Multiple sequence alignment - TraesCS2B01G345400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G345400 chr2B 100.000 3937 0 0 1 3937 492152705 492148769 0.000000e+00 7271.0
1 TraesCS2B01G345400 chr2B 100.000 281 0 0 4226 4506 492148480 492148200 1.860000e-143 520.0
2 TraesCS2B01G345400 chr2D 92.269 3557 169 53 418 3895 419787501 419783972 0.000000e+00 4948.0
3 TraesCS2B01G345400 chr2D 90.236 297 5 5 4226 4506 419783834 419783546 2.560000e-97 366.0
4 TraesCS2B01G345400 chr2D 95.833 48 2 0 3881 3928 419783957 419783910 1.340000e-10 78.7
5 TraesCS2B01G345400 chr2A 93.279 1830 102 15 1954 3766 570190640 570192465 0.000000e+00 2678.0
6 TraesCS2B01G345400 chr2A 89.317 1507 96 22 484 1958 570189008 570190481 0.000000e+00 1831.0
7 TraesCS2B01G345400 chr2A 95.035 282 5 2 4226 4506 570192738 570193011 6.920000e-118 435.0
8 TraesCS2B01G345400 chr3B 82.636 1722 210 50 2088 3771 21404149 21405819 0.000000e+00 1441.0
9 TraesCS2B01G345400 chr3B 95.526 380 14 2 1 377 614192397 614192018 4.990000e-169 604.0
10 TraesCS2B01G345400 chr3B 94.444 378 19 2 1 377 99120518 99120894 8.400000e-162 580.0
11 TraesCS2B01G345400 chr3B 94.652 374 19 1 1 373 765305879 765306252 3.020000e-161 579.0
12 TraesCS2B01G345400 chr3B 75.676 407 60 16 1004 1397 21402835 21403215 2.790000e-37 167.0
13 TraesCS2B01G345400 chr3D 82.066 1617 183 53 2088 3652 14448095 14449656 0.000000e+00 1280.0
14 TraesCS2B01G345400 chr3D 76.190 504 73 24 905 1397 14446718 14447185 5.870000e-54 222.0
15 TraesCS2B01G345400 chr3A 83.600 1439 159 36 2088 3493 22230236 22228842 0.000000e+00 1279.0
16 TraesCS2B01G345400 chr3A 74.872 390 65 18 910 1293 22231616 22231254 3.630000e-31 147.0
17 TraesCS2B01G345400 chr3A 87.097 93 8 1 1312 1400 22231265 22231173 7.970000e-18 102.0
18 TraesCS2B01G345400 chr6B 95.153 392 16 1 1 389 492022119 492022510 2.300000e-172 616.0
19 TraesCS2B01G345400 chr6B 94.960 377 19 0 1 377 462907061 462907437 3.880000e-165 592.0
20 TraesCS2B01G345400 chr1A 95.503 378 16 1 1 377 518965742 518965365 1.790000e-168 603.0
21 TraesCS2B01G345400 chr1A 94.459 379 19 2 1 377 396054300 396054678 2.340000e-162 582.0
22 TraesCS2B01G345400 chrUn 94.402 393 18 2 1 390 30968808 30968417 6.450000e-168 601.0
23 TraesCS2B01G345400 chr6A 94.057 387 20 1 1 384 578608522 578608136 6.500000e-163 584.0
24 TraesCS2B01G345400 chr7A 82.278 79 11 2 4431 4506 611969561 611969639 1.050000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G345400 chr2B 492148200 492152705 4505 True 3895.500000 7271 100.000000 1 4506 2 chr2B.!!$R1 4505
1 TraesCS2B01G345400 chr2D 419783546 419787501 3955 True 1797.566667 4948 92.779333 418 4506 3 chr2D.!!$R1 4088
2 TraesCS2B01G345400 chr2A 570189008 570193011 4003 False 1648.000000 2678 92.543667 484 4506 3 chr2A.!!$F1 4022
3 TraesCS2B01G345400 chr3B 21402835 21405819 2984 False 804.000000 1441 79.156000 1004 3771 2 chr3B.!!$F3 2767
4 TraesCS2B01G345400 chr3D 14446718 14449656 2938 False 751.000000 1280 79.128000 905 3652 2 chr3D.!!$F1 2747
5 TraesCS2B01G345400 chr3A 22228842 22231616 2774 True 509.333333 1279 81.856333 910 3493 3 chr3A.!!$R1 2583

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
204 205 0.033090 GTTCCCGAACGGTTCTCTGT 59.967 55.0 17.94 0.0 34.21 3.41 F
384 385 0.035152 GTGCATGTCACCTGATCCCA 60.035 55.0 8.54 0.0 39.79 4.37 F
402 403 0.036010 CAGTCCTTCCGGTCATGCTT 60.036 55.0 0.00 0.0 0.00 3.91 F
898 936 0.105142 CCCGAAATCCCTCCCCTCTA 60.105 60.0 0.00 0.0 0.00 2.43 F
1131 1199 1.097547 TCCGTACGAATCCCTCCGTC 61.098 60.0 18.76 0.0 39.86 4.79 F
1577 1687 1.140407 CGGAAGTCGCATTCTCGGTC 61.140 60.0 0.44 0.0 0.00 4.79 F
3132 4059 0.249868 TCCTTGTTCAGTCTGGCACG 60.250 55.0 0.00 0.0 0.00 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1131 1199 1.749033 GCGGGATAGAACCAGGGAG 59.251 63.158 0.0 0.0 0.00 4.30 R
1545 1655 1.807573 CTTCCGCTCGAACCAGCTC 60.808 63.158 0.0 0.0 37.25 4.09 R
1547 1657 2.048127 ACTTCCGCTCGAACCAGC 60.048 61.111 0.0 0.0 35.90 4.85 R
2712 3610 1.142667 TGCATCACACCAGAAGGAACA 59.857 47.619 0.0 0.0 38.69 3.18 R
2916 3827 7.396540 AAAGCACTCCTGGTTATCATAAAAG 57.603 36.000 0.0 0.0 37.11 2.27 R
3210 4142 2.026449 AGCTTTCCTCCTCAATGACCAG 60.026 50.000 0.0 0.0 0.00 4.00 R
4304 5387 0.907704 TATGGTGCGTTGGACTCCCT 60.908 55.000 0.0 0.0 0.00 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.910956 TCAGGTGACATGCGCTAC 57.089 55.556 9.73 0.00 0.00 3.58
18 19 1.153842 TCAGGTGACATGCGCTACG 60.154 57.895 9.73 0.00 0.00 3.51
19 20 1.153842 CAGGTGACATGCGCTACGA 60.154 57.895 9.73 0.00 0.00 3.43
20 21 0.528466 CAGGTGACATGCGCTACGAT 60.528 55.000 9.73 0.00 0.00 3.73
21 22 0.528466 AGGTGACATGCGCTACGATG 60.528 55.000 9.73 6.41 0.00 3.84
22 23 0.527600 GGTGACATGCGCTACGATGA 60.528 55.000 9.73 0.00 0.00 2.92
