814785 0.000000e+00 2109.0
4 TraesCS2B01G346600 chr2D 81.884 138 23 2 1154 1290 62187868 62188004 8.870000e-22 115.0
5 TraesCS2B01G346600 chr2A 89.651 1604 129 17 2321 3889 566618715 566617114 0.000000e+00 2008.0
6 TraesCS2B01G346600 chr2A 95.363 1143 42 4 922 2062 566620101 566618968 0.000000e+00 1807.0
7 TraesCS2B01G346600 chr2A 90.580 276 17 5 2066 2338 566618994 566618725 1.330000e-94 357.0
8 TraesCS2B01G346600 chr2A 90.868 219 19 1 633 851 566620494 566620277 3.820000e-75 292.0
9 TraesCS2B01G346600 chr2A 83.895 267 27 5 12 278 566621021 566620771 1.400000e-59 241.0
10 TraesCS2B01G346600 chr2A 84.153 183 25 4 281 463 566620736 566620558 1.440000e-39 174.0
11 TraesCS2B01G346600 chr2A 82.353 153 23 4 1154 1304 62488667 62488817 3.170000e-26 130.0
12 TraesCS2B01G346600 chr1B 84.112 107 14 3 3649 3753 17265339 17265234 2.480000e-17 100.0
13 TraesCS2B01G346600 chr1B 84.314 102 13 3 3651 3750 22266071 22266171 3.210000e-16 97.1
14 TraesCS2B01G346600 chr1D 73.896 249 46 15 3468 3701 3468429 3468185 8.990000e-12 82.4
15 TraesCS2B01G346600 chr1D 88.235 68 7 1 3649 3715 3458522 3458455 3.230000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G346600 chr2B 493427959 493431863 3904 True 7212.000000 7212 100.000 1 3905 1 chr2B.!!$R2 3904
1 TraesCS2B01G346600 chr2D 420814785 420817876 3091 True 2120.500000 2132 91.880 736 3889 2 chr2D.!!$R1 3153
2 TraesCS2B01G346600 chr2A 566617114 566621021 3907 True 813.166667 2008 89.085 12 3889 6 chr2A.!!$R1 3877

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
685 717 0.108585 AGTGTGAGCAATGGGTTCGT 59.891 50.0 0.00 0.00 0.00 3.85 F
909 1081 0.388294 AGCTACGGGTTAAGCCGATC 59.612 55.0 43.14 30.49 39.64 3.69 F
1696 1872 0.389948 CCTCGACAACTGCCACTACC 60.390 60.0 0.00 0.00 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1766 1942 0.036765 GATGGCCACCGTGTCAGTAA 60.037 55.0 8.16 0.0 0.00 2.24 R
2718 2934 0.543749 CCCTTTGCTCCTCTTCGGAT 59.456 55.0 0.00 0.0 42.12 4.18 R
3691 3947 0.330604 AGTGGCTCAGTAGTACCGGA 59.669 55.0 9.46 0.0 0.00 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.932200 AGTACATACAGAGAGCAAGCAAAC 59.068 41.667 0.00 0.00 0.00 2.93
61 62 3.198872 GGAGGAGCTTTTATGGACTTCG 58.801 50.000 0.00 0.00 0.00 3.79
68 69 4.335594 AGCTTTTATGGACTTCGGTATTGC 59.664 41.667 0.00 0.00 0.00 3.56
73 74 1.074084 TGGACTTCGGTATTGCCCAAA 59.926 47.619 0.00 0.00 0.00 3.28
74 75 1.743394 GGACTTCGGTATTGCCCAAAG 59.257 52.381 0.76 0.76 34.45 2.77
75 76 2.433436 GACTTCGGTATTGCCCAAAGT 58.567 47.619 6.08 6.08 40.43 2.66
76 77 2.817844 GACTTCGGTATTGCCCAAAGTT 59.182 45.455 7.38 0.00 38.87 2.66
77 78 3.227614 ACTTCGGTATTGCCCAAAGTTT 58.772 40.909 1.79 0.00 36.77 2.66
88 89 3.593834 CAAAGTTTTGGGGCTGCTC 57.406 52.632 0.00 0.00 34.59 4.26
140 141 2.498078 CACCCTAGTCCAGAGGAGAAAC 59.502 54.545 0.00 0.00 35.99 2.78
147 148 0.533032 CCAGAGGAGAAACGGGAGTC 59.467 60.000 0.00 0.00 46.69 3.36
160 161 0.248784 GGGAGTCGAACCGGATTACG 60.249 60.000 9.46 8.26 43.80 3.18
169 170 4.846551 CGGATTACGGTGATGGCA 57.153 55.556 0.00 0.00 39.42 4.92
178 179 4.028490 GTGATGGCACGGGTGGGA 62.028 66.667 0.43 0.00 34.94 4.37
179 180 3.253061 TGATGGCACGGGTGGGAA 61.253 61.111 0.43 0.00 0.00 3.97
180 181 2.438434 GATGGCACGGGTGGGAAG 60.438 66.667 0.43 0.00 0.00 3.46
181 182 3.995506 GATGGCACGGGTGGGAAGG 62.996 68.421 0.43 0.00 0.00 3.46
184 185 4.717313 GCACGGGTGGGAAGGGAC 62.717 72.222 0.43 0.00 0.00 4.46
185 186 4.388499 CACGGGTGGGAAGGGACG 62.388 72.222 0.00 0.00 0.00 4.79
186 187 4.948080 ACGGGTGGGAAGGGACGT 62.948 66.667 0.00 0.00 0.00 4.34
187 188 3.633116 CGGGTGGGAAGGGACGTT 61.633 66.667 0.00 0.00 0.00 3.99
188 189 2.841317 GGGTGGGAAGGGACGTTT 59.159 61.111 0.00 0.00 0.00 3.60
189 190 1.829523 CGGGTGGGAAGGGACGTTTA 61.830 60.000 0.00 0.00 0.00 2.01
190 191 0.321919 GGGTGGGAAGGGACGTTTAC 60.322 60.000 0.00 0.00 0.00 2.01
195 196 0.890683 GGAAGGGACGTTTACGAGGA 59.109 55.000 9.53 0.00 43.02 3.71
197 198 2.332104 GAAGGGACGTTTACGAGGAAC 58.668 52.381 9.53 0.00 43.02 3.62
215 216 1.150081 CTGGAGATGGTGATGGGCC 59.850 63.158 0.00 0.00 0.00 5.80
217 218 2.746375 GGAGATGGTGATGGGCCGT 61.746 63.158 0.00 0.00 0.00 5.68
242 243 0.318699 GGGGAAGACAAAGCGTTTGC 60.319 55.000 9.44 4.54 44.39 3.68
276 277 6.767902 TGCCCAACAAGCATTTATAACAAAAA 59.232 30.769 0.00 0.00 34.69 1.94
277 278 7.041508 TGCCCAACAAGCATTTATAACAAAAAG 60.042 33.333 0.00 0.00 34.69 2.27
279 280 7.443879 CCCAACAAGCATTTATAACAAAAAGGT 59.556 33.333 0.00 0.00 0.00 3.50
297 329 9.436957 CAAAAAGGTGAGCTATAGTTTAGAGAA 57.563 33.333 0.84 0.00 0.00 2.87
302 334 9.825109 AGGTGAGCTATAGTTTAGAGAAAATTC 57.175 33.333 0.84 0.00 0.00 2.17
344 376 4.177546 ACCCCACTACTTACATTTACCCA 58.822 43.478 0.00 0.00 0.00 4.51
379 411 6.185511 ACCTACTAAGTTTTGCCCCTATTTC 58.814 40.000 0.00 0.00 0.00 2.17
380 412 6.184789 CCTACTAAGTTTTGCCCCTATTTCA 58.815 40.000 0.00 0.00 0.00 2.69
383 415 9.403583 CTACTAAGTTTTGCCCCTATTTCATTA 57.596 33.333 0.00 0.00 0.00 1.90
390 422 7.537596 TTTGCCCCTATTTCATTATATGGTG 57.462 36.000 0.00 0.00 0.00 4.17
393 425 7.760607 TGCCCCTATTTCATTATATGGTGTTA 58.239 34.615 0.00 0.00 0.00 2.41
412 444 9.678981 TGGTGTTATTATAGAAATACCTAGGGT 57.321 33.333 14.81 1.17 37.65 4.34
417 449 9.812347 TTATTATAGAAATACCTAGGGTCGACA 57.188 33.333 18.91 0.00 37.09 4.35
420 452 5.952347 AGAAATACCTAGGGTCGACATTT 57.048 39.130 18.91 12.20 37.09 2.32
427 459 2.770164 AGGGTCGACATTTCCTTCAG 57.230 50.000 18.91 0.00 0.00 3.02
437 469 4.175962 ACATTTCCTTCAGGTCTTCCCTA 58.824 43.478 0.00 0.00 43.86 3.53
438 470 4.790790 ACATTTCCTTCAGGTCTTCCCTAT 59.209 41.667 0.00 0.00 43.86 2.57
451 483 6.887002 AGGTCTTCCCTATTTTCTAAGCTTTG 59.113 38.462 3.20 1.97 43.87 2.77
463 495 2.191128 AAGCTTTGCGACATTCCTCT 57.809 45.000 0.00 0.00 0.00 3.69
465 497 3.550437 AGCTTTGCGACATTCCTCTAT 57.450 42.857 0.00 0.00 0.00 1.98
467 499 4.626042 AGCTTTGCGACATTCCTCTATAG 58.374 43.478 0.00 0.00 0.00 1.31
468 500 3.185391 GCTTTGCGACATTCCTCTATAGC 59.815 47.826 0.00 0.00 0.00 2.97
469 501 4.371786 CTTTGCGACATTCCTCTATAGCA 58.628 43.478 0.00 0.00 0.00 3.49
