Multiple sequence alignment - TraesCS2B01G345500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G345500 chr2B 100.000 5896 0 0 1 5896 492282721 492288616 0.000000e+00 10888.0
1 TraesCS2B01G345500 chr2B 97.006 167 4 1 3479 3644 495247910 495247744 4.500000e-71 279.0
2 TraesCS2B01G345500 chr2B 95.808 167 7 0 3479 3645 664125038 664125204 2.710000e-68 270.0
3 TraesCS2B01G345500 chr2D 95.117 2601 91 19 903 3480 419797619 419800206 0.000000e+00 4067.0
4 TraesCS2B01G345500 chr2D 90.012 821 55 14 4273 5079 419800992 419801799 0.000000e+00 1037.0
5 TraesCS2B01G345500 chr2D 89.300 486 30 6 3862 4326 419800508 419800992 1.830000e-164 590.0
6 TraesCS2B01G345500 chr2D 92.344 418 21 6 5483 5896 419802654 419803064 8.510000e-163 584.0
7 TraesCS2B01G345500 chr2D 77.178 964 135 36 12 911 419788878 419789820 3.200000e-132 483.0
8 TraesCS2B01G345500 chr2D 94.000 150 7 2 3640 3787 419800205 419800354 5.950000e-55 226.0
9 TraesCS2B01G345500 chr2D 93.458 107 5 2 5146 5252 419802042 419802146 2.200000e-34 158.0
10 TraesCS2B01G345500 chr2D 97.674 86 2 0 5071 5156 538279171 538279256 1.320000e-31 148.0
11 TraesCS2B01G345500 chr2D 89.524 105 11 0 5273 5377 419802239 419802343 3.710000e-27 134.0
12 TraesCS2B01G345500 chr2D 83.908 87 5 1 3784 3861 419800399 419800485 2.280000e-09 75.0
13 TraesCS2B01G345500 chr2A 96.029 1385 51 3 2097 3480 570156186 570154805 0.000000e+00 2250.0
14 TraesCS2B01G345500 chr2A 91.220 820 47 14 4273 5082 570154015 570153211 0.000000e+00 1092.0
15 TraesCS2B01G345500 chr2A 84.884 1118 96 28 880 1985 570157287 570156231 0.000000e+00 1061.0
16 TraesCS2B01G345500 chr2A 94.292 473 23 3 5426 5896 570152407 570151937 0.000000e+00 721.0
17 TraesCS2B01G345500 chr2A 89.300 486 31 5 3862 4326 570154554 570154069 1.830000e-164 590.0
18 TraesCS2B01G345500 chr2A 83.221 596 79 15 25 602 570158182 570157590 1.460000e-145 527.0
19 TraesCS2B01G345500 chr2A 93.960 149 8 1 3640 3787 570154806 570154658 2.140000e-54 224.0
20 TraesCS2B01G345500 chr2A 89.933 149 13 1 639 787 570157586 570157440 2.170000e-44 191.0
21 TraesCS2B01G345500 chr6B 98.773 163 2 0 3479 3641 29954290 29954452 2.080000e-74 291.0
22 TraesCS2B01G345500 chr6B 95.808 167 7 0 3479 3645 349459174 349459340 2.710000e-68 270.0
23 TraesCS2B01G345500 chr6B 92.000 100 8 0 5067 5166 718478773 718478674 2.220000e-29 141.0
24 TraesCS2B01G345500 chr1B 96.429 168 6 0 3475 3642 344910534 344910701 1.620000e-70 278.0
25 TraesCS2B01G345500 chr1B 95.783 166 7 0 3476 3641 512763551 512763716 9.740000e-68 268.0
26 TraesCS2B01G345500 chr1B 92.188 64 3 1 1993 2056 524394714 524394775 8.140000e-14 89.8
27 TraesCS2B01G345500 chr4A 96.341 164 6 0 3479 3642 634843448 634843285 2.710000e-68 270.0
28 TraesCS2B01G345500 chr4A 93.814 97 5 1 5060 5156 443844005 443843910 1.710000e-30 145.0
29 TraesCS2B01G345500 chr7B 93.750 176 10 1 3479 3653 605646303 605646478 4.530000e-66 263.0
30 TraesCS2B01G345500 chr7B 92.727 55 0 1 5376 5426 540167819 540167765 6.340000e-10 76.8
31 TraesCS2B01G345500 chr3B 92.308 182 12 2 3478 3659 70263331 70263510 2.110000e-64 257.0
32 TraesCS2B01G345500 chr3B 83.406 229 19 12 4074 4288 201501970 201502193 1.680000e-45 195.0
33 TraesCS2B01G345500 chr3B 83.582 67 3 4 3445 3508 416577597 416577658 8.250000e-04 56.5
34 TraesCS2B01G345500 chrUn 83.406 229 22 7 4074 4288 357608342 357608116 1.300000e-46 198.0
35 TraesCS2B01G345500 chrUn 83.478 230 20 9 4074 4288 465336118 465335892 1.300000e-46 198.0
36 TraesCS2B01G345500 chrUn 82.969 229 22 8 4074 4288 414887482 414887707 2.170000e-44 191.0
37 TraesCS2B01G345500 chrUn 92.784 97 7 0 5070 5166 325927268 325927172 2.220000e-29 141.0
38 TraesCS2B01G345500 chrUn 91.379 58 0 1 5374 5426 119198856 119198799 2.280000e-09 75.0
39 TraesCS2B01G345500 chrUn 100.000 28 0 0 2028 2055 83813962 83813935 1.100000e-02 52.8
40 TraesCS2B01G345500 chrUn 100.000 28 0 0 2028 2055 83861235 83861208 1.100000e-02 52.8
41 TraesCS2B01G345500 chrUn 100.000 28 0 0 2028 2055 254176054 254176027 1.100000e-02 52.8
42 TraesCS2B01G345500 chrUn 100.000 28 0 0 2028 2055 391446276 391446303 1.100000e-02 52.8
43 TraesCS2B01G345500 chrUn 100.000 28 0 0 2028 2055 391518128 391518155 1.100000e-02 52.8
44 TraesCS2B01G345500 chrUn 100.000 28 0 0 2028 2055 456291310 456291283 1.100000e-02 52.8
45 TraesCS2B01G345500 chr5D 83.406 229 22 7 4074 4288 483800148 483799922 1.300000e-46 198.0
46 TraesCS2B01G345500 chr5D 94.737 95 5 0 5063 5157 371800635 371800729 1.320000e-31 148.0
47 TraesCS2B01G345500 chr5D 93.878 98 5 1 5060 5157 302394754 302394850 4.760000e-31 147.0
48 TraesCS2B01G345500 chr5D 93.651 63 4 0 1993 2055 192265938 192265876 1.750000e-15 95.3
49 TraesCS2B01G345500 chr5D 91.525 59 4 1 1999 2056 61715050 61714992 4.900000e-11 80.5
50 TraesCS2B01G345500 chr5D 92.593 54 4 0 1999 2052 530605340 530605393 1.760000e-10 78.7
51 TraesCS2B01G345500 chr5D 90.000 60 1 1 5374 5428 331404883 331404942 8.200000e-09 73.1
52 TraesCS2B01G345500 chr5D 88.889 63 1 2 5370 5426 545989968 545990030 8.200000e-09 73.1
53 TraesCS2B01G345500 chr1D 82.609 230 22 11 4074 4288 254485134 254485360 2.810000e-43 187.0
54 TraesCS2B01G345500 chr1D 96.296 54 2 0 1999 2052 338872436 338872383 8.140000e-14 89.8
55 TraesCS2B01G345500 chr1D 94.118 51 3 0 5376 5426 270999004 270999054 1.760000e-10 78.7
56 TraesCS2B01G345500 chr1D 92.593 54 1 1 5376 5426 182982985 182982932 2.280000e-09 75.0
57 TraesCS2B01G345500 chr1D 100.000 38 0 0 2015 2052 5423629 5423592 2.950000e-08 71.3
58 TraesCS2B01G345500 chr1D 97.561 41 1 0 2012 2052 411567673 411567633 2.950000e-08 71.3
59 TraesCS2B01G345500 chr1D 93.478 46 3 0 2008 2053 20971895 20971940 1.060000e-07 69.4
60 TraesCS2B01G345500 chr1D 91.667 48 4 0 2008 2055 189655512 189655465 3.810000e-07 67.6
61 TraesCS2B01G345500 chr1D 88.889 54 4 1 2000 2053 6139894 6139945 1.370000e-06 65.8
62 TraesCS2B01G345500 chr3D 94.792 96 3 1 5069 5164 310476100 310476007 1.320000e-31 148.0
63 TraesCS2B01G345500 chr3D 94.444 54 3 0 1999 2052 2379867 2379920 3.790000e-12 84.2
64 TraesCS2B01G345500 chr3D 91.379 58 0 1 5374 5426 409922106 409922049 2.280000e-09 75.0
65 TraesCS2B01G345500 chr7A 85.065 154 11 8 4143 4288 676987483 676987632 4.760000e-31 147.0
66 TraesCS2B01G345500 chr7A 96.296 54 2 0 1999 2052 279180144 279180091 8.140000e-14 89.8
67 TraesCS2B01G345500 chr7A 90.625 64 5 1 1993 2055 670941802 670941865 3.790000e-12 84.2
68 TraesCS2B01G345500 chr6A 93.814 97 6 0 5070 5166 553598085 553597989 4.760000e-31 147.0
69 TraesCS2B01G345500 chr6A 93.182 44 0 2 786 826 175096362 175096319 1.770000e-05 62.1
70 TraesCS2B01G345500 chr7D 96.512 86 3 0 5070 5155 580814944 580815029 6.160000e-30 143.0
71 TraesCS2B01G345500 chr7D 96.226 53 2 0 2000 2052 258222818 258222766 2.930000e-13 87.9
72 TraesCS2B01G345500 chr7D 92.593 54 4 0 1999 2052 506007005 506006952 1.760000e-10 78.7
73 TraesCS2B01G345500 chr7D 92.727 55 0 3 5376 5426 462634049 462634103 6.340000e-10 76.8
74 TraesCS2B01G345500 chr1A 95.455 88 4 0 5070 5157 272648028 272648115 2.220000e-29 141.0
75 TraesCS2B01G345500 chr1A 89.091 110 10 2 5071 5179 543063551 543063443 1.030000e-27 135.0
76 TraesCS2B01G345500 chr5A 93.651 63 4 0 1993 2055 230068465 230068403 1.750000e-15 95.3
77 TraesCS2B01G345500 chr5B 94.737 57 3 0 1999 2055 196466952 196466896 8.140000e-14 89.8