23 24 0.572590 GTGACATGCGCTACGATGAC 59.427 55.000 9.73 4.93 0.00 3.06
24 25 0.172352 TGACATGCGCTACGATGACA 59.828 50.000 9.73 7.74 0.00 3.58
25 26 1.202405 TGACATGCGCTACGATGACAT 60.202 47.619 9.73 0.00 0.00 3.06
26 27 1.190984 GACATGCGCTACGATGACATG 59.809 52.381 9.73 2.68 42.92 3.21
27 28 0.110956 CATGCGCTACGATGACATGC 60.111 55.000 9.73 0.00 32.54 4.06
28 29 0.530431 ATGCGCTACGATGACATGCA 60.530 50.000 9.73 0.00 35.10 3.96
29 30 1.273887 GCGCTACGATGACATGCAC 59.726 57.895 0.00 0.00 0.00 4.57
30 31 1.555066 CGCTACGATGACATGCACG 59.445 57.895 0.00 0.00 0.00 5.34
31 32 0.865639 CGCTACGATGACATGCACGA 60.866 55.000 0.00 0.00 0.00 4.35
32 33 1.491670 GCTACGATGACATGCACGAT 58.508 50.000 0.00 0.00 0.00 3.73
33 34 1.190984 GCTACGATGACATGCACGATG 59.809 52.381 0.00 0.00 38.15 3.84
34 35 2.731217 CTACGATGACATGCACGATGA 58.269 47.619 0.00 0.00 35.80 2.92
35 36 1.280982 ACGATGACATGCACGATGAC 58.719 50.000 0.00 0.00 35.80 3.06
36 37 1.280066 CGATGACATGCACGATGACA 58.720 50.000 0.00 0.00 40.35 3.58
37 38 1.862827 CGATGACATGCACGATGACAT 59.137 47.619 3.88 3.88 46.16 3.06
38 39 2.348218 CGATGACATGCACGATGACATG 60.348 50.000 8.18 10.81 44.34 3.21
39 40 0.728542 TGACATGCACGATGACATGC 59.271 50.000 0.00 0.00 46.08 4.06
40 41 0.315625 GACATGCACGATGACATGCG 60.316 55.000 0.00 0.00 46.08 4.73
41 42 1.010462 CATGCACGATGACATGCGG 60.010 57.895 0.00 0.00 45.13 5.69
42 43 2.827051 ATGCACGATGACATGCGGC 61.827 57.895 0.00 0.00 45.13 6.53
43 44 4.241999 GCACGATGACATGCGGCC 62.242 66.667 0.00 0.00 30.97 6.13
44 45 3.576356 CACGATGACATGCGGCCC 61.576 66.667 0.00 0.00 0.00 5.80
45 46 4.094646 ACGATGACATGCGGCCCA 62.095 61.111 0.00 0.00 0.00 5.36
46 47 2.823593 CGATGACATGCGGCCCAA 60.824 61.111 0.00 0.00 0.00 4.12
47 48 2.405805 CGATGACATGCGGCCCAAA 61.406 57.895 0.00 0.00 0.00 3.28
48 49 1.727511 CGATGACATGCGGCCCAAAT 61.728 55.000 0.00 0.00 0.00 2.32
49 50 0.461135 GATGACATGCGGCCCAAATT 59.539 50.000 0.00 0.00 0.00 1.82
50 51 0.461135 ATGACATGCGGCCCAAATTC 59.539 50.000 0.00 0.00 0.00 2.17
51 52 0.897401 TGACATGCGGCCCAAATTCA 60.897 50.000 0.00 0.00 0.00 2.57
52 53 0.246086 GACATGCGGCCCAAATTCAA 59.754 50.000 0.00 0.00 0.00 2.69
53 54 0.683973 ACATGCGGCCCAAATTCAAA 59.316 45.000 0.00 0.00 0.00 2.69
54 55 1.278699 ACATGCGGCCCAAATTCAAAT 59.721 42.857 0.00 0.00 0.00 2.32
55 56 2.290197 ACATGCGGCCCAAATTCAAATT 60.290 40.909 0.00 0.00 0.00 1.82
56 57 2.557920 TGCGGCCCAAATTCAAATTT 57.442 40.000 0.00 0.00 39.07 1.82
57 58 3.685139 TGCGGCCCAAATTCAAATTTA 57.315 38.095 0.00 0.00 36.52 1.40
58 59 4.008074 TGCGGCCCAAATTCAAATTTAA 57.992 36.364 0.00 0.00 36.52 1.52
59 60 4.389374 TGCGGCCCAAATTCAAATTTAAA 58.611 34.783 0.00 0.00 36.52 1.52
60 61 4.214332 TGCGGCCCAAATTCAAATTTAAAC 59.786 37.500 0.00 0.00 36.52 2.01
61 62 4.214332 GCGGCCCAAATTCAAATTTAAACA 59.786 37.500 0.00 0.00 36.52 2.83
62 63 5.106357 GCGGCCCAAATTCAAATTTAAACAT 60.106 36.000 0.00 0.00 36.52 2.71
63 64 6.569418 GCGGCCCAAATTCAAATTTAAACATT 60.569 34.615 0.00 0.00 36.52 2.71
64 65 6.800892 CGGCCCAAATTCAAATTTAAACATTG 59.199 34.615 0.00 8.56 36.52 2.82
65 66 6.585702 GGCCCAAATTCAAATTTAAACATTGC 59.414 34.615 9.60 0.00 36.52 3.56
66 67 6.305160 GCCCAAATTCAAATTTAAACATTGCG 59.695 34.615 9.60 0.00 36.52 4.85
67 68 7.579726 CCCAAATTCAAATTTAAACATTGCGA 58.420 30.769 9.60 3.66 36.52 5.10
68 69 8.072567 CCCAAATTCAAATTTAAACATTGCGAA 58.927 29.630 9.60 2.95 36.52 4.70
69 70 9.443283 CCAAATTCAAATTTAAACATTGCGAAA 57.557 25.926 9.60 0.00 36.52 3.46
100 101 2.074547 AAAGCATGCATGTTCACAGC 57.925 45.000 26.79 11.46 0.00 4.40
101 102 0.963225 AAGCATGCATGTTCACAGCA 59.037 45.000 26.79 6.55 43.14 4.41
102 103 0.242825 AGCATGCATGTTCACAGCAC 59.757 50.000 26.79 7.72 41.60 4.40
103 104 0.038983 GCATGCATGTTCACAGCACA 60.039 50.000 26.79 0.00 41.60 4.57
104 105 1.403647 GCATGCATGTTCACAGCACAT 60.404 47.619 26.79 0.00 41.60 3.21
105 106 2.159352 GCATGCATGTTCACAGCACATA 60.159 45.455 26.79 0.00 41.60 2.29
106 107 3.431856 CATGCATGTTCACAGCACATAC 58.568 45.455 18.91 0.00 41.60 2.39
107 108 2.781923 TGCATGTTCACAGCACATACT 58.218 42.857 0.00 0.00 32.88 2.12
108 109 3.936564 TGCATGTTCACAGCACATACTA 58.063 40.909 0.00 0.00 32.88 1.82
109 110 4.322567 TGCATGTTCACAGCACATACTAA 58.677 39.130 0.00 0.00 32.88 2.24
110 111 4.392754 TGCATGTTCACAGCACATACTAAG 59.607 41.667 0.00 0.00 32.88 2.18
111 112 4.631377 GCATGTTCACAGCACATACTAAGA 59.369 41.667 0.00 0.00 32.88 2.10
112 113 5.295292 GCATGTTCACAGCACATACTAAGAT 59.705 40.000 0.00 0.00 32.88 2.40
113 114 6.479990 GCATGTTCACAGCACATACTAAGATA 59.520 38.462 0.00 0.00 32.88 1.98
114 115 7.011389 GCATGTTCACAGCACATACTAAGATAA 59.989 37.037 0.00 0.00 32.88 1.75
115 116 7.827819 TGTTCACAGCACATACTAAGATAAC 57.172 36.000 0.00 0.00 0.00 1.89
116 117 6.816640 TGTTCACAGCACATACTAAGATAACC 59.183 38.462 0.00 0.00 0.00 2.85