470 502 4.607293 TTGCGACATTCCTCTATAGCAT 57.393 40.909 0.00 0.00 33.21 3.79
471 503 4.179926 TGCGACATTCCTCTATAGCATC 57.820 45.455 0.00 0.00 0.00 3.91
472 504 3.056536 TGCGACATTCCTCTATAGCATCC 60.057 47.826 0.00 0.00 0.00 3.51
473 505 3.677424 GCGACATTCCTCTATAGCATCCC 60.677 52.174 0.00 0.00 0.00 3.85
474 506 3.118956 CGACATTCCTCTATAGCATCCCC 60.119 52.174 0.00 0.00 0.00 4.81
475 507 2.834549 ACATTCCTCTATAGCATCCCCG 59.165 50.000 0.00 0.00 0.00 5.73
476 508 2.992847 TTCCTCTATAGCATCCCCGA 57.007 50.000 0.00 0.00 0.00 5.14
477 509 2.516227 TCCTCTATAGCATCCCCGAG 57.484 55.000 0.00 0.00 0.00 4.63
478 510 0.820871 CCTCTATAGCATCCCCGAGC 59.179 60.000 0.00 0.00 0.00 5.03
479 511 1.550327 CTCTATAGCATCCCCGAGCA 58.450 55.000 0.00 0.00 0.00 4.26
480 512 2.106566 CTCTATAGCATCCCCGAGCAT 58.893 52.381 0.00 0.00 0.00 3.79
481 513 2.100584 CTCTATAGCATCCCCGAGCATC 59.899 54.545 0.00 0.00 0.00 3.91
482 514 2.106566 CTATAGCATCCCCGAGCATCT 58.893 52.381 0.00 0.00 0.00 2.90
483 515 0.901124 ATAGCATCCCCGAGCATCTC 59.099 55.000 0.00 0.00 0.00 2.75
484 516 1.188219 TAGCATCCCCGAGCATCTCC 61.188 60.000 0.00 0.00 0.00 3.71
485 517 2.811514 GCATCCCCGAGCATCTCCA 61.812 63.158 0.00 0.00 0.00 3.86
486 518 2.064628 CATCCCCGAGCATCTCCAT 58.935 57.895 0.00 0.00 0.00 3.41
487 519 0.321387 CATCCCCGAGCATCTCCATG 60.321 60.000 0.00 0.00 0.00 3.66
488 520 1.486997 ATCCCCGAGCATCTCCATGG 61.487 60.000 4.97 4.97 0.00 3.66
489 521 2.142761 CCCCGAGCATCTCCATGGA 61.143 63.158 15.27 15.27 0.00 3.41
490 522 1.486997 CCCCGAGCATCTCCATGGAT 61.487 60.000 16.63 0.00 0.00 3.41
491 523 0.399454 CCCGAGCATCTCCATGGATT 59.601 55.000 16.63 2.85 0.00 3.01
492 524 1.202855 CCCGAGCATCTCCATGGATTT 60.203 52.381 16.63 2.44 0.00 2.17
493 525 2.579873 CCGAGCATCTCCATGGATTTT 58.420 47.619 16.63 0.00 0.00 1.82
494 526 2.954318 CCGAGCATCTCCATGGATTTTT 59.046 45.455 16.63 0.00 0.00 1.94
495 527 3.243301 CCGAGCATCTCCATGGATTTTTG 60.243 47.826 16.63 11.40 0.00 2.44
496 528 3.379372 CGAGCATCTCCATGGATTTTTGT 59.621 43.478 16.63 0.00 0.00 2.83
497 529 4.142315 CGAGCATCTCCATGGATTTTTGTT 60.142 41.667 16.63 8.50 0.00 2.83
498 530 5.622914 CGAGCATCTCCATGGATTTTTGTTT 60.623 40.000 16.63 4.04 0.00 2.83
499 531 6.117975 AGCATCTCCATGGATTTTTGTTTT 57.882 33.333 16.63 0.00 0.00 2.43
500 532 5.935789 AGCATCTCCATGGATTTTTGTTTTG 59.064 36.000 16.63 0.00 0.00 2.44
501 533 5.702209 GCATCTCCATGGATTTTTGTTTTGT 59.298 36.000 16.63 0.00 0.00 2.83
502 534 6.205270 GCATCTCCATGGATTTTTGTTTTGTT 59.795 34.615 16.63 0.00 0.00 2.83
503 535 7.255208 GCATCTCCATGGATTTTTGTTTTGTTT 60.255 33.333 16.63 0.00 0.00 2.83
504 536 8.623030 CATCTCCATGGATTTTTGTTTTGTTTT 58.377 29.630 16.63 0.00 0.00 2.43
505 537 7.983307 TCTCCATGGATTTTTGTTTTGTTTTG 58.017 30.769 16.63 0.00 0.00 2.44
506 538 7.609532 TCTCCATGGATTTTTGTTTTGTTTTGT 59.390 29.630 16.63 0.00 0.00 2.83
507 539 8.115490 TCCATGGATTTTTGTTTTGTTTTGTT 57.885 26.923 11.44 0.00 0.00 2.83
508 540 8.579863 TCCATGGATTTTTGTTTTGTTTTGTTT 58.420 25.926 11.44 0.00 0.00 2.83
509 541 9.201127 CCATGGATTTTTGTTTTGTTTTGTTTT 57.799 25.926 5.56 0.00 0.00 2.43
512 544 8.958043 TGGATTTTTGTTTTGTTTTGTTTTTCG 58.042 25.926 0.00 0.00 0.00 3.46
513 545 8.420945 GGATTTTTGTTTTGTTTTGTTTTTCGG 58.579 29.630 0.00 0.00 0.00 4.30
514 546 8.858003 ATTTTTGTTTTGTTTTGTTTTTCGGT 57.142 23.077 0.00 0.00 0.00 4.69
515 547 7.665080 TTTTGTTTTGTTTTGTTTTTCGGTG 57.335 28.000 0.00 0.00 0.00 4.94
516 548 4.773510 TGTTTTGTTTTGTTTTTCGGTGC 58.226 34.783 0.00 0.00 0.00 5.01
517 549 4.511826 TGTTTTGTTTTGTTTTTCGGTGCT 59.488 33.333 0.00 0.00 0.00 4.40
518 550 5.007724 TGTTTTGTTTTGTTTTTCGGTGCTT 59.992 32.000 0.00 0.00 0.00 3.91
519 551 6.202188 TGTTTTGTTTTGTTTTTCGGTGCTTA 59.798 30.769 0.00 0.00 0.00 3.09
520 552 6.969828 TTTGTTTTGTTTTTCGGTGCTTAT 57.030 29.167 0.00 0.00 0.00 1.73
521 553 5.957910 TGTTTTGTTTTTCGGTGCTTATG 57.042 34.783 0.00 0.00 0.00 1.90
522 554 5.411781 TGTTTTGTTTTTCGGTGCTTATGT 58.588 33.333 0.00 0.00 0.00 2.29
523 555 5.869888 TGTTTTGTTTTTCGGTGCTTATGTT 59.130 32.000 0.00 0.00 0.00 2.71
524 556 6.369065 TGTTTTGTTTTTCGGTGCTTATGTTT 59.631 30.769 0.00 0.00 0.00 2.83
525 557 6.969828 TTTGTTTTTCGGTGCTTATGTTTT 57.030 29.167 0.00 0.00 0.00 2.43
526 558 6.576551 TTGTTTTTCGGTGCTTATGTTTTC 57.423 33.333 0.00 0.00 0.00 2.29
527 559 5.651530 TGTTTTTCGGTGCTTATGTTTTCA 58.348 33.333 0.00 0.00 0.00 2.69
528 560 6.100004 TGTTTTTCGGTGCTTATGTTTTCAA 58.900 32.000 0.00 0.00 0.00 2.69
529 561 6.254589 TGTTTTTCGGTGCTTATGTTTTCAAG 59.745 34.615 0.00 0.00 0.00 3.02
530 562 4.497473 TTCGGTGCTTATGTTTTCAAGG 57.503 40.909 0.00 0.00 0.00 3.61
531 563 3.745799 TCGGTGCTTATGTTTTCAAGGA 58.254 40.909 0.00 0.00 0.00 3.36
532 564 3.751175 TCGGTGCTTATGTTTTCAAGGAG 59.249 43.478 0.00 0.00 0.00 3.69
533 565 3.751175 CGGTGCTTATGTTTTCAAGGAGA 59.249 43.478 0.00 0.00 0.00 3.71
534 566 4.215399 CGGTGCTTATGTTTTCAAGGAGAA 59.785 41.667 0.00 0.00 0.00 2.87
535 567 5.106157 CGGTGCTTATGTTTTCAAGGAGAAT 60.106 40.000 0.00 0.00 35.83 2.40
536 568 6.093495 CGGTGCTTATGTTTTCAAGGAGAATA 59.907 38.462 0.00 0.00 35.83 1.75
537 569 7.361713 CGGTGCTTATGTTTTCAAGGAGAATAA 60.362 37.037 0.00 0.00 35.83 1.40
538 570 8.303876 GGTGCTTATGTTTTCAAGGAGAATAAA 58.696 33.333 0.00 0.00 35.83 1.40
539 571 9.860898 GTGCTTATGTTTTCAAGGAGAATAAAT 57.139 29.630 0.00 0.00 35.83 1.40
581 613 7.386573 ACAAAAGCTTAGAAAGTAGAGAAGAGC 59.613 37.037 0.00 0.00 0.00 4.09
586 618 6.573485 GCTTAGAAAGTAGAGAAGAGCCAACT 60.573 42.308 0.00 0.00 0.00 3.16
587 619 5.146010 AGAAAGTAGAGAAGAGCCAACTG 57.854 43.478 0.00 0.00 0.00 3.16
595 627 3.070018 AGAAGAGCCAACTGAAACATCG 58.930 45.455 0.00 0.00 0.00 3.84
597 629 1.160137 GAGCCAACTGAAACATCGCT 58.840 50.000 0.00 0.00 0.00 4.93
598 630 1.129437 GAGCCAACTGAAACATCGCTC 59.871 52.381 0.00 0.00 35.03 5.03
599 631 0.874390 GCCAACTGAAACATCGCTCA 59.126 50.000 0.00 0.00 0.00 4.26
600 632 1.470098 GCCAACTGAAACATCGCTCAT 59.530 47.619 0.00 0.00 0.00 2.90
601 633 2.730090 GCCAACTGAAACATCGCTCATG 60.730 50.000 0.00 0.00 38.64 3.07