78 TraesCS2B01G345500 chr5B 90.164 61 1 1 5371 5426 282296750 282296690 2.280000e-09 75.0
79 TraesCS2B01G345500 chr6D 93.103 58 2 1 1999 2056 282138079 282138134 3.790000e-12 84.2
80 TraesCS2B01G345500 chr6D 92.593 54 4 0 1999 2052 422072073 422072020 1.760000e-10 78.7
81 TraesCS2B01G345500 chr6D 91.667 48 3 1 2009 2055 422072070 422072117 1.370000e-06 65.8
82 TraesCS2B01G345500 chr6D 91.111 45 4 0 2010 2054 29741039 29741083 1.770000e-05 62.1
83 TraesCS2B01G345500 chr6D 97.297 37 0 1 2019 2055 319691092 319691127 1.770000e-05 62.1
84 TraesCS2B01G345500 chr6D 90.909 44 4 0 2010 2053 101445642 101445685 6.380000e-05 60.2
85 TraesCS2B01G345500 chr6D 90.909 44 4 0 2010 2053 190909317 190909360 6.380000e-05 60.2
86 TraesCS2B01G345500 chr6D 94.737 38 2 0 2016 2053 199738291 199738254 6.380000e-05 60.2
87 TraesCS2B01G345500 chr6D 90.909 44 4 0 2010 2053 212341646 212341689 6.380000e-05 60.2
88 TraesCS2B01G345500 chr4D 91.071 56 4 1 1998 2053 259493208 259493262 2.280000e-09 75.0
89 TraesCS2B01G345500 chr4D 93.478 46 3 0 2008 2053 73385841 73385886 1.060000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G345500 chr2B 492282721 492288616 5895 False 10888.000 10888 100.000000 1 5896 1 chr2B.!!$F1 5895
1 TraesCS2B01G345500 chr2D 419797619 419803064 5445 False 858.875 4067 90.957875 903 5896 8 chr2D.!!$F3 4993
2 TraesCS2B01G345500 chr2D 419788878 419789820 942 False 483.000 483 77.178000 12 911 1 chr2D.!!$F1 899
3 TraesCS2B01G345500 chr2A 570151937 570158182 6245 True 832.000 2250 90.354875 25 5896 8 chr2A.!!$R1 5871


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
939 1101 0.034089 CCCAGTCCCCCTGCTTTTAG 60.034 60.0 0.0 0.0 40.06 1.85 F
1189 1358 0.178987 ACCCGCCATAGATCTCGACT 60.179 55.0 0.0 0.0 0.00 4.18 F
2304 2488 0.252284 ACGGATGGAGAAGTGAGGGT 60.252 55.0 0.0 0.0 0.00 4.34 F
3828 4063 0.394192 TGACAGCTCACCTTCCACAG 59.606 55.0 0.0 0.0 0.00 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2894 3079 0.461961 GAAGGTCGACATCCTCCAGG 59.538 60.0 18.91 0.0 33.76 4.45 R
2984 3169 0.605319 TTGACTGTGCGGGTTCATCC 60.605 55.0 0.00 0.0 0.00 3.51 R
3909 4177 1.092921 TACCGATGGCCACGCAAATC 61.093 55.0 8.16 0.0 0.00 2.17 R
5267 5932 0.178970 ATTCCCATCAGGCATCAGGC 60.179 55.0 0.00 0.0 43.74 4.85 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 90 1.340568 CAACACCCACATGCATTGTCA 59.659 47.619 0.00 0.00 36.00 3.58
81 91 1.927487 ACACCCACATGCATTGTCAT 58.073 45.000 0.00 0.00 36.00 3.06
88 98 1.009078 CATGCATTGTCATCGTCGGT 58.991 50.000 0.00 0.00 0.00 4.69
133 143 3.566210 CCACCCCCACCGTGTCTT 61.566 66.667 0.00 0.00 0.00 3.01
241 269 4.637276 TCGTCAAGATAACACACCACAAT 58.363 39.130 0.00 0.00 0.00 2.71
245 273 4.582240 TCAAGATAACACACCACAATGCAA 59.418 37.500 0.00 0.00 0.00 4.08
262 291 0.247185 CAAATGGCCACCCACATGAC 59.753 55.000 8.16 0.00 45.77 3.06
283 312 1.470051 GAAACACACCACCAACACCT 58.530 50.000 0.00 0.00 0.00 4.00
284 313 2.645802 GAAACACACCACCAACACCTA 58.354 47.619 0.00 0.00 0.00 3.08
286 315 1.209621 ACACACCACCAACACCTAGT 58.790 50.000 0.00 0.00 0.00 2.57
294 323 0.889186 CCAACACCTAGTGCCACACC 60.889 60.000 0.00 0.00 36.98 4.16
299 353 1.079819 CCTAGTGCCACACCACTCG 60.080 63.158 0.00 0.00 44.48 4.18
314 368 2.964911 CTCGCCGAAGAGTCAATCC 58.035 57.895 0.00 0.00 33.75 3.01
331 385 4.155733 CGTGTAGCCCGCCATCCA 62.156 66.667 0.00 0.00 0.00 3.41
340 395 2.350895 CGCCATCCAGAACCACCA 59.649 61.111 0.00 0.00 0.00 4.17
366 422 1.923395 ATTCTTGGCCCCGAGACCA 60.923 57.895 0.00 0.00 36.29 4.02
378 434 3.246880 AGACCACCCCCGTTCCAC 61.247 66.667 0.00 0.00 0.00 4.02
418 475 1.344763 CACAGGAGAGGACGAAAAGGT 59.655 52.381 0.00 0.00 0.00 3.50
489 548 0.532862 CGAATCGCACCCCATTAGCT 60.533 55.000 0.00 0.00 0.00 3.32
491 550 2.612972 CGAATCGCACCCCATTAGCTAT 60.613 50.000 0.00 0.00 0.00 2.97
492 551 3.412386 GAATCGCACCCCATTAGCTATT 58.588 45.455 0.00 0.00 0.00 1.73
508 567 3.441496 CTATTGACCGCCAATTGCAAT 57.559 42.857 5.99 5.99 42.55 3.56
523 583 2.735823 TGCAATGACGATCATCGAGAG 58.264 47.619 15.60 0.00 43.74 3.20
526 586 0.600557 ATGACGATCATCGAGAGCCC 59.399 55.000 15.60 0.00 43.74 5.19
527 587 1.081774 GACGATCATCGAGAGCCCG 60.082 63.158 15.60 0.00 43.74 6.13
530 590 0.179176 CGATCATCGAGAGCCCGATC 60.179 60.000 0.00 0.00 46.26 3.69
540 600 3.234730 GCCCGATCGATCCCCACT 61.235 66.667 18.66 0.00 0.00 4.00
545 605 0.459899 CGATCGATCCCCACTCAACA 59.540 55.000 19.51 0.00 0.00 3.33
547 607 1.482593 GATCGATCCCCACTCAACAGT 59.517 52.381 14.76 0.00 0.00 3.55
561 621 3.763671 CAGTGGCCCAAACTGGAC 58.236 61.111 12.81 0.00 40.96 4.02
571 631 3.530910 AAACTGGACGGGGACTGCG 62.531 63.158 0.00 0.00 39.14 5.18
603 663 1.338769 GCTCGTATGGACAAAGGGTGT 60.339 52.381 0.00 0.00 45.74 4.16
626 686 1.183030 CCCCGACGACATAGGCCATA 61.183 60.000 5.01 0.00 0.00 2.74
630 690 2.124903 CGACGACATAGGCCATAACAC 58.875 52.381 5.01 0.00 0.00 3.32
633 694 2.166870 ACGACATAGGCCATAACACGAA 59.833 45.455 5.01 0.00 0.00 3.85
636 697 4.439057 GACATAGGCCATAACACGAAGAA 58.561 43.478 5.01 0.00 0.00 2.52
637 698 4.839121 ACATAGGCCATAACACGAAGAAA 58.161 39.130 5.01 0.00 0.00 2.52
653 714 0.999712 GAAAGGGGAGGGACCATGAA 59.000 55.000 0.00 0.00 41.20 2.57
665 726 1.077501 CCATGAACCATCTGGCGGT 60.078 57.895 0.00 0.00 39.32 5.68
681 742 3.458163 GTGGATCCGCACCCGAGA 61.458 66.667 20.66 0.00 36.29 4.04
688 749 2.434884 CGCACCCGAGACAGCAAT 60.435 61.111 0.00 0.00 36.29 3.56
691 752 0.745845 GCACCCGAGACAGCAATCAT 60.746 55.000 0.00 0.00 0.00 2.45
693 754 2.205074 CACCCGAGACAGCAATCATAC 58.795 52.381 0.00 0.00 0.00 2.39
703 764 5.104193 AGACAGCAATCATACCCAGAGAAAT 60.104 40.000 0.00 0.00 0.00 2.17
727 788 7.093965 TGTTGGTAGGGTTTTATAAGTTCCT 57.906 36.000 7.43 7.43 0.00 3.36
765 826 9.558648 TGAAACATCAAATATTCAAATGAGTCG 57.441 29.630 10.13 0.00 0.00 4.18
780 841 8.984764 TCAAATGAGTCGTATAAATATTTCCCG 58.015 33.333 3.39 5.93 0.00 5.14
814 969 7.921041 TGGTGAAGTCATATTATCTCCTCTT 57.079 36.000 0.00 0.00 0.00 2.85
872 1032 9.487790 TTCAAATGGTCTCAAAATTCCAAATAC 57.512 29.630 0.00 0.00 33.55 1.89
873 1033 8.093927 TCAAATGGTCTCAAAATTCCAAATACC 58.906 33.333 0.00 0.00 33.55 2.73
891 1051 7.405769 CAAATACCAAAAACCATTGTTCACAC 58.594 34.615 0.00 0.00 32.15 3.82
937 1099 1.149133 ATCCCAGTCCCCCTGCTTTT 61.149 55.000 0.00 0.00 40.06 2.27
938 1100 0.476808 TCCCAGTCCCCCTGCTTTTA 60.477 55.000 0.00 0.00 40.06 1.52
939 1101 0.034089 CCCAGTCCCCCTGCTTTTAG 60.034 60.000 0.00 0.00 40.06 1.85
941 1103 1.354368 CCAGTCCCCCTGCTTTTAGAA 59.646 52.381 0.00 0.00 40.06 2.10
1189 1358 0.178987 ACCCGCCATAGATCTCGACT 60.179 55.000 0.00 0.00 0.00 4.18
1226 1395 2.960688 AAGCAGGCGTCCTCTTCCC 61.961 63.158 0.00 0.00 0.00 3.97
1260 1429 3.391382 GGGTCGGTGTGGAGAGGG 61.391 72.222 0.00 0.00 0.00 4.30
1269 1438 2.450243 TGGAGAGGGAGGTCCACC 59.550 66.667 0.00 0.00 37.96 4.61
1352 1521 1.100510 GCTCCGGTAATTTGTTCCCC 58.899 55.000 0.00 0.00 0.00 4.81
1400 1569 3.685139 TTCTTGCTCAAGGTCGATCTT 57.315 42.857 4.73 4.73 38.88 2.40
1406 1575 3.190874 GCTCAAGGTCGATCTTTAGTGG 58.809 50.000 18.40 4.22 0.00 4.00
1485 1654 2.166664 ACCCTCAAGTCGAACTATCTGC 59.833 50.000 0.00 0.00 0.00 4.26
1534 1704 0.390492 GTAGGGGGTTCCGTATTCCG 59.610 60.000 0.00 0.00 41.52 4.30
1574 1746 5.001237 TCGCCTACGAGTCATTTTATCAA 57.999 39.130 0.00 0.00 45.12 2.57
1624 1796 6.211587 TCTATTTGTTGCTGAAATCCCATG 57.788 37.500 0.00 0.00 0.00 3.66