117 118 5.914033 TCACAGCACATACTAAGATAACCC 58.086 41.667 0.00 0.00 0.00 4.11
118 119 5.057149 CACAGCACATACTAAGATAACCCC 58.943 45.833 0.00 0.00 0.00 4.95
119 120 4.969359 ACAGCACATACTAAGATAACCCCT 59.031 41.667 0.00 0.00 0.00 4.79
120 121 6.041637 CACAGCACATACTAAGATAACCCCTA 59.958 42.308 0.00 0.00 0.00 3.53
121 122 6.614087 ACAGCACATACTAAGATAACCCCTAA 59.386 38.462 0.00 0.00 0.00 2.69
122 123 7.126726 ACAGCACATACTAAGATAACCCCTAAA 59.873 37.037 0.00 0.00 0.00 1.85
123 124 7.990886 CAGCACATACTAAGATAACCCCTAAAA 59.009 37.037 0.00 0.00 0.00 1.52
124 125 8.554011 AGCACATACTAAGATAACCCCTAAAAA 58.446 33.333 0.00 0.00 0.00 1.94
125 126 9.350951 GCACATACTAAGATAACCCCTAAAAAT 57.649 33.333 0.00 0.00 0.00 1.82
134 135 9.768215 AAGATAACCCCTAAAAATTTCAGATCA 57.232 29.630 0.00 0.00 0.00 2.92
135 136 9.768215 AGATAACCCCTAAAAATTTCAGATCAA 57.232 29.630 0.00 0.00 0.00 2.57
140 141 9.725019 ACCCCTAAAAATTTCAGATCAAAATTC 57.275 29.630 15.22 0.00 35.75 2.17
141 142 8.872845 CCCCTAAAAATTTCAGATCAAAATTCG 58.127 33.333 15.22 7.79 35.75 3.34
142 143 9.638239 CCCTAAAAATTTCAGATCAAAATTCGA 57.362 29.630 15.22 0.00 35.75 3.71
152 153 9.773328 TTCAGATCAAAATTCGAAACATACATC 57.227 29.630 0.00 0.31 0.00 3.06
153 154 8.945057 TCAGATCAAAATTCGAAACATACATCA 58.055 29.630 0.00 0.00 0.00 3.07
154 155 9.558648 CAGATCAAAATTCGAAACATACATCAA 57.441 29.630 0.00 0.00 0.00 2.57
155 156 9.778993 AGATCAAAATTCGAAACATACATCAAG 57.221 29.630 0.00 0.00 0.00 3.02
156 157 9.773328 GATCAAAATTCGAAACATACATCAAGA 57.227 29.630 0.00 0.00 0.00 3.02
158 159 9.958234 TCAAAATTCGAAACATACATCAAGAAA 57.042 25.926 0.00 0.00 0.00 2.52
159 160 9.993881 CAAAATTCGAAACATACATCAAGAAAC 57.006 29.630 0.00 0.00 0.00 2.78
160 161 9.743057 AAAATTCGAAACATACATCAAGAAACA 57.257 25.926 0.00 0.00 0.00 2.83
161 162 8.955061 AATTCGAAACATACATCAAGAAACAG 57.045 30.769 0.00 0.00 0.00 3.16
162 163 7.722795 TTCGAAACATACATCAAGAAACAGA 57.277 32.000 0.00 0.00 0.00 3.41
163 164 7.722795 TCGAAACATACATCAAGAAACAGAA 57.277 32.000 0.00 0.00 0.00 3.02
164 165 8.148807 TCGAAACATACATCAAGAAACAGAAA 57.851 30.769 0.00 0.00 0.00 2.52
165 166 8.616942 TCGAAACATACATCAAGAAACAGAAAA 58.383 29.630 0.00 0.00 0.00 2.29
166 167 8.895845 CGAAACATACATCAAGAAACAGAAAAG 58.104 33.333 0.00 0.00 0.00 2.27
167 168 9.950680 GAAACATACATCAAGAAACAGAAAAGA 57.049 29.630 0.00 0.00 0.00 2.52
168 169 9.956720 AAACATACATCAAGAAACAGAAAAGAG 57.043 29.630 0.00 0.00 0.00 2.85
169 170 8.908786 ACATACATCAAGAAACAGAAAAGAGA 57.091 30.769 0.00 0.00 0.00 3.10
170 171 9.342308 ACATACATCAAGAAACAGAAAAGAGAA 57.658 29.630 0.00 0.00 0.00 2.87
174 175 9.129532 ACATCAAGAAACAGAAAAGAGAAATCT 57.870 29.630 0.00 0.00 0.00 2.40
175 176 9.395707 CATCAAGAAACAGAAAAGAGAAATCTG 57.604 33.333 0.00 0.00 44.77 2.90
186 187 9.956640 AGAAAAGAGAAATCTGTCATGAATAGT 57.043 29.630 0.00 0.00 0.00 2.12
189 190 8.729805 AAGAGAAATCTGTCATGAATAGTTCC 57.270 34.615 0.00 0.00 0.00 3.62
190 191 7.278875 AGAGAAATCTGTCATGAATAGTTCCC 58.721 38.462 0.00 0.00 0.00 3.97
191 192 6.051717 AGAAATCTGTCATGAATAGTTCCCG 58.948 40.000 0.00 0.00 0.00 5.14
192 193 5.614324 AATCTGTCATGAATAGTTCCCGA 57.386 39.130 0.00 0.00 0.00 5.14
193 194 5.614324 ATCTGTCATGAATAGTTCCCGAA 57.386 39.130 0.00 0.00 0.00 4.30
194 195 4.755411 TCTGTCATGAATAGTTCCCGAAC 58.245 43.478 0.00 0.00 41.45 3.95
195 196 3.517602 TGTCATGAATAGTTCCCGAACG 58.482 45.455 0.00 0.00 45.50 3.95
196 197 2.864343 GTCATGAATAGTTCCCGAACGG 59.136 50.000 6.25 6.25 45.50 4.44
197 198 2.498481 TCATGAATAGTTCCCGAACGGT 59.502 45.455 12.23 0.00 45.50 4.83
198 199 3.055675 TCATGAATAGTTCCCGAACGGTT 60.056 43.478 12.23 0.00 45.50 4.44
199 200 2.963432 TGAATAGTTCCCGAACGGTTC 58.037 47.619 10.83 10.83 45.50 3.62
200 201 2.564062 TGAATAGTTCCCGAACGGTTCT 59.436 45.455 17.94 9.20 45.50 3.01
201 202 2.955477 ATAGTTCCCGAACGGTTCTC 57.045 50.000 17.94 4.58 45.50 2.87
202 203 1.915141 TAGTTCCCGAACGGTTCTCT 58.085 50.000 17.94 10.53 45.50 3.10
203 204 0.317479 AGTTCCCGAACGGTTCTCTG 59.683 55.000 17.94 6.99 45.50 3.35
204 205 0.033090 GTTCCCGAACGGTTCTCTGT 59.967 55.000 17.94 0.00 34.21 3.41
205 206 1.270550 GTTCCCGAACGGTTCTCTGTA 59.729 52.381 17.94 0.00 32.25 2.74
206 207 1.171308 TCCCGAACGGTTCTCTGTAG 58.829 55.000 17.94 2.25 32.25 2.74
207 208 1.171308 CCCGAACGGTTCTCTGTAGA 58.829 55.000 17.94 0.00 32.25 2.59
208 209 1.135460 CCCGAACGGTTCTCTGTAGAC 60.135 57.143 17.94 0.00 32.25 2.59
209 210 1.811359 CCGAACGGTTCTCTGTAGACT 59.189 52.381 17.94 0.00 32.25 3.24
210 211 3.005554 CCGAACGGTTCTCTGTAGACTA 58.994 50.000 17.94 0.00 32.25 2.59
211 212 3.626670 CCGAACGGTTCTCTGTAGACTAT 59.373 47.826 17.94 0.00 32.25 2.12
212 213 4.096081 CCGAACGGTTCTCTGTAGACTATT 59.904 45.833 17.94 0.00 32.25 1.73
213 214 5.264712 CGAACGGTTCTCTGTAGACTATTC 58.735 45.833 17.94 0.00 32.25 1.75