602 634 2.159476 CCAACTGAAACATCGCTCATGG 60.159 50.000 0.00 0.00 36.72 3.66
603 635 2.743664 CAACTGAAACATCGCTCATGGA 59.256 45.455 0.00 0.00 36.72 3.41
604 636 3.272574 ACTGAAACATCGCTCATGGAT 57.727 42.857 0.00 0.00 36.72 3.41
605 637 4.406648 ACTGAAACATCGCTCATGGATA 57.593 40.909 0.00 0.00 36.72 2.59
606 638 4.965814 ACTGAAACATCGCTCATGGATAT 58.034 39.130 0.00 0.00 36.72 1.63
607 639 5.371526 ACTGAAACATCGCTCATGGATATT 58.628 37.500 0.00 0.00 36.72 1.28
608 640 5.824624 ACTGAAACATCGCTCATGGATATTT 59.175 36.000 0.00 0.00 36.72 1.40
609 641 6.319658 ACTGAAACATCGCTCATGGATATTTT 59.680 34.615 0.00 0.00 36.72 1.82
610 642 7.498900 ACTGAAACATCGCTCATGGATATTTTA 59.501 33.333 0.00 0.00 36.72 1.52
611 643 8.219546 TGAAACATCGCTCATGGATATTTTAA 57.780 30.769 0.00 0.00 36.72 1.52
612 644 8.128582 TGAAACATCGCTCATGGATATTTTAAC 58.871 33.333 0.00 0.00 36.72 2.01
613 645 7.566760 AACATCGCTCATGGATATTTTAACA 57.433 32.000 0.00 0.00 36.72 2.41
614 646 6.959361 ACATCGCTCATGGATATTTTAACAC 58.041 36.000 0.00 0.00 36.72 3.32
615 647 6.017109 ACATCGCTCATGGATATTTTAACACC 60.017 38.462 0.00 0.00 36.72 4.16
616 648 5.432645 TCGCTCATGGATATTTTAACACCA 58.567 37.500 0.00 0.00 35.09 4.17
617 649 5.295787 TCGCTCATGGATATTTTAACACCAC 59.704 40.000 0.00 0.00 33.38 4.16
618 650 5.065859 CGCTCATGGATATTTTAACACCACA 59.934 40.000 0.00 0.00 33.38 4.17
619 651 6.265577 GCTCATGGATATTTTAACACCACAC 58.734 40.000 0.00 0.00 33.38 3.82
620 652 6.127758 GCTCATGGATATTTTAACACCACACA 60.128 38.462 0.00 0.00 33.38 3.72
621 653 7.576666 GCTCATGGATATTTTAACACCACACAA 60.577 37.037 0.00 0.00 33.38 3.33
622 654 7.598278 TCATGGATATTTTAACACCACACAAC 58.402 34.615 0.00 0.00 33.38 3.32
623 655 6.003234 TGGATATTTTAACACCACACAACG 57.997 37.500 0.00 0.00 0.00 4.10
624 656 5.048643 TGGATATTTTAACACCACACAACGG 60.049 40.000 0.00 0.00 0.00 4.44
625 657 5.181622 GGATATTTTAACACCACACAACGGA 59.818 40.000 0.00 0.00 0.00 4.69
626 658 4.985538 ATTTTAACACCACACAACGGAA 57.014 36.364 0.00 0.00 0.00 4.30
627 659 3.761311 TTTAACACCACACAACGGAAC 57.239 42.857 0.00 0.00 0.00 3.62
674 706 8.732746 TCTTAAATTTAGGGATAAGTGTGAGC 57.267 34.615 7.41 0.00 0.00 4.26
680 712 2.092212 AGGGATAAGTGTGAGCAATGGG 60.092 50.000 0.00 0.00 0.00 4.00
685 717 0.108585 AGTGTGAGCAATGGGTTCGT 59.891 50.000 0.00 0.00 0.00 3.85
694 726 2.500229 CAATGGGTTCGTGTTAGGTGT 58.500 47.619 0.00 0.00 0.00 4.16
702 734 5.163478 GGGTTCGTGTTAGGTGTAGATATGT 60.163 44.000 0.00 0.00 0.00 2.29
711 743 8.464404 TGTTAGGTGTAGATATGTAAGTGTGAC 58.536 37.037 0.00 0.00 0.00 3.67
714 746 8.453238 AGGTGTAGATATGTAAGTGTGACTAG 57.547 38.462 0.00 0.00 0.00 2.57
715 747 8.053963 AGGTGTAGATATGTAAGTGTGACTAGT 58.946 37.037 0.00 0.00 0.00 2.57
723 755 4.521639 TGTAAGTGTGACTAGTGGATTCGT 59.478 41.667 0.00 0.00 0.00 3.85
733 765 3.594603 AGTGGATTCGTGTTAGGAGTG 57.405 47.619 0.00 0.00 0.00 3.51
742 914 7.382759 GGATTCGTGTTAGGAGTGATTTAGATC 59.617 40.741 0.00 0.00 0.00 2.75
747 919 7.923344 CGTGTTAGGAGTGATTTAGATCTTGAT 59.077 37.037 0.00 0.00 33.28 2.57
764 936 3.675348 TGATGCCCCTCAAAGATTCAT 57.325 42.857 0.00 0.00 0.00 2.57
780 952 5.704888 AGATTCATAGACATCGAATCGGAC 58.295 41.667 1.76 0.00 46.21 4.79
783 955 2.750301 TAGACATCGAATCGGACACG 57.250 50.000 1.76 0.00 42.74 4.49
785 957 2.011947 AGACATCGAATCGGACACGTA 58.988 47.619 1.76 0.00 41.85 3.57
790 962 1.266786 CGAATCGGACACGTATCGCC 61.267 60.000 0.00 0.00 40.22 5.54
854 1026 2.728839 CGAACAGTTCTCTTCAGCACTC 59.271 50.000 11.60 0.00 0.00 3.51
856 1028 1.683917 ACAGTTCTCTTCAGCACTCGT 59.316 47.619 0.00 0.00 0.00 4.18
894 1066 2.436646 GGCAGCCGAAGCAAGCTA 60.437 61.111 0.00 0.00 43.56 3.32
895 1067 2.754995 GGCAGCCGAAGCAAGCTAC 61.755 63.158 0.00 0.00 43.56 3.58
896 1068 3.084579 CAGCCGAAGCAAGCTACG 58.915 61.111 0.00 0.00 43.56 3.51
909 1081 0.388294 AGCTACGGGTTAAGCCGATC 59.612 55.000 43.14 30.49 39.64 3.69
913 1085 1.153509 CGGGTTAAGCCGATCGGTT 60.154 57.895 36.45 26.70 38.44 4.44
914 1086 1.426041 CGGGTTAAGCCGATCGGTTG 61.426 60.000 36.45 12.35 38.44 3.77
922 1094 4.143333 CGATCGGTTGACGGGCCT 62.143 66.667 7.38 0.00 44.45 5.19
976 1148 4.864334 CATCCCAGCAGTCGGGCC 62.864 72.222 0.00 0.00 44.11 5.80
999 1171 1.140252 ACGGCTCGTAAATAAGGCCAT 59.860 47.619 5.01 0.00 42.56 4.40
1007 1179 2.477104 AAATAAGGCCATCCAAGGGG 57.523 50.000 5.01 0.00 33.74 4.79
1016 1188 3.393970 TCCAAGGGGAGCAGCTCG 61.394 66.667 16.47 1.79 38.64 5.03
1017 1189 3.710722 CCAAGGGGAGCAGCTCGT 61.711 66.667 16.47 0.38 35.59 4.18
1018 1190 2.348998 CAAGGGGAGCAGCTCGTT 59.651 61.111 16.47 6.88 0.00 3.85
1019 1191 1.743252 CAAGGGGAGCAGCTCGTTC 60.743 63.158 16.47 8.23 0.00 3.95
1020 1192 2.960688 AAGGGGAGCAGCTCGTTCC 61.961 63.158 16.47 16.28 44.09 3.62
1029 1201 1.749638 AGCTCGTTCCCTCGTCGAT 60.750 57.895 0.00 0.00 33.26 3.59
1089 1265 1.064208 CGTACTCATCCCTGTCTGTCG 59.936 57.143 0.00 0.00 0.00 4.35
1523 1699 4.778415 CGTCGACCTCCAGTGCGG 62.778 72.222 10.58 0.00 0.00 5.69
1690 1866 2.280797 TGCACCTCGACAACTGCC 60.281 61.111 0.00 0.00 0.00 4.85
1696 1872 0.389948 CCTCGACAACTGCCACTACC 60.390 60.000 0.00 0.00 0.00 3.18
1766 1942 6.423001 GTCACAAGTAATTCGGTCAGTTACTT 59.577 38.462 4.43 4.43 44.87 2.24
2063 2239 5.592104 TGGATCTCGAGTGTTTTAGCATA 57.408 39.130 13.13 0.00 0.00 3.14
2100 2276 2.544267 ACGAGTGTTTTAGCAGTGCTTC 59.456 45.455 25.23 11.76 40.44 3.86
2249 2427 4.519540 TTCCATTTGCCTACTTTTCTGC 57.480 40.909 0.00 0.00 0.00 4.26
2260 2438 2.508526 ACTTTTCTGCATCACTCACCC 58.491 47.619 0.00 0.00 0.00 4.61
2265 2443 1.278985 TCTGCATCACTCACCCGAAAT 59.721 47.619 0.00 0.00 0.00 2.17
2304 2482 6.428159 TGCACAACACCAAAGTTTAAAAACAT 59.572 30.769 8.21 0.00 41.30 2.71
2318 2496 9.607285 AGTTTAAAAACATGATAGTAAAGTGCG 57.393 29.630 0.00 0.00 41.30 5.34
2319 2497 8.363029 GTTTAAAAACATGATAGTAAAGTGCGC 58.637 33.333 0.00 0.00 38.74 6.09
2320 2498 5.621197 AAAACATGATAGTAAAGTGCGCA 57.379 34.783 5.66 5.66 0.00 6.09
2321 2499 5.818136 AAACATGATAGTAAAGTGCGCAT 57.182 34.783 15.91 0.00 0.00 4.73
2322 2500 5.818136 AACATGATAGTAAAGTGCGCATT 57.182 34.783 15.91 6.43 0.00 3.56
2324 2502 7.496529 AACATGATAGTAAAGTGCGCATTAT 57.503 32.000 15.91 5.05 0.00 1.28
2325 2503 8.601845 AACATGATAGTAAAGTGCGCATTATA 57.398 30.769 15.91 3.91 0.00 0.98
2368 2575 9.490663 CAAAAGTGTACAGTATTAGCTAAATGC 57.509 33.333 10.85 3.89 43.29 3.56
2369 2576 8.786826 AAAGTGTACAGTATTAGCTAAATGCA 57.213 30.769 10.85 0.00 45.94 3.96
2409 2617 8.900781 GGTCAGTAAGTTATACACATAGTGAGA 58.099 37.037 3.88 0.00 38.90 3.27
2420 2628 3.801698 ACATAGTGAGATGTGTGATGGC 58.198 45.455 0.00 0.00 38.64 4.40
2587 2802 6.547141 AGTGTTGATGAAAATCCTTGAGAACA 59.453 34.615 0.00 0.00 0.00 3.18
2662 2877 9.118236 CTTTTTAATTGCACTCTACACTTTAGC 57.882 33.333 0.00 0.00 0.00 3.09
2670 2885 5.107298 GCACTCTACACTTTAGCTCTTTGTG 60.107 44.000 0.00 0.00 35.09 3.33
2718 2934 6.879993 TCTTGTACACAACAGTTTTTAGGTCA 59.120 34.615 0.00 0.00 39.87 4.02
2833 3049 7.888021 TCAATAGAAATCAAGTACCAACCACAT 59.112 33.333 0.00 0.00 0.00 3.21
2837 3053 6.375455 AGAAATCAAGTACCAACCACATGATC 59.625 38.462 0.00 0.00 0.00 2.92
2844 3060 1.399440 CCAACCACATGATCAAGCTCG 59.601 52.381 0.00 0.00 0.00 5.03
2862 3078 2.967357 CTCGCTTGAAAGAGTTTTTCGC 59.033 45.455 2.07 0.03 0.00 4.70
2888 3104 5.895636 ATATGTGAATGAAACGCCAAAGA 57.104 34.783 0.00 0.00 0.00 2.52
2909 3125 1.032014 AATGCAGTTGTGGCGAGTTT 58.968 45.000 0.00 0.00 0.00 2.66
2910 3126 1.890876 ATGCAGTTGTGGCGAGTTTA 58.109 45.000 0.00 0.00 0.00 2.01
2927 3143 6.024049 CGAGTTTACAGGAATTTGAGCATTC 58.976 40.000 0.00 0.00 33.04 2.67
2939 3155 8.403606 GAATTTGAGCATTCCAAGAGTAAATG 57.596 34.615 0.00 0.00 34.30 2.32
2942 3158 3.070429 GCATTCCAAGAGTAAATGCGG 57.930 47.619 3.82 0.00 43.90 5.69
2962 3178 2.472029 GGAGGAGGAGATCAGGTTTCA 58.528 52.381 0.00 0.00 0.00 2.69
2965 3181 3.251484 AGGAGGAGATCAGGTTTCAACA 58.749 45.455 0.00 0.00 0.00 3.33
2973 3189 0.236711 CAGGTTTCAACAGCTGCTCG 59.763 55.000 15.27 2.00 35.58 5.03
2995 3211 2.696707 TGTTACACCGGTTCAAGAGTCT 59.303 45.455 2.97 0.00 0.00 3.24
3083 3299 2.353858 CCATGCATGGTGGTGTGTT 58.646 52.632 33.68 0.00 43.05 3.32
3084 3300 1.543607 CCATGCATGGTGGTGTGTTA 58.456 50.000 33.68 0.00 43.05 2.41
3085 3301 1.473677 CCATGCATGGTGGTGTGTTAG 59.526 52.381 33.68 7.13 43.05 2.34
3086 3302 2.435422 CATGCATGGTGGTGTGTTAGA 58.565 47.619 19.40 0.00 0.00 2.10
3087 3303 2.647683 TGCATGGTGGTGTGTTAGAA 57.352 45.000 0.00 0.00 0.00 2.10
3088 3304 3.153369 TGCATGGTGGTGTGTTAGAAT 57.847 42.857 0.00 0.00 0.00 2.40
3090 3306 4.657013 TGCATGGTGGTGTGTTAGAATAA 58.343 39.130 0.00 0.00 0.00 1.40
3091 3307 4.699735 TGCATGGTGGTGTGTTAGAATAAG 59.300 41.667 0.00 0.00 0.00 1.73
3095 3311 7.523052 GCATGGTGGTGTGTTAGAATAAGAAAA 60.523 37.037 0.00 0.00 0.00 2.29
3096 3312 8.522830 CATGGTGGTGTGTTAGAATAAGAAAAT 58.477 33.333 0.00 0.00 0.00 1.82
3172 3420 3.241530 TGGTGCCAGGAGCTCGTT 61.242 61.111 6.10 0.00 44.23 3.85
3196 3444 3.846360 AGTAGCACGTGAAGGTTGATAC 58.154 45.455 22.23 3.29 0.00 2.24
3208 3456 1.485066 GGTTGATACCCGACCACTCAT 59.515 52.381 0.00 0.00 46.70 2.90
3229 3477 9.300681 ACTCATATTTCACTTGAATGGAGAAAA 57.699 29.630 12.68 0.00 33.54 2.29
3284 3532 6.074994 GCATTTACGACGTCTTATAGTGAAGG 60.075 42.308 14.70 9.25 0.00 3.46
3311 3559 8.645110 TCTTGTAGTGGGGTTTTATATAGCTAC 58.355 37.037 0.00 0.00 0.00 3.58
3331 3579 3.937814 ACGTGAAAGTGCATCTCCATTA 58.062 40.909 0.00 0.00 0.00 1.90
3336 3584 5.822519 GTGAAAGTGCATCTCCATTATACCA 59.177 40.000 0.00 0.00 0.00 3.25
3338 3586 5.636903 AAGTGCATCTCCATTATACCACT 57.363 39.130 0.00 0.00 34.10 4.00
3359 3607 6.375174 CCACTGTTGGTTTTGATGATCTATGA 59.625 38.462 0.00 0.00 38.23 2.15
3401 3649 8.345724 ACTGATGTTTCATTGAGCTTATTTCT 57.654 30.769 0.00 0.00 0.00 2.52
3403 3651 8.975410 TGATGTTTCATTGAGCTTATTTCTTG 57.025 30.769 0.00 0.00 0.00 3.02
3418 3666 8.777413 GCTTATTTCTTGTATAGCATGTGATCA 58.223 33.333 0.00 0.00 0.00 2.92
3457 3705 4.093743 TGGCTACAAGTGGAAGATCACTA 58.906 43.478 0.00 0.00 46.17 2.74
3479 3728 7.432252 CACTAGTGACCATTCAAACAACTTTTC 59.568 37.037 18.45 0.00 31.90 2.29
3482 3731 8.062065 AGTGACCATTCAAACAACTTTTCTAA 57.938 30.769 0.00 0.00 31.90 2.10
3505 3754 3.154710 TGTTGTTCTCCTCGAGCTCTTA 58.845 45.455 12.85 0.00 0.00 2.10
3514 3763 8.948145 GTTCTCCTCGAGCTCTTATTATGTATA 58.052 37.037 12.85 0.00 0.00 1.47
3548 3797 6.993786 TTGGCGAATACAAGATTCACATTA 57.006 33.333 0.00 0.00 0.00 1.90
3568 3817 8.699749 CACATTACGTATATGACAACCATACTG 58.300 37.037 18.43 4.96 40.29 2.74
3573 3822 7.324935 ACGTATATGACAACCATACTGTGAAA 58.675 34.615 0.00 0.00 40.29 2.69
3577 3826 3.568007 TGACAACCATACTGTGAAAAGGC 59.432 43.478 0.00 0.00 0.00 4.35
3578 3827 3.561143 ACAACCATACTGTGAAAAGGCA 58.439 40.909 0.00 0.00 0.00 4.75
3585 3834 5.647658 CCATACTGTGAAAAGGCATACAAGA 59.352 40.000 0.00 0.00 0.00 3.02
3601 3850 9.255304 GGCATACAAGAAAATACTTTGTTTGAA 57.745 29.630 9.95 0.00 0.00 2.69
3679 3935 8.019656 TGAGTTTCTCTAAGTCTGGTACTTTT 57.980 34.615 0.00 0.00 46.61 2.27
3691 3947 8.753497 AGTCTGGTACTTTTGAAGATTTTCTT 57.247 30.769 0.00 0.00 35.38 2.52
3705 3961 6.210287 AGATTTTCTTCCGGTACTACTGAG 57.790 41.667 0.00 0.00 0.00 3.35
3730 3986 5.069251 CCACTTAGGGTTACTCATACTCAGG 59.931 48.000 0.00 0.00 0.00 3.86
3749 4005 4.105697 TCAGGGGTCAAACCTAGTTTCAAT 59.894 41.667 0.00 0.00 38.64 2.57
3755 4011 5.300792 GGTCAAACCTAGTTTCAATGGTTCA 59.699 40.000 0.00 0.00 41.36 3.18
3756 4012 6.206498 GTCAAACCTAGTTTCAATGGTTCAC 58.794 40.000 0.00 0.00 41.36 3.18
3783 4039 7.485810 ACCGCTATTTATTTTGTTATGGAACC 58.514 34.615 0.00 0.00 34.38 3.62
3785 4041 6.141685 CGCTATTTATTTTGTTATGGAACCGC 59.858 38.462 0.00 0.00 34.38 5.68
3789 4045 1.893544 TTTGTTATGGAACCGCCGAA 58.106 45.000 0.00 0.00 40.66 4.30
3790 4046 1.158434 TTGTTATGGAACCGCCGAAC 58.842 50.000 0.00 0.00 40.66 3.95
3791 4047 0.035036 TGTTATGGAACCGCCGAACA 59.965 50.000 0.00 0.00 40.70 3.18
3792 4048 0.725117 GTTATGGAACCGCCGAACAG 59.275 55.000 0.00 0.00 40.66 3.16
3830 4086 2.096819 TGTTTGTTTGCTCCGACACTTC 59.903 45.455 0.00 0.00 0.00 3.01
3834 4090 0.105224 TTTGCTCCGACACTTCCGAA 59.895 50.000 0.00 0.00 0.00 4.30
3838 4094 0.314302 CTCCGACACTTCCGAACACT 59.686 55.000 0.00 0.00 0.00 3.55
3867 4123 9.715121 AAAATTCATTAGTACTTCCAAGTCGTA 57.285 29.630 0.00 0.00 40.37 3.43
3879 4135 3.745975 TCCAAGTCGTATCAGTTTGCTTG 59.254 43.478 0.00 0.00 33.70 4.01
3881 4137 4.024048 CCAAGTCGTATCAGTTTGCTTGTT 60.024 41.667 0.00 0.00 32.49 2.83
3889 4145 1.928503 CAGTTTGCTTGTTTGCTGGTG 59.071 47.619 0.00 0.00 0.00 4.17
3890 4146 1.550072 AGTTTGCTTGTTTGCTGGTGT 59.450 42.857 0.00 0.00 0.00 4.16
3891 4147 2.028203 AGTTTGCTTGTTTGCTGGTGTT 60.028 40.909 0.00 0.00 0.00 3.32
3892 4148 2.741517 GTTTGCTTGTTTGCTGGTGTTT 59.258 40.909 0.00 0.00 0.00 2.83
3893 4149 2.758736 TGCTTGTTTGCTGGTGTTTT 57.241 40.000 0.00 0.00 0.00 2.43
3894 4150 3.051081 TGCTTGTTTGCTGGTGTTTTT 57.949 38.095 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.808414 TTGCTTGCTCTCTGTATGTACT 57.192 40.909 0.00 0.00 0.00 2.73
1 2 4.201628 CGTTTGCTTGCTCTCTGTATGTAC 60.202 45.833 0.00 0.00 0.00 2.90
2 3 3.926527 CGTTTGCTTGCTCTCTGTATGTA 59.073 43.478 0.00 0.00 0.00 2.29
3 4 2.738846 CGTTTGCTTGCTCTCTGTATGT 59.261 45.455 0.00 0.00 0.00 2.29
4 5 2.094894 CCGTTTGCTTGCTCTCTGTATG 59.905 50.000 0.00 0.00 0.00 2.39
5 6 2.289694 ACCGTTTGCTTGCTCTCTGTAT 60.290 45.455 0.00 0.00 0.00 2.29
6 7 1.070134 ACCGTTTGCTTGCTCTCTGTA 59.930 47.619 0.00 0.00 0.00 2.74
7 8 0.179045 ACCGTTTGCTTGCTCTCTGT 60.179 50.000 0.00 0.00 0.00 3.41
8 9 1.795768 TACCGTTTGCTTGCTCTCTG 58.204 50.000 0.00 0.00 0.00 3.35
9 10 2.543777 TTACCGTTTGCTTGCTCTCT 57.456 45.000 0.00 0.00 0.00 3.10
10 11 2.548480 AGTTTACCGTTTGCTTGCTCTC 59.452 45.455 0.00 0.00 0.00 3.20
23 24 0.895530 TCCAGAGGCAGAGTTTACCG 59.104 55.000 0.00 0.00 0.00 4.02
73 74 0.618458 TATCGAGCAGCCCCAAAACT 59.382 50.000 0.00 0.00 0.00 2.66
74 75 1.459450 TTATCGAGCAGCCCCAAAAC 58.541 50.000 0.00 0.00 0.00 2.43
75 76 2.208132 TTTATCGAGCAGCCCCAAAA 57.792 45.000 0.00 0.00 0.00 2.44
76 77 2.208132 TTTTATCGAGCAGCCCCAAA 57.792 45.000 0.00 0.00 0.00 3.28
77 78 2.297701 GATTTTATCGAGCAGCCCCAA 58.702 47.619 0.00 0.00 0.00 4.12
98 99 1.650825 CCACTTTTTGTGTTGTGCCC 58.349 50.000 0.00 0.00 44.81 5.36
99 100 1.650825 CCCACTTTTTGTGTTGTGCC 58.349 50.000 0.00 0.00 44.81 5.01
104 105 0.539518 GGGTGCCCACTTTTTGTGTT 59.460 50.000 1.66 0.00 44.81 3.32
116 117 2.066999 CCTCTGGACTAGGGTGCCC 61.067 68.421 0.00 0.00 32.62 5.36
119 120 2.498078 GTTTCTCCTCTGGACTAGGGTG 59.502 54.545 0.00 0.00 34.66 4.61
123 124 1.751924 CCCGTTTCTCCTCTGGACTAG 59.248 57.143 0.00 0.00 0.00 2.57
125 126 0.114560 TCCCGTTTCTCCTCTGGACT 59.885 55.000 0.00 0.00 0.00 3.85
126 127 0.533032 CTCCCGTTTCTCCTCTGGAC 59.467 60.000 0.00 0.00 0.00 4.02
140 141 0.248784 GTAATCCGGTTCGACTCCCG 60.249 60.000 0.00 9.73 43.82 5.14
164 165 4.047125 CCTTCCCACCCGTGCCAT 62.047 66.667 0.00 0.00 0.00 4.40
169 170 4.948080 ACGTCCCTTCCCACCCGT 62.948 66.667 0.00 0.00 0.00 5.28
176 177 0.890683 TCCTCGTAAACGTCCCTTCC 59.109 55.000 2.02 0.00 40.80 3.46
178 179 1.966354 AGTTCCTCGTAAACGTCCCTT 59.034 47.619 2.02 0.00 40.80 3.95
179 180 1.271656 CAGTTCCTCGTAAACGTCCCT 59.728 52.381 2.02 0.00 40.80 4.20
180 181 1.670967 CCAGTTCCTCGTAAACGTCCC 60.671 57.143 2.02 0.00 40.80 4.46
181 182 1.270550 TCCAGTTCCTCGTAAACGTCC 59.729 52.381 2.02 0.00 40.80 4.79
182 183 2.227388 TCTCCAGTTCCTCGTAAACGTC 59.773 50.000 2.02 0.00 40.80 4.34
183 184 2.233271 TCTCCAGTTCCTCGTAAACGT 58.767 47.619 2.02 0.00 40.80 3.99
184 185 3.179830 CATCTCCAGTTCCTCGTAAACG 58.820 50.000 0.00 0.00 41.45 3.60
185 186 3.056035 ACCATCTCCAGTTCCTCGTAAAC 60.056 47.826 0.00 0.00 0.00 2.01
186 187 3.056107 CACCATCTCCAGTTCCTCGTAAA 60.056 47.826 0.00 0.00 0.00 2.01
187 188 2.496070 CACCATCTCCAGTTCCTCGTAA 59.504 50.000 0.00 0.00 0.00 3.18
188 189 2.100197 CACCATCTCCAGTTCCTCGTA 58.900 52.381 0.00 0.00 0.00 3.43
189 190 0.898320 CACCATCTCCAGTTCCTCGT 59.102 55.000 0.00 0.00 0.00 4.18
190 191 1.186200 TCACCATCTCCAGTTCCTCG 58.814 55.000 0.00 0.00 0.00 4.63
195 196 0.257039 GCCCATCACCATCTCCAGTT 59.743 55.000 0.00 0.00 0.00 3.16
197 198 1.150081 GGCCCATCACCATCTCCAG 59.850 63.158 0.00 0.00 0.00 3.86
226 227 2.911102 GCATAGCAAACGCTTTGTCTTC 59.089 45.455 6.73 0.00 42.56 2.87
236 237 1.066257 GGCATGGGCATAGCAAACG 59.934 57.895 0.00 0.00 43.71 3.60
242 243 0.748450 CTTGTTGGGCATGGGCATAG 59.252 55.000 0.00 0.00 43.71 2.23
269 270 9.220767 CTCTAAACTATAGCTCACCTTTTTGTT 57.779 33.333 0.00 0.00 0.00 2.83
271 272 9.436957 TTCTCTAAACTATAGCTCACCTTTTTG 57.563 33.333 0.00 0.00 0.00 2.44
276 277 9.825109 GAATTTTCTCTAAACTATAGCTCACCT 57.175 33.333 0.00 0.00 0.00 4.00
277 278 9.601217 TGAATTTTCTCTAAACTATAGCTCACC 57.399 33.333 0.00 0.00 0.00 4.02
302 334 6.099341 GGGGTCAAGTTACAAGCATAAATTG 58.901 40.000 8.44 8.44 40.03 2.32
307 339 3.329520 AGTGGGGTCAAGTTACAAGCATA 59.670 43.478 0.00 0.00 0.00 3.14
308 340 2.108250 AGTGGGGTCAAGTTACAAGCAT 59.892 45.455 0.00 0.00 0.00 3.79
309 341 1.493022 AGTGGGGTCAAGTTACAAGCA 59.507 47.619 0.00 0.00 0.00 3.91
310 342 2.271944 AGTGGGGTCAAGTTACAAGC 57.728 50.000 0.00 0.00 0.00 4.01
312 344 5.366186 TGTAAGTAGTGGGGTCAAGTTACAA 59.634 40.000 0.00 0.00 0.00 2.41
313 345 4.900652 TGTAAGTAGTGGGGTCAAGTTACA 59.099 41.667 0.00 0.00 0.00 2.41
314 346 5.473066 TGTAAGTAGTGGGGTCAAGTTAC 57.527 43.478 0.00 0.00 0.00 2.50
351 383 4.848086 AGGGGCAAAACTTAGTAGGTTAGA 59.152 41.667 0.00 0.00 28.99 2.10
352 384 5.175388 AGGGGCAAAACTTAGTAGGTTAG 57.825 43.478 0.00 0.00 28.99 2.34
353 385 6.896452 ATAGGGGCAAAACTTAGTAGGTTA 57.104 37.500 0.00 0.00 28.99 2.85
362 394 8.650490 CCATATAATGAAATAGGGGCAAAACTT 58.350 33.333 0.00 0.00 31.12 2.66
393 425 8.896722 ATGTCGACCCTAGGTATTTCTATAAT 57.103 34.615 14.12 0.00 35.25 1.28
407 439 2.500098 CCTGAAGGAAATGTCGACCCTA 59.500 50.000 14.12 0.00 37.39 3.53
408 440 1.279271 CCTGAAGGAAATGTCGACCCT 59.721 52.381 14.12 9.26 37.39 4.34
409 441 1.003233 ACCTGAAGGAAATGTCGACCC 59.997 52.381 14.12 6.79 38.94 4.46
411 443 3.320673 AGACCTGAAGGAAATGTCGAC 57.679 47.619 9.11 9.11 38.94 4.20
412 444 3.306780 GGAAGACCTGAAGGAAATGTCGA 60.307 47.826 2.62 0.00 38.94 4.20
427 459 6.404844 GCAAAGCTTAGAAAATAGGGAAGACC 60.405 42.308 0.00 0.00 40.67 3.85
436 468 6.374333 AGGAATGTCGCAAAGCTTAGAAAATA 59.626 34.615 0.00 0.00 0.00 1.40
437 469 5.183904 AGGAATGTCGCAAAGCTTAGAAAAT 59.816 36.000 0.00 0.00 0.00 1.82
438 470 4.518970 AGGAATGTCGCAAAGCTTAGAAAA 59.481 37.500 0.00 0.00 0.00 2.29
451 483 3.516615 GGATGCTATAGAGGAATGTCGC 58.483 50.000 3.21 0.00 0.00 5.19
463 495 2.103373 GAGATGCTCGGGGATGCTATA 58.897 52.381 0.00 0.00 0.00 1.31
465 497 1.188219 GGAGATGCTCGGGGATGCTA 61.188 60.000 0.00 0.00 0.00 3.49
467 499 2.031768 GGAGATGCTCGGGGATGC 59.968 66.667 0.00 0.00 0.00 3.91
468 500 0.321387 CATGGAGATGCTCGGGGATG 60.321 60.000 0.00 0.00 0.00 3.51
469 501 1.486997 CCATGGAGATGCTCGGGGAT 61.487 60.000 5.56 0.00 0.00 3.85
470 502 2.142761 CCATGGAGATGCTCGGGGA 61.143 63.158 5.56 0.00 0.00 4.81
471 503 1.486997 ATCCATGGAGATGCTCGGGG 61.487 60.000 21.33 0.00 0.00 5.73
472 504 0.399454 AATCCATGGAGATGCTCGGG 59.601 55.000 21.33 0.00 0.00 5.14
473 505 2.267174 AAATCCATGGAGATGCTCGG 57.733 50.000 21.33 0.00 0.00 4.63
474 506 3.379372 ACAAAAATCCATGGAGATGCTCG 59.621 43.478 21.33 7.61 0.00 5.03
475 507 4.996788 ACAAAAATCCATGGAGATGCTC 57.003 40.909 21.33 0.00 0.00 4.26
476 508 5.750352 AAACAAAAATCCATGGAGATGCT 57.250 34.783 21.33 0.00 0.00 3.79
477 509 5.702209 ACAAAACAAAAATCCATGGAGATGC 59.298 36.000 21.33 0.00 0.00 3.91
478 510 7.733402 AACAAAACAAAAATCCATGGAGATG 57.267 32.000 21.33 16.97 0.00 2.90
479 511 8.623030 CAAAACAAAACAAAAATCCATGGAGAT 58.377 29.630 21.33 8.87 0.00 2.75
480 512 7.609532 ACAAAACAAAACAAAAATCCATGGAGA 59.390 29.630 21.33 0.00 0.00 3.71
481 513 7.760437 ACAAAACAAAACAAAAATCCATGGAG 58.240 30.769 21.33 8.53 0.00 3.86
482 514 7.693969 ACAAAACAAAACAAAAATCCATGGA 57.306 28.000 18.88 18.88 0.00 3.41
483 515 8.754230 AAACAAAACAAAACAAAAATCCATGG 57.246 26.923 4.97 4.97 0.00 3.66
486 518 8.958043 CGAAAAACAAAACAAAACAAAAATCCA 58.042 25.926 0.00 0.00 0.00 3.41
487 519 8.420945 CCGAAAAACAAAACAAAACAAAAATCC 58.579 29.630 0.00 0.00 0.00 3.01
488 520 8.959058 ACCGAAAAACAAAACAAAACAAAAATC 58.041 25.926 0.00 0.00 0.00 2.17
489 521 8.746751 CACCGAAAAACAAAACAAAACAAAAAT 58.253 25.926 0.00 0.00 0.00 1.82
490 522 7.253651 GCACCGAAAAACAAAACAAAACAAAAA 60.254 29.630 0.00 0.00 0.00 1.94
491 523 6.196538 GCACCGAAAAACAAAACAAAACAAAA 59.803 30.769 0.00 0.00 0.00 2.44
492 524 5.681543 GCACCGAAAAACAAAACAAAACAAA 59.318 32.000 0.00 0.00 0.00 2.83
493 525 5.007724 AGCACCGAAAAACAAAACAAAACAA 59.992 32.000 0.00 0.00 0.00 2.83
494 526 4.511826 AGCACCGAAAAACAAAACAAAACA 59.488 33.333 0.00 0.00 0.00 2.83
495 527 5.024768 AGCACCGAAAAACAAAACAAAAC 57.975 34.783 0.00 0.00 0.00 2.43
496 528 5.674933 AAGCACCGAAAAACAAAACAAAA 57.325 30.435 0.00 0.00 0.00 2.44
497 529 6.369065 ACATAAGCACCGAAAAACAAAACAAA 59.631 30.769 0.00 0.00 0.00 2.83
498 530 5.869888 ACATAAGCACCGAAAAACAAAACAA 59.130 32.000 0.00 0.00 0.00 2.83
499 531 5.411781 ACATAAGCACCGAAAAACAAAACA 58.588 33.333 0.00 0.00 0.00 2.83
500 532 5.959652 ACATAAGCACCGAAAAACAAAAC 57.040 34.783 0.00 0.00 0.00 2.43
501 533 6.969828 AAACATAAGCACCGAAAAACAAAA 57.030 29.167 0.00 0.00 0.00 2.44
502 534 6.590292 TGAAAACATAAGCACCGAAAAACAAA 59.410 30.769 0.00 0.00 0.00 2.83
503 535 6.100004 TGAAAACATAAGCACCGAAAAACAA 58.900 32.000 0.00 0.00 0.00 2.83
504 536 5.651530 TGAAAACATAAGCACCGAAAAACA 58.348 33.333 0.00 0.00 0.00 2.83
505 537 6.292114 CCTTGAAAACATAAGCACCGAAAAAC 60.292 38.462 0.00 0.00 0.00 2.43
506 538 5.751028 CCTTGAAAACATAAGCACCGAAAAA 59.249 36.000 0.00 0.00 0.00 1.94
507 539 5.067936 TCCTTGAAAACATAAGCACCGAAAA 59.932 36.000 0.00 0.00 0.00 2.29
508 540 4.580995 TCCTTGAAAACATAAGCACCGAAA 59.419 37.500 0.00 0.00 0.00 3.46
509 541 4.138290 TCCTTGAAAACATAAGCACCGAA 58.862 39.130 0.00 0.00 0.00 4.30
510 542 3.745799 TCCTTGAAAACATAAGCACCGA 58.254 40.909 0.00 0.00 0.00 4.69
511 543 3.751175 TCTCCTTGAAAACATAAGCACCG 59.249 43.478 0.00 0.00 0.00 4.94
512 544 5.705609 TTCTCCTTGAAAACATAAGCACC 57.294 39.130 0.00 0.00 0.00 5.01
513 545 9.860898 ATTTATTCTCCTTGAAAACATAAGCAC 57.139 29.630 0.00 0.00 38.29 4.40
524 556 9.989296 TCCCTGAAAATATTTATTCTCCTTGAA 57.011 29.630 0.01 0.00 39.24 2.69
537 569 9.700831 AGCTTTTGTAGTATCCCTGAAAATATT 57.299 29.630 0.00 0.00 0.00 1.28
538 570 9.700831 AAGCTTTTGTAGTATCCCTGAAAATAT 57.299 29.630 0.00 0.00 0.00 1.28
540 572 9.178758 CTAAGCTTTTGTAGTATCCCTGAAAAT 57.821 33.333 3.20 0.00 0.00 1.82
541 573 8.380099 TCTAAGCTTTTGTAGTATCCCTGAAAA 58.620 33.333 3.20 0.00 0.00 2.29
556 588 7.148490 GGCTCTTCTCTACTTTCTAAGCTTTTG 60.148 40.741 3.20 0.00 0.00 2.44
581 613 2.159476 CCATGAGCGATGTTTCAGTTGG 60.159 50.000 0.00 0.00 0.00 3.77
586 618 6.698008 AAAATATCCATGAGCGATGTTTCA 57.302 33.333 0.00 0.00 32.04 2.69
587 619 8.128582 TGTTAAAATATCCATGAGCGATGTTTC 58.871 33.333 0.00 0.00 32.04 2.78
595 627 6.127758 TGTGTGGTGTTAAAATATCCATGAGC 60.128 38.462 0.00 0.00 0.00 4.26
597 629 7.574030 CGTTGTGTGGTGTTAAAATATCCATGA 60.574 37.037 0.00 0.00 0.00 3.07
598 630 6.526325 CGTTGTGTGGTGTTAAAATATCCATG 59.474 38.462 0.00 0.00 0.00 3.66
599 631 6.349777 CCGTTGTGTGGTGTTAAAATATCCAT 60.350 38.462 0.00 0.00 0.00 3.41
600 632 5.048643 CCGTTGTGTGGTGTTAAAATATCCA 60.049 40.000 0.00 0.00 0.00 3.41
601 633 5.181622 TCCGTTGTGTGGTGTTAAAATATCC 59.818 40.000 0.00 0.00 0.00 2.59
602 634 6.243811 TCCGTTGTGTGGTGTTAAAATATC 57.756 37.500 0.00 0.00 0.00 1.63
603 635 6.440436 GTTCCGTTGTGTGGTGTTAAAATAT 58.560 36.000 0.00 0.00 0.00 1.28
604 636 5.503683 CGTTCCGTTGTGTGGTGTTAAAATA 60.504 40.000 0.00 0.00 0.00 1.40
605 637 4.674475 GTTCCGTTGTGTGGTGTTAAAAT 58.326 39.130 0.00 0.00 0.00 1.82
606 638 3.425892 CGTTCCGTTGTGTGGTGTTAAAA 60.426 43.478 0.00 0.00 0.00 1.52
607 639 2.095532 CGTTCCGTTGTGTGGTGTTAAA 59.904 45.455 0.00 0.00 0.00 1.52
608 640 1.664659 CGTTCCGTTGTGTGGTGTTAA 59.335 47.619 0.00 0.00 0.00 2.01
609 641 1.288350 CGTTCCGTTGTGTGGTGTTA 58.712 50.000 0.00 0.00 0.00 2.41
610 642 1.984321 GCGTTCCGTTGTGTGGTGTT 61.984 55.000 0.00 0.00 0.00 3.32
611 643 2.466140 GCGTTCCGTTGTGTGGTGT 61.466 57.895 0.00 0.00 0.00 4.16
612 644 2.326550 GCGTTCCGTTGTGTGGTG 59.673 61.111 0.00 0.00 0.00 4.17
613 645 3.266376 CGCGTTCCGTTGTGTGGT 61.266 61.111 0.00 0.00 0.00 4.16
614 646 4.007940 CCGCGTTCCGTTGTGTGG 62.008 66.667 4.92 0.00 34.38 4.17
615 647 4.007940 CCCGCGTTCCGTTGTGTG 62.008 66.667 4.92 0.00 34.38 3.82
619 651 3.471244 TTTTGCCCGCGTTCCGTTG 62.471 57.895 4.92 0.00 34.38 4.10
620 652 3.210528 TTTTGCCCGCGTTCCGTT 61.211 55.556 4.92 0.00 34.38 4.44
621 653 3.956317 GTTTTGCCCGCGTTCCGT 61.956 61.111 4.92 0.00 34.38 4.69
622 654 3.656045 AGTTTTGCCCGCGTTCCG 61.656 61.111 4.92 0.00 0.00 4.30
623 655 2.050442 CAGTTTTGCCCGCGTTCC 60.050 61.111 4.92 0.00 0.00 3.62
624 656 1.082104 CTCAGTTTTGCCCGCGTTC 60.082 57.895 4.92 0.00 0.00 3.95
625 657 0.533308 TACTCAGTTTTGCCCGCGTT 60.533 50.000 4.92 0.00 0.00 4.84
626 658 0.321298 ATACTCAGTTTTGCCCGCGT 60.321 50.000 4.92 0.00 0.00 6.01
627 659 0.802494 AATACTCAGTTTTGCCCGCG 59.198 50.000 0.00 0.00 0.00 6.46
628 660 1.810151 TCAATACTCAGTTTTGCCCGC 59.190 47.619 3.24 0.00 0.00 6.13
629 661 3.941483 AGATCAATACTCAGTTTTGCCCG 59.059 43.478 3.24 0.00 0.00 6.13
630 662 5.904362 AAGATCAATACTCAGTTTTGCCC 57.096 39.130 3.24 0.00 0.00 5.36
631 663 9.860898 AATTTAAGATCAATACTCAGTTTTGCC 57.139 29.630 3.24 0.00 0.00 4.52
674 706 2.500229 ACACCTAACACGAACCCATTG 58.500 47.619 0.00 0.00 0.00 2.82
680 712 8.186821 ACTTACATATCTACACCTAACACGAAC 58.813 37.037 0.00 0.00 0.00 3.95
685 717 8.464404 GTCACACTTACATATCTACACCTAACA 58.536 37.037 0.00 0.00 0.00 2.41
694 726 9.642343 AATCCACTAGTCACACTTACATATCTA 57.358 33.333 0.00 0.00 0.00 1.98
702 734 4.521639 ACACGAATCCACTAGTCACACTTA 59.478 41.667 0.00 0.00 0.00 2.24
711 743 4.398358 TCACTCCTAACACGAATCCACTAG 59.602 45.833 0.00 0.00 0.00 2.57
714 746 3.587797 TCACTCCTAACACGAATCCAC 57.412 47.619 0.00 0.00 0.00 4.02
715 747 4.819105 AATCACTCCTAACACGAATCCA 57.181 40.909 0.00 0.00 0.00 3.41
723 755 7.712639 GCATCAAGATCTAAATCACTCCTAACA 59.287 37.037 0.00 0.00 34.07 2.41
733 765 4.978099 TGAGGGGCATCAAGATCTAAATC 58.022 43.478 0.00 0.00 0.00 2.17
742 914 3.359033 TGAATCTTTGAGGGGCATCAAG 58.641 45.455 4.82 1.46 40.16 3.02
747 919 3.523157 TGTCTATGAATCTTTGAGGGGCA 59.477 43.478 0.00 0.00 0.00 5.36
764 936 2.011947 ACGTGTCCGATTCGATGTCTA 58.988 47.619 7.83 0.00 37.88 2.59
780 952 0.179145 AACTCTTCCGGCGATACGTG 60.179 55.000 9.30 0.00 0.00 4.49
783 955 1.269154 GGAGAACTCTTCCGGCGATAC 60.269 57.143 9.30 0.00 0.00 2.24
785 957 1.817209 GGAGAACTCTTCCGGCGAT 59.183 57.895 9.30 0.00 0.00 4.58
825 997 0.235926 GAGAACTGTTCGCTGCAACC 59.764 55.000 15.67 0.00 34.02 3.77
829 1001 1.458827 CTGAAGAGAACTGTTCGCTGC 59.541 52.381 24.11 22.65 39.82 5.25
874 1046 4.112341 CTTGCTTCGGCTGCCTGC 62.112 66.667 17.92 17.48 42.37 4.85
875 1047 4.112341 GCTTGCTTCGGCTGCCTG 62.112 66.667 17.92 10.52 42.37 4.85
876 1048 2.959484 TAGCTTGCTTCGGCTGCCT 61.959 57.895 17.92 0.00 42.37 4.75
877 1049 2.436646 TAGCTTGCTTCGGCTGCC 60.437 61.111 9.11 9.11 42.37 4.85
889 1061 4.926207 CGGCTTAACCCGTAGCTT 57.074 55.556 0.77 0.00 43.24 3.74
896 1068 0.108041 TCAACCGATCGGCTTAACCC 60.108 55.000 33.62 0.00 39.32 4.11
909 1081 4.077184 TGCTAGGCCCGTCAACCG 62.077 66.667 0.00 0.00 0.00 4.44
922 1094 2.259204 GTGTGTACGGGCGTGCTA 59.741 61.111 0.00 0.00 0.00 3.49
928 1100 1.217244 CCCTACTGTGTGTACGGGC 59.783 63.158 0.00 0.00 37.51 6.13
976 1148 1.326548 GCCTTATTTACGAGCCGTGTG 59.673 52.381 10.01 0.00 41.39 3.82
999 1171 3.393970 CGAGCTGCTCCCCTTGGA 61.394 66.667 22.97 0.00 38.75 3.53
1007 1179 2.202676 CGAGGGAACGAGCTGCTC 60.203 66.667 19.53 19.53 35.09 4.26
1008 1180 2.992114 ACGAGGGAACGAGCTGCT 60.992 61.111 0.00 0.00 37.03 4.24
1009 1181 2.507324 GACGAGGGAACGAGCTGC 60.507 66.667 0.00 0.00 37.03 5.25
1010 1182 1.994507 ATCGACGAGGGAACGAGCTG 61.995 60.000 3.01 0.00 39.31 4.24
1012 1184 0.316854 GTATCGACGAGGGAACGAGC 60.317 60.000 3.01 0.00 39.31 5.03
1013 1185 3.821881 GTATCGACGAGGGAACGAG 57.178 57.895 3.01 0.00 39.31 4.18
1029 1201 0.458669 GGGGCTCGAACTTGATCGTA 59.541 55.000 0.66 0.00 43.19 3.43
1332 1508 1.038130 AGTCCTCGAAGCGCTGGTAT 61.038 55.000 12.58 0.00 0.00 2.73
1523 1699 0.305922 GATGCAGTCATTGGCGTAGC 59.694 55.000 0.00 0.00 43.52 3.58
1529 1705 1.100510 CCACAGGATGCAGTCATTGG 58.899 55.000 0.00 0.00 42.53 3.16
1555 1731 2.167219 CGCCCATGTCTACGTGCTG 61.167 63.158 0.00 0.00 0.00 4.41
1556 1732 2.184322 CGCCCATGTCTACGTGCT 59.816 61.111 0.00 0.00 0.00 4.40
1557 1733 3.564027 GCGCCCATGTCTACGTGC 61.564 66.667 0.00 0.00 0.00 5.34
1696 1872 1.377202 CAATGGTGAGGACCCCGTG 60.377 63.158 0.00 0.00 42.34 4.94
1766 1942 0.036765 GATGGCCACCGTGTCAGTAA 60.037 55.000 8.16 0.00 0.00 2.24
1812 1988 2.986306 GCCGAACGGAAGGACGAGA 61.986 63.158 17.63 0.00 37.50 4.04
1890 2066 1.934220 GACAGATGGACGCCTCGACA 61.934 60.000 0.00 0.00 0.00 4.35
2100 2276 7.992754 AGGGCTTATGAGAATTAATTAGCAG 57.007 36.000 16.34 3.90 31.65 4.24
2182 2360 7.483059 GTGAGTCAAGTTCACAAAGAAAAAGAG 59.517 37.037 0.00 0.00 43.41 2.85
2249 2427 1.811965 TGCAATTTCGGGTGAGTGATG 59.188 47.619 0.00 0.00 0.00 3.07
2294 2472 8.076781 TGCGCACTTTACTATCATGTTTTTAAA 58.923 29.630 5.66 0.00 0.00 1.52
2366 2573 5.815581 ACTGACCAAAATTCTATACCTGCA 58.184 37.500 0.00 0.00 0.00 4.41
2368 2575 9.449719 AACTTACTGACCAAAATTCTATACCTG 57.550 33.333 0.00 0.00 0.00 4.00
2409 2617 4.094887 GTCTAAAACATCGCCATCACACAT 59.905 41.667 0.00 0.00 0.00 3.21
2420 2628 3.605634 TCCACCCATGTCTAAAACATCG 58.394 45.455 0.00 0.00 45.78 3.84
2587 2802 3.653835 GAGCTTCTCCAAATTAGGGGT 57.346 47.619 0.00 0.00 0.00 4.95
2627 2842 5.232463 AGTGCAATTAAAAAGAGGCATGTG 58.768 37.500 0.00 0.00 33.43 3.21
2670 2885 6.483640 AGATTTTTGTCTCAGGTGTACAAGAC 59.516 38.462 15.54 15.54 38.86 3.01
2718 2934 0.543749 CCCTTTGCTCCTCTTCGGAT 59.456 55.000 0.00 0.00 42.12 4.18
2759 2975 1.678627 TGAAACACATTGGTTGGGACG 59.321 47.619 0.00 0.00 31.13 4.79
2787 3003 4.112634 TGAGTTCAGTTTCTTGTGTCGAG 58.887 43.478 0.00 0.00 0.00 4.04
2844 3060 5.448926 TTTTGCGAAAAACTCTTTCAAGC 57.551 34.783 0.00 0.00 0.00 4.01
2862 3078 6.702972 TTGGCGTTTCATTCACATATTTTG 57.297 33.333 0.00 0.00 0.00 2.44
2875 3091 3.122297 CTGCATTTTCTTTGGCGTTTCA 58.878 40.909 0.00 0.00 0.00 2.69
2888 3104 1.032014 ACTCGCCACAACTGCATTTT 58.968 45.000 0.00 0.00 0.00 1.82
2927 3143 1.209504 TCCTCCCGCATTTACTCTTGG 59.790 52.381 0.00 0.00 0.00 3.61
2934 3150 1.971357 GATCTCCTCCTCCCGCATTTA 59.029 52.381 0.00 0.00 0.00 1.40
2939 3155 2.206536 CCTGATCTCCTCCTCCCGC 61.207 68.421 0.00 0.00 0.00 6.13
2942 3158 2.472029 TGAAACCTGATCTCCTCCTCC 58.528 52.381 0.00 0.00 0.00 4.30
2962 3178 1.217882 GTGTAACACGAGCAGCTGTT 58.782 50.000 16.64 9.79 36.32 3.16
2965 3181 1.372997 CGGTGTAACACGAGCAGCT 60.373 57.895 0.00 0.00 39.98 4.24
2973 3189 2.798847 GACTCTTGAACCGGTGTAACAC 59.201 50.000 8.52 0.00 39.98 3.32
2995 3211 2.400399 GTGCGGCGCAAATATAGAGTA 58.600 47.619 38.05 6.00 41.47 2.59
3052 3268 3.572682 CCATGCATGGCTATGTTGAATCT 59.427 43.478 31.95 0.00 41.75 2.40
3130 3378 9.882996 CACAAGCCACAATACAATACAATATAG 57.117 33.333 0.00 0.00 0.00 1.31
3131 3379 8.845227 CCACAAGCCACAATACAATACAATATA 58.155 33.333 0.00 0.00 0.00 0.86
3132 3380 7.341769 ACCACAAGCCACAATACAATACAATAT 59.658 33.333 0.00 0.00 0.00 1.28
3133 3381 6.661377 ACCACAAGCCACAATACAATACAATA 59.339 34.615 0.00 0.00 0.00 1.90
3134 3382 5.480073 ACCACAAGCCACAATACAATACAAT 59.520 36.000 0.00 0.00 0.00 2.71
3135 3383 4.830046 ACCACAAGCCACAATACAATACAA 59.170 37.500 0.00 0.00 0.00 2.41
3136 3384 4.217334 CACCACAAGCCACAATACAATACA 59.783 41.667 0.00 0.00 0.00 2.29
3137 3385 4.732784 CACCACAAGCCACAATACAATAC 58.267 43.478 0.00 0.00 0.00 1.89
3138 3386 3.192422 GCACCACAAGCCACAATACAATA 59.808 43.478 0.00 0.00 0.00 1.90
3139 3387 2.029110 GCACCACAAGCCACAATACAAT 60.029 45.455 0.00 0.00 0.00 2.71
3140 3388 1.339610 GCACCACAAGCCACAATACAA 59.660 47.619 0.00 0.00 0.00 2.41
3141 3389 0.958091 GCACCACAAGCCACAATACA 59.042 50.000 0.00 0.00 0.00 2.29
3142 3390 3.792716 GCACCACAAGCCACAATAC 57.207 52.632 0.00 0.00 0.00 1.89
3163 3411 1.351153 GTGCTACTTGAACGAGCTCC 58.649 55.000 8.47 0.00 37.12 4.70
3172 3420 2.101750 TCAACCTTCACGTGCTACTTGA 59.898 45.455 11.67 11.85 0.00 3.02
3196 3444 3.543680 AGTGAAATATGAGTGGTCGGG 57.456 47.619 0.00 0.00 0.00 5.14
3208 3456 9.753674 AGGTATTTTCTCCATTCAAGTGAAATA 57.246 29.630 0.00 0.00 37.61 1.40
3229 3477 8.499406 TGGGTGCTATGAAAAATACTAAGGTAT 58.501 33.333 0.00 0.00 40.03 2.73
3230 3478 7.863722 TGGGTGCTATGAAAAATACTAAGGTA 58.136 34.615 0.00 0.00 0.00 3.08
3231 3479 6.727394 TGGGTGCTATGAAAAATACTAAGGT 58.273 36.000 0.00 0.00 0.00 3.50
3232 3480 7.502226 TGATGGGTGCTATGAAAAATACTAAGG 59.498 37.037 0.00 0.00 0.00 2.69
3233 3481 8.450578 TGATGGGTGCTATGAAAAATACTAAG 57.549 34.615 0.00 0.00 0.00 2.18
3241 3489 3.084536 TGCTGATGGGTGCTATGAAAA 57.915 42.857 0.00 0.00 0.00 2.29
3244 3492 3.301794 AAATGCTGATGGGTGCTATGA 57.698 42.857 0.00 0.00 0.00 2.15
3284 3532 7.506971 AGCTATATAAAACCCCACTACAAGAC 58.493 38.462 0.00 0.00 0.00 3.01
3311 3559 5.050091 GGTATAATGGAGATGCACTTTCACG 60.050 44.000 0.00 0.00 0.00 4.35
3336 3584 6.942005 TGTCATAGATCATCAAAACCAACAGT 59.058 34.615 0.00 0.00 0.00 3.55
3338 3586 7.757941 TTGTCATAGATCATCAAAACCAACA 57.242 32.000 0.00 0.00 0.00 3.33
3359 3607 7.338800 ACATCAGTCATCTCAAAAGTTTTGT 57.661 32.000 24.00 6.23 0.00 2.83
3366 3614 8.168790 TCAATGAAACATCAGTCATCTCAAAA 57.831 30.769 0.00 0.00 33.31 2.44
3367 3615 7.574404 GCTCAATGAAACATCAGTCATCTCAAA 60.574 37.037 0.00 0.00 33.31 2.69
3418 3666 3.766545 AGCCAAACCTGATACACAATGT 58.233 40.909 0.00 0.00 0.00 2.71
3457 3705 6.530019 AGAAAAGTTGTTTGAATGGTCACT 57.470 33.333 0.00 0.00 31.90 3.41
3479 3728 4.499183 AGCTCGAGGAGAACAACAATTAG 58.501 43.478 15.58 0.00 0.00 1.73
3482 3731 2.564947 AGAGCTCGAGGAGAACAACAAT 59.435 45.455 15.58 0.00 0.00 2.71
3514 3763 7.103641 TCTTGTATTCGCCAAAAGTCTAGAAT 58.896 34.615 0.00 0.00 33.57 2.40
3519 3768 5.705441 TGAATCTTGTATTCGCCAAAAGTCT 59.295 36.000 0.00 0.00 0.00 3.24
3548 3797 6.459670 TCACAGTATGGTTGTCATATACGT 57.540 37.500 0.00 0.00 43.62 3.57
3556 3805 3.568007 TGCCTTTTCACAGTATGGTTGTC 59.432 43.478 0.00 0.00 43.62 3.18
3568 3817 9.476202 AAAGTATTTTCTTGTATGCCTTTTCAC 57.524 29.630 0.00 0.00 31.62 3.18
3573 3822 9.260002 CAAACAAAGTATTTTCTTGTATGCCTT 57.740 29.630 0.00 0.00 35.03 4.35
3601 3850 5.219739 TGGCTTAGGATCTATTCTTGGAGT 58.780 41.667 0.00 0.00 0.00 3.85
3612 3861 4.102367 GGAGATGACTTTGGCTTAGGATCT 59.898 45.833 0.00 0.00 0.00 2.75
3691 3947 0.330604 AGTGGCTCAGTAGTACCGGA 59.669 55.000 9.46 0.00 0.00 5.14
3702 3958 2.897350 TGAGTAACCCTAAGTGGCTCA 58.103 47.619 0.00 0.00 37.57 4.26
3705 3961 4.404715 TGAGTATGAGTAACCCTAAGTGGC 59.595 45.833 0.00 0.00 0.00 5.01
3717 3973 3.773119 GGTTTGACCCCTGAGTATGAGTA 59.227 47.826 0.00 0.00 30.04 2.59
3719 3975 2.840651 AGGTTTGACCCCTGAGTATGAG 59.159 50.000 0.00 0.00 39.75 2.90
3730 3986 4.149598 ACCATTGAAACTAGGTTTGACCC 58.850 43.478 0.00 0.00 39.75 4.46
3755 4011 8.057536 TCCATAACAAAATAAATAGCGGTTGT 57.942 30.769 0.00 0.00 0.00 3.32
3756 4012 8.803799 GTTCCATAACAAAATAAATAGCGGTTG 58.196 33.333 0.00 0.00 35.56 3.77
3763 4019 6.318144 TCGGCGGTTCCATAACAAAATAAATA 59.682 34.615 7.21 0.00 37.34 1.40
3783 4039 1.004918 AAGGAGGAACTGTTCGGCG 60.005 57.895 13.89 0.00 41.55 6.46
3785 4041 2.543777 TTCAAGGAGGAACTGTTCGG 57.456 50.000 13.89 0.71 41.55 4.30
3789 4045 4.536765 ACAATGTTTCAAGGAGGAACTGT 58.463 39.130 0.00 0.00 41.55 3.55
3790 4046 5.520376 AACAATGTTTCAAGGAGGAACTG 57.480 39.130 0.00 0.00 41.55 3.16
3791 4047 5.422012 ACAAACAATGTTTCAAGGAGGAACT 59.578 36.000 8.59 0.00 40.61 3.01
3792 4048 5.660460 ACAAACAATGTTTCAAGGAGGAAC 58.340 37.500 8.59 0.00 40.06 3.62
3844 4100 8.692710 TGATACGACTTGGAAGTACTAATGAAT 58.307 33.333 0.00 0.00 39.88 2.57
3850 4106 7.310664 CAAACTGATACGACTTGGAAGTACTA 58.689 38.462 0.00 0.00 39.88 1.82
3852 4108 5.163982 GCAAACTGATACGACTTGGAAGTAC 60.164 44.000 0.00 0.00 39.88 2.73
3853 4109 4.927425 GCAAACTGATACGACTTGGAAGTA 59.073 41.667 0.00 0.00 39.88 2.24
3858 4114 3.498397 ACAAGCAAACTGATACGACTTGG 59.502 43.478 0.00 0.00 37.84 3.61
3860 4116 5.510671 CAAACAAGCAAACTGATACGACTT 58.489 37.500 0.00 0.00 0.00 3.01
3867 4123 2.431782 ACCAGCAAACAAGCAAACTGAT 59.568 40.909 0.00 0.00 36.85 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.