1648 1820 4.101448 CGGTCCTGCCCCAGAAGG 62.101 72.222 0.00 0.00 32.44 3.46
1651 1823 1.575447 GGTCCTGCCCCAGAAGGAAT 61.575 60.000 0.00 0.00 44.15 3.01
1659 1831 2.158740 GCCCCAGAAGGAATAAGAGGAC 60.159 54.545 0.00 0.00 38.24 3.85
1664 1836 5.339530 CCCAGAAGGAATAAGAGGACAATGT 60.340 44.000 0.00 0.00 38.24 2.71
1667 1839 6.036517 CAGAAGGAATAAGAGGACAATGTTCG 59.963 42.308 0.00 0.00 0.00 3.95
1711 1883 8.296713 TGAACTGTGCTTTAGGATAATGTTTTC 58.703 33.333 0.00 0.00 0.00 2.29
1798 1972 9.383519 TGTATCAAGTGGTCTTTAAATCATCTC 57.616 33.333 0.00 0.00 0.00 2.75
1844 2020 9.268268 GGATCGGAATATCAATTACTAACACAA 57.732 33.333 0.00 0.00 0.00 3.33
1908 2086 6.411376 TGTTGGATCCGATGTAAATGTTACT 58.589 36.000 4.57 0.00 0.00 2.24
1917 2095 6.021596 CGATGTAAATGTTACTTGTCCTTGC 58.978 40.000 0.31 0.00 0.00 4.01
1978 2156 1.077716 GCCGGCTGACCCAACTATT 60.078 57.895 22.15 0.00 0.00 1.73
1996 2180 5.222870 ACTATTCAATGTCTCCCTCCATCT 58.777 41.667 0.00 0.00 0.00 2.90
2010 2194 8.180165 TCTCCCTCCATCTTATATGTGAGTATT 58.820 37.037 0.00 0.00 0.00 1.89
2011 2195 8.742125 TCCCTCCATCTTATATGTGAGTATTT 57.258 34.615 0.00 0.00 0.00 1.40
2012 2196 9.170890 TCCCTCCATCTTATATGTGAGTATTTT 57.829 33.333 0.00 0.00 0.00 1.82
2013 2197 9.224267 CCCTCCATCTTATATGTGAGTATTTTG 57.776 37.037 0.00 0.00 0.00 2.44
2077 2261 8.970020 ACATGGATTAAATAATGCTGACTCAAA 58.030 29.630 0.00 0.00 35.39 2.69
2078 2262 9.806203 CATGGATTAAATAATGCTGACTCAAAA 57.194 29.630 6.29 0.00 35.39 2.44
2162 2346 4.899502 ACTGCTGTTAACTGAGCAATACT 58.100 39.130 18.15 3.00 44.44 2.12
2304 2488 0.252284 ACGGATGGAGAAGTGAGGGT 60.252 55.000 0.00 0.00 0.00 4.34
2710 2895 3.126001 TGAGAGGGCAACACAACTTAG 57.874 47.619 0.00 0.00 39.74 2.18
2834 3019 1.915141 CACTGGTTCCTGGAAGCATT 58.085 50.000 33.90 27.62 46.49 3.56
2894 3079 0.833287 TGGAGCTAGGATCACAAGGC 59.167 55.000 0.00 0.00 0.00 4.35
2900 3085 1.415659 CTAGGATCACAAGGCCTGGAG 59.584 57.143 16.25 6.09 32.59 3.86
2909 3094 1.617947 AAGGCCTGGAGGATGTCGAC 61.618 60.000 5.69 9.11 37.39 4.20
2977 3162 2.597510 AGACCCAAAGCCGCAACC 60.598 61.111 0.00 0.00 0.00 3.77
2979 3164 2.912025 ACCCAAAGCCGCAACCAG 60.912 61.111 0.00 0.00 0.00 4.00
3110 3295 0.874390 GAATGAAACAGGCTCGCACA 59.126 50.000 0.00 0.00 0.00 4.57
3116 3301 0.947244 AACAGGCTCGCACAAAAGAG 59.053 50.000 0.00 0.00 37.54 2.85
3302 3487 0.915364 GGCTGAAGAGGGAGGTCAAT 59.085 55.000 0.00 0.00 0.00 2.57
3480 3665 4.595762 ATCCATGCTTCATGCCAATTAC 57.404 40.909 1.47 0.00 40.20 1.89
3481 3666 3.634504 TCCATGCTTCATGCCAATTACT 58.365 40.909 1.47 0.00 40.20 2.24
3482 3667 3.633525 TCCATGCTTCATGCCAATTACTC 59.366 43.478 1.47 0.00 40.20 2.59
3483 3668 3.243636 CCATGCTTCATGCCAATTACTCC 60.244 47.826 1.47 0.00 40.20 3.85
3484 3669 2.378038 TGCTTCATGCCAATTACTCCC 58.622 47.619 0.00 0.00 42.00 4.30
3485 3670 2.025037 TGCTTCATGCCAATTACTCCCT 60.025 45.455 0.00 0.00 42.00 4.20
3486 3671 2.620585 GCTTCATGCCAATTACTCCCTC 59.379 50.000 0.00 0.00 35.15 4.30
3487 3672 3.217626 CTTCATGCCAATTACTCCCTCC 58.782 50.000 0.00 0.00 0.00 4.30
3488 3673 1.140852 TCATGCCAATTACTCCCTCCG 59.859 52.381 0.00 0.00 0.00 4.63
3489 3674 1.134098 CATGCCAATTACTCCCTCCGT 60.134 52.381 0.00 0.00 0.00 4.69
3490 3675 0.988832 TGCCAATTACTCCCTCCGTT 59.011 50.000 0.00 0.00 0.00 4.44
3491 3676 1.065709 TGCCAATTACTCCCTCCGTTC 60.066 52.381 0.00 0.00 0.00 3.95
3492 3677 1.746171 GCCAATTACTCCCTCCGTTCC 60.746 57.143 0.00 0.00 0.00 3.62
3493 3678 1.838077 CCAATTACTCCCTCCGTTCCT 59.162 52.381 0.00 0.00 0.00 3.36
3494 3679 3.036091 CCAATTACTCCCTCCGTTCCTA 58.964 50.000 0.00 0.00 0.00 2.94
3495 3680 3.453353 CCAATTACTCCCTCCGTTCCTAA 59.547 47.826 0.00 0.00 0.00 2.69
3496 3681 4.080751 CCAATTACTCCCTCCGTTCCTAAA 60.081 45.833 0.00 0.00 0.00 1.85
3497 3682 5.397559 CCAATTACTCCCTCCGTTCCTAAAT 60.398 44.000 0.00 0.00 0.00 1.40
3498 3683 6.183361 CCAATTACTCCCTCCGTTCCTAAATA 60.183 42.308 0.00 0.00 0.00 1.40
3499 3684 7.450903 CAATTACTCCCTCCGTTCCTAAATAT 58.549 38.462 0.00 0.00 0.00 1.28
3500 3685 8.591072 CAATTACTCCCTCCGTTCCTAAATATA 58.409 37.037 0.00 0.00 0.00 0.86
3501 3686 8.731591 ATTACTCCCTCCGTTCCTAAATATAA 57.268 34.615 0.00 0.00 0.00 0.98
3502 3687 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
3503 3688 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
3504 3689 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
3505 3690 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
3506 3691 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
3507 3692 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
3508 3693 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
3509 3694 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
3524 3709 5.971763 AGTCTTTGTAGAGATTGCACTAGG 58.028 41.667 0.00 0.00 0.00 3.02
3525 3710 5.482175 AGTCTTTGTAGAGATTGCACTAGGT 59.518 40.000 0.00 0.00 0.00 3.08
3526 3711 5.578727 GTCTTTGTAGAGATTGCACTAGGTG 59.421 44.000 0.00 0.00 36.51 4.00
3527 3712 4.471904 TTGTAGAGATTGCACTAGGTGG 57.528 45.455 0.00 0.00 33.64 4.61
3528 3713 3.708451 TGTAGAGATTGCACTAGGTGGA 58.292 45.455 0.00 0.00 33.64 4.02
3529 3714 3.447586 TGTAGAGATTGCACTAGGTGGAC 59.552 47.826 0.00 0.00 32.77 4.02
3530 3715 2.826488 AGAGATTGCACTAGGTGGACT 58.174 47.619 0.00 0.00 32.77 3.85
3531 3716 3.982516 AGAGATTGCACTAGGTGGACTA 58.017 45.455 0.00 0.00 32.77 2.59
3532 3717 3.702045 AGAGATTGCACTAGGTGGACTAC 59.298 47.826 0.00 0.00 32.77 2.73
3533 3718 3.441101 AGATTGCACTAGGTGGACTACA 58.559 45.455 0.00 0.00 32.77 2.74
3534 3719 4.033709 AGATTGCACTAGGTGGACTACAT 58.966 43.478 0.00 0.00 32.77 2.29
3535 3720 5.208890 AGATTGCACTAGGTGGACTACATA 58.791 41.667 0.00 0.00 32.77 2.29
3536 3721 4.730949 TTGCACTAGGTGGACTACATAC 57.269 45.455 0.00 0.00 32.77 2.39
3537 3722 2.686405 TGCACTAGGTGGACTACATACG 59.314 50.000 0.00 0.00 33.64 3.06
3538 3723 2.034305 GCACTAGGTGGACTACATACGG 59.966 54.545 0.00 0.00 33.64 4.02
3539 3724 3.548770 CACTAGGTGGACTACATACGGA 58.451 50.000 0.00 0.00 0.00 4.69
3540 3725 3.949754 CACTAGGTGGACTACATACGGAA 59.050 47.826 0.00 0.00 0.00 4.30
3541 3726 4.583489 CACTAGGTGGACTACATACGGAAT 59.417 45.833 0.00 0.00 0.00 3.01
3542 3727 5.766670 CACTAGGTGGACTACATACGGAATA 59.233 44.000 0.00 0.00 0.00 1.75
3543 3728 6.263842 CACTAGGTGGACTACATACGGAATAA 59.736 42.308 0.00 0.00 0.00 1.40
3544 3729 6.835488 ACTAGGTGGACTACATACGGAATAAA 59.165 38.462 0.00 0.00 0.00 1.40
3545 3730 6.549433 AGGTGGACTACATACGGAATAAAA 57.451 37.500 0.00 0.00 0.00 1.52
3546 3731 7.133133 AGGTGGACTACATACGGAATAAAAT 57.867 36.000 0.00 0.00 0.00 1.82
3547 3732 6.990349 AGGTGGACTACATACGGAATAAAATG 59.010 38.462 0.00 0.00 0.00 2.32
3548 3733 6.987992 GGTGGACTACATACGGAATAAAATGA 59.012 38.462 0.00 0.00 0.00 2.57
3549 3734 7.496591 GGTGGACTACATACGGAATAAAATGAA 59.503 37.037 0.00 0.00 0.00 2.57
3550 3735 9.052759 GTGGACTACATACGGAATAAAATGAAT 57.947 33.333 0.00 0.00 0.00 2.57
3551 3736 9.051679 TGGACTACATACGGAATAAAATGAATG 57.948 33.333 0.00 0.00 0.00 2.67
3552 3737 9.268268 GGACTACATACGGAATAAAATGAATGA 57.732 33.333 0.00 0.00 0.00 2.57
3590 3775 9.842775 AAATGCATCTATATACATCTGTATGGG 57.157 33.333 12.10 3.84 41.03 4.00
3591 3776 7.365497 TGCATCTATATACATCTGTATGGGG 57.635 40.000 12.10 3.56 41.03 4.96
3592 3777 6.902974 TGCATCTATATACATCTGTATGGGGT 59.097 38.462 12.10 0.73 41.03 4.95
3593 3778 7.402941 TGCATCTATATACATCTGTATGGGGTT 59.597 37.037 12.10 0.00 41.03 4.11
3594 3779 8.267894 GCATCTATATACATCTGTATGGGGTTT 58.732 37.037 12.10 0.00 41.03 3.27
3601 3786 5.621193 ACATCTGTATGGGGTTTATAGTGC 58.379 41.667 0.00 0.00 37.43 4.40
3602 3787 5.131977 ACATCTGTATGGGGTTTATAGTGCA 59.868 40.000 0.00 0.00 37.43 4.57
3603 3788 5.702065 TCTGTATGGGGTTTATAGTGCAA 57.298 39.130 0.00 0.00 0.00 4.08
3604 3789 6.260700 TCTGTATGGGGTTTATAGTGCAAT 57.739 37.500 0.00 0.00 0.00 3.56
3605 3790 6.296026 TCTGTATGGGGTTTATAGTGCAATC 58.704 40.000 0.00 0.00 0.00 2.67
3606 3791 6.101150 TCTGTATGGGGTTTATAGTGCAATCT 59.899 38.462 0.00 0.00 0.00 2.40
3607 3792 6.296026 TGTATGGGGTTTATAGTGCAATCTC 58.704 40.000 0.00 0.00 0.00 2.75
3608 3793 5.653255 ATGGGGTTTATAGTGCAATCTCT 57.347 39.130 0.00 0.00 0.00 3.10
3609 3794 6.763715 ATGGGGTTTATAGTGCAATCTCTA 57.236 37.500 0.00 0.00 0.00 2.43
3610 3795 5.925509 TGGGGTTTATAGTGCAATCTCTAC 58.074 41.667 0.00 0.00 0.00 2.59
3611 3796 5.427157 TGGGGTTTATAGTGCAATCTCTACA 59.573 40.000 0.00 0.00 0.00 2.74
3612 3797 6.069905 TGGGGTTTATAGTGCAATCTCTACAA 60.070 38.462 0.00 0.00 0.00 2.41
3613 3798 6.826741 GGGGTTTATAGTGCAATCTCTACAAA 59.173 38.462 0.00 0.00 0.00 2.83
3614 3799 7.012421 GGGGTTTATAGTGCAATCTCTACAAAG 59.988 40.741 0.00 0.00 0.00 2.77
3615 3800 7.769044 GGGTTTATAGTGCAATCTCTACAAAGA 59.231 37.037 0.00 0.00 0.00 2.52
3616 3801 8.604890 GGTTTATAGTGCAATCTCTACAAAGAC 58.395 37.037 0.00 0.00 0.00 3.01
3617 3802 9.372369 GTTTATAGTGCAATCTCTACAAAGACT 57.628 33.333 0.00 0.00 0.00 3.24
3618 3803 9.944376 TTTATAGTGCAATCTCTACAAAGACTT 57.056 29.630 0.00 0.00 0.00 3.01
3620 3805 8.934507 ATAGTGCAATCTCTACAAAGACTTAC 57.065 34.615 0.00 0.00 0.00 2.34
3621 3806 6.759272 AGTGCAATCTCTACAAAGACTTACA 58.241 36.000 0.00 0.00 0.00 2.41
3622 3807 7.390027 AGTGCAATCTCTACAAAGACTTACAT 58.610 34.615 0.00 0.00 0.00 2.29
3623 3808 7.880195 AGTGCAATCTCTACAAAGACTTACATT 59.120 33.333 0.00 0.00 0.00 2.71
3624 3809 8.507249 GTGCAATCTCTACAAAGACTTACATTT 58.493 33.333 0.00 0.00 0.00 2.32
3625 3810 9.719355 TGCAATCTCTACAAAGACTTACATTTA 57.281 29.630 0.00 0.00 0.00 1.40
3630 3815 9.924650 TCTCTACAAAGACTTACATTTAGGAAC 57.075 33.333 0.00 0.00 0.00 3.62
3631 3816 8.752766 TCTACAAAGACTTACATTTAGGAACG 57.247 34.615 0.00 0.00 0.00 3.95
3632 3817 6.796705 ACAAAGACTTACATTTAGGAACGG 57.203 37.500 0.00 0.00 0.00 4.44
3633 3818 6.527423 ACAAAGACTTACATTTAGGAACGGA 58.473 36.000 0.00 0.00 0.00 4.69
3634 3819 6.649557 ACAAAGACTTACATTTAGGAACGGAG 59.350 38.462 0.00 0.00 0.00 4.63
3635 3820 5.340439 AGACTTACATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
3636 3821 4.161754 AGACTTACATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
3637 3822 4.098894 ACTTACATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
3638 3823 4.161754 ACTTACATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
3639 3824 2.547990 ACATTTAGGAACGGAGGGAGT 58.452 47.619 0.00 0.00 0.00 3.85
3640 3825 3.716431 ACATTTAGGAACGGAGGGAGTA 58.284 45.455 0.00 0.00 0.00 2.59
3667 3852 5.128171 TGGTTCTGTGATTAGTAGCGGTATT 59.872 40.000 0.00 0.00 0.00 1.89
3672 3857 8.004087 TCTGTGATTAGTAGCGGTATTTAGTT 57.996 34.615 0.00 0.00 0.00 2.24
3720 3906 9.139174 TGTTTTTGCTTTGCTATTAGCTAATTC 57.861 29.630 23.47 15.69 42.97 2.17
3762 3949 1.102978 GCGTTCTACCAAATGCCCAT 58.897 50.000 0.00 0.00 35.55 4.00
3787 3974 6.279513 ACGCCATGGATTTTCTTTTTGATA 57.720 33.333 18.40 0.00 0.00 2.15
3790 4025 6.757947 CGCCATGGATTTTCTTTTTGATATGT 59.242 34.615 18.40 0.00 0.00 2.29
3827 4062 0.836606 TTGACAGCTCACCTTCCACA 59.163 50.000 0.00 0.00 0.00 4.17
3828 4063 0.394192 TGACAGCTCACCTTCCACAG 59.606 55.000 0.00 0.00 0.00 3.66
3861 4105 8.844244 GGTGCAGAGATAAAATCACATTAGAAT 58.156 33.333 0.00 0.00 0.00 2.40
3862 4106 9.661187 GTGCAGAGATAAAATCACATTAGAATG 57.339 33.333 0.61 0.61 42.10 2.67
3863 4107 8.347771 TGCAGAGATAAAATCACATTAGAATGC 58.652 33.333 2.09 0.00 40.04 3.56
3909 4177 3.447229 GGGATGTTTGGAATGGGTGTAAG 59.553 47.826 0.00 0.00 0.00 2.34
3946 4214 7.201732 CCATCGGTATTTAGCTCAAACTTGAAT 60.202 37.037 0.00 0.00 36.64 2.57
3947 4215 7.303634 TCGGTATTTAGCTCAAACTTGAATC 57.696 36.000 0.00 0.00 36.64 2.52
3964 4232 0.101759 ATCGAATACCGGTGGACACG 59.898 55.000 19.93 15.25 39.14 4.49
3982 4250 4.356289 ACACGCAAAATTTACACCTGTTC 58.644 39.130 0.00 0.00 0.00 3.18
4066 4334 0.171231 GGCCAGCCATTTCGTTCTTC 59.829 55.000 3.12 0.00 35.81 2.87
4081 4360 3.664486 CGTTCTTCAGTAACTCTCACACG 59.336 47.826 0.00 0.00 0.00 4.49
4092 4371 0.471211 TCTCACACGGGGAGGAAGTT 60.471 55.000 3.73 0.00 33.18 2.66
4108 4387 6.040955 GGAGGAAGTTCTTCAAAACTGGATTT 59.959 38.462 16.01 0.00 39.40 2.17
4109 4388 6.809869 AGGAAGTTCTTCAAAACTGGATTTG 58.190 36.000 13.44 2.82 39.40 2.32
4111 4390 7.041721 GGAAGTTCTTCAAAACTGGATTTGTT 58.958 34.615 13.44 0.00 39.40 2.83
4120 4399 8.810652 TCAAAACTGGATTTGTTATTGTAAGC 57.189 30.769 7.69 0.00 40.40 3.09
4123 4402 4.398044 ACTGGATTTGTTATTGTAAGCGGG 59.602 41.667 0.00 0.00 0.00 6.13
4128 4407 6.090223 GGATTTGTTATTGTAAGCGGGTTTTG 59.910 38.462 0.00 0.00 0.00 2.44
4134 4413 7.175293 TGTTATTGTAAGCGGGTTTTGAAGTAT 59.825 33.333 0.00 0.00 0.00 2.12
4163 4443 9.832445 ATATTAAGGAACAAAGCGAGATAAGAA 57.168 29.630 0.00 0.00 0.00 2.52
4314 4710 5.124457 CAGTTCAACATTCATCTACCTTGGG 59.876 44.000 0.00 0.00 0.00 4.12
4326 4722 5.353394 TCTACCTTGGGTGTGATGATAAC 57.647 43.478 0.00 0.00 36.19 1.89
4359 4759 4.732285 AAATATAATTCAGGTCGCTGCG 57.268 40.909 17.25 17.25 0.00 5.18
4364 4764 0.391661 ATTCAGGTCGCTGCGTCAAT 60.392 50.000 22.48 9.41 0.00 2.57
4368 4768 0.530744 AGGTCGCTGCGTCAATAGAA 59.469 50.000 22.48 0.00 0.00 2.10
4381 4781 0.463833 AATAGAAAAGAGGGCGGCGG 60.464 55.000 9.78 0.00 0.00 6.13
4415 4815 1.151668 GCATCTAATAGCCACTGCCG 58.848 55.000 0.00 0.00 38.69 5.69
4416 4816 1.541233 GCATCTAATAGCCACTGCCGT 60.541 52.381 0.00 0.00 38.69 5.68
4417 4817 2.138320 CATCTAATAGCCACTGCCGTG 58.862 52.381 0.56 0.56 40.89 4.94
4446 4846 2.300433 CAAATGGATGATTCGGAGGCA 58.700 47.619 0.00 0.00 0.00 4.75
4493 4893 1.204062 CAACAGCGCAACCGTGTAG 59.796 57.895 11.47 0.00 36.67 2.74
4505 4905 4.742440 GCAACCGTGTAGATATCAATCCCA 60.742 45.833 5.32 0.00 31.98 4.37
4506 4906 5.364778 CAACCGTGTAGATATCAATCCCAA 58.635 41.667 5.32 0.00 31.98 4.12
4511 4911 5.751509 CGTGTAGATATCAATCCCAAAACGA 59.248 40.000 5.32 0.00 31.98 3.85
4524 4924 9.289303 CAATCCCAAAACGAAATAGTATTTCAG 57.711 33.333 27.22 22.24 0.00 3.02
4561 4961 2.570135 TCAGCAGTGCACATACAAACA 58.430 42.857 21.04 0.00 0.00 2.83
4566 4966 6.072008 TCAGCAGTGCACATACAAACATAATT 60.072 34.615 21.04 0.00 0.00 1.40
4567 4967 6.587226 CAGCAGTGCACATACAAACATAATTT 59.413 34.615 21.04 0.00 0.00 1.82
4601 5001 6.476706 GCTGCAACCAGTATTCCATATTTTTC 59.523 38.462 0.00 0.00 41.26 2.29
4602 5002 7.473735 TGCAACCAGTATTCCATATTTTTCA 57.526 32.000 0.00 0.00 0.00 2.69
4603 5003 8.076910 TGCAACCAGTATTCCATATTTTTCAT 57.923 30.769 0.00 0.00 0.00 2.57
4604 5004 7.980662 TGCAACCAGTATTCCATATTTTTCATG 59.019 33.333 0.00 0.00 0.00 3.07
4605 5005 7.981225 GCAACCAGTATTCCATATTTTTCATGT 59.019 33.333 0.00 0.00 0.00 3.21
4606 5006 9.304731 CAACCAGTATTCCATATTTTTCATGTG 57.695 33.333 0.00 0.00 0.00 3.21
4662 5071 1.357137 TCACAGCCCAAGACACCATA 58.643 50.000 0.00 0.00 0.00 2.74
4669 5078 2.746472 GCCCAAGACACCATATGAGGTC 60.746 54.545 15.04 15.04 40.77 3.85
4687 5096 1.069906 GTCGTCACAATGTCACCTTGC 60.070 52.381 0.00 0.00 0.00 4.01
4696 5105 1.008538 GTCACCTTGCAAAGTGCCG 60.009 57.895 21.07 0.84 44.25 5.69
4716 5125 1.094073 CATGGACACCTGCTAGCTGC 61.094 60.000 17.23 0.38 43.25 5.25
4748 5157 4.328712 CACACATTGCATGAACATCCAATG 59.671 41.667 22.12 22.12 46.03 2.82
4759 5168 5.202765 TGAACATCCAATGCAATCTACCAT 58.797 37.500 0.00 0.00 0.00 3.55
4770 5179 5.834169 TGCAATCTACCATACATTTGCATG 58.166 37.500 4.19 0.00 43.02 4.06
4773 5182 6.639686 GCAATCTACCATACATTTGCATGAAG 59.360 38.462 0.00 0.00 39.30 3.02
4798 5208 7.365497 GGGGGCTACAAGTATAAAGTAACTA 57.635 40.000 0.00 0.00 0.00 2.24
4810 5220 9.368416 AGTATAAAGTAACTAGATCATGCCAGA 57.632 33.333 0.00 0.00 0.00 3.86
4872 5282 8.960591 CATGTTTATTTCTCTAACCAGGAATGT 58.039 33.333 0.00 0.00 0.00 2.71
4926 5336 1.376424 CAGTCCATGGCGCTCAAGT 60.376 57.895 6.96 0.00 0.00 3.16
5060 5470 2.419457 TGGACAACCCAGGGTTAGTA 57.581 50.000 24.54 8.03 45.01 1.82
5082 5492 3.530564 ACTACCCATGTACTCCCTCTGTA 59.469 47.826 0.00 0.00 0.00 2.74
5083 5493 3.484953 ACCCATGTACTCCCTCTGTAA 57.515 47.619 0.00 0.00 0.00 2.41
5084 5494 3.798515 ACCCATGTACTCCCTCTGTAAA 58.201 45.455 0.00 0.00 0.00 2.01
5085 5495 3.518303 ACCCATGTACTCCCTCTGTAAAC 59.482 47.826 0.00 0.00 0.00 2.01
5087 5497 4.960469 CCCATGTACTCCCTCTGTAAACTA 59.040 45.833 0.00 0.00 0.00 2.24
5088 5498 5.424252 CCCATGTACTCCCTCTGTAAACTAA 59.576 44.000 0.00 0.00 0.00 2.24
5091 5501 8.047310 CCATGTACTCCCTCTGTAAACTAAAAT 58.953 37.037 0.00 0.00 0.00 1.82
5097 5507 8.041919 ACTCCCTCTGTAAACTAAAATAAGAGC 58.958 37.037 0.00 0.00 0.00 4.09
5098 5508 7.039882 TCCCTCTGTAAACTAAAATAAGAGCG 58.960 38.462 0.00 0.00 0.00 5.03
5099 5509 6.817140 CCCTCTGTAAACTAAAATAAGAGCGT 59.183 38.462 0.00 0.00 0.00 5.07
5101 5511 8.718734 CCTCTGTAAACTAAAATAAGAGCGTTT 58.281 33.333 0.00 0.00 0.00 3.60
5158 5745 5.609533 TTAGTTTATGGAGGGAGTACTGC 57.390 43.478 5.70 5.70 0.00 4.40
5203 5790 2.099756 GCACAAGACAAGCTTTTCTGGT 59.900 45.455 15.61 15.61 33.60 4.00
5248 5835 3.462205 AGTTGTTTTAGGTCTCAGGGGTT 59.538 43.478 0.00 0.00 0.00 4.11
5261 5926 1.880027 CAGGGGTTAAAGCACTCACAC 59.120 52.381 0.00 0.00 0.00 3.82
5265 5930 4.781087 AGGGGTTAAAGCACTCACACTATA 59.219 41.667 0.00 0.00 0.00 1.31
5266 5931 5.428783 AGGGGTTAAAGCACTCACACTATAT 59.571 40.000 0.00 0.00 0.00 0.86
5267 5932 5.527582 GGGGTTAAAGCACTCACACTATATG 59.472 44.000 0.00 0.00 0.00 1.78
5268 5933 5.007724 GGGTTAAAGCACTCACACTATATGC 59.992 44.000 0.00 0.00 36.52 3.14
5269 5934 5.007724 GGTTAAAGCACTCACACTATATGCC 59.992 44.000 0.00 0.00 36.96 4.40
5270 5935 4.494091 AAAGCACTCACACTATATGCCT 57.506 40.909 0.00 0.00 36.96 4.75
5271 5936 3.465742 AGCACTCACACTATATGCCTG 57.534 47.619 0.00 0.00 36.96 4.85
5305 5970 8.129496 TGGGAATAAGTAGCAATATCGACATA 57.871 34.615 0.00 0.00 0.00 2.29
5306 5971 8.590204 TGGGAATAAGTAGCAATATCGACATAA 58.410 33.333 0.00 0.00 0.00 1.90
5312 5977 8.958119 AAGTAGCAATATCGACATAAAAGGAA 57.042 30.769 0.00 0.00 0.00 3.36
5325 5990 7.133891 ACATAAAAGGAATTTGAGACTGTCG 57.866 36.000 1.52 0.00 32.27 4.35
5330 5995 4.899502 AGGAATTTGAGACTGTCGAATGT 58.100 39.130 1.52 0.00 38.20 2.71
5334 5999 6.147164 GGAATTTGAGACTGTCGAATGTTACA 59.853 38.462 1.52 0.00 38.20 2.41
5355 6020 5.255687 ACAGCCATCAGTTATCAAATGTCA 58.744 37.500 0.00 0.00 0.00 3.58
5381 6046 9.682465 AAAAGGTTACTCATTATTTCTACTCCC 57.318 33.333 0.00 0.00 0.00 4.30
5382 6047 8.625467 AAGGTTACTCATTATTTCTACTCCCT 57.375 34.615 0.00 0.00 0.00 4.20
5383 6048 8.252624 AGGTTACTCATTATTTCTACTCCCTC 57.747 38.462 0.00 0.00 0.00 4.30
5384 6049 8.068733 AGGTTACTCATTATTTCTACTCCCTCT 58.931 37.037 0.00 0.00 0.00 3.69
5386 6051 8.697292 GTTACTCATTATTTCTACTCCCTCTGT 58.303 37.037 0.00 0.00 0.00 3.41
5387 6052 7.741554 ACTCATTATTTCTACTCCCTCTGTT 57.258 36.000 0.00 0.00 0.00 3.16
5388 6053 7.787028 ACTCATTATTTCTACTCCCTCTGTTC 58.213 38.462 0.00 0.00 0.00 3.18
5389 6054 7.125792 TCATTATTTCTACTCCCTCTGTTCC 57.874 40.000 0.00 0.00 0.00 3.62
5391 6056 8.065627 TCATTATTTCTACTCCCTCTGTTCCTA 58.934 37.037 0.00 0.00 0.00 2.94
5392 6057 8.705594 CATTATTTCTACTCCCTCTGTTCCTAA 58.294 37.037 0.00 0.00 0.00 2.69
5393 6058 8.674925 TTATTTCTACTCCCTCTGTTCCTAAA 57.325 34.615 0.00 0.00 0.00 1.85
5394 6059 7.757242 ATTTCTACTCCCTCTGTTCCTAAAT 57.243 36.000 0.00 0.00 0.00 1.40
5395 6060 8.855804 ATTTCTACTCCCTCTGTTCCTAAATA 57.144 34.615 0.00 0.00 0.00 1.40
5397 6062 8.855804 TTCTACTCCCTCTGTTCCTAAATATT 57.144 34.615 0.00 0.00 0.00 1.28
5398 6063 8.855804 TCTACTCCCTCTGTTCCTAAATATTT 57.144 34.615 5.89 5.89 0.00 1.40
5399 6064 9.280456 TCTACTCCCTCTGTTCCTAAATATTTT 57.720 33.333 5.91 0.00 0.00 1.82
5400 6065 9.907229 CTACTCCCTCTGTTCCTAAATATTTTT 57.093 33.333 5.91 0.00 0.00 1.94
5503 6405 6.721208 TGCAAAGTAAGAAGAAATGAAGGGAT 59.279 34.615 0.00 0.00 0.00 3.85
5668 6570 5.466058 CACATTTGCATCTTAAAGTTGCCAA 59.534 36.000 6.71 3.12 39.53 4.52
5692 6594 7.458409 AGCTGAGTCAAAACACATTATGAAT 57.542 32.000 0.00 0.00 0.00 2.57
5840 6746 6.126796 TGACCAGAGCCTGAAATGATAATACA 60.127 38.462 4.00 0.00 32.44 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 2.097110 TACCCACTGACACTCAAGGT 57.903 50.000 0.00 0.00 31.72 3.50
7 8 2.289694 CCTTACCCACTGACACTCAAGG 60.290 54.545 0.00 0.00 0.00 3.61
8 9 2.368875 ACCTTACCCACTGACACTCAAG 59.631 50.000 0.00 0.00 0.00 3.02
9 10 2.404559 ACCTTACCCACTGACACTCAA 58.595 47.619 0.00 0.00 0.00 3.02
10 11 2.097110 ACCTTACCCACTGACACTCA 57.903 50.000 0.00 0.00 0.00 3.41
41 42 2.107141 GATCCTCTTGGGGCGTCG 59.893 66.667 0.00 0.00 35.33 5.12
43 44 1.488705 TTGTGATCCTCTTGGGGCGT 61.489 55.000 0.00 0.00 35.33 5.68
80 90 3.108343 CGCCTCAGTACCGACGAT 58.892 61.111 0.00 0.00 0.00 3.73
81 91 3.807538 GCGCCTCAGTACCGACGA 61.808 66.667 0.00 0.00 0.00 4.20
88 98 1.156736 GAAAGCTTTGCGCCTCAGTA 58.843 50.000 18.30 0.00 40.39 2.74
127 137 1.374758 CTCGTGGAGGGCAAGACAC 60.375 63.158 0.00 0.00 0.00 3.67
128 138 2.583441 CCTCGTGGAGGGCAAGACA 61.583 63.158 3.68 0.00 45.43 3.41
241 269 1.535930 ATGTGGGTGGCCATTTGCA 60.536 52.632 9.72 7.13 43.89 4.08
245 273 1.305213 GGTCATGTGGGTGGCCATT 60.305 57.895 9.72 0.00 43.43 3.16
262 291 0.099791 GTGTTGGTGGTGTGTTTCGG 59.900 55.000 0.00 0.00 0.00 4.30
283 312 2.342279 GCGAGTGGTGTGGCACTA 59.658 61.111 19.83 2.23 34.40 2.74
284 313 4.626081 GGCGAGTGGTGTGGCACT 62.626 66.667 19.83 0.00 34.40 4.40
294 323 1.272781 GATTGACTCTTCGGCGAGTG 58.727 55.000 10.46 7.69 43.91 3.51
299 353 0.389948 ACACGGATTGACTCTTCGGC 60.390 55.000 0.00 0.00 0.00 5.54
302 356 2.541556 GGCTACACGGATTGACTCTTC 58.458 52.381 0.00 0.00 0.00 2.87
308 362 2.185867 GCGGGCTACACGGATTGA 59.814 61.111 0.00 0.00 0.00 2.57
314 368 4.155733 TGGATGGCGGGCTACACG 62.156 66.667 2.38 0.00 0.00 4.49
340 395 4.759205 GGCCAAGAATGCCGGGGT 62.759 66.667 2.18 0.00 39.48 4.95
378 434 0.245539 ATGGTCGGTGGTTGTAGACG 59.754 55.000 0.00 0.00 34.68 4.18
418 475 3.245984 TGTCCAGGGATGAGAAGGAGTTA 60.246 47.826 0.00 0.00 0.00 2.24
469 528 0.814010 GCTAATGGGGTGCGATTCGT 60.814 55.000 8.03 0.00 0.00 3.85
474 533 1.765904 TCAATAGCTAATGGGGTGCGA 59.234 47.619 8.92 0.00 0.00 5.10
476 535 2.230660 GGTCAATAGCTAATGGGGTGC 58.769 52.381 8.92 0.00 0.00 5.01
508 567 1.786049 CGGGCTCTCGATGATCGTCA 61.786 60.000 15.06 1.68 41.35 4.35
523 583 3.227792 GAGTGGGGATCGATCGGGC 62.228 68.421 18.81 7.43 0.00 6.13
526 586 0.459899 TGTTGAGTGGGGATCGATCG 59.540 55.000 18.81 9.36 0.00 3.69
527 587 1.482593 ACTGTTGAGTGGGGATCGATC 59.517 52.381 17.36 17.36 0.00 3.69
530 590 3.143675 CACTGTTGAGTGGGGATCG 57.856 57.895 0.00 0.00 45.26 3.69
540 600 0.754957 CCAGTTTGGGCCACTGTTGA 60.755 55.000 19.41 0.00 40.19 3.18
545 605 2.113139 CGTCCAGTTTGGGCCACT 59.887 61.111 5.23 0.00 39.48 4.00
547 607 4.278513 CCCGTCCAGTTTGGGCCA 62.279 66.667 0.00 0.00 39.48 5.36
588 648 3.662290 GGCACACCCTTTGTCCATA 57.338 52.632 0.00 0.00 35.67 2.74
609 669 1.067974 TGTTATGGCCTATGTCGTCGG 59.932 52.381 3.32 0.00 0.00 4.79
612 672 1.752498 TCGTGTTATGGCCTATGTCGT 59.248 47.619 3.32 0.00 0.00 4.34
614 674 4.054780 TCTTCGTGTTATGGCCTATGTC 57.945 45.455 3.32 0.00 0.00 3.06
615 675 4.481368 TTCTTCGTGTTATGGCCTATGT 57.519 40.909 3.32 0.00 0.00 2.29
626 686 0.400594 CCCTCCCCTTTCTTCGTGTT 59.599 55.000 0.00 0.00 0.00 3.32
630 690 1.198759 TGGTCCCTCCCCTTTCTTCG 61.199 60.000 0.00 0.00 34.77 3.79
633 694 0.121197 TCATGGTCCCTCCCCTTTCT 59.879 55.000 0.00 0.00 34.77 2.52
636 697 1.214992 GGTTCATGGTCCCTCCCCTT 61.215 60.000 0.00 0.00 34.77 3.95
637 698 1.619669 GGTTCATGGTCCCTCCCCT 60.620 63.158 0.00 0.00 34.77 4.79
653 714 2.746375 GGATCCACCGCCAGATGGT 61.746 63.158 6.95 0.00 41.47 3.55
665 726 3.458163 GTCTCGGGTGCGGATCCA 61.458 66.667 13.41 0.00 0.00 3.41
681 742 4.574674 TTTCTCTGGGTATGATTGCTGT 57.425 40.909 0.00 0.00 0.00 4.40
688 749 4.927267 ACCAACATTTCTCTGGGTATGA 57.073 40.909 0.00 0.00 34.31 2.15
691 752 3.521937 CCCTACCAACATTTCTCTGGGTA 59.478 47.826 0.00 0.00 34.31 3.69
693 754 2.308866 ACCCTACCAACATTTCTCTGGG 59.691 50.000 0.00 0.00 38.13 4.45
703 764 7.093965 AGGAACTTATAAAACCCTACCAACA 57.906 36.000 0.00 0.00 27.25 3.33
872 1032 3.775202 TCGTGTGAACAATGGTTTTTGG 58.225 40.909 0.00 0.00 37.36 3.28
873 1033 5.769967 TTTCGTGTGAACAATGGTTTTTG 57.230 34.783 0.00 0.00 37.36 2.44
891 1051 5.230942 GGACACATAGGGTAGATGATTTCG 58.769 45.833 0.00 0.00 0.00 3.46
1189 1358 1.002134 GCCTGGTAAGCCTGCTTCA 60.002 57.895 7.81 0.48 37.47 3.02
1226 1395 2.060980 CCAGTCGGAGGGAAGGGAG 61.061 68.421 0.00 0.00 0.00 4.30
1260 1429 4.436998 CAGCGTCGGGTGGACCTC 62.437 72.222 0.00 0.00 42.99 3.85
1269 1438 3.121030 CCAAAGGAGCAGCGTCGG 61.121 66.667 0.00 0.00 0.00 4.79
1352 1521 3.163594 GGCTGAATTCGATTTGTTCACG 58.836 45.455 0.04 0.00 0.00 4.35
1359 1528 5.884792 AGAAAGATCTGGCTGAATTCGATTT 59.115 36.000 0.00 0.00 33.59 2.17
1406 1575 5.222007 ACAATCCTATCAATGGGATGGAGTC 60.222 44.000 14.79 0.00 46.04 3.36
1534 1704 2.142357 GAGCAACCGAAACAAGGGGC 62.142 60.000 0.00 0.00 34.68 5.80
1605 1777 4.502950 GGAACATGGGATTTCAGCAACAAA 60.503 41.667 0.00 0.00 0.00 2.83
1648 1820 6.481954 AACACGAACATTGTCCTCTTATTC 57.518 37.500 0.00 0.00 0.00 1.75
1651 1823 5.120399 ACAAACACGAACATTGTCCTCTTA 58.880 37.500 0.00 0.00 32.02 2.10
1659 1831 5.753713 TGTCAAAACAAACACGAACATTG 57.246 34.783 0.00 0.00 30.70 2.82
1664 1836 7.169982 AGTTCAAAATGTCAAAACAAACACGAA 59.830 29.630 0.00 0.00 39.30 3.85
1667 1839 7.530190 CACAGTTCAAAATGTCAAAACAAACAC 59.470 33.333 0.00 0.00 39.30 3.32
1711 1883 1.093159 GCAACATGAGCTCTCAAGGG 58.907 55.000 16.19 1.54 43.58 3.95
1772 1946 9.383519 GAGATGATTTAAAGACCACTTGATACA 57.616 33.333 0.00 0.00 36.39 2.29
1798 1972 3.938963 TCCAGCAATTTTAGCTCGTTAGG 59.061 43.478 0.00 0.00 41.14 2.69
1851 2027 8.891720 CCCAATGATGAAAGAAAAAGAAAAACA 58.108 29.630 0.00 0.00 0.00 2.83
1852 2028 8.344831 CCCCAATGATGAAAGAAAAAGAAAAAC 58.655 33.333 0.00 0.00 0.00 2.43
1858 2034 5.743636 TCCCCCAATGATGAAAGAAAAAG 57.256 39.130 0.00 0.00 0.00 2.27
1917 2095 7.814587 TGACGACTATAGGAAATGCATTAGATG 59.185 37.037 13.39 5.97 0.00 2.90
1978 2156 6.789457 ACATATAAGATGGAGGGAGACATTGA 59.211 38.462 0.00 0.00 0.00 2.57
2039 2223 5.871396 TTAATCCATGTACTCCCTCTGTC 57.129 43.478 0.00 0.00 0.00 3.51
2042 2226 7.885399 GCATTATTTAATCCATGTACTCCCTCT 59.115 37.037 0.00 0.00 0.00 3.69
2044 2228 7.667219 CAGCATTATTTAATCCATGTACTCCCT 59.333 37.037 0.00 0.00 0.00 4.20
2078 2262 8.180920 AGCGCAGTTGATTTAAACAAAATTTTT 58.819 25.926 11.47 0.00 37.93 1.94
2079 2263 7.693020 AGCGCAGTTGATTTAAACAAAATTTT 58.307 26.923 11.47 0.00 37.93 1.82
2080 2264 7.245419 AGCGCAGTTGATTTAAACAAAATTT 57.755 28.000 11.47 0.00 37.93 1.82
2081 2265 6.843069 AGCGCAGTTGATTTAAACAAAATT 57.157 29.167 11.47 0.00 37.93 1.82
2082 2266 7.114811 CAGTAGCGCAGTTGATTTAAACAAAAT 59.885 33.333 11.47 0.00 40.59 1.82
2102 2286 7.736447 ATAAATCAATCAAGTAGCCAGTAGC 57.264 36.000 0.00 0.00 44.25 3.58
2145 2329 5.176774 CACGAACAGTATTGCTCAGTTAACA 59.823 40.000 8.61 0.00 0.00 2.41
2150 2334 2.069273 GCACGAACAGTATTGCTCAGT 58.931 47.619 0.00 0.00 32.00 3.41
2710 2895 3.341823 CCTATCATGGTAGCAGATTGGC 58.658 50.000 7.55 0.00 30.29 4.52
2834 3019 5.685861 GCTGATATTGTTCTCACCCTCATCA 60.686 44.000 0.00 0.00 0.00 3.07
2894 3079 0.461961 GAAGGTCGACATCCTCCAGG 59.538 60.000 18.91 0.00 33.76 4.45
2900 3085 1.808411 TTTGCAGAAGGTCGACATCC 58.192 50.000 18.91 0.00 0.00 3.51
2909 3094 4.154737 TCTTCATCGTGATTTTGCAGAAGG 59.845 41.667 0.00 0.00 33.81 3.46
2972 3157 1.377202 TTCATCCGCTCCTGGTTGC 60.377 57.895 0.00 0.00 0.00 4.17
2977 3162 2.202932 CGGGTTCATCCGCTCCTG 60.203 66.667 0.00 0.00 43.71 3.86
2984 3169 0.605319 TTGACTGTGCGGGTTCATCC 60.605 55.000 0.00 0.00 0.00 3.51
3110 3295 4.180817 CGTCCTTTTTGGTTTGCTCTTTT 58.819 39.130 0.00 0.00 37.07 2.27
3116 3301 1.212455 CGCCGTCCTTTTTGGTTTGC 61.212 55.000 0.00 0.00 37.07 3.68
3377 3562 1.263356 CTCCGTACCAAGGACTCCAA 58.737 55.000 0.00 0.00 33.58 3.53
3480 3665 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
3481 3666 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
3482 3667 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
3483 3668 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
3484 3669 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
3498 3683 8.200792 CCTAGTGCAATCTCTACAAAGACTTAT 58.799 37.037 0.00 0.00 0.00 1.73
3499 3684 7.178628 ACCTAGTGCAATCTCTACAAAGACTTA 59.821 37.037 0.00 0.00 0.00 2.24
3500 3685 6.014156 ACCTAGTGCAATCTCTACAAAGACTT 60.014 38.462 0.00 0.00 0.00 3.01
3501 3686 5.482175 ACCTAGTGCAATCTCTACAAAGACT 59.518 40.000 0.00 0.00 0.00 3.24
3502 3687 5.578727 CACCTAGTGCAATCTCTACAAAGAC 59.421 44.000 0.00 0.00 0.00 3.01
3503 3688 5.337571 CCACCTAGTGCAATCTCTACAAAGA 60.338 44.000 0.00 0.00 31.34 2.52
3504 3689 4.872691 CCACCTAGTGCAATCTCTACAAAG 59.127 45.833 0.00 0.00 31.34 2.77
3505 3690 4.530553 TCCACCTAGTGCAATCTCTACAAA 59.469 41.667 0.00 0.00 31.34 2.83
3506 3691 4.081642 GTCCACCTAGTGCAATCTCTACAA 60.082 45.833 0.00 0.00 31.34 2.41
3507 3692 3.447586 GTCCACCTAGTGCAATCTCTACA 59.552 47.826 0.00 0.00 31.34 2.74
3508 3693 3.702045 AGTCCACCTAGTGCAATCTCTAC 59.298 47.826 0.00 0.00 31.34 2.59
3509 3694 3.982516 AGTCCACCTAGTGCAATCTCTA 58.017 45.455 0.00 0.00 31.34 2.43
3510 3695 2.826488 AGTCCACCTAGTGCAATCTCT 58.174 47.619 0.00 0.00 31.34 3.10
3511 3696 3.447586 TGTAGTCCACCTAGTGCAATCTC 59.552 47.826 0.00 0.00 31.34 2.75
3512 3697 3.441101 TGTAGTCCACCTAGTGCAATCT 58.559 45.455 0.00 0.00 31.34 2.40
3513 3698 3.887621 TGTAGTCCACCTAGTGCAATC 57.112 47.619 0.00 0.00 31.34 2.67
3514 3699 4.202121 CGTATGTAGTCCACCTAGTGCAAT 60.202 45.833 0.00 0.00 31.34 3.56
3515 3700 3.129813 CGTATGTAGTCCACCTAGTGCAA 59.870 47.826 0.00 0.00 31.34 4.08
3516 3701 2.686405 CGTATGTAGTCCACCTAGTGCA 59.314 50.000 0.00 0.00 31.34 4.57
3517 3702 2.034305 CCGTATGTAGTCCACCTAGTGC 59.966 54.545 0.00 0.00 31.34 4.40
3518 3703 3.548770 TCCGTATGTAGTCCACCTAGTG 58.451 50.000 0.00 0.00 0.00 2.74
3519 3704 3.939740 TCCGTATGTAGTCCACCTAGT 57.060 47.619 0.00 0.00 0.00 2.57
3520 3705 6.889301 TTATTCCGTATGTAGTCCACCTAG 57.111 41.667 0.00 0.00 0.00 3.02
3521 3706 7.658525 TTTTATTCCGTATGTAGTCCACCTA 57.341 36.000 0.00 0.00 0.00 3.08
3522 3707 6.549433 TTTTATTCCGTATGTAGTCCACCT 57.451 37.500 0.00 0.00 0.00 4.00
3523 3708 6.987992 TCATTTTATTCCGTATGTAGTCCACC 59.012 38.462 0.00 0.00 0.00 4.61
3524 3709 8.428186 TTCATTTTATTCCGTATGTAGTCCAC 57.572 34.615 0.00 0.00 0.00 4.02
3525 3710 9.051679 CATTCATTTTATTCCGTATGTAGTCCA 57.948 33.333 0.00 0.00 0.00 4.02
3526 3711 9.268268 TCATTCATTTTATTCCGTATGTAGTCC 57.732 33.333 0.00 0.00 0.00 3.85
3564 3749 9.842775 CCCATACAGATGTATATAGATGCATTT 57.157 33.333 0.00 0.00 38.38 2.32
3565 3750 8.435187 CCCCATACAGATGTATATAGATGCATT 58.565 37.037 0.00 0.00 38.38 3.56
3566 3751 7.570232 ACCCCATACAGATGTATATAGATGCAT 59.430 37.037 0.00 0.00 40.68 3.96
3567 3752 6.902974 ACCCCATACAGATGTATATAGATGCA 59.097 38.462 5.21 0.00 39.06 3.96
3568 3753 7.366847 ACCCCATACAGATGTATATAGATGC 57.633 40.000 5.21 0.00 39.06 3.91
3575 3760 8.537016 GCACTATAAACCCCATACAGATGTATA 58.463 37.037 5.21 0.00 39.06 1.47
3576 3761 7.017155 TGCACTATAAACCCCATACAGATGTAT 59.983 37.037 0.00 0.00 41.58 2.29
3577 3762 6.327887 TGCACTATAAACCCCATACAGATGTA 59.672 38.462 0.00 0.00 34.67 2.29
3578 3763 5.131977 TGCACTATAAACCCCATACAGATGT 59.868 40.000 0.00 0.00 0.00 3.06
3579 3764 5.620206 TGCACTATAAACCCCATACAGATG 58.380 41.667 0.00 0.00 0.00 2.90
3580 3765 5.904984 TGCACTATAAACCCCATACAGAT 57.095 39.130 0.00 0.00 0.00 2.90
3581 3766 5.702065 TTGCACTATAAACCCCATACAGA 57.298 39.130 0.00 0.00 0.00 3.41
3582 3767 6.299141 AGATTGCACTATAAACCCCATACAG 58.701 40.000 0.00 0.00 0.00 2.74
3583 3768 6.101150 AGAGATTGCACTATAAACCCCATACA 59.899 38.462 0.00 0.00 0.00 2.29
3584 3769 6.534634 AGAGATTGCACTATAAACCCCATAC 58.465 40.000 0.00 0.00 0.00 2.39
3585 3770 6.763715 AGAGATTGCACTATAAACCCCATA 57.236 37.500 0.00 0.00 0.00 2.74
3586 3771 5.653255 AGAGATTGCACTATAAACCCCAT 57.347 39.130 0.00 0.00 0.00 4.00
3587 3772 5.427157 TGTAGAGATTGCACTATAAACCCCA 59.573 40.000 0.00 0.00 0.00 4.96
3588 3773 5.925509 TGTAGAGATTGCACTATAAACCCC 58.074 41.667 0.00 0.00 0.00 4.95
3589 3774 7.769044 TCTTTGTAGAGATTGCACTATAAACCC 59.231 37.037 0.00 0.00 29.98 4.11
3590 3775 8.604890 GTCTTTGTAGAGATTGCACTATAAACC 58.395 37.037 0.00 0.00 29.98 3.27
3591 3776 9.372369 AGTCTTTGTAGAGATTGCACTATAAAC 57.628 33.333 0.00 0.00 29.98 2.01
3592 3777 9.944376 AAGTCTTTGTAGAGATTGCACTATAAA 57.056 29.630 0.00 0.00 31.39 1.40
3595 3780 8.531982 TGTAAGTCTTTGTAGAGATTGCACTAT 58.468 33.333 0.00 0.00 0.00 2.12
3596 3781 7.892609 TGTAAGTCTTTGTAGAGATTGCACTA 58.107 34.615 0.00 0.00 0.00 2.74
3597 3782 6.759272 TGTAAGTCTTTGTAGAGATTGCACT 58.241 36.000 0.00 0.00 0.00 4.40
3598 3783 7.602517 ATGTAAGTCTTTGTAGAGATTGCAC 57.397 36.000 0.00 0.00 30.81 4.57
3599 3784 8.621532 AAATGTAAGTCTTTGTAGAGATTGCA 57.378 30.769 0.00 0.00 31.83 4.08
3604 3789 9.924650 GTTCCTAAATGTAAGTCTTTGTAGAGA 57.075 33.333 0.00 0.00 0.00 3.10
3605 3790 8.861101 CGTTCCTAAATGTAAGTCTTTGTAGAG 58.139 37.037 0.00 0.00 0.00 2.43
3606 3791 7.816031 CCGTTCCTAAATGTAAGTCTTTGTAGA 59.184 37.037 0.00 0.00 0.00 2.59
3607 3792 7.816031 TCCGTTCCTAAATGTAAGTCTTTGTAG 59.184 37.037 0.00 0.00 0.00 2.74
3608 3793 7.669427 TCCGTTCCTAAATGTAAGTCTTTGTA 58.331 34.615 0.00 0.00 0.00 2.41
3609 3794 6.527423 TCCGTTCCTAAATGTAAGTCTTTGT 58.473 36.000 0.00 0.00 0.00 2.83
3610 3795 6.092259 CCTCCGTTCCTAAATGTAAGTCTTTG 59.908 42.308 0.00 0.00 0.00 2.77
3611 3796 6.171213 CCTCCGTTCCTAAATGTAAGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
3612 3797 5.338137 CCCTCCGTTCCTAAATGTAAGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
3613 3798 4.161754 CCCTCCGTTCCTAAATGTAAGTCT 59.838 45.833 0.00 0.00 0.00 3.24
3614 3799 4.161001 TCCCTCCGTTCCTAAATGTAAGTC 59.839 45.833 0.00 0.00 0.00 3.01
3615 3800 4.098894 TCCCTCCGTTCCTAAATGTAAGT 58.901 43.478 0.00 0.00 0.00 2.24
3616 3801 4.161754 ACTCCCTCCGTTCCTAAATGTAAG 59.838 45.833 0.00 0.00 0.00 2.34
3617 3802 4.098894 ACTCCCTCCGTTCCTAAATGTAA 58.901 43.478 0.00 0.00 0.00 2.41
3618 3803 3.716431 ACTCCCTCCGTTCCTAAATGTA 58.284 45.455 0.00 0.00 0.00 2.29
3619 3804 2.547990 ACTCCCTCCGTTCCTAAATGT 58.452 47.619 0.00 0.00 0.00 2.71
3620 3805 4.957684 ATACTCCCTCCGTTCCTAAATG 57.042 45.455 0.00 0.00 0.00 2.32
3621 3806 5.397559 CCAAATACTCCCTCCGTTCCTAAAT 60.398 44.000 0.00 0.00 0.00 1.40
3622 3807 4.080751 CCAAATACTCCCTCCGTTCCTAAA 60.081 45.833 0.00 0.00 0.00 1.85
3623 3808 3.453353 CCAAATACTCCCTCCGTTCCTAA 59.547 47.826 0.00 0.00 0.00 2.69
3624 3809 3.036091 CCAAATACTCCCTCCGTTCCTA 58.964 50.000 0.00 0.00 0.00 2.94
3625 3810 1.838077 CCAAATACTCCCTCCGTTCCT 59.162 52.381 0.00 0.00 0.00 3.36
3626 3811 1.558294 ACCAAATACTCCCTCCGTTCC 59.442 52.381 0.00 0.00 0.00 3.62
3627 3812 3.055312 AGAACCAAATACTCCCTCCGTTC 60.055 47.826 0.00 0.00 0.00 3.95
3628 3813 2.910977 AGAACCAAATACTCCCTCCGTT 59.089 45.455 0.00 0.00 0.00 4.44
3629 3814 2.236395 CAGAACCAAATACTCCCTCCGT 59.764 50.000 0.00 0.00 0.00 4.69
3630 3815 2.236395 ACAGAACCAAATACTCCCTCCG 59.764 50.000 0.00 0.00 0.00 4.63
3631 3816 3.263425 TCACAGAACCAAATACTCCCTCC 59.737 47.826 0.00 0.00 0.00 4.30
3632 3817 4.553330 TCACAGAACCAAATACTCCCTC 57.447 45.455 0.00 0.00 0.00 4.30
3633 3818 5.520748 AATCACAGAACCAAATACTCCCT 57.479 39.130 0.00 0.00 0.00 4.20
3634 3819 6.415573 ACTAATCACAGAACCAAATACTCCC 58.584 40.000 0.00 0.00 0.00 4.30
3635 3820 7.224949 GCTACTAATCACAGAACCAAATACTCC 59.775 40.741 0.00 0.00 0.00 3.85
3636 3821 7.043325 CGCTACTAATCACAGAACCAAATACTC 60.043 40.741 0.00 0.00 0.00 2.59
3637 3822 6.757010 CGCTACTAATCACAGAACCAAATACT 59.243 38.462 0.00 0.00 0.00 2.12
3638 3823 6.018994 CCGCTACTAATCACAGAACCAAATAC 60.019 42.308 0.00 0.00 0.00 1.89
3639 3824 6.046593 CCGCTACTAATCACAGAACCAAATA 58.953 40.000 0.00 0.00 0.00 1.40
3640 3825 4.876107 CCGCTACTAATCACAGAACCAAAT 59.124 41.667 0.00 0.00 0.00 2.32
3667 3852 9.575783 GACCAAACAACAAAAGTGATAAACTAA 57.424 29.630 0.00 0.00 38.56 2.24
3672 3857 7.164230 ACAGACCAAACAACAAAAGTGATAA 57.836 32.000 0.00 0.00 0.00 1.75
3762 3949 6.090483 TCAAAAAGAAAATCCATGGCGTTA 57.910 33.333 6.96 0.00 0.00 3.18
3790 4025 9.346005 AGCTGTCAATTTCATGATGTCAATATA 57.654 29.630 0.00 0.00 0.00 0.86
3813 4048 3.416156 GAAAATCTGTGGAAGGTGAGCT 58.584 45.455 0.00 0.00 0.00 4.09
3814 4049 2.160417 CGAAAATCTGTGGAAGGTGAGC 59.840 50.000 0.00 0.00 0.00 4.26
3827 4062 6.599244 TGATTTTATCTCTGCACCGAAAATCT 59.401 34.615 18.59 0.00 41.00 2.40
3828 4063 6.688813 GTGATTTTATCTCTGCACCGAAAATC 59.311 38.462 14.60 14.60 40.88 2.17
3909 4177 1.092921 TACCGATGGCCACGCAAATC 61.093 55.000 8.16 0.00 0.00 2.17
3946 4214 1.507630 CGTGTCCACCGGTATTCGA 59.492 57.895 6.87 0.00 42.43 3.71
3947 4215 2.162754 GCGTGTCCACCGGTATTCG 61.163 63.158 6.87 9.54 38.88 3.34
3964 4232 6.293353 CCATTTGGAACAGGTGTAAATTTTGC 60.293 38.462 0.00 0.00 42.39 3.68
3982 4250 2.758423 GTTGTACTAAGGCCCCATTTGG 59.242 50.000 0.00 0.00 0.00 3.28
4035 4303 3.065306 CTGGCCTCCGGTTGTACA 58.935 61.111 3.32 0.00 0.00 2.90
4066 4334 1.202582 CTCCCCGTGTGAGAGTTACTG 59.797 57.143 0.00 0.00 31.26 2.74
4081 4360 3.570125 CAGTTTTGAAGAACTTCCTCCCC 59.430 47.826 11.30 0.00 37.76 4.81
4108 4387 5.299782 ACTTCAAAACCCGCTTACAATAACA 59.700 36.000 0.00 0.00 0.00 2.41
4109 4388 5.765176 ACTTCAAAACCCGCTTACAATAAC 58.235 37.500 0.00 0.00 0.00 1.89
4111 4390 7.690952 AATACTTCAAAACCCGCTTACAATA 57.309 32.000 0.00 0.00 0.00 1.90
4202 4489 9.415544 CTTTTGGAAGAAAATGGAAGAATAGTG 57.584 33.333 0.00 0.00 34.71 2.74
4267 4554 5.774690 TGCACATTGGGTTCTTTCTTAGATT 59.225 36.000 0.00 0.00 31.54 2.40
4314 4710 3.543494 GCGCATTGTTGTTATCATCACAC 59.457 43.478 0.30 0.00 0.00 3.82
4326 4722 7.010367 ACCTGAATTATATTTTGCGCATTGTTG 59.990 33.333 12.75 0.00 0.00 3.33
4359 4759 1.671328 GCCGCCCTCTTTTCTATTGAC 59.329 52.381 0.00 0.00 0.00 3.18
4364 4764 0.971959 TACCGCCGCCCTCTTTTCTA 60.972 55.000 0.00 0.00 0.00 2.10
4368 4768 4.091939 GGTACCGCCGCCCTCTTT 62.092 66.667 0.00 0.00 0.00 2.52
4381 4781 1.000896 ATGCCAGTTGCCAGGGTAC 60.001 57.895 0.00 0.00 40.16 3.34
4411 4811 1.876799 CATTTGTTGTCCTACACGGCA 59.123 47.619 0.00 0.00 0.00 5.69
4415 4815 6.515272 AATCATCCATTTGTTGTCCTACAC 57.485 37.500 0.00 0.00 0.00 2.90
4416 4816 5.353956 CGAATCATCCATTTGTTGTCCTACA 59.646 40.000 0.00 0.00 0.00 2.74
4417 4817 5.220854 CCGAATCATCCATTTGTTGTCCTAC 60.221 44.000 0.00 0.00 0.00 3.18
4446 4846 2.902423 TTTGAAGCCGGGTGCAGTGT 62.902 55.000 15.33 0.00 44.83 3.55
4458 4858 4.325472 GCTGTTGTATGAGCATTTTGAAGC 59.675 41.667 0.00 0.00 35.15 3.86
4505 4905 9.128107 CATTGCACTGAAATACTATTTCGTTTT 57.872 29.630 14.23 0.00 0.00 2.43
4506 4906 7.754924 CCATTGCACTGAAATACTATTTCGTTT 59.245 33.333 5.49 1.90 0.00 3.60
4511 4911 6.377996 TCTGCCATTGCACTGAAATACTATTT 59.622 34.615 5.49 0.00 44.23 1.40
4524 4924 1.467734 CTGAACTCTCTGCCATTGCAC 59.532 52.381 0.00 0.00 44.23 4.57
4534 4934 0.755079 TGTGCACTGCTGAACTCTCT 59.245 50.000 19.41 0.00 0.00 3.10
4535 4935 1.805869 ATGTGCACTGCTGAACTCTC 58.194 50.000 19.41 0.00 0.00 3.20
4577 4977 7.546358 TGAAAAATATGGAATACTGGTTGCAG 58.454 34.615 0.00 0.00 32.87 4.41
4583 4983 6.925165 GGCACATGAAAAATATGGAATACTGG 59.075 38.462 0.00 0.00 0.00 4.00
4587 4987 7.041167 CGAGAGGCACATGAAAAATATGGAATA 60.041 37.037 0.00 0.00 0.00 1.75
4601 5001 2.002586 CTGGTTAACGAGAGGCACATG 58.997 52.381 11.88 0.00 0.00 3.21
4602 5002 1.066143 CCTGGTTAACGAGAGGCACAT 60.066 52.381 18.18 0.00 0.00 3.21
4603 5003 0.320374 CCTGGTTAACGAGAGGCACA 59.680 55.000 18.18 0.00 0.00 4.57
4604 5004 3.139029 CCTGGTTAACGAGAGGCAC 57.861 57.895 18.18 0.00 0.00 5.01
4606 5006 4.203618 GCCTGGTTAACGAGAGGC 57.796 61.111 18.18 19.26 44.10 4.70
4662 5071 2.612972 GGTGACATTGTGACGACCTCAT 60.613 50.000 0.00 0.00 0.00 2.90
4669 5078 0.943673 TGCAAGGTGACATTGTGACG 59.056 50.000 11.78 0.00 0.00 4.35
4687 5096 1.081242 GTGTCCATGCGGCACTTTG 60.081 57.895 4.03 0.00 36.77 2.77
4696 5105 1.094073 CAGCTAGCAGGTGTCCATGC 61.094 60.000 18.83 0.00 38.80 4.06
4716 5125 3.119424 TCATGCAATGTGTGTGCCAATAG 60.119 43.478 0.00 0.00 46.80 1.73
4748 5157 6.075762 TCATGCAAATGTATGGTAGATTGC 57.924 37.500 10.87 0.00 38.44 3.56
4798 5208 0.994247 TGTGGGTTCTGGCATGATCT 59.006 50.000 0.00 0.00 0.00 2.75
4810 5220 8.850156 GTTAGAATGCTATAATGATTGTGGGTT 58.150 33.333 0.00 0.00 0.00 4.11
4890 5300 4.204799 GACTGGTTGAAGTTAAACCCACT 58.795 43.478 18.13 1.91 45.49 4.00
4894 5304 4.022329 CCATGGACTGGTTGAAGTTAAACC 60.022 45.833 14.61 14.61 46.13 3.27
4926 5336 7.036996 TGAACTGTTTTGCATCTTGTAATGA 57.963 32.000 0.00 0.00 0.00 2.57
5023 5433 4.000988 GTCCATCACAGGTGAAATTACGT 58.999 43.478 6.17 0.00 43.58 3.57
5024 5434 4.000325 TGTCCATCACAGGTGAAATTACG 59.000 43.478 6.17 0.00 43.58 3.18
5025 5435 5.335661 GGTTGTCCATCACAGGTGAAATTAC 60.336 44.000 6.17 3.93 43.58 1.89
5026 5436 4.764823 GGTTGTCCATCACAGGTGAAATTA 59.235 41.667 6.17 0.00 43.58 1.40
5027 5437 3.573967 GGTTGTCCATCACAGGTGAAATT 59.426 43.478 6.17 0.00 43.58 1.82
5028 5438 3.157087 GGTTGTCCATCACAGGTGAAAT 58.843 45.455 6.17 0.00 43.58 2.17
5060 5470 2.315155 ACAGAGGGAGTACATGGGTAGT 59.685 50.000 0.00 0.00 35.85 2.73
5083 5493 9.654663 AGTGATCTAAACGCTCTTATTTTAGTT 57.345 29.630 0.00 0.00 35.30 2.24
5133 5543 7.512746 TGCAGTACTCCCTCCATAAACTAATAT 59.487 37.037 0.00 0.00 0.00 1.28
5134 5544 6.842280 TGCAGTACTCCCTCCATAAACTAATA 59.158 38.462 0.00 0.00 0.00 0.98
5137 5547 4.616553 TGCAGTACTCCCTCCATAAACTA 58.383 43.478 0.00 0.00 0.00 2.24
5139 5549 3.906720 TGCAGTACTCCCTCCATAAAC 57.093 47.619 0.00 0.00 0.00 2.01
5140 5550 6.763715 AATATGCAGTACTCCCTCCATAAA 57.236 37.500 0.00 0.00 0.00 1.40
5143 5553 5.653255 AAAATATGCAGTACTCCCTCCAT 57.347 39.130 0.00 0.00 0.00 3.41
5144 5554 6.569127 TTAAAATATGCAGTACTCCCTCCA 57.431 37.500 0.00 0.00 0.00 3.86
5224 5811 4.072839 CCCCTGAGACCTAAAACAACTTC 58.927 47.826 0.00 0.00 0.00 3.01
5248 5835 5.128663 TCAGGCATATAGTGTGAGTGCTTTA 59.871 40.000 0.00 0.00 36.15 1.85
5267 5932 0.178970 ATTCCCATCAGGCATCAGGC 60.179 55.000 0.00 0.00 43.74 4.85
5268 5933 3.181436 ACTTATTCCCATCAGGCATCAGG 60.181 47.826 0.00 0.00 34.51 3.86
5269 5934 4.096190 ACTTATTCCCATCAGGCATCAG 57.904 45.455 0.00 0.00 34.51 2.90
5270 5935 4.505566 GCTACTTATTCCCATCAGGCATCA 60.506 45.833 0.00 0.00 34.51 3.07
5271 5936 4.006319 GCTACTTATTCCCATCAGGCATC 58.994 47.826 0.00 0.00 34.51 3.91
5305 5970 6.263168 ACATTCGACAGTCTCAAATTCCTTTT 59.737 34.615 0.00 0.00 0.00 2.27
5306 5971 5.765182 ACATTCGACAGTCTCAAATTCCTTT 59.235 36.000 0.00 0.00 0.00 3.11
5312 5977 5.120830 GCTGTAACATTCGACAGTCTCAAAT 59.879 40.000 0.00 0.00 44.10 2.32
5315 5980 3.575630 GCTGTAACATTCGACAGTCTCA 58.424 45.455 0.00 0.00 44.10 3.27
5325 5990 6.925610 TGATAACTGATGGCTGTAACATTC 57.074 37.500 0.00 0.00 0.00 2.67
5330 5995 6.883756 TGACATTTGATAACTGATGGCTGTAA 59.116 34.615 0.00 0.00 0.00 2.41
5334 5999 6.839124 TTTGACATTTGATAACTGATGGCT 57.161 33.333 0.00 0.00 0.00 4.75
5355 6020 9.682465 GGGAGTAGAAATAATGAGTAACCTTTT 57.318 33.333 0.00 0.00 0.00 2.27
5364 6029 7.070571 AGGAACAGAGGGAGTAGAAATAATGAG 59.929 40.741 0.00 0.00 0.00 2.90
5397 6062 9.010029 GTGGTAGTCCATTTGAAATCTCTAAAA 57.990 33.333 0.00 0.00 46.20 1.52
5398 6063 8.160765 TGTGGTAGTCCATTTGAAATCTCTAAA 58.839 33.333 0.00 0.00 46.20 1.85
5399 6064 7.685481 TGTGGTAGTCCATTTGAAATCTCTAA 58.315 34.615 0.00 0.00 46.20 2.10
5400 6065 7.252612 TGTGGTAGTCCATTTGAAATCTCTA 57.747 36.000 0.00 0.00 46.20 2.43
5401 6066 6.126863 TGTGGTAGTCCATTTGAAATCTCT 57.873 37.500 0.00 0.00 46.20 3.10
5403 6068 7.177878 AGAATGTGGTAGTCCATTTGAAATCT 58.822 34.615 0.00 0.00 46.20 2.40
5406 6071 9.613428 CTATAGAATGTGGTAGTCCATTTGAAA 57.387 33.333 0.00 0.00 46.20 2.69
5407 6072 8.988060 TCTATAGAATGTGGTAGTCCATTTGAA 58.012 33.333 0.00 0.00 46.20 2.69
5408 6073 8.421784 GTCTATAGAATGTGGTAGTCCATTTGA 58.578 37.037 3.40 0.00 46.20 2.69
5409 6074 8.424918 AGTCTATAGAATGTGGTAGTCCATTTG 58.575 37.037 3.40 0.00 46.20 2.32
5411 6076 8.424918 CAAGTCTATAGAATGTGGTAGTCCATT 58.575 37.037 3.40 0.00 46.20 3.16
5414 6079 7.584122 TCAAGTCTATAGAATGTGGTAGTCC 57.416 40.000 3.40 0.00 0.00 3.85
5418 6083 9.817809 GTTTGATCAAGTCTATAGAATGTGGTA 57.182 33.333 8.41 0.00 0.00 3.25
5497 6399 7.782049 TGCGATCGATCTTATTATAATCCCTT 58.218 34.615 21.57 0.00 0.00 3.95
5503 6405 9.692749 AGTTTCTTGCGATCGATCTTATTATAA 57.307 29.630 21.57 6.67 0.00 0.98
5559 6461 2.866762 CAAGCTAGCGTTTCCTGGTATC 59.133 50.000 9.55 0.00 0.00 2.24
5566 6468 3.995048 ACTTTCTACAAGCTAGCGTTTCC 59.005 43.478 9.55 0.00 0.00 3.13
5611 6513 8.622948 ATTTAGTAAAGAAACTCCTTGGACTG 57.377 34.615 1.21 0.00 30.49 3.51
5668 6570 6.882610 TTCATAATGTGTTTTGACTCAGCT 57.117 33.333 0.00 0.00 0.00 4.24



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.