214 215 5.163784 CGAACGGTTCTCTGTAGACTATTCA 60.164 44.000 17.94 0.00 32.25 2.57
215 216 5.564048 ACGGTTCTCTGTAGACTATTCAC 57.436 43.478 0.00 0.00 0.00 3.18
216 217 5.008331 ACGGTTCTCTGTAGACTATTCACA 58.992 41.667 0.00 0.00 0.00 3.58
217 218 5.652891 ACGGTTCTCTGTAGACTATTCACAT 59.347 40.000 0.00 0.00 0.00 3.21
218 219 6.183360 ACGGTTCTCTGTAGACTATTCACATC 60.183 42.308 0.00 0.00 0.00 3.06
219 220 6.038825 CGGTTCTCTGTAGACTATTCACATCT 59.961 42.308 0.00 0.00 0.00 2.90
220 221 7.199766 GGTTCTCTGTAGACTATTCACATCTG 58.800 42.308 0.00 0.00 0.00 2.90
221 222 7.067615 GGTTCTCTGTAGACTATTCACATCTGA 59.932 40.741 0.00 0.00 0.00 3.27
222 223 7.800155 TCTCTGTAGACTATTCACATCTGAG 57.200 40.000 0.00 0.00 0.00 3.35
223 224 7.342581 TCTCTGTAGACTATTCACATCTGAGT 58.657 38.462 0.00 0.00 0.00 3.41
224 225 7.831690 TCTCTGTAGACTATTCACATCTGAGTT 59.168 37.037 0.00 0.00 0.00 3.01
225 226 8.354711 TCTGTAGACTATTCACATCTGAGTTT 57.645 34.615 0.00 0.00 0.00 2.66
226 227 8.807118 TCTGTAGACTATTCACATCTGAGTTTT 58.193 33.333 0.00 0.00 0.00 2.43
227 228 9.429359 CTGTAGACTATTCACATCTGAGTTTTT 57.571 33.333 0.00 0.00 0.00 1.94
228 229 9.424319 TGTAGACTATTCACATCTGAGTTTTTC 57.576 33.333 0.00 0.00 0.00 2.29
229 230 9.646427 GTAGACTATTCACATCTGAGTTTTTCT 57.354 33.333 0.00 0.00 0.00 2.52
231 232 9.566432 AGACTATTCACATCTGAGTTTTTCTTT 57.434 29.630 0.00 0.00 0.00 2.52
256 257 9.574458 TTTTTGTTTCTTGATGTATGTTTCGAA 57.426 25.926 0.00 0.00 0.00 3.71
257 258 9.743057 TTTTGTTTCTTGATGTATGTTTCGAAT 57.257 25.926 0.00 0.00 0.00 3.34
258 259 9.743057 TTTGTTTCTTGATGTATGTTTCGAATT 57.257 25.926 0.00 0.00 0.00 2.17
259 260 9.743057 TTGTTTCTTGATGTATGTTTCGAATTT 57.257 25.926 0.00 0.00 0.00 1.82
260 261 9.743057 TGTTTCTTGATGTATGTTTCGAATTTT 57.257 25.926 0.00 0.00 0.00 1.82
261 262 9.993881 GTTTCTTGATGTATGTTTCGAATTTTG 57.006 29.630 0.00 0.00 0.00 2.44
262 263 9.958234 TTTCTTGATGTATGTTTCGAATTTTGA 57.042 25.926 0.00 0.00 0.00 2.69
264 265 9.773328 TCTTGATGTATGTTTCGAATTTTGATC 57.227 29.630 0.00 0.00 0.00 2.92
265 266 9.778993 CTTGATGTATGTTTCGAATTTTGATCT 57.221 29.630 0.00 0.00 0.00 2.75
266 267 9.558648 TTGATGTATGTTTCGAATTTTGATCTG 57.441 29.630 0.00 0.00 0.00 2.90
267 268 8.945057 TGATGTATGTTTCGAATTTTGATCTGA 58.055 29.630 0.00 0.00 0.00 3.27
268 269 9.773328 GATGTATGTTTCGAATTTTGATCTGAA 57.227 29.630 0.00 0.00 0.00 3.02
278 279 9.638239 TCGAATTTTGATCTGAAATTTTTAGGG 57.362 29.630 16.28 7.24 36.96 3.53
279 280 8.872845 CGAATTTTGATCTGAAATTTTTAGGGG 58.127 33.333 16.28 3.83 36.96 4.79
280 281 9.725019 GAATTTTGATCTGAAATTTTTAGGGGT 57.275 29.630 16.28 0.00 36.96 4.95
285 286 9.768215 TTGATCTGAAATTTTTAGGGGTTATCT 57.232 29.630 0.00 0.00 0.00 1.98
286 287 9.768215 TGATCTGAAATTTTTAGGGGTTATCTT 57.232 29.630 0.00 0.00 0.00 2.40
296 297 9.930158 TTTTTAGGGGTTATCTTAATATGTGCT 57.070 29.630 0.00 0.00 0.00 4.40
297 298 8.918202 TTTAGGGGTTATCTTAATATGTGCTG 57.082 34.615 0.00 0.00 0.00 4.41
298 299 6.515512 AGGGGTTATCTTAATATGTGCTGT 57.484 37.500 0.00 0.00 0.00 4.40
299 300 6.299141 AGGGGTTATCTTAATATGTGCTGTG 58.701 40.000 0.00 0.00 0.00 3.66
300 301 6.101150 AGGGGTTATCTTAATATGTGCTGTGA 59.899 38.462 0.00 0.00 0.00 3.58
301 302 6.770785 GGGGTTATCTTAATATGTGCTGTGAA 59.229 38.462 0.00 0.00 0.00 3.18
302 303 7.255139 GGGGTTATCTTAATATGTGCTGTGAAC 60.255 40.741 0.00 0.00 0.00 3.18
303 304 7.282224 GGGTTATCTTAATATGTGCTGTGAACA 59.718 37.037 0.00 0.00 0.00 3.18
304 305 8.840321 GGTTATCTTAATATGTGCTGTGAACAT 58.160 33.333 0.00 0.00 41.14 2.71
305 306 9.655769 GTTATCTTAATATGTGCTGTGAACATG 57.344 33.333 1.67 0.00 38.67 3.21
306 307 6.122850 TCTTAATATGTGCTGTGAACATGC 57.877 37.500 1.67 0.00 38.67 4.06
307 308 5.647225 TCTTAATATGTGCTGTGAACATGCA 59.353 36.000 1.67 0.00 38.67 3.96
308 309 4.994907 AATATGTGCTGTGAACATGCAT 57.005 36.364 0.00 0.00 38.67 3.96
309 310 2.647529 ATGTGCTGTGAACATGCATG 57.352 45.000 25.09 25.09 36.89 4.06
310 311 1.606903 TGTGCTGTGAACATGCATGA 58.393 45.000 32.75 8.19 39.00 3.07
311 312 2.164338 TGTGCTGTGAACATGCATGAT 58.836 42.857 32.75 22.02 39.00 2.45
312 313 2.559231 TGTGCTGTGAACATGCATGATT 59.441 40.909 32.75 21.39 39.00 2.57
313 314 3.006003 TGTGCTGTGAACATGCATGATTT 59.994 39.130 32.75 17.59 39.00 2.17
314 315 3.991773 GTGCTGTGAACATGCATGATTTT 59.008 39.130 32.75 16.83 39.00 1.82
315 316 4.449743 GTGCTGTGAACATGCATGATTTTT 59.550 37.500 32.75 16.45 39.00 1.94
353 354 9.468532 TTGCAATGTTTAAATTTAAATTTGGGC 57.531 25.926 28.45 24.04 38.90 5.36
354 355 8.084684 TGCAATGTTTAAATTTAAATTTGGGCC 58.915 29.630 28.45 20.34 38.90 5.80
355 356 7.272299 GCAATGTTTAAATTTAAATTTGGGCCG 59.728 33.333 28.45 15.30 38.90 6.13
356 357 6.242508 TGTTTAAATTTAAATTTGGGCCGC 57.757 33.333 28.45 15.89 38.90 6.53
357 358 5.763204 TGTTTAAATTTAAATTTGGGCCGCA 59.237 32.000 28.45 17.60 38.90 5.69
358 359 6.431234 TGTTTAAATTTAAATTTGGGCCGCAT 59.569 30.769 28.45 8.37 38.90 4.73
359 360 4.961435 AAATTTAAATTTGGGCCGCATG 57.039 36.364 22.30 0.00 37.24 4.06
360 361 3.625649 ATTTAAATTTGGGCCGCATGT 57.374 38.095 0.00 0.00 0.00 3.21
361 362 2.663826 TTAAATTTGGGCCGCATGTC 57.336 45.000 0.00 0.00 0.00 3.06
362 363 1.550327 TAAATTTGGGCCGCATGTCA 58.450 45.000 0.00 0.00 0.00 3.58
363 364 0.037419 AAATTTGGGCCGCATGTCAC 60.037 50.000 0.00 0.00 0.00 3.67
364 365 1.887344 AATTTGGGCCGCATGTCACC 61.887 55.000 0.00 0.00 0.00 4.02
374 375 2.542432 CATGTCACCGTGCATGTCA 58.458 52.632 19.50 0.00 38.06 3.58
375 376 0.166597 CATGTCACCGTGCATGTCAC 59.833 55.000 19.50 9.41 42.23 3.67
376 377 0.955428 ATGTCACCGTGCATGTCACC 60.955 55.000 4.96 2.22 42.69 4.02
377 378 1.301716 GTCACCGTGCATGTCACCT 60.302 57.895 4.96 0.00 42.69 4.00
378 379 1.301637 TCACCGTGCATGTCACCTG 60.302 57.895 4.96 9.22 42.69 4.00
379 380 1.301637 CACCGTGCATGTCACCTGA 60.302 57.895 4.96 0.00 42.69 3.86
380 381 0.674581 CACCGTGCATGTCACCTGAT 60.675 55.000 4.96 0.00 42.69 2.90
381 382 0.391661 ACCGTGCATGTCACCTGATC 60.392 55.000 4.96 0.00 42.69 2.92
382 383 1.091771 CCGTGCATGTCACCTGATCC 61.092 60.000 4.96 0.00 42.69 3.36
383 384 1.091771 CGTGCATGTCACCTGATCCC 61.092 60.000 12.62 0.00 42.69 3.85
384 385 0.035152 GTGCATGTCACCTGATCCCA 60.035 55.000 8.54 0.00 39.79 4.37
385 386 0.253894 TGCATGTCACCTGATCCCAG 59.746 55.000 0.00 0.00 40.09 4.45
386 387 0.254178 GCATGTCACCTGATCCCAGT 59.746 55.000 0.00 0.00 38.74 4.00
387 388 1.745141 GCATGTCACCTGATCCCAGTC 60.745 57.143 0.00 0.00 38.74 3.51
388 389 1.134280 CATGTCACCTGATCCCAGTCC 60.134 57.143 0.00 0.00 38.74 3.85
389 390 0.117140 TGTCACCTGATCCCAGTCCT 59.883 55.000 0.00 0.00 38.74 3.85
390 391 1.280457 GTCACCTGATCCCAGTCCTT 58.720 55.000 0.00 0.00 38.74 3.36
391 392 1.208293 GTCACCTGATCCCAGTCCTTC 59.792 57.143 0.00 0.00 38.74 3.46
392 393 0.543749 CACCTGATCCCAGTCCTTCC 59.456 60.000 0.00 0.00 38.74 3.46
393 394 0.978146 ACCTGATCCCAGTCCTTCCG 60.978 60.000 0.00 0.00 38.74 4.30
394 395 1.690219 CCTGATCCCAGTCCTTCCGG 61.690 65.000 0.00 0.00 38.74 5.14
395 396 0.978146 CTGATCCCAGTCCTTCCGGT 60.978 60.000 0.00 0.00 35.70 5.28
396 397 0.976073 TGATCCCAGTCCTTCCGGTC 60.976 60.000 0.00 0.00 0.00 4.79
397 398 0.976073 GATCCCAGTCCTTCCGGTCA 60.976 60.000 0.00 0.00 0.00 4.02
398 399 0.326618 ATCCCAGTCCTTCCGGTCAT 60.327 55.000 0.00 0.00 0.00 3.06
399 400 1.221840 CCCAGTCCTTCCGGTCATG 59.778 63.158 0.00 0.00 0.00 3.07
400 401 1.450312 CCAGTCCTTCCGGTCATGC 60.450 63.158 0.00 0.00 0.00 4.06
401 402 1.599047 CAGTCCTTCCGGTCATGCT 59.401 57.895 0.00 0.00 0.00 3.79
402 403 0.036010 CAGTCCTTCCGGTCATGCTT 60.036 55.000 0.00 0.00 0.00 3.91
403 404 0.693049 AGTCCTTCCGGTCATGCTTT 59.307 50.000 0.00 0.00 0.00 3.51
404 405 1.087501 GTCCTTCCGGTCATGCTTTC 58.912 55.000 0.00 0.00 0.00 2.62
405 406 0.391130 TCCTTCCGGTCATGCTTTCG 60.391 55.000 0.00 0.00 0.00 3.46
406 407 1.425428 CTTCCGGTCATGCTTTCGC 59.575 57.895 0.00 0.00 0.00 4.70
407 408 1.982073 CTTCCGGTCATGCTTTCGCC 61.982 60.000 0.00 0.00 34.43 5.54
408 409 2.436646 CCGGTCATGCTTTCGCCT 60.437 61.111 0.00 0.00 34.43 5.52
409 410 1.153449 CCGGTCATGCTTTCGCCTA 60.153 57.895 0.00 0.00 34.43 3.93
410 411 1.154205 CCGGTCATGCTTTCGCCTAG 61.154 60.000 0.00 0.00 34.43 3.02
411 412 1.766143 CGGTCATGCTTTCGCCTAGC 61.766 60.000 0.00 0.00 39.10 3.42
416 417 3.070076 TGCTTTCGCCTAGCATCTG 57.930 52.632 0.00 0.00 43.30 2.90
425 426 1.780806 CCTAGCATCTGATGTGAGCG 58.219 55.000 18.19 7.09 0.00 5.03
428 429 2.879070 GCATCTGATGTGAGCGCCG 61.879 63.158 18.19 0.00 0.00 6.46
437 438 1.066587 GTGAGCGCCGCTAGAGATT 59.933 57.895 13.54 0.00 39.88 2.40
438 439 0.528684 GTGAGCGCCGCTAGAGATTT 60.529 55.000 13.54 0.00 39.88 2.17
448 449 4.512944 GCCGCTAGAGATTTGATGAAATGA 59.487 41.667 0.00 0.00 31.58 2.57
462 463 7.345422 TGATGAAATGAAAGGAACAACTGAA 57.655 32.000 0.00 0.00 0.00 3.02
520 521 3.700577 CAACATTGGACCACATCGC 57.299 52.632 0.00 0.00 0.00 4.58
521 522 0.171007 CAACATTGGACCACATCGCC 59.829 55.000 0.00 0.00 0.00 5.54
522 523 0.251121 AACATTGGACCACATCGCCA 60.251 50.000 0.00 0.00 0.00 5.69
523 524 0.677731 ACATTGGACCACATCGCCAG 60.678 55.000 0.00 0.00 32.47 4.85
524 525 1.750399 ATTGGACCACATCGCCAGC 60.750 57.895 0.00 0.00 32.47 4.85
525 526 3.918253 TTGGACCACATCGCCAGCC 62.918 63.158 0.00 0.00 32.47 4.85
552 553 4.358181 TCCCCACCTACCCACCCC 62.358 72.222 0.00 0.00 0.00 4.95
593 598 3.519930 GACCCGCGTCCTCTCCTC 61.520 72.222 4.92 0.00 32.40 3.71
639 645 0.666577 GCAGCGACGTTTCCTAGTGT 60.667 55.000 0.00 0.00 0.00 3.55
641 647 0.666577 AGCGACGTTTCCTAGTGTGC 60.667 55.000 0.00 0.00 0.00 4.57
643 649 0.662374 CGACGTTTCCTAGTGTGCGT 60.662 55.000 0.00 0.00 35.20 5.24
644 650 0.782384 GACGTTTCCTAGTGTGCGTG 59.218 55.000 0.00 0.00 32.56 5.34
646 652 1.491563 GTTTCCTAGTGTGCGTGCG 59.508 57.895 0.00 0.00 0.00 5.34
649 655 3.777925 CCTAGTGTGCGTGCGTGC 61.778 66.667 0.00 0.00 0.00 5.34
674 683 3.665848 GCGTGCGTTCAGTGCTTTTTATA 60.666 43.478 0.00 0.00 0.00 0.98
675 684 4.081761 CGTGCGTTCAGTGCTTTTTATAG 58.918 43.478 0.00 0.00 0.00 1.31
784 822 1.488261 GACGCACGGCATTAGTAGGC 61.488 60.000 0.00 0.00 0.00 3.93
790 828 1.227853 GGCATTAGTAGGCCCGGTG 60.228 63.158 0.00 0.00 45.41 4.94
791 829 1.892391 GCATTAGTAGGCCCGGTGC 60.892 63.158 0.00 3.09 40.16 5.01
863 901 1.425428 CGCGCTGAAGGAAATGGAC 59.575 57.895 5.56 0.00 0.00 4.02
864 902 1.298157 CGCGCTGAAGGAAATGGACA 61.298 55.000 5.56 0.00 0.00 4.02
894 932 1.076995 CAACCCGAAATCCCTCCCC 60.077 63.158 0.00 0.00 0.00 4.81
897 935 1.384643 CCCGAAATCCCTCCCCTCT 60.385 63.158 0.00 0.00 0.00 3.69
898 936 0.105142 CCCGAAATCCCTCCCCTCTA 60.105 60.000 0.00 0.00 0.00 2.43
1131 1199 1.097547 TCCGTACGAATCCCTCCGTC 61.098 60.000 18.76 0.00 39.86 4.79
1334 1439 3.064324 GCGGTGAAGCAGCCCATT 61.064 61.111 0.00 0.00 37.05 3.16
1432 1541 2.439156 ATTCCGGCTGCTTCTGGC 60.439 61.111 0.00 0.00 42.22 4.85
1498 1607 1.605232 GTGGGTTGATCCGAACGTTTT 59.395 47.619 0.46 0.00 37.00 2.43
1577 1687 1.140407 CGGAAGTCGCATTCTCGGTC 61.140 60.000 0.44 0.00 0.00 4.79
1596 1706 3.432326 GGTCGAGTCAGGCCATATTTTCT 60.432 47.826 5.01 0.00 35.58 2.52
1603 1713 6.904626 AGTCAGGCCATATTTTCTAGTCAAT 58.095 36.000 5.01 0.00 0.00 2.57
1607 1717 8.494433 TCAGGCCATATTTTCTAGTCAATAGTT 58.506 33.333 5.01 0.00 32.85 2.24
1656 1766 2.787473 TTCCACTGCCCTCAAGTATG 57.213 50.000 0.00 0.00 0.00 2.39
1691 1801 5.637006 TGGAATGTTGTTTTAGGGATTCG 57.363 39.130 0.00 0.00 0.00 3.34
2063 2350 9.374838 AGTTCCAAATTAGAATCAAAATGCATC 57.625 29.630 0.00 0.00 0.00 3.91
2187 3084 5.525745 TGAGAAAACACGTCTTGCTGAAATA 59.474 36.000 0.00 0.00 0.00 1.40
2224 3121 4.785376 AGTATATGGGGGAGCTTGGATTAG 59.215 45.833 0.00 0.00 0.00 1.73
2328 3225 5.682943 TTTAGTTTCATTCTGGTCCAACG 57.317 39.130 0.00 0.00 0.00 4.10
2336 3233 1.971695 CTGGTCCAACGAAAGGGGC 60.972 63.158 0.00 0.00 0.00 5.80
2337 3234 2.675423 GGTCCAACGAAAGGGGCC 60.675 66.667 0.00 0.00 0.00 5.80
2377 3274 7.707893 ACTTTGTTGATGATGTTCCTTTCTTTG 59.292 33.333 0.00 0.00 0.00 2.77
2435 3333 3.765968 CCAGGGCCTGGTTAGTTTT 57.234 52.632 39.34 0.00 45.82 2.43
2619 3517 2.360844 GAGAGGCTTTTGGAGGTTAGC 58.639 52.381 0.00 0.00 0.00 3.09
2916 3827 3.047796 CACATGTTGTCTTTGCTTCTGC 58.952 45.455 0.00 0.00 40.20 4.26
2952 3878 1.458827 GAGTGCTTTCGAGCTCTGTTG 59.541 52.381 12.85 0.83 38.54 3.33
2965 3891 5.539048 GAGCTCTGTTGTACCTGTTTAGAA 58.461 41.667 6.43 0.00 0.00 2.10
2992 3918 4.962151 GCACTTACGTTTGTCTTGAGAAAC 59.038 41.667 11.74 11.74 0.00 2.78
3132 4059 0.249868 TCCTTGTTCAGTCTGGCACG 60.250 55.000 0.00 0.00 0.00 5.34
3365 4303 0.652592 CGCTTAGGCACAATTCTCCG 59.347 55.000 0.00 0.00 38.60 4.63
3366 4304 0.378610 GCTTAGGCACAATTCTCCGC 59.621 55.000 0.00 0.00 38.54 5.54
3369 4307 3.531538 CTTAGGCACAATTCTCCGCTAA 58.468 45.455 0.00 0.00 0.00 3.09
3372 4310 1.398390 GGCACAATTCTCCGCTAACTG 59.602 52.381 0.00 0.00 0.00 3.16
3373 4311 2.346803 GCACAATTCTCCGCTAACTGA 58.653 47.619 0.00 0.00 0.00 3.41
3374 4312 2.939103 GCACAATTCTCCGCTAACTGAT 59.061 45.455 0.00 0.00 0.00 2.90
3442 4397 1.001641 CACCCCTGAAGGCAAGAGG 60.002 63.158 0.00 0.00 0.00 3.69
3507 4470 0.935194 ACCTCCGAGGGGAAGTAGAT 59.065 55.000 18.99 0.00 43.27 1.98
3518 4481 5.230759 AGGGGAAGTAGATGATTCAGGAAT 58.769 41.667 0.00 0.00 0.00 3.01
3613 4599 6.287525 CAGATTCAGAGAGGAATAAGGGAAC 58.712 44.000 0.00 0.00 37.61 3.62
3717 4708 2.355837 TGCGTCGTGGTGCTCTTC 60.356 61.111 0.00 0.00 0.00 2.87
3803 4794 2.804572 GCACAGTGCTTCAGACTTCAGA 60.805 50.000 18.92 0.00 40.96 3.27
3862 4916 6.014925 GGTTTATGCCTTTCCCAACTCTTTTA 60.015 38.462 0.00 0.00 0.00 1.52
3863 4917 7.310423 GGTTTATGCCTTTCCCAACTCTTTTAT 60.310 37.037 0.00 0.00 0.00 1.40
3897 4980 8.805137 GAAAATCCTTTCCAGCTCCTAGCTAAC 61.805 44.444 0.24 0.00 41.44 2.34
3930 5013 0.811616 GACAGCTCGGCCCATTACTG 60.812 60.000 0.00 0.33 0.00 2.74
3932 5015 0.811616 CAGCTCGGCCCATTACTGAC 60.812 60.000 0.00 0.00 0.00 3.51
3933 5016 1.220749 GCTCGGCCCATTACTGACA 59.779 57.895 0.00 0.00 0.00 3.58
3936 5019 0.036765 TCGGCCCATTACTGACACAC 60.037 55.000 0.00 0.00 0.00 3.82
4304 5387 3.215151 AGCGATTCAGATAGGACGAGAA 58.785 45.455 0.00 0.00 0.00 2.87
4365 5449 4.200283 CTGTCCGCCTCTCTCGCC 62.200 72.222 0.00 0.00 0.00 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.153842 CGTAGCGCATGTCACCTGA 60.154 57.895 11.47 0.00 0.00 3.86
1 2 0.528466 ATCGTAGCGCATGTCACCTG 60.528 55.000 11.47 0.00 0.00 4.00
2 3 0.528466 CATCGTAGCGCATGTCACCT 60.528 55.000 11.47 0.00 0.00 4.00
3 4 0.527600 TCATCGTAGCGCATGTCACC 60.528 55.000 11.47 0.00 0.00 4.02
4 5 0.572590 GTCATCGTAGCGCATGTCAC 59.427 55.000 11.47 0.00 0.00 3.67
5 6 0.172352 TGTCATCGTAGCGCATGTCA 59.828 50.000 11.47 5.70 0.00 3.58
6 7 1.190984 CATGTCATCGTAGCGCATGTC 59.809 52.381 11.47 2.80 34.10 3.06
7 8 1.211743 CATGTCATCGTAGCGCATGT 58.788 50.000 11.47 0.00 34.10 3.21
8 9 0.110956 GCATGTCATCGTAGCGCATG 60.111 55.000 11.47 4.35 39.68 4.06
9 10 0.530431 TGCATGTCATCGTAGCGCAT 60.530 50.000 11.47 0.00 0.00 4.73
10 11 1.153667 TGCATGTCATCGTAGCGCA 60.154 52.632 11.47 0.00 0.00 6.09
11 12 1.273887 GTGCATGTCATCGTAGCGC 59.726 57.895 0.00 0.00 0.00 5.92
12 13 0.865639 TCGTGCATGTCATCGTAGCG 60.866 55.000 5.68 0.00 0.00 4.26
13 14 1.190984 CATCGTGCATGTCATCGTAGC 59.809 52.381 5.68 0.00 0.00 3.58
14 15 2.469147 GTCATCGTGCATGTCATCGTAG 59.531 50.000 5.68 0.00 33.66 3.51
15 16 2.159310 TGTCATCGTGCATGTCATCGTA 60.159 45.455 5.68 0.00 33.66 3.43
16 17 1.280982 GTCATCGTGCATGTCATCGT 58.719 50.000 5.68 0.00 33.66 3.73
17 18 1.280066 TGTCATCGTGCATGTCATCG 58.720 50.000 5.68 0.00 33.66 3.84
18 19 3.249013 CATGTCATCGTGCATGTCATC 57.751 47.619 5.68 0.00 38.69 2.92
27 28 3.576356 GGGCCGCATGTCATCGTG 61.576 66.667 0.00 0.00 0.00 4.35
28 29 3.620419 TTGGGCCGCATGTCATCGT 62.620 57.895 0.00 0.00 0.00 3.73
29 30 1.727511 ATTTGGGCCGCATGTCATCG 61.728 55.000 0.00 0.00 0.00 3.84
30 31 0.461135 AATTTGGGCCGCATGTCATC 59.539 50.000 0.00 0.00 0.00 2.92
31 32 0.461135 GAATTTGGGCCGCATGTCAT 59.539 50.000 0.00 0.00 0.00 3.06
32 33 0.897401 TGAATTTGGGCCGCATGTCA 60.897 50.000 0.00 0.00 0.00 3.58
33 34 0.246086 TTGAATTTGGGCCGCATGTC 59.754 50.000 0.00 0.00 0.00 3.06
34 35 0.683973 TTTGAATTTGGGCCGCATGT 59.316 45.000 0.00 0.00 0.00 3.21
35 36 2.027003 ATTTGAATTTGGGCCGCATG 57.973 45.000 0.00 0.00 0.00 4.06
36 37 2.785540 AATTTGAATTTGGGCCGCAT 57.214 40.000 0.00 0.00 0.00 4.73
37 38 2.557920 AAATTTGAATTTGGGCCGCA 57.442 40.000 0.00 0.00 37.24 5.69
38 39 4.214332 TGTTTAAATTTGAATTTGGGCCGC 59.786 37.500 11.02 0.00 38.90 6.53
39 40 5.931441 TGTTTAAATTTGAATTTGGGCCG 57.069 34.783 11.02 0.00 38.90 6.13
40 41 6.585702 GCAATGTTTAAATTTGAATTTGGGCC 59.414 34.615 14.55 0.00 38.90 5.80
41 42 6.305160 CGCAATGTTTAAATTTGAATTTGGGC 59.695 34.615 17.02 10.04 38.90 5.36
42 43 7.579726 TCGCAATGTTTAAATTTGAATTTGGG 58.420 30.769 19.99 19.99 38.90 4.12
43 44 9.443283 TTTCGCAATGTTTAAATTTGAATTTGG 57.557 25.926 14.55 10.35 38.90 3.28
79 80 2.803956 GCTGTGAACATGCATGCTTTTT 59.196 40.909 26.53 13.14 0.00 1.94
80 81 2.224090 TGCTGTGAACATGCATGCTTTT 60.224 40.909 26.53 13.52 0.00 2.27
81 82 1.341852 TGCTGTGAACATGCATGCTTT 59.658 42.857 26.53 14.28 0.00 3.51
82 83 0.963225 TGCTGTGAACATGCATGCTT 59.037 45.000 26.53 18.53 0.00 3.91
83 84 0.242825 GTGCTGTGAACATGCATGCT 59.757 50.000 26.53 15.25 39.00 3.79
84 85 0.038983 TGTGCTGTGAACATGCATGC 60.039 50.000 26.53 11.82 39.00 4.06
85 86 2.647529 ATGTGCTGTGAACATGCATG 57.352 45.000 25.09 25.09 36.89 4.06
86 87 3.349927 AGTATGTGCTGTGAACATGCAT 58.650 40.909 8.94 0.00 41.46 3.96
87 88 2.781923 AGTATGTGCTGTGAACATGCA 58.218 42.857 8.94 0.00 41.46 3.96
88 89 4.631377 TCTTAGTATGTGCTGTGAACATGC 59.369 41.667 1.67 0.54 38.67 4.06
89 90 6.915544 ATCTTAGTATGTGCTGTGAACATG 57.084 37.500 1.67 0.00 38.67 3.21
90 91 7.495934 GGTTATCTTAGTATGTGCTGTGAACAT 59.504 37.037 0.00 0.00 41.14 2.71
91 92 6.816640 GGTTATCTTAGTATGTGCTGTGAACA 59.183 38.462 0.00 0.00 0.00 3.18
92 93 6.258068 GGGTTATCTTAGTATGTGCTGTGAAC 59.742 42.308 0.00 0.00 0.00 3.18
93 94 6.346096 GGGTTATCTTAGTATGTGCTGTGAA 58.654 40.000 0.00 0.00 0.00 3.18
94 95 5.163343 GGGGTTATCTTAGTATGTGCTGTGA 60.163 44.000 0.00 0.00 0.00 3.58
95 96 5.057149 GGGGTTATCTTAGTATGTGCTGTG 58.943 45.833 0.00 0.00 0.00 3.66
96 97 4.969359 AGGGGTTATCTTAGTATGTGCTGT 59.031 41.667 0.00 0.00 0.00 4.40
97 98 5.552870 AGGGGTTATCTTAGTATGTGCTG 57.447 43.478 0.00 0.00 0.00 4.41
98 99 7.685849 TTTAGGGGTTATCTTAGTATGTGCT 57.314 36.000 0.00 0.00 0.00 4.40
99 100 8.741603 TTTTTAGGGGTTATCTTAGTATGTGC 57.258 34.615 0.00 0.00 0.00 4.57
108 109 9.768215 TGATCTGAAATTTTTAGGGGTTATCTT 57.232 29.630 0.00 0.00 0.00 2.40
109 110 9.768215 TTGATCTGAAATTTTTAGGGGTTATCT 57.232 29.630 0.00 0.00 0.00 1.98
114 115 9.725019 GAATTTTGATCTGAAATTTTTAGGGGT 57.275 29.630 16.28 0.00 36.96 4.95
115 116 8.872845 CGAATTTTGATCTGAAATTTTTAGGGG 58.127 33.333 16.28 3.83 36.96 4.79
116 117 9.638239 TCGAATTTTGATCTGAAATTTTTAGGG 57.362 29.630 16.28 7.24 36.96 3.53
126 127 9.773328 GATGTATGTTTCGAATTTTGATCTGAA 57.227 29.630 0.00 0.00 0.00 3.02
127 128 8.945057 TGATGTATGTTTCGAATTTTGATCTGA 58.055 29.630 0.00 0.00 0.00 3.27
128 129 9.558648 TTGATGTATGTTTCGAATTTTGATCTG 57.441 29.630 0.00 0.00 0.00 2.90
129 130 9.778993 CTTGATGTATGTTTCGAATTTTGATCT 57.221 29.630 0.00 0.00 0.00 2.75
130 131 9.773328 TCTTGATGTATGTTTCGAATTTTGATC 57.227 29.630 0.00 0.00 0.00 2.92
132 133 9.958234 TTTCTTGATGTATGTTTCGAATTTTGA 57.042 25.926 0.00 0.00 0.00 2.69
133 134 9.993881 GTTTCTTGATGTATGTTTCGAATTTTG 57.006 29.630 0.00 0.00 0.00 2.44
134 135 9.743057 TGTTTCTTGATGTATGTTTCGAATTTT 57.257 25.926 0.00 0.00 0.00 1.82
135 136 9.398170 CTGTTTCTTGATGTATGTTTCGAATTT 57.602 29.630 0.00 0.00 0.00 1.82
136 137 8.783093 TCTGTTTCTTGATGTATGTTTCGAATT 58.217 29.630 0.00 0.00 0.00 2.17
137 138 8.322906 TCTGTTTCTTGATGTATGTTTCGAAT 57.677 30.769 0.00 0.00 0.00 3.34
138 139 7.722795 TCTGTTTCTTGATGTATGTTTCGAA 57.277 32.000 0.00 0.00 0.00 3.71
139 140 7.722795 TTCTGTTTCTTGATGTATGTTTCGA 57.277 32.000 0.00 0.00 0.00 3.71
140 141 8.781067 TTTTCTGTTTCTTGATGTATGTTTCG 57.219 30.769 0.00 0.00 0.00 3.46
141 142 9.950680 TCTTTTCTGTTTCTTGATGTATGTTTC 57.049 29.630 0.00 0.00 0.00 2.78
142 143 9.956720 CTCTTTTCTGTTTCTTGATGTATGTTT 57.043 29.630 0.00 0.00 0.00 2.83
143 144 9.342308 TCTCTTTTCTGTTTCTTGATGTATGTT 57.658 29.630 0.00 0.00 0.00 2.71
144 145 8.908786 TCTCTTTTCTGTTTCTTGATGTATGT 57.091 30.769 0.00 0.00 0.00 2.29
148 149 9.129532 AGATTTCTCTTTTCTGTTTCTTGATGT 57.870 29.630 0.00 0.00 0.00 3.06
149 150 9.395707 CAGATTTCTCTTTTCTGTTTCTTGATG 57.604 33.333 0.00 0.00 33.72 3.07
150 151 9.129532 ACAGATTTCTCTTTTCTGTTTCTTGAT 57.870 29.630 0.00 0.00 45.88 2.57
151 152 8.511604 ACAGATTTCTCTTTTCTGTTTCTTGA 57.488 30.769 0.00 0.00 45.88 3.02
160 161 9.956640 ACTATTCATGACAGATTTCTCTTTTCT 57.043 29.630 9.90 0.00 0.00 2.52
163 164 9.171877 GGAACTATTCATGACAGATTTCTCTTT 57.828 33.333 9.90 0.00 0.00 2.52
164 165 7.772757 GGGAACTATTCATGACAGATTTCTCTT 59.227 37.037 9.90 0.00 0.00 2.85
165 166 7.278875 GGGAACTATTCATGACAGATTTCTCT 58.721 38.462 9.90 0.00 0.00 3.10
166 167 6.201806 CGGGAACTATTCATGACAGATTTCTC 59.798 42.308 9.90 4.37 0.00 2.87
167 168 6.051717 CGGGAACTATTCATGACAGATTTCT 58.948 40.000 9.90 0.00 0.00 2.52
168 169 6.049149 TCGGGAACTATTCATGACAGATTTC 58.951 40.000 9.90 4.98 0.00 2.17
169 170 5.989477 TCGGGAACTATTCATGACAGATTT 58.011 37.500 9.90 0.00 0.00 2.17
170 171 5.614324 TCGGGAACTATTCATGACAGATT 57.386 39.130 9.90 0.00 0.00 2.40
171 172 5.360591 GTTCGGGAACTATTCATGACAGAT 58.639 41.667 9.90 0.00 38.25 2.90
172 173 4.676986 CGTTCGGGAACTATTCATGACAGA 60.677 45.833 9.90 0.00 39.08 3.41
173 174 3.551890 CGTTCGGGAACTATTCATGACAG 59.448 47.826 9.62 0.00 39.08 3.51
174 175 3.517602 CGTTCGGGAACTATTCATGACA 58.482 45.455 9.62 0.00 39.08 3.58
175 176 2.864343 CCGTTCGGGAACTATTCATGAC 59.136 50.000 9.62 0.00 39.08 3.06
176 177 2.498481 ACCGTTCGGGAACTATTCATGA 59.502 45.455 15.66 0.00 39.08 3.07
177 178 2.901249 ACCGTTCGGGAACTATTCATG 58.099 47.619 15.66 0.00 39.08 3.07
178 179 3.197116 AGAACCGTTCGGGAACTATTCAT 59.803 43.478 15.66 8.05 39.08 2.57
179 180 2.564062 AGAACCGTTCGGGAACTATTCA 59.436 45.455 15.66 0.00 39.08 2.57
180 181 3.119209 AGAGAACCGTTCGGGAACTATTC 60.119 47.826 15.66 11.52 39.08 1.75
181 182 2.830321 AGAGAACCGTTCGGGAACTATT 59.170 45.455 15.66 3.94 39.08 1.73
182 183 2.165845 CAGAGAACCGTTCGGGAACTAT 59.834 50.000 15.66 6.15 39.08 2.12
183 184 1.542915 CAGAGAACCGTTCGGGAACTA 59.457 52.381 15.66 0.00 39.08 2.24
184 185 0.317479 CAGAGAACCGTTCGGGAACT 59.683 55.000 15.66 10.64 39.08 3.01
185 186 0.033090 ACAGAGAACCGTTCGGGAAC 59.967 55.000 15.66 1.45 39.97 3.62
186 187 1.542915 CTACAGAGAACCGTTCGGGAA 59.457 52.381 15.66 0.00 39.97 3.97
187 188 1.171308 CTACAGAGAACCGTTCGGGA 58.829 55.000 15.66 0.00 39.97 5.14
188 189 1.135460 GTCTACAGAGAACCGTTCGGG 60.135 57.143 15.66 2.58 43.62 5.14
189 190 1.811359 AGTCTACAGAGAACCGTTCGG 59.189 52.381 9.81 9.81 31.96 4.30
190 191 4.879104 ATAGTCTACAGAGAACCGTTCG 57.121 45.455 5.62 0.00 31.96 3.95
191 192 6.028987 GTGAATAGTCTACAGAGAACCGTTC 58.971 44.000 2.81 2.81 31.96 3.95
192 193 5.475909 TGTGAATAGTCTACAGAGAACCGTT 59.524 40.000 0.00 0.00 31.96 4.44
193 194 5.008331 TGTGAATAGTCTACAGAGAACCGT 58.992 41.667 0.00 0.00 31.96 4.83
194 195 5.562506 TGTGAATAGTCTACAGAGAACCG 57.437 43.478 0.00 0.00 31.96 4.44
195 196 7.067615 TCAGATGTGAATAGTCTACAGAGAACC 59.932 40.741 0.00 0.00 31.96 3.62
196 197 7.990917 TCAGATGTGAATAGTCTACAGAGAAC 58.009 38.462 0.00 0.00 31.96 3.01
197 198 7.831690 ACTCAGATGTGAATAGTCTACAGAGAA 59.168 37.037 12.67 0.00 29.31 2.87
198 199 7.342581 ACTCAGATGTGAATAGTCTACAGAGA 58.657 38.462 12.67 6.23 30.14 3.10
199 200 7.566760 ACTCAGATGTGAATAGTCTACAGAG 57.433 40.000 0.00 0.00 30.14 3.35
200 201 7.946381 AACTCAGATGTGAATAGTCTACAGA 57.054 36.000 0.00 0.00 30.14 3.41
201 202 8.994429 AAAACTCAGATGTGAATAGTCTACAG 57.006 34.615 0.00 0.00 30.14 2.74
202 203 9.424319 GAAAAACTCAGATGTGAATAGTCTACA 57.576 33.333 0.00 0.00 30.14 2.74
203 204 9.646427 AGAAAAACTCAGATGTGAATAGTCTAC 57.354 33.333 0.00 0.00 30.14 2.59
205 206 9.566432 AAAGAAAAACTCAGATGTGAATAGTCT 57.434 29.630 0.00 0.00 30.14 3.24
230 231 9.574458 TTCGAAACATACATCAAGAAACAAAAA 57.426 25.926 0.00 0.00 0.00 1.94
231 232 9.743057 ATTCGAAACATACATCAAGAAACAAAA 57.257 25.926 0.00 0.00 0.00 2.44
232 233 9.743057 AATTCGAAACATACATCAