Multiple sequence alignment - TraesCS2B01G346000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G346000 chr2B 100.000 6545 0 0 1 6545 492720184 492713640 0.000000e+00 12087.0
1 TraesCS2B01G346000 chr2A 93.594 4215 138 50 468 4628 569997319 570001455 0.000000e+00 6167.0
2 TraesCS2B01G346000 chr2A 95.833 1200 33 6 4630 5815 570001538 570002734 0.000000e+00 1923.0
3 TraesCS2B01G346000 chr2A 93.750 304 16 2 5939 6242 570002733 570003033 2.780000e-123 453.0
4 TraesCS2B01G346000 chr2A 86.811 417 32 6 1 400 569996573 569996983 1.670000e-120 444.0
5 TraesCS2B01G346000 chr2D 96.109 2596 65 14 2059 4628 420178676 420176091 0.000000e+00 4202.0
6 TraesCS2B01G346000 chr2D 90.693 1601 66 30 468 2061 420180435 420178911 0.000000e+00 2054.0
7 TraesCS2B01G346000 chr2D 91.790 1218 47 25 4630 5815 420176008 420174812 0.000000e+00 1646.0
8 TraesCS2B01G346000 chr2D 89.342 441 35 10 5939 6375 420174813 420174381 1.610000e-150 544.0
9 TraesCS2B01G346000 chr2D 88.047 343 19 8 126 447 420180764 420180423 2.860000e-103 387.0
10 TraesCS2B01G346000 chr2D 90.541 148 13 1 5814 5961 59503405 59503259 1.860000e-45 195.0
11 TraesCS2B01G346000 chr2D 100.000 35 0 0 88 122 420181125 420181091 1.520000e-06 65.8
12 TraesCS2B01G346000 chr5A 80.965 373 60 10 6106 6470 555059972 555059603 1.070000e-72 285.0
13 TraesCS2B01G346000 chr3D 80.352 341 47 12 6131 6461 61805461 61805791 2.360000e-59 241.0
14 TraesCS2B01G346000 chr3D 93.893 131 8 0 5811 5941 338674078 338674208 1.440000e-46 198.0
15 TraesCS2B01G346000 chr3D 91.667 144 11 1 5811 5953 496172752 496172895 1.440000e-46 198.0
16 TraesCS2B01G346000 chr3B 77.684 354 62 11 6131 6472 99503423 99503771 4.000000e-47 200.0
17 TraesCS2B01G346000 chrUn 93.939 132 7 1 5811 5941 11031656 11031787 1.440000e-46 198.0
18 TraesCS2B01G346000 chr7D 93.893 131 8 0 5811 5941 112696642 112696772 1.440000e-46 198.0
19 TraesCS2B01G346000 chr4D 92.754 138 9 1 5804 5940 99524679 99524816 1.440000e-46 198.0
20 TraesCS2B01G346000 chr4A 93.893 131 8 0 5811 5941 71453982 71453852 1.440000e-46 198.0
21 TraesCS2B01G346000 chr4A 93.893 131 8 0 5811 5941 352496741 352496871 1.440000e-46 198.0
22 TraesCS2B01G346000 chr6B 92.143 140 10 1 5811 5950 582866938 582867076 5.180000e-46 196.0
23 TraesCS2B01G346000 chr1B 95.455 44 2 0 5769 5812 369616378 369616335 3.270000e-08 71.3
24 TraesCS2B01G346000 chr1B 95.238 42 2 0 5773 5814 669164204 669164163 4.240000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G346000 chr2B 492713640 492720184 6544 True 12087.000000 12087 100.0000 1 6545 1 chr2B.!!$R1 6544
1 TraesCS2B01G346000 chr2A 569996573 570003033 6460 False 2246.750000 6167 92.4970 1 6242 4 chr2A.!!$F1 6241
2 TraesCS2B01G346000 chr2D 420174381 420181125 6744 True 1483.133333 4202 92.6635 88 6375 6 chr2D.!!$R2 6287

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
444 1096 0.112995 TTTCCCAGCAGTGCCTTGAT 59.887 50.0 12.58 0.00 0.00 2.57 F
1263 1939 0.036306 GGTTGGTGATCCGTGAAGGT 59.964 55.0 0.00 0.00 41.99 3.50 F
1610 2292 0.617935 TGCCCTTAGTGCTGCACATA 59.382 50.0 31.90 18.77 36.74 2.29 F
2399 3342 1.626686 TGGACCGCACCAATTTCAAT 58.373 45.0 0.00 0.00 36.96 2.57 F
3566 4528 1.198759 TTACTGGTCTGGGCCCTGAC 61.199 60.0 40.24 40.24 41.95 3.51 F
4438 5408 1.028868 GGCTGGGTTCAGTCATCAGC 61.029 60.0 0.00 0.00 44.56 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1583 2265 0.543749 GCACTAAGGGCATCCTGTCT 59.456 55.000 0.00 0.0 44.07 3.41 R
2478 3421 3.082698 TGCAACAAGACAGCACAAATC 57.917 42.857 0.00 0.0 32.55 2.17 R
2494 3437 5.072055 TCTCTGTCTTCCATTTCAATGCAA 58.928 37.500 0.00 0.0 35.08 4.08 R
4142 5112 1.875009 TCAGCAAGACTTCAGCACAG 58.125 50.000 0.88 0.0 0.00 3.66 R
4740 5791 1.002033 GCACCTTCACTTCTTGCTGTG 60.002 52.381 0.00 0.0 35.68 3.66 R
5925 7008 0.106116 ACAGATACTCCCTCCGTCCC 60.106 60.000 0.00 0.0 0.00 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.620488 TGCGAATCAAAGAAGCCCTAAT 58.380 40.909 0.00 0.00 0.00 1.73
25 26 5.376625 TGCGAATCAAAGAAGCCCTAATAT 58.623 37.500 0.00 0.00 0.00 1.28
35 36 4.532521 AGAAGCCCTAATATTAGCGACCAT 59.467 41.667 15.86 1.27 0.00 3.55
49 50 5.905480 AGCGACCATTTTGAAATGAAAAC 57.095 34.783 16.00 5.20 46.72 2.43
56 57 5.752955 CCATTTTGAAATGAAAACCAGTCGT 59.247 36.000 16.00 0.00 46.72 4.34
71 72 5.855045 ACCAGTCGTCTGAGTTTTTCTTAT 58.145 37.500 11.41 0.00 43.76 1.73
72 73 5.696724 ACCAGTCGTCTGAGTTTTTCTTATG 59.303 40.000 11.41 0.00 43.76 1.90
73 74 5.926542 CCAGTCGTCTGAGTTTTTCTTATGA 59.073 40.000 11.41 0.00 43.76 2.15
149 473 1.334869 ACACGCTTTGCTCAGGAAAAG 59.665 47.619 0.00 0.00 40.25 2.27
252 582 2.046292 TCCCATGGCATCGAACATCTA 58.954 47.619 6.09 0.00 0.00 1.98
268 598 1.371758 CTAGCGCTGTGTGACACGT 60.372 57.895 22.90 0.00 37.14 4.49
288 618 6.642950 ACACGTAGAAGAGAACAAAATCTCAG 59.357 38.462 7.04 0.00 46.73 3.35
302 632 3.947132 CTCAGACCCTGCTGCACGG 62.947 68.421 14.90 14.90 35.86 4.94
375 725 1.503818 GCCCACGCTTGAACTCGAAA 61.504 55.000 0.00 0.00 0.00 3.46
387 737 5.699097 TGAACTCGAAATTTTTGGGGTAG 57.301 39.130 1.38 0.00 29.04 3.18
390 740 1.813786 TCGAAATTTTTGGGGTAGGCG 59.186 47.619 0.00 0.00 0.00 5.52
434 1086 4.471025 TCAGTATGAGAATCTTTCCCAGCA 59.529 41.667 0.00 0.00 42.56 4.41
435 1087 4.815308 CAGTATGAGAATCTTTCCCAGCAG 59.185 45.833 0.00 0.00 39.69 4.24
436 1088 4.472833 AGTATGAGAATCTTTCCCAGCAGT 59.527 41.667 0.00 0.00 34.92 4.40
437 1089 3.063510 TGAGAATCTTTCCCAGCAGTG 57.936 47.619 0.00 0.00 34.92 3.66
438 1090 1.742268 GAGAATCTTTCCCAGCAGTGC 59.258 52.381 7.13 7.13 0.00 4.40
439 1091 0.813821 GAATCTTTCCCAGCAGTGCC 59.186 55.000 12.58 0.00 0.00 5.01
440 1092 0.407139 AATCTTTCCCAGCAGTGCCT 59.593 50.000 12.58 0.00 0.00 4.75
441 1093 0.407139 ATCTTTCCCAGCAGTGCCTT 59.593 50.000 12.58 0.00 0.00 4.35
442 1094 0.538057 TCTTTCCCAGCAGTGCCTTG 60.538 55.000 12.58 4.22 0.00 3.61
443 1095 0.538057 CTTTCCCAGCAGTGCCTTGA 60.538 55.000 12.58 2.46 0.00 3.02
444 1096 0.112995 TTTCCCAGCAGTGCCTTGAT 59.887 50.000 12.58 0.00 0.00 2.57
445 1097 0.322816 TTCCCAGCAGTGCCTTGATC 60.323 55.000 12.58 0.00 0.00 2.92
446 1098 1.203441 TCCCAGCAGTGCCTTGATCT 61.203 55.000 12.58 0.00 0.00 2.75
447 1099 0.747283 CCCAGCAGTGCCTTGATCTC 60.747 60.000 12.58 0.00 0.00 2.75
448 1100 0.252479 CCAGCAGTGCCTTGATCTCT 59.748 55.000 12.58 0.00 0.00 3.10
449 1101 1.339824 CCAGCAGTGCCTTGATCTCTT 60.340 52.381 12.58 0.00 0.00 2.85
450 1102 2.434428 CAGCAGTGCCTTGATCTCTTT 58.566 47.619 12.58 0.00 0.00 2.52
451 1103 2.818432 CAGCAGTGCCTTGATCTCTTTT 59.182 45.455 12.58 0.00 0.00 2.27
452 1104 3.255149 CAGCAGTGCCTTGATCTCTTTTT 59.745 43.478 12.58 0.00 0.00 1.94
591 1246 4.063967 CTGGTAGTGACGGCGCCA 62.064 66.667 28.98 3.37 0.00 5.69
642 1301 1.277326 AGCATATGTACGTGTGTGCG 58.723 50.000 12.72 0.00 37.63 5.34
644 1303 1.392168 GCATATGTACGTGTGTGCGTT 59.608 47.619 12.72 0.00 43.04 4.84
645 1304 2.534150 GCATATGTACGTGTGTGCGTTC 60.534 50.000 12.72 0.00 43.04 3.95
853 1521 1.275471 CGAGAAAACGTGCTCGCTCA 61.275 55.000 18.44 0.00 45.97 4.26
1197 1872 4.202545 ACCGGTACTACTCCTATGCTGTAT 60.203 45.833 4.49 0.00 0.00 2.29
1198 1873 4.395542 CCGGTACTACTCCTATGCTGTATC 59.604 50.000 0.00 0.00 0.00 2.24
1199 1874 5.001874 CGGTACTACTCCTATGCTGTATCA 58.998 45.833 0.00 0.00 0.00 2.15
1200 1875 5.122554 CGGTACTACTCCTATGCTGTATCAG 59.877 48.000 0.00 0.00 34.12 2.90
1201 1876 6.005198 GGTACTACTCCTATGCTGTATCAGT 58.995 44.000 0.00 0.00 33.43 3.41
1202 1877 7.166851 GGTACTACTCCTATGCTGTATCAGTA 58.833 42.308 0.00 0.00 33.43 2.74
1203 1878 7.830201 GGTACTACTCCTATGCTGTATCAGTAT 59.170 40.741 5.76 5.76 39.84 2.12
1255 1931 0.537143 TGCTGTGTGGTTGGTGATCC 60.537 55.000 0.00 0.00 0.00 3.36
1263 1939 0.036306 GGTTGGTGATCCGTGAAGGT 59.964 55.000 0.00 0.00 41.99 3.50
1335 2011 1.565305 GATCTGCGTTCTTGCTCGAT 58.435 50.000 0.00 0.00 35.36 3.59
1432 2108 7.147497 TGCCCATCTCTTATGTTTCTCTGAATA 60.147 37.037 0.00 0.00 0.00 1.75
1442 2118 4.225942 TGTTTCTCTGAATATGAGGCCAGT 59.774 41.667 5.01 0.00 32.78 4.00
1477 2153 9.823647 CCTCAAGTTAGATGTATTACATGTTCT 57.176 33.333 13.93 8.54 39.27 3.01
1493 2169 7.807977 ACATGTTCTCACAAAAGTTAGATGT 57.192 32.000 0.00 0.00 36.16 3.06
1549 2225 4.262463 GGAGTTACCATTATCTCATCGCCA 60.262 45.833 0.00 0.00 38.79 5.69
1566 2242 1.446907 CCATGTGAGTGAAGCTGGTC 58.553 55.000 0.00 0.00 0.00 4.02
1580 2262 4.748144 GGTCTTGGGGGCTGCAGG 62.748 72.222 17.12 0.00 0.00 4.85
1581 2263 3.650950 GTCTTGGGGGCTGCAGGA 61.651 66.667 17.12 0.00 0.00 3.86
1582 2264 3.650950 TCTTGGGGGCTGCAGGAC 61.651 66.667 17.12 0.00 0.00 3.85
1583 2265 3.970410 CTTGGGGGCTGCAGGACA 61.970 66.667 17.12 0.00 0.00 4.02
1610 2292 0.617935 TGCCCTTAGTGCTGCACATA 59.382 50.000 31.90 18.77 36.74 2.29
1663 2354 9.500785 TCGGATTATACATCTTTATTGCATCAA 57.499 29.630 0.00 0.00 0.00 2.57
1688 2379 7.595819 ATGAGCTCTATAAGTGCTAGAAACT 57.404 36.000 16.19 0.00 44.15 2.66
1774 2470 4.522789 AGGTTTGGTAGTTGGTTAGCAATG 59.477 41.667 0.00 0.00 39.80 2.82
1779 2475 4.759693 TGGTAGTTGGTTAGCAATGACTTG 59.240 41.667 0.00 0.00 35.36 3.16
1864 2565 4.819105 ACCATTGTTCGTAATCCAGAGA 57.181 40.909 0.00 0.00 0.00 3.10
2002 2703 6.257193 GGAATTCAAATTCAGCATCCAATCAC 59.743 38.462 15.35 0.00 45.10 3.06
2007 2708 6.487668 TCAAATTCAGCATCCAATCACGATAT 59.512 34.615 0.00 0.00 0.00 1.63
2069 3007 3.372206 CCTGCTGAGATTTAAACTCCACG 59.628 47.826 12.35 0.00 33.95 4.94
2279 3221 4.611943 CATGTTAGTCTGTCATACTCCGG 58.388 47.826 0.00 0.00 0.00 5.14
2356 3299 6.431198 TTCAGAACAAGGTGTTTCTGTTAC 57.569 37.500 10.32 0.00 41.28 2.50
2385 3328 4.765273 ACCAATTTTGAAACTGTTGGACC 58.235 39.130 17.51 0.00 41.36 4.46
2399 3342 1.626686 TGGACCGCACCAATTTCAAT 58.373 45.000 0.00 0.00 36.96 2.57
2478 3421 2.356135 AGCATGCGTAAGGTTTACCAG 58.644 47.619 13.01 0.00 38.89 4.00
2494 3437 2.936202 ACCAGATTTGTGCTGTCTTGT 58.064 42.857 0.00 0.00 0.00 3.16
2567 3510 6.006449 AGTTTCCTATTGTCACTGCTTTGAT 58.994 36.000 0.00 0.00 0.00 2.57
2580 3523 8.243426 GTCACTGCTTTGATTAATGGATGTTTA 58.757 33.333 0.00 0.00 0.00 2.01
2741 3684 7.867403 GCGGACATGGTATTTTCAATTATTCAT 59.133 33.333 0.00 0.00 0.00 2.57
3131 4077 8.110860 TCTTTTCTTCTTCCATGGTATTGAAC 57.889 34.615 12.58 0.00 0.00 3.18
3179 4125 6.981559 GCTAAACCACTGGTCATTTGTTTTAA 59.018 34.615 0.00 0.00 33.12 1.52
3500 4462 1.896465 AGAACTTGCTTAGAGCTCGGT 59.104 47.619 8.37 0.00 42.97 4.69
3566 4528 1.198759 TTACTGGTCTGGGCCCTGAC 61.199 60.000 40.24 40.24 41.95 3.51
3654 4616 8.429493 AATTGTCATATGCTCATGGATATACG 57.571 34.615 0.00 0.00 35.46 3.06
3658 4620 6.699204 GTCATATGCTCATGGATATACGAAGG 59.301 42.308 0.00 0.00 35.46 3.46
3843 4813 1.202639 TGTGATGTTCTGTGCTTCGGT 60.203 47.619 0.00 0.00 0.00 4.69
4142 5112 6.442513 AGTCTTAGCTAATTTGTGGATTGC 57.557 37.500 6.64 0.00 0.00 3.56
4349 5319 4.090761 TCACAGGAGAAAATTGCAGAGT 57.909 40.909 0.00 0.00 0.00 3.24
4417 5387 1.143073 GACCCACTGGAAGAAGGTTGT 59.857 52.381 0.00 0.00 41.66 3.32
4438 5408 1.028868 GGCTGGGTTCAGTCATCAGC 61.029 60.000 0.00 0.00 44.56 4.26
4512 5482 9.935241 ATGCAAATATGTACATTTTGGTAAACA 57.065 25.926 26.68 20.61 32.33 2.83
4570 5540 5.183331 CCGATAATCCCTCTTCGAGATAACA 59.817 44.000 0.00 0.00 33.59 2.41
4628 5598 6.131544 TGACTTTCTCTTTTGCAAACTACC 57.868 37.500 12.39 0.00 0.00 3.18
4681 5732 4.324331 GCAACCACCTTAGAGTTCCCTTAT 60.324 45.833 0.00 0.00 0.00 1.73
5085 6142 3.601443 ATCGTTCCCTTGACTTCTCTG 57.399 47.619 0.00 0.00 0.00 3.35
5174 6231 4.860907 GCATTGCAAAGGTAGATTCAAGTG 59.139 41.667 1.71 0.00 0.00 3.16
5179 6248 0.905357 AGGTAGATTCAAGTGCGCCT 59.095 50.000 4.18 0.00 0.00 5.52
5193 6262 2.095466 GTGCGCCTGTAAATTTGTAGCA 60.095 45.455 4.18 1.68 0.00 3.49
5310 6379 3.883744 CTGCTCGCAACCGACCCTT 62.884 63.158 0.00 0.00 38.82 3.95
5417 6487 1.529010 CAAACTGCACTGCCCCTGA 60.529 57.895 0.00 0.00 0.00 3.86
5425 6495 1.065126 GCACTGCCCCTGAAAGTATCT 60.065 52.381 0.00 0.00 0.00 1.98
5641 6724 2.849880 TGCTTTCGCAATAAGCCATC 57.150 45.000 10.73 0.00 45.73 3.51
5666 6749 4.157656 TGTGGCAAACTTGGTTATGATAGC 59.842 41.667 0.00 0.00 0.00 2.97
5748 6831 4.446857 TTACGTTCTTCTGCTTTCGTTG 57.553 40.909 0.00 0.00 33.70 4.10
5816 6899 2.044123 GCTGGCTGCTTGGTTATACT 57.956 50.000 9.31 0.00 38.95 2.12
5817 6900 1.943340 GCTGGCTGCTTGGTTATACTC 59.057 52.381 9.31 0.00 38.95 2.59
5818 6901 2.565841 CTGGCTGCTTGGTTATACTCC 58.434 52.381 0.00 0.00 0.00 3.85
5819 6902 1.211949 TGGCTGCTTGGTTATACTCCC 59.788 52.381 0.00 0.00 0.00 4.30
5820 6903 1.490910 GGCTGCTTGGTTATACTCCCT 59.509 52.381 0.00 0.00 0.00 4.20
5821 6904 2.485657 GGCTGCTTGGTTATACTCCCTC 60.486 54.545 0.00 0.00 0.00 4.30
5822 6905 2.485657 GCTGCTTGGTTATACTCCCTCC 60.486 54.545 0.00 0.00 0.00 4.30
5823 6906 1.760613 TGCTTGGTTATACTCCCTCCG 59.239 52.381 0.00 0.00 0.00 4.63
5824 6907 1.761198 GCTTGGTTATACTCCCTCCGT 59.239 52.381 0.00 0.00 0.00 4.69
5825 6908 2.223994 GCTTGGTTATACTCCCTCCGTC 60.224 54.545 0.00 0.00 0.00 4.79
5826 6909 3.297736 CTTGGTTATACTCCCTCCGTCT 58.702 50.000 0.00 0.00 0.00 4.18
5827 6910 2.941480 TGGTTATACTCCCTCCGTCTC 58.059 52.381 0.00 0.00 0.00 3.36
5828 6911 2.242965 TGGTTATACTCCCTCCGTCTCA 59.757 50.000 0.00 0.00 0.00 3.27
5829 6912 3.294214 GGTTATACTCCCTCCGTCTCAA 58.706 50.000 0.00 0.00 0.00 3.02
5830 6913 3.703052 GGTTATACTCCCTCCGTCTCAAA 59.297 47.826 0.00 0.00 0.00 2.69
5831 6914 4.161001 GGTTATACTCCCTCCGTCTCAAAA 59.839 45.833 0.00 0.00 0.00 2.44
5832 6915 5.163332 GGTTATACTCCCTCCGTCTCAAAAT 60.163 44.000 0.00 0.00 0.00 1.82
5833 6916 6.346896 GTTATACTCCCTCCGTCTCAAAATT 58.653 40.000 0.00 0.00 0.00 1.82
5834 6917 3.336138 ACTCCCTCCGTCTCAAAATTC 57.664 47.619 0.00 0.00 0.00 2.17
5835 6918 2.907042 ACTCCCTCCGTCTCAAAATTCT 59.093 45.455 0.00 0.00 0.00 2.40
5836 6919 3.328050 ACTCCCTCCGTCTCAAAATTCTT 59.672 43.478 0.00 0.00 0.00 2.52
5837 6920 3.674997 TCCCTCCGTCTCAAAATTCTTG 58.325 45.455 0.00 0.00 0.00 3.02
5838 6921 3.072476 TCCCTCCGTCTCAAAATTCTTGT 59.928 43.478 0.00 0.00 0.00 3.16
5839 6922 3.437049 CCCTCCGTCTCAAAATTCTTGTC 59.563 47.826 0.00 0.00 0.00 3.18
5840 6923 4.319177 CCTCCGTCTCAAAATTCTTGTCT 58.681 43.478 0.00 0.00 0.00 3.41
5841 6924 4.757149 CCTCCGTCTCAAAATTCTTGTCTT 59.243 41.667 0.00 0.00 0.00 3.01
5842 6925 5.932303 CCTCCGTCTCAAAATTCTTGTCTTA 59.068 40.000 0.00 0.00 0.00 2.10
5843 6926 6.091441 CCTCCGTCTCAAAATTCTTGTCTTAG 59.909 42.308 0.00 0.00 0.00 2.18
5844 6927 6.755206 TCCGTCTCAAAATTCTTGTCTTAGA 58.245 36.000 0.00 0.00 0.00 2.10
5845 6928 7.386851 TCCGTCTCAAAATTCTTGTCTTAGAT 58.613 34.615 0.00 0.00 0.00 1.98
5846 6929 7.878127 TCCGTCTCAAAATTCTTGTCTTAGATT 59.122 33.333 0.00 0.00 0.00 2.40
5847 6930 9.151471 CCGTCTCAAAATTCTTGTCTTAGATTA 57.849 33.333 0.00 0.00 0.00 1.75
5858 6941 9.622004 TTCTTGTCTTAGATTAGTCTAAACACG 57.378 33.333 15.71 14.68 44.18 4.49
5859 6942 8.242053 TCTTGTCTTAGATTAGTCTAAACACGG 58.758 37.037 15.71 13.12 44.18 4.94
5860 6943 7.692460 TGTCTTAGATTAGTCTAAACACGGA 57.308 36.000 8.81 0.73 44.18 4.69
5861 6944 8.289939 TGTCTTAGATTAGTCTAAACACGGAT 57.710 34.615 8.81 0.00 44.18 4.18
5862 6945 8.188799 TGTCTTAGATTAGTCTAAACACGGATG 58.811 37.037 8.81 0.00 44.18 3.51
5863 6946 8.189460 GTCTTAGATTAGTCTAAACACGGATGT 58.811 37.037 8.81 0.00 44.18 3.06
5864 6947 9.399797 TCTTAGATTAGTCTAAACACGGATGTA 57.600 33.333 8.81 0.00 44.18 2.29
5867 6950 8.466617 AGATTAGTCTAAACACGGATGTATCT 57.533 34.615 0.00 0.00 32.86 1.98
5868 6951 9.570468 AGATTAGTCTAAACACGGATGTATCTA 57.430 33.333 0.00 0.00 32.86 1.98
5869 6952 9.828852 GATTAGTCTAAACACGGATGTATCTAG 57.171 37.037 0.00 0.00 38.45 2.43
5870 6953 8.743085 TTAGTCTAAACACGGATGTATCTAGT 57.257 34.615 0.00 0.00 38.45 2.57
5871 6954 9.836864 TTAGTCTAAACACGGATGTATCTAGTA 57.163 33.333 0.00 0.00 38.45 1.82
5872 6955 8.152309 AGTCTAAACACGGATGTATCTAGTAC 57.848 38.462 0.00 0.00 38.45 2.73
5873 6956 7.992033 AGTCTAAACACGGATGTATCTAGTACT 59.008 37.037 0.00 0.00 38.45 2.73
5874 6957 9.265901 GTCTAAACACGGATGTATCTAGTACTA 57.734 37.037 1.89 1.89 38.45 1.82
5875 6958 9.836864 TCTAAACACGGATGTATCTAGTACTAA 57.163 33.333 3.76 0.00 38.45 2.24
5878 6961 6.968250 ACACGGATGTATCTAGTACTAAAGC 58.032 40.000 3.76 0.00 37.26 3.51
5879 6962 6.544931 ACACGGATGTATCTAGTACTAAAGCA 59.455 38.462 3.76 1.89 37.26 3.91
5880 6963 7.230913 ACACGGATGTATCTAGTACTAAAGCAT 59.769 37.037 3.76 6.38 37.26 3.79
5881 6964 7.539022 CACGGATGTATCTAGTACTAAAGCATG 59.461 40.741 3.76 0.00 34.27 4.06
5882 6965 7.447545 ACGGATGTATCTAGTACTAAAGCATGA 59.552 37.037 3.76 0.00 34.27 3.07
5883 6966 7.751348 CGGATGTATCTAGTACTAAAGCATGAC 59.249 40.741 3.76 0.00 34.27 3.06
5884 6967 8.798402 GGATGTATCTAGTACTAAAGCATGACT 58.202 37.037 3.76 0.00 34.27 3.41
5886 6969 9.973450 ATGTATCTAGTACTAAAGCATGACTTG 57.027 33.333 3.76 0.00 34.90 3.16
5887 6970 9.185680 TGTATCTAGTACTAAAGCATGACTTGA 57.814 33.333 3.76 0.00 34.90 3.02
5891 6974 9.185680 TCTAGTACTAAAGCATGACTTGATACA 57.814 33.333 3.76 0.00 39.09 2.29
5892 6975 9.973450 CTAGTACTAAAGCATGACTTGATACAT 57.027 33.333 3.76 0.00 39.09 2.29
5893 6976 8.879342 AGTACTAAAGCATGACTTGATACATC 57.121 34.615 0.00 0.00 39.09 3.06
5894 6977 8.700051 AGTACTAAAGCATGACTTGATACATCT 58.300 33.333 0.00 0.00 39.09 2.90
5895 6978 9.967346 GTACTAAAGCATGACTTGATACATCTA 57.033 33.333 0.00 0.00 39.09 1.98
5927 7010 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
5928 7011 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
5929 7012 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
5930 7013 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
5931 7014 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
5932 7015 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
5933 7016 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
5934 7017 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
5935 7018 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
5936 7019 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
5937 7020 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
5938 7021 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
5939 7022 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
5965 7048 6.017109 TCTGTTTATGTTCTTTTGGTGAGAGC 60.017 38.462 0.00 0.00 0.00 4.09
6024 7107 2.355007 GGGTGGGAAATTTTGATGCCTG 60.355 50.000 0.00 0.00 0.00 4.85
6064 7147 0.976641 ACGTGAGAATGAGGGCTTCA 59.023 50.000 0.39 0.39 40.85 3.02
6104 7188 2.290705 ACGGTAAATCAAAGGGGGTCAG 60.291 50.000 0.00 0.00 0.00 3.51
6122 7206 5.106673 GGGTCAGTGCTAAATGTTAGTTCAC 60.107 44.000 0.00 0.00 0.00 3.18
6129 7213 5.080068 GCTAAATGTTAGTTCACGTTGCTC 58.920 41.667 0.00 0.00 0.00 4.26
6150 7234 1.600663 CGATACATGGCGGTCTGAGAC 60.601 57.143 3.47 3.47 0.00 3.36
6211 7295 1.096967 TTGGCTGGACATATGCTGCG 61.097 55.000 1.58 0.00 41.27 5.18
6249 7333 2.564721 GGCGCTCTTGTTTTGGGCT 61.565 57.895 7.64 0.00 39.20 5.19
6251 7335 0.596082 GCGCTCTTGTTTTGGGCTTA 59.404 50.000 0.00 0.00 36.83 3.09
6252 7336 1.401539 GCGCTCTTGTTTTGGGCTTAG 60.402 52.381 0.00 0.00 36.83 2.18
6253 7337 2.151202 CGCTCTTGTTTTGGGCTTAGA 58.849 47.619 0.00 0.00 0.00 2.10
6254 7338 2.552315 CGCTCTTGTTTTGGGCTTAGAA 59.448 45.455 0.00 0.00 0.00 2.10
6256 7340 3.821033 GCTCTTGTTTTGGGCTTAGAAGA 59.179 43.478 0.00 0.00 0.00 2.87
6258 7342 5.648092 GCTCTTGTTTTGGGCTTAGAAGATA 59.352 40.000 0.00 0.00 0.00 1.98
6259 7343 6.319911 GCTCTTGTTTTGGGCTTAGAAGATAT 59.680 38.462 0.00 0.00 0.00 1.63
6261 7345 8.281212 TCTTGTTTTGGGCTTAGAAGATATTC 57.719 34.615 0.00 0.00 0.00 1.75
6262 7346 7.888021 TCTTGTTTTGGGCTTAGAAGATATTCA 59.112 33.333 2.42 0.00 0.00 2.57
6263 7347 8.415950 TTGTTTTGGGCTTAGAAGATATTCAA 57.584 30.769 2.42 0.00 0.00 2.69
6264 7348 8.055279 TGTTTTGGGCTTAGAAGATATTCAAG 57.945 34.615 2.42 5.57 0.00 3.02
6265 7349 7.669722 TGTTTTGGGCTTAGAAGATATTCAAGT 59.330 33.333 2.42 0.00 0.00 3.16
6266 7350 8.523658 GTTTTGGGCTTAGAAGATATTCAAGTT 58.476 33.333 2.42 0.00 0.00 2.66
6267 7351 8.650143 TTTGGGCTTAGAAGATATTCAAGTTT 57.350 30.769 2.42 0.00 0.00 2.66
6268 7352 7.865706 TGGGCTTAGAAGATATTCAAGTTTC 57.134 36.000 2.42 0.94 0.00 2.78
6269 7353 7.633789 TGGGCTTAGAAGATATTCAAGTTTCT 58.366 34.615 2.42 0.00 33.15 2.52
6270 7354 8.768397 TGGGCTTAGAAGATATTCAAGTTTCTA 58.232 33.333 2.42 0.00 31.19 2.10
6271 7355 9.614792 GGGCTTAGAAGATATTCAAGTTTCTAA 57.385 33.333 2.42 5.27 37.76 2.10
6298 7382 6.605471 AAAGATGATGTTTAAACCCCTTCC 57.395 37.500 15.59 1.53 0.00 3.46
6310 7394 2.219571 ACCCCTTCCTCTAGCTCTAGT 58.780 52.381 0.00 0.00 34.84 2.57
6327 7411 5.683302 GCTCTAGTTCTTGTTTCTTTTGTGC 59.317 40.000 0.00 0.00 0.00 4.57
6332 7416 5.634859 AGTTCTTGTTTCTTTTGTGCTTGTG 59.365 36.000 0.00 0.00 0.00 3.33
6348 7433 5.351189 GTGCTTGTGTTTGATTTTTCTTGGT 59.649 36.000 0.00 0.00 0.00 3.67
6375 7460 7.837202 TCCTTAATTAACCAAGACGTGTATG 57.163 36.000 0.00 0.00 0.00 2.39
6376 7461 6.819649 TCCTTAATTAACCAAGACGTGTATGG 59.180 38.462 0.00 2.24 40.16 2.74
6382 7467 4.561735 ACCAAGACGTGTATGGTTTTTG 57.438 40.909 11.86 0.00 44.92 2.44
6383 7468 4.200874 ACCAAGACGTGTATGGTTTTTGA 58.799 39.130 11.86 0.00 44.92 2.69
6384 7469 4.825085 ACCAAGACGTGTATGGTTTTTGAT 59.175 37.500 11.86 0.00 44.92 2.57
6385 7470 5.048991 ACCAAGACGTGTATGGTTTTTGATC 60.049 40.000 11.86 0.00 44.92 2.92
6386 7471 5.390613 CAAGACGTGTATGGTTTTTGATCC 58.609 41.667 0.00 0.00 0.00 3.36
6387 7472 3.682858 AGACGTGTATGGTTTTTGATCCG 59.317 43.478 0.00 0.00 0.00 4.18
6388 7473 2.745281 ACGTGTATGGTTTTTGATCCGG 59.255 45.455 0.00 0.00 0.00 5.14
6389 7474 2.745281 CGTGTATGGTTTTTGATCCGGT 59.255 45.455 0.00 0.00 0.00 5.28
6390 7475 3.189702 CGTGTATGGTTTTTGATCCGGTT 59.810 43.478 0.00 0.00 0.00 4.44
6391 7476 4.320641 CGTGTATGGTTTTTGATCCGGTTT 60.321 41.667 0.00 0.00 0.00 3.27
6392 7477 5.158494 GTGTATGGTTTTTGATCCGGTTTC 58.842 41.667 0.00 0.09 0.00 2.78
6393 7478 3.953712 ATGGTTTTTGATCCGGTTTCC 57.046 42.857 0.00 0.00 0.00 3.13
6394 7479 1.964933 TGGTTTTTGATCCGGTTTCCC 59.035 47.619 0.00 0.00 0.00 3.97
6395 7480 2.244695 GGTTTTTGATCCGGTTTCCCT 58.755 47.619 0.00 0.00 0.00 4.20
6396 7481 2.230508 GGTTTTTGATCCGGTTTCCCTC 59.769 50.000 0.00 0.00 0.00 4.30
6397 7482 1.816074 TTTTGATCCGGTTTCCCTCG 58.184 50.000 0.00 0.00 0.00 4.63
6398 7483 0.688487 TTTGATCCGGTTTCCCTCGT 59.312 50.000 0.00 0.00 0.00 4.18
6399 7484 0.688487 TTGATCCGGTTTCCCTCGTT 59.312 50.000 0.00 0.00 0.00 3.85
6400 7485 1.559368 TGATCCGGTTTCCCTCGTTA 58.441 50.000 0.00 0.00 0.00 3.18
6401 7486 1.901159 TGATCCGGTTTCCCTCGTTAA 59.099 47.619 0.00 0.00 0.00 2.01
6402 7487 2.502538 TGATCCGGTTTCCCTCGTTAAT 59.497 45.455 0.00 0.00 0.00 1.40
6403 7488 3.054948 TGATCCGGTTTCCCTCGTTAATT 60.055 43.478 0.00 0.00 0.00 1.40
6404 7489 2.702261 TCCGGTTTCCCTCGTTAATTG 58.298 47.619 0.00 0.00 0.00 2.32
6405 7490 1.741145 CCGGTTTCCCTCGTTAATTGG 59.259 52.381 0.00 0.00 0.00 3.16
6406 7491 2.616001 CCGGTTTCCCTCGTTAATTGGA 60.616 50.000 0.00 0.00 0.00 3.53
6407 7492 3.275999 CGGTTTCCCTCGTTAATTGGAT 58.724 45.455 0.00 0.00 0.00 3.41
6408 7493 3.311596 CGGTTTCCCTCGTTAATTGGATC 59.688 47.826 0.00 0.00 0.00 3.36
6409 7494 4.266714 GGTTTCCCTCGTTAATTGGATCA 58.733 43.478 0.00 0.00 0.00 2.92
6410 7495 4.703093 GGTTTCCCTCGTTAATTGGATCAA 59.297 41.667 0.00 0.00 0.00 2.57
6411 7496 5.392703 GGTTTCCCTCGTTAATTGGATCAAC 60.393 44.000 0.00 0.00 0.00 3.18
6412 7497 4.837093 TCCCTCGTTAATTGGATCAACT 57.163 40.909 0.00 0.00 0.00 3.16
6413 7498 4.766375 TCCCTCGTTAATTGGATCAACTC 58.234 43.478 0.00 0.00 0.00 3.01
6414 7499 4.469945 TCCCTCGTTAATTGGATCAACTCT 59.530 41.667 0.00 0.00 0.00 3.24
6415 7500 5.045869 TCCCTCGTTAATTGGATCAACTCTT 60.046 40.000 0.00 0.00 0.00 2.85
6416 7501 5.294552 CCCTCGTTAATTGGATCAACTCTTC 59.705 44.000 0.00 0.00 0.00 2.87
6417 7502 5.874810 CCTCGTTAATTGGATCAACTCTTCA 59.125 40.000 0.00 0.00 0.00 3.02
6418 7503 6.540189 CCTCGTTAATTGGATCAACTCTTCAT 59.460 38.462 0.00 0.00 0.00 2.57
6419 7504 7.066284 CCTCGTTAATTGGATCAACTCTTCATT 59.934 37.037 0.00 0.00 0.00 2.57
6420 7505 8.335532 TCGTTAATTGGATCAACTCTTCATTT 57.664 30.769 0.00 0.00 0.00 2.32
6421 7506 9.443323 TCGTTAATTGGATCAACTCTTCATTTA 57.557 29.630 0.00 0.00 0.00 1.40
6439 7524 7.654022 TCATTTAATGAAATAGTGGGAACCC 57.346 36.000 5.03 2.46 42.49 4.11
6440 7525 7.418378 TCATTTAATGAAATAGTGGGAACCCT 58.582 34.615 5.03 0.00 42.49 4.34
6441 7526 7.559897 TCATTTAATGAAATAGTGGGAACCCTC 59.440 37.037 5.03 7.60 42.49 4.30
6442 7527 6.839134 ATTTAATGAAATAGTGGGAACCCTCC 59.161 38.462 11.38 2.13 40.02 4.30
6443 7528 8.340814 ATTTAATGAAATAGTGGGAACCCTCCG 61.341 40.741 11.38 0.00 40.02 4.63
6450 7535 3.787001 GGAACCCTCCGCCCTCTG 61.787 72.222 0.00 0.00 30.03 3.35
6451 7536 2.683933 GAACCCTCCGCCCTCTGA 60.684 66.667 0.00 0.00 0.00 3.27
6452 7537 3.003763 AACCCTCCGCCCTCTGAC 61.004 66.667 0.00 0.00 0.00 3.51
6455 7540 3.522731 CCTCCGCCCTCTGACGAG 61.523 72.222 0.00 0.00 37.01 4.18
6463 7548 4.097218 CTCTGACGAGGTCCCACA 57.903 61.111 0.00 0.00 33.51 4.17
6464 7549 2.351777 CTCTGACGAGGTCCCACAA 58.648 57.895 0.00 0.00 33.51 3.33
6465 7550 0.679505 CTCTGACGAGGTCCCACAAA 59.320 55.000 0.00 0.00 33.51 2.83
6466 7551 1.070134 CTCTGACGAGGTCCCACAAAA 59.930 52.381 0.00 0.00 33.51 2.44
6467 7552 1.487142 TCTGACGAGGTCCCACAAAAA 59.513 47.619 0.00 0.00 0.00 1.94
6486 7571 2.930826 AAAGAGAACGAAGGCTTCCA 57.069 45.000 20.97 0.00 0.00 3.53
6487 7572 3.425162 AAAGAGAACGAAGGCTTCCAT 57.575 42.857 20.97 10.22 0.00 3.41
6488 7573 2.393271 AGAGAACGAAGGCTTCCATG 57.607 50.000 20.97 10.08 0.00 3.66
6489 7574 0.729690 GAGAACGAAGGCTTCCATGC 59.270 55.000 20.97 8.70 0.00 4.06
6490 7575 0.036732 AGAACGAAGGCTTCCATGCA 59.963 50.000 20.97 0.00 34.04 3.96
6491 7576 0.881118 GAACGAAGGCTTCCATGCAA 59.119 50.000 20.97 0.00 34.04 4.08
6492 7577 1.269448 GAACGAAGGCTTCCATGCAAA 59.731 47.619 20.97 0.00 34.04 3.68
6493 7578 0.883833 ACGAAGGCTTCCATGCAAAG 59.116 50.000 20.97 7.25 34.04 2.77
6494 7579 0.883833 CGAAGGCTTCCATGCAAAGT 59.116 50.000 20.97 0.00 34.04 2.66
6495 7580 1.270550 CGAAGGCTTCCATGCAAAGTT 59.729 47.619 20.97 0.00 34.04 2.66
6496 7581 2.288395 CGAAGGCTTCCATGCAAAGTTT 60.288 45.455 20.97 0.00 34.04 2.66
6497 7582 2.825861 AGGCTTCCATGCAAAGTTTG 57.174 45.000 11.41 11.41 34.04 2.93
6498 7583 2.041701 AGGCTTCCATGCAAAGTTTGT 58.958 42.857 16.70 0.00 34.04 2.83
6499 7584 2.137523 GGCTTCCATGCAAAGTTTGTG 58.862 47.619 16.70 8.16 34.04 3.33
6500 7585 2.224018 GGCTTCCATGCAAAGTTTGTGA 60.224 45.455 16.70 4.86 34.04 3.58
6501 7586 3.456280 GCTTCCATGCAAAGTTTGTGAA 58.544 40.909 16.70 12.55 0.00 3.18
6502 7587 3.870419 GCTTCCATGCAAAGTTTGTGAAA 59.130 39.130 16.70 0.00 0.00 2.69
6503 7588 4.332268 GCTTCCATGCAAAGTTTGTGAAAA 59.668 37.500 16.70 5.89 0.00 2.29
6504 7589 5.163774 GCTTCCATGCAAAGTTTGTGAAAAA 60.164 36.000 16.70 6.19 0.00 1.94
6505 7590 6.458615 GCTTCCATGCAAAGTTTGTGAAAAAT 60.459 34.615 16.70 0.14 0.00 1.82
6506 7591 6.360844 TCCATGCAAAGTTTGTGAAAAATG 57.639 33.333 16.70 10.52 0.00 2.32
6507 7592 6.111382 TCCATGCAAAGTTTGTGAAAAATGA 58.889 32.000 16.70 1.68 0.00 2.57
6508 7593 6.766944 TCCATGCAAAGTTTGTGAAAAATGAT 59.233 30.769 16.70 0.00 0.00 2.45
6509 7594 6.853872 CCATGCAAAGTTTGTGAAAAATGATG 59.146 34.615 16.70 5.88 0.00 3.07
6510 7595 7.254829 CCATGCAAAGTTTGTGAAAAATGATGA 60.255 33.333 16.70 0.00 0.00 2.92
6511 7596 7.789273 TGCAAAGTTTGTGAAAAATGATGAT 57.211 28.000 16.70 0.00 0.00 2.45
6512 7597 8.883954 TGCAAAGTTTGTGAAAAATGATGATA 57.116 26.923 16.70 0.00 0.00 2.15
6513 7598 9.491675 TGCAAAGTTTGTGAAAAATGATGATAT 57.508 25.926 16.70 0.00 0.00 1.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 7.522374 GCTAATATTAGGGCTTCTTTGATTCG 58.478 38.462 21.30 0.00 0.00 3.34
16 17 5.472137 TCAAAATGGTCGCTAATATTAGGGC 59.528 40.000 26.71 21.77 41.78 5.19
23 24 9.134734 GTTTTCATTTCAAAATGGTCGCTAATA 57.865 29.630 13.88 0.00 44.51 0.98
25 26 6.422400 GGTTTTCATTTCAAAATGGTCGCTAA 59.578 34.615 13.88 0.00 44.51 3.09
35 36 6.033341 CAGACGACTGGTTTTCATTTCAAAA 58.967 36.000 7.02 0.00 40.14 2.44
49 50 5.926542 TCATAAGAAAAACTCAGACGACTGG 59.073 40.000 14.76 8.19 43.60 4.00
149 473 3.731867 GCATTCAACGTCATTGGATCACC 60.732 47.826 0.00 0.00 33.84 4.02
252 582 1.371758 CTACGTGTCACACAGCGCT 60.372 57.895 2.64 2.64 33.40 5.92
268 598 6.498651 AGGGTCTGAGATTTTGTTCTCTTCTA 59.501 38.462 3.41 0.00 42.22 2.10
312 642 1.709203 CTCGTCTTGTCGTTCGTTCTG 59.291 52.381 0.00 0.00 0.00 3.02
318 659 1.775962 GCTGCTCGTCTTGTCGTTC 59.224 57.895 0.00 0.00 0.00 3.95
322 663 3.482783 GGCGCTGCTCGTCTTGTC 61.483 66.667 7.64 0.00 40.20 3.18
349 699 2.419057 TTCAAGCGTGGGCATTGCAC 62.419 55.000 11.39 7.60 43.41 4.57
353 703 1.577328 CGAGTTCAAGCGTGGGCATT 61.577 55.000 0.00 0.00 43.41 3.56
354 704 2.034879 CGAGTTCAAGCGTGGGCAT 61.035 57.895 0.00 0.00 43.41 4.40
355 705 2.652382 TTCGAGTTCAAGCGTGGGCA 62.652 55.000 0.00 0.00 43.41 5.36
356 706 1.503818 TTTCGAGTTCAAGCGTGGGC 61.504 55.000 0.00 0.00 40.37 5.36
357 707 1.156736 ATTTCGAGTTCAAGCGTGGG 58.843 50.000 0.00 0.00 0.00 4.61
360 710 4.041723 CCAAAAATTTCGAGTTCAAGCGT 58.958 39.130 0.00 0.00 0.00 5.07
375 725 4.606210 AGTATTTCGCCTACCCCAAAAAT 58.394 39.130 0.00 0.00 0.00 1.82
387 737 9.134734 TGATTTTGATGTTTAAAGTATTTCGCC 57.865 29.630 0.00 0.00 40.09 5.54
414 1065 4.574013 CACTGCTGGGAAAGATTCTCATAC 59.426 45.833 0.00 0.00 39.92 2.39
428 1080 0.747283 GAGATCAAGGCACTGCTGGG 60.747 60.000 0.00 0.00 40.86 4.45
429 1081 0.252479 AGAGATCAAGGCACTGCTGG 59.748 55.000 0.00 0.00 40.86 4.85
453 1105 3.312736 AGGCACTTCCCTCAAGAAAAA 57.687 42.857 0.00 0.00 35.82 1.94
680 1339 3.276091 CGTGGCCAAGTTGTCGCA 61.276 61.111 7.24 0.00 0.00 5.10
853 1521 0.563672 TTTTGCCTTTAGGTGGGGGT 59.436 50.000 0.00 0.00 37.57 4.95
974 1642 4.373116 TGCTTCGGCGAGGTGGAC 62.373 66.667 20.34 4.22 45.37 4.02
1228 1903 1.067283 CAACCACACAGCAAACCAACA 60.067 47.619 0.00 0.00 0.00 3.33
1255 1931 1.447838 CCGGGATGTCACCTTCACG 60.448 63.158 0.00 0.00 40.34 4.35
1263 1939 4.408821 GTGGCTGCCGGGATGTCA 62.409 66.667 14.98 0.00 0.00 3.58
1314 1990 0.798389 CGAGCAAGAACGCAGATCGA 60.798 55.000 0.00 0.00 41.67 3.59
1317 1993 1.284657 CATCGAGCAAGAACGCAGAT 58.715 50.000 0.00 0.00 33.64 2.90
1432 2108 3.126453 AGGGAGATTAAACTGGCCTCAT 58.874 45.455 3.32 0.00 0.00 2.90
1467 2143 9.337396 ACATCTAACTTTTGTGAGAACATGTAA 57.663 29.630 0.00 0.00 42.84 2.41
1498 2174 8.385858 CAACTCTGTGAGAACATGTAATACATG 58.614 37.037 26.53 26.53 45.23 3.21
1499 2175 8.097038 ACAACTCTGTGAGAACATGTAATACAT 58.903 33.333 0.00 0.00 34.96 2.29
1500 2176 7.441836 ACAACTCTGTGAGAACATGTAATACA 58.558 34.615 0.00 0.00 33.30 2.29
1501 2177 7.891183 ACAACTCTGTGAGAACATGTAATAC 57.109 36.000 0.00 0.00 33.30 1.89
1526 2202 4.246458 GGCGATGAGATAATGGTAACTCC 58.754 47.826 0.00 0.00 30.06 3.85
1531 2207 4.283212 TCACATGGCGATGAGATAATGGTA 59.717 41.667 16.26 0.00 33.36 3.25
1549 2225 2.551721 CCAAGACCAGCTTCACTCACAT 60.552 50.000 0.00 0.00 33.60 3.21
1566 2242 3.933048 CTGTCCTGCAGCCCCCAAG 62.933 68.421 8.66 0.00 38.52 3.61
1577 2259 1.222936 GGGCATCCTGTCTGTCCTG 59.777 63.158 0.00 0.00 35.44 3.86
1580 2262 1.834263 ACTAAGGGCATCCTGTCTGTC 59.166 52.381 0.00 0.00 44.07 3.51
1581 2263 1.556911 CACTAAGGGCATCCTGTCTGT 59.443 52.381 0.00 0.00 44.07 3.41
1582 2264 1.745141 GCACTAAGGGCATCCTGTCTG 60.745 57.143 0.00 0.00 44.07 3.51
1583 2265 0.543749 GCACTAAGGGCATCCTGTCT 59.456 55.000 0.00 0.00 44.07 3.41
1663 2354 7.925483 CAGTTTCTAGCACTTATAGAGCTCATT 59.075 37.037 17.77 5.00 41.21 2.57
1677 2368 3.219052 ACTAGCGACAGTTTCTAGCAC 57.781 47.619 8.98 0.00 34.63 4.40
1749 2440 5.307544 TGCTAACCAACTACCAAACCTAA 57.692 39.130 0.00 0.00 0.00 2.69
1752 2443 4.521256 TCATTGCTAACCAACTACCAAACC 59.479 41.667 0.00 0.00 35.99 3.27
1779 2475 5.600908 TTCGGAACATACTTGTAAGTTGC 57.399 39.130 2.20 7.89 40.37 4.17
1832 2533 5.950758 ACGAACAATGGTATTGCACTTTA 57.049 34.783 0.00 0.00 0.00 1.85
1838 2539 5.295787 TCTGGATTACGAACAATGGTATTGC 59.704 40.000 0.00 0.00 0.00 3.56
2002 2703 1.611673 GGGTGCCATCCCTCAATATCG 60.612 57.143 2.05 0.00 43.85 2.92
2069 3007 7.064134 TGTGCAAAGTGTAGTAATGTATAGTGC 59.936 37.037 0.00 0.00 0.00 4.40
2190 3132 9.939424 AGACTATCTCCTACCATACTTTAAAGT 57.061 33.333 23.58 23.58 42.91 2.66
2192 3134 9.931698 TGAGACTATCTCCTACCATACTTTAAA 57.068 33.333 3.45 0.00 42.73 1.52
2193 3135 9.352191 GTGAGACTATCTCCTACCATACTTTAA 57.648 37.037 3.45 0.00 42.73 1.52
2194 3136 8.500238 TGTGAGACTATCTCCTACCATACTTTA 58.500 37.037 3.45 0.00 42.73 1.85
2195 3137 7.355101 TGTGAGACTATCTCCTACCATACTTT 58.645 38.462 3.45 0.00 42.73 2.66
2279 3221 6.311690 CACTCCTTAGAGCTAAGCTTTTGTAC 59.688 42.308 3.20 0.00 44.65 2.90
2356 3299 7.697291 CCAACAGTTTCAAAATTGGTTTCATTG 59.303 33.333 3.50 0.00 35.98 2.82
2399 3342 5.454966 TCTATATGTAGAGTGCCTTCACCA 58.545 41.667 0.00 0.00 44.16 4.17
2478 3421 3.082698 TGCAACAAGACAGCACAAATC 57.917 42.857 0.00 0.00 32.55 2.17
2494 3437 5.072055 TCTCTGTCTTCCATTTCAATGCAA 58.928 37.500 0.00 0.00 35.08 4.08
2741 3684 9.727859 TCTTTAGGCACACTAAACATTATAACA 57.272 29.630 0.00 0.00 44.55 2.41
3053 3999 8.362464 TCTCAAGGATAACAGCTTAAGAAGTA 57.638 34.615 6.67 0.00 0.00 2.24
3179 4125 9.625747 AATGACCTGTTGTTTCCATTTAAAAAT 57.374 25.926 0.00 0.00 0.00 1.82
3500 4462 6.519382 CAGTCCTATCTCTTCACATATTGCA 58.481 40.000 0.00 0.00 0.00 4.08
3654 4616 8.598041 AGGGTGATCATATAAGATTACACCTTC 58.402 37.037 19.92 10.43 38.33 3.46
3658 4620 8.589338 ACTGAGGGTGATCATATAAGATTACAC 58.411 37.037 13.00 10.15 37.97 2.90
3819 4789 3.363378 CGAAGCACAGAACATCACAAGTC 60.363 47.826 0.00 0.00 0.00 3.01
3843 4813 5.880332 AGATTACTTTGCATCGGCTCTTTAA 59.120 36.000 0.00 0.00 41.91 1.52
3860 4830 8.654997 ACATAGATGCCTAATTCACAGATTACT 58.345 33.333 0.00 0.00 0.00 2.24
4062 5032 8.561536 TGTTCTTCCATAACCCAGAGATTATA 57.438 34.615 0.00 0.00 0.00 0.98
4142 5112 1.875009 TCAGCAAGACTTCAGCACAG 58.125 50.000 0.88 0.00 0.00 3.66
4231 5201 6.065374 ACATACATGGAGAAGTAGACGAGAT 58.935 40.000 0.00 0.00 0.00 2.75
4291 5261 7.750229 TCATGTCATCTATTAGAAAATGGCC 57.250 36.000 0.00 0.00 0.00 5.36
4417 5387 1.833630 CTGATGACTGAACCCAGCCTA 59.166 52.381 0.00 0.00 44.16 3.93
4438 5408 3.056607 CCATTTGAGTTACCTGCCCTTTG 60.057 47.826 0.00 0.00 0.00 2.77
4628 5598 9.224267 AGCATAACTGGATATACAAGCTAAATG 57.776 33.333 0.00 0.00 0.00 2.32
4740 5791 1.002033 GCACCTTCACTTCTTGCTGTG 60.002 52.381 0.00 0.00 35.68 3.66
4909 5965 5.408909 CCAAATTTGCATTGATGTGCTAACA 59.591 36.000 12.92 0.00 45.27 2.41
5052 6109 1.539496 GGAACGATATAAGCACGGGCA 60.539 52.381 14.57 0.00 44.61 5.36
5174 6231 2.911819 TGCTACAAATTTACAGGCGC 57.088 45.000 0.00 0.00 0.00 6.53
5310 6379 2.144078 TCCCCACGGAGCTTGAACA 61.144 57.895 0.00 0.00 32.86 3.18
5417 6487 5.931146 CAGCAGACAGTTCAGAAGATACTTT 59.069 40.000 0.00 0.00 0.00 2.66
5425 6495 3.181497 GCAAAACAGCAGACAGTTCAGAA 60.181 43.478 0.00 0.00 0.00 3.02
5568 6651 3.077359 CCTTTTCAATGAACGAGGCTCT 58.923 45.455 13.50 0.00 0.00 4.09
5641 6724 4.517952 TCATAACCAAGTTTGCCACATG 57.482 40.909 0.00 0.00 0.00 3.21
5666 6749 1.073216 GTCACAGGCTCGATGACACG 61.073 60.000 14.96 0.00 41.94 4.49
5724 6807 4.056050 ACGAAAGCAGAAGAACGTAATGT 58.944 39.130 0.00 0.00 32.42 2.71
5767 6850 6.095432 AGCTACCAACAACAAATTGCAATA 57.905 33.333 13.39 0.00 39.66 1.90
5801 6884 2.485657 GGAGGGAGTATAACCAAGCAGC 60.486 54.545 0.00 0.00 0.00 5.25
5803 6886 1.760613 CGGAGGGAGTATAACCAAGCA 59.239 52.381 0.00 0.00 0.00 3.91
5815 6898 3.618690 AGAATTTTGAGACGGAGGGAG 57.381 47.619 0.00 0.00 0.00 4.30
5816 6899 3.072476 ACAAGAATTTTGAGACGGAGGGA 59.928 43.478 7.18 0.00 0.00 4.20
5817 6900 3.412386 ACAAGAATTTTGAGACGGAGGG 58.588 45.455 7.18 0.00 0.00 4.30
5818 6901 4.319177 AGACAAGAATTTTGAGACGGAGG 58.681 43.478 7.18 0.00 0.00 4.30
5819 6902 5.931441 AAGACAAGAATTTTGAGACGGAG 57.069 39.130 7.18 0.00 0.00 4.63
5820 6903 6.755206 TCTAAGACAAGAATTTTGAGACGGA 58.245 36.000 7.18 0.00 0.00 4.69
5821 6904 7.602517 ATCTAAGACAAGAATTTTGAGACGG 57.397 36.000 7.18 0.00 0.00 4.79
5832 6915 9.622004 CGTGTTTAGACTAATCTAAGACAAGAA 57.378 33.333 12.22 0.00 45.93 2.52
5833 6916 8.242053 CCGTGTTTAGACTAATCTAAGACAAGA 58.758 37.037 15.92 0.00 45.93 3.02
5834 6917 8.242053 TCCGTGTTTAGACTAATCTAAGACAAG 58.758 37.037 9.15 10.35 45.93 3.16
5835 6918 8.114331 TCCGTGTTTAGACTAATCTAAGACAA 57.886 34.615 9.15 0.00 45.93 3.18
5836 6919 7.692460 TCCGTGTTTAGACTAATCTAAGACA 57.308 36.000 0.00 0.62 45.93 3.41
5837 6920 8.189460 ACATCCGTGTTTAGACTAATCTAAGAC 58.811 37.037 0.00 0.00 45.93 3.01
5838 6921 8.289939 ACATCCGTGTTTAGACTAATCTAAGA 57.710 34.615 0.00 0.00 45.93 2.10
5841 6924 9.570468 AGATACATCCGTGTTTAGACTAATCTA 57.430 33.333 0.00 0.00 39.77 1.98
5842 6925 8.466617 AGATACATCCGTGTTTAGACTAATCT 57.533 34.615 0.00 0.00 39.77 2.40
5843 6926 9.828852 CTAGATACATCCGTGTTTAGACTAATC 57.171 37.037 0.00 0.00 39.77 1.75
5844 6927 9.352191 ACTAGATACATCCGTGTTTAGACTAAT 57.648 33.333 0.00 0.00 39.77 1.73
5845 6928 8.743085 ACTAGATACATCCGTGTTTAGACTAA 57.257 34.615 0.00 0.00 39.77 2.24
5846 6929 9.265901 GTACTAGATACATCCGTGTTTAGACTA 57.734 37.037 0.00 0.00 39.77 2.59
5847 6930 7.992033 AGTACTAGATACATCCGTGTTTAGACT 59.008 37.037 0.00 0.00 39.77 3.24
5848 6931 8.152309 AGTACTAGATACATCCGTGTTTAGAC 57.848 38.462 0.00 0.00 39.77 2.59
5849 6932 9.836864 TTAGTACTAGATACATCCGTGTTTAGA 57.163 33.333 2.23 0.00 39.77 2.10
5852 6935 7.919621 GCTTTAGTACTAGATACATCCGTGTTT 59.080 37.037 2.23 0.00 39.77 2.83
5853 6936 7.067859 TGCTTTAGTACTAGATACATCCGTGTT 59.932 37.037 2.23 0.00 39.77 3.32
5854 6937 6.544931 TGCTTTAGTACTAGATACATCCGTGT 59.455 38.462 2.23 0.00 42.39 4.49
5855 6938 6.967135 TGCTTTAGTACTAGATACATCCGTG 58.033 40.000 2.23 0.00 36.09 4.94
5856 6939 7.447545 TCATGCTTTAGTACTAGATACATCCGT 59.552 37.037 2.23 0.00 36.09 4.69
5857 6940 7.751348 GTCATGCTTTAGTACTAGATACATCCG 59.249 40.741 2.23 0.00 36.09 4.18
5858 6941 8.798402 AGTCATGCTTTAGTACTAGATACATCC 58.202 37.037 2.23 0.57 36.09 3.51
5860 6943 9.973450 CAAGTCATGCTTTAGTACTAGATACAT 57.027 33.333 2.23 3.46 33.88 2.29
5861 6944 9.185680 TCAAGTCATGCTTTAGTACTAGATACA 57.814 33.333 2.23 1.24 33.88 2.29
5865 6948 9.185680 TGTATCAAGTCATGCTTTAGTACTAGA 57.814 33.333 2.23 0.00 34.69 2.43
5866 6949 9.973450 ATGTATCAAGTCATGCTTTAGTACTAG 57.027 33.333 2.23 0.00 34.69 2.57
5867 6950 9.967346 GATGTATCAAGTCATGCTTTAGTACTA 57.033 33.333 0.00 0.00 34.69 1.82
5868 6951 8.700051 AGATGTATCAAGTCATGCTTTAGTACT 58.300 33.333 0.00 0.00 34.69 2.73
5869 6952 8.879342 AGATGTATCAAGTCATGCTTTAGTAC 57.121 34.615 0.37 0.00 34.69 2.73
5901 6984 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
5902 6985 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
5903 6986 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
5904 6987 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
5905 6988 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
5906 6989 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
5907 6990 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
5908 6991 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
5909 6992 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
5910 6993 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
5911 6994 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
5912 6995 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
5913 6996 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
5914 6997 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
5915 6998 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
5916 6999 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
5917 7000 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
5918 7001 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
5919 7002 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
5920 7003 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
5921 7004 1.835531 GATACTCCCTCCGTCCCAAAA 59.164 52.381 0.00 0.00 0.00 2.44
5922 7005 1.007963 AGATACTCCCTCCGTCCCAAA 59.992 52.381 0.00 0.00 0.00 3.28
5923 7006 0.635009 AGATACTCCCTCCGTCCCAA 59.365 55.000 0.00 0.00 0.00 4.12
5924 7007 0.106167 CAGATACTCCCTCCGTCCCA 60.106 60.000 0.00 0.00 0.00 4.37
5925 7008 0.106116 ACAGATACTCCCTCCGTCCC 60.106 60.000 0.00 0.00 0.00 4.46
5926 7009 1.777941 AACAGATACTCCCTCCGTCC 58.222 55.000 0.00 0.00 0.00 4.79
5927 7010 4.341520 ACATAAACAGATACTCCCTCCGTC 59.658 45.833 0.00 0.00 0.00 4.79
5928 7011 4.287552 ACATAAACAGATACTCCCTCCGT 58.712 43.478 0.00 0.00 0.00 4.69
5929 7012 4.939052 ACATAAACAGATACTCCCTCCG 57.061 45.455 0.00 0.00 0.00 4.63
5930 7013 6.487299 AGAACATAAACAGATACTCCCTCC 57.513 41.667 0.00 0.00 0.00 4.30
5931 7014 8.669243 CAAAAGAACATAAACAGATACTCCCTC 58.331 37.037 0.00 0.00 0.00 4.30
5932 7015 7.611855 CCAAAAGAACATAAACAGATACTCCCT 59.388 37.037 0.00 0.00 0.00 4.20
5933 7016 7.393515 ACCAAAAGAACATAAACAGATACTCCC 59.606 37.037 0.00 0.00 0.00 4.30
5934 7017 8.237267 CACCAAAAGAACATAAACAGATACTCC 58.763 37.037 0.00 0.00 0.00 3.85
5935 7018 8.999431 TCACCAAAAGAACATAAACAGATACTC 58.001 33.333 0.00 0.00 0.00 2.59
5936 7019 8.918202 TCACCAAAAGAACATAAACAGATACT 57.082 30.769 0.00 0.00 0.00 2.12
5937 7020 8.999431 TCTCACCAAAAGAACATAAACAGATAC 58.001 33.333 0.00 0.00 0.00 2.24
5938 7021 9.219603 CTCTCACCAAAAGAACATAAACAGATA 57.780 33.333 0.00 0.00 0.00 1.98
5939 7022 7.308830 GCTCTCACCAAAAGAACATAAACAGAT 60.309 37.037 0.00 0.00 0.00 2.90
5965 7048 2.422479 CCTCAGAAATGCACCACATGAG 59.578 50.000 0.00 9.61 39.60 2.90
6024 7107 6.309737 CACGTTGTAGGTCCAAGAGTTTATAC 59.690 42.308 0.00 0.00 0.00 1.47
6064 7147 1.448540 CGATGGTCGCCAAAGCTCT 60.449 57.895 2.68 0.00 36.95 4.09
6104 7188 4.611366 GCAACGTGAACTAACATTTAGCAC 59.389 41.667 0.00 0.00 0.00 4.40
6122 7206 1.821241 CGCCATGTATCGGAGCAACG 61.821 60.000 0.00 0.00 0.00 4.10
6145 7229 0.679505 CAAACACCCCGAGAGTCTCA 59.320 55.000 19.99 0.00 0.00 3.27
6150 7234 3.639094 AGATATCTCAAACACCCCGAGAG 59.361 47.826 0.00 0.00 39.07 3.20
6211 7295 0.759060 AAGGCCCAAAACCACCAGAC 60.759 55.000 0.00 0.00 0.00 3.51
6273 7357 7.292356 AGGAAGGGGTTTAAACATCATCTTTTT 59.708 33.333 19.57 1.40 0.00 1.94
6275 7359 6.322931 AGGAAGGGGTTTAAACATCATCTTT 58.677 36.000 19.57 6.37 0.00 2.52
6276 7360 5.903923 AGGAAGGGGTTTAAACATCATCTT 58.096 37.500 19.57 13.43 0.00 2.40
6278 7362 5.510430 AGAGGAAGGGGTTTAAACATCATC 58.490 41.667 19.57 16.34 0.00 2.92
6279 7363 5.536497 AGAGGAAGGGGTTTAAACATCAT 57.464 39.130 19.57 9.50 0.00 2.45
6282 7366 4.540502 AGCTAGAGGAAGGGGTTTAAACAT 59.459 41.667 19.57 2.66 0.00 2.71
6284 7368 4.225492 AGAGCTAGAGGAAGGGGTTTAAAC 59.775 45.833 9.98 9.98 0.00 2.01
6285 7369 4.436079 AGAGCTAGAGGAAGGGGTTTAAA 58.564 43.478 0.00 0.00 0.00 1.52
6286 7370 4.076175 AGAGCTAGAGGAAGGGGTTTAA 57.924 45.455 0.00 0.00 0.00 1.52
6287 7371 3.778622 AGAGCTAGAGGAAGGGGTTTA 57.221 47.619 0.00 0.00 0.00 2.01
6288 7372 2.651642 AGAGCTAGAGGAAGGGGTTT 57.348 50.000 0.00 0.00 0.00 3.27
6289 7373 2.588248 ACTAGAGCTAGAGGAAGGGGTT 59.412 50.000 11.28 0.00 36.97 4.11
6290 7374 2.219571 ACTAGAGCTAGAGGAAGGGGT 58.780 52.381 11.28 0.00 36.97 4.95
6291 7375 3.117284 AGAACTAGAGCTAGAGGAAGGGG 60.117 52.174 11.28 0.00 36.97 4.79
6298 7382 8.707839 CAAAAGAAACAAGAACTAGAGCTAGAG 58.292 37.037 11.28 0.00 36.97 2.43
6310 7394 5.537188 ACACAAGCACAAAAGAAACAAGAA 58.463 33.333 0.00 0.00 0.00 2.52
6327 7411 7.962373 GGAAAACCAAGAAAAATCAAACACAAG 59.038 33.333 0.00 0.00 0.00 3.16
6348 7433 7.571080 ACACGTCTTGGTTAATTAAGGAAAA 57.429 32.000 0.00 0.00 0.00 2.29
6362 7447 4.822036 TCAAAAACCATACACGTCTTGG 57.178 40.909 6.43 6.43 36.56 3.61
6368 7453 2.745281 ACCGGATCAAAAACCATACACG 59.255 45.455 9.46 0.00 0.00 4.49
6375 7460 2.736144 GGGAAACCGGATCAAAAACC 57.264 50.000 9.46 0.00 43.64 3.27
6387 7472 7.523394 AGTTGATCCAATTAACGAGGGAAACC 61.523 42.308 0.00 0.00 41.35 3.27
6388 7473 5.414765 AGTTGATCCAATTAACGAGGGAAAC 59.585 40.000 0.00 0.00 34.34 2.78
6389 7474 5.566469 AGTTGATCCAATTAACGAGGGAAA 58.434 37.500 0.00 0.00 34.34 3.13
6390 7475 5.045869 AGAGTTGATCCAATTAACGAGGGAA 60.046 40.000 0.00 0.00 34.34 3.97
6391 7476 4.469945 AGAGTTGATCCAATTAACGAGGGA 59.530 41.667 0.00 0.00 34.34 4.20
6392 7477 4.770795 AGAGTTGATCCAATTAACGAGGG 58.229 43.478 0.00 0.00 34.34 4.30
6393 7478 5.874810 TGAAGAGTTGATCCAATTAACGAGG 59.125 40.000 0.00 0.00 34.34 4.63
6394 7479 6.968131 TGAAGAGTTGATCCAATTAACGAG 57.032 37.500 0.00 0.00 34.34 4.18
6395 7480 7.921786 AATGAAGAGTTGATCCAATTAACGA 57.078 32.000 0.00 0.00 34.34 3.85
6414 7499 7.898636 AGGGTTCCCACTATTTCATTAAATGAA 59.101 33.333 10.73 0.00 46.77 2.57
6415 7500 7.418378 AGGGTTCCCACTATTTCATTAAATGA 58.582 34.615 10.73 0.00 36.02 2.57
6416 7501 7.201911 GGAGGGTTCCCACTATTTCATTAAATG 60.202 40.741 10.73 0.00 37.53 2.32
6417 7502 6.839134 GGAGGGTTCCCACTATTTCATTAAAT 59.161 38.462 10.73 0.00 37.53 1.40
6418 7503 6.192044 GGAGGGTTCCCACTATTTCATTAAA 58.808 40.000 10.73 0.00 37.53 1.52
6419 7504 5.630539 CGGAGGGTTCCCACTATTTCATTAA 60.631 44.000 10.73 0.00 40.67 1.40
6420 7505 4.141574 CGGAGGGTTCCCACTATTTCATTA 60.142 45.833 10.73 0.00 40.67 1.90
6421 7506 3.371595 CGGAGGGTTCCCACTATTTCATT 60.372 47.826 10.73 0.00 40.67 2.57
6422 7507 2.172717 CGGAGGGTTCCCACTATTTCAT 59.827 50.000 10.73 0.00 40.67 2.57
6423 7508 1.557832 CGGAGGGTTCCCACTATTTCA 59.442 52.381 10.73 0.00 40.67 2.69
6424 7509 1.746171 GCGGAGGGTTCCCACTATTTC 60.746 57.143 10.73 0.00 40.67 2.17
6425 7510 0.255033 GCGGAGGGTTCCCACTATTT 59.745 55.000 10.73 0.00 40.67 1.40
6426 7511 1.632965 GGCGGAGGGTTCCCACTATT 61.633 60.000 10.73 0.00 40.67 1.73
6427 7512 2.070650 GGCGGAGGGTTCCCACTAT 61.071 63.158 10.73 0.00 40.67 2.12
6428 7513 2.686106 GGCGGAGGGTTCCCACTA 60.686 66.667 10.73 0.00 40.67 2.74
6433 7518 3.787001 CAGAGGGCGGAGGGTTCC 61.787 72.222 0.00 0.00 40.33 3.62
6434 7519 2.683933 TCAGAGGGCGGAGGGTTC 60.684 66.667 0.00 0.00 0.00 3.62
6435 7520 3.003763 GTCAGAGGGCGGAGGGTT 61.004 66.667 0.00 0.00 0.00 4.11
6438 7523 3.522731 CTCGTCAGAGGGCGGAGG 61.523 72.222 0.00 0.00 40.75 4.30
6446 7531 0.679505 TTTGTGGGACCTCGTCAGAG 59.320 55.000 0.00 0.00 43.98 3.35
6447 7532 1.124780 TTTTGTGGGACCTCGTCAGA 58.875 50.000 0.00 0.00 33.68 3.27
6448 7533 1.961793 TTTTTGTGGGACCTCGTCAG 58.038 50.000 0.00 0.00 33.68 3.51
6465 7550 3.551846 TGGAAGCCTTCGTTCTCTTTTT 58.448 40.909 0.00 0.00 0.00 1.94
6466 7551 3.208747 TGGAAGCCTTCGTTCTCTTTT 57.791 42.857 0.00 0.00 0.00 2.27
6467 7552 2.930826 TGGAAGCCTTCGTTCTCTTT 57.069 45.000 0.00 0.00 0.00 2.52
6468 7553 2.704572 CATGGAAGCCTTCGTTCTCTT 58.295 47.619 0.00 0.00 0.00 2.85
6469 7554 1.677217 GCATGGAAGCCTTCGTTCTCT 60.677 52.381 0.00 0.00 0.00 3.10
6470 7555 0.729690 GCATGGAAGCCTTCGTTCTC 59.270 55.000 0.00 0.00 0.00 2.87
6471 7556 0.036732 TGCATGGAAGCCTTCGTTCT 59.963 50.000 0.00 0.00 0.00 3.01
6472 7557 0.881118 TTGCATGGAAGCCTTCGTTC 59.119 50.000 0.00 0.00 0.00 3.95
6473 7558 1.270550 CTTTGCATGGAAGCCTTCGTT 59.729 47.619 0.00 0.00 0.00 3.85
6474 7559 0.883833 CTTTGCATGGAAGCCTTCGT 59.116 50.000 0.00 0.00 0.00 3.85
6475 7560 0.883833 ACTTTGCATGGAAGCCTTCG 59.116 50.000 0.00 0.00 0.00 3.79
6476 7561 3.062042 CAAACTTTGCATGGAAGCCTTC 58.938 45.455 0.00 0.00 0.00 3.46
6477 7562 2.435437 ACAAACTTTGCATGGAAGCCTT 59.565 40.909 0.00 0.00 0.00 4.35
6478 7563 2.041701 ACAAACTTTGCATGGAAGCCT 58.958 42.857 0.00 0.00 0.00 4.58
6479 7564 2.137523 CACAAACTTTGCATGGAAGCC 58.862 47.619 0.00 0.00 0.00 4.35
6480 7565 3.096489 TCACAAACTTTGCATGGAAGC 57.904 42.857 0.00 0.00 0.00 3.86
6481 7566 6.419980 TTTTTCACAAACTTTGCATGGAAG 57.580 33.333 0.00 0.00 0.00 3.46
6482 7567 6.596888 TCATTTTTCACAAACTTTGCATGGAA 59.403 30.769 0.00 0.00 0.00 3.53
6483 7568 6.111382 TCATTTTTCACAAACTTTGCATGGA 58.889 32.000 1.14 0.00 0.00 3.41
6484 7569 6.360844 TCATTTTTCACAAACTTTGCATGG 57.639 33.333 1.14 0.00 0.00 3.66
6485 7570 7.631822 TCATCATTTTTCACAAACTTTGCATG 58.368 30.769 1.14 0.00 0.00 4.06
6486 7571 7.789273 TCATCATTTTTCACAAACTTTGCAT 57.211 28.000 1.14 0.00 0.00 3.96
6487 7572 7.789273 ATCATCATTTTTCACAAACTTTGCA 57.211 28.000 1.14 0.00 0.00 4.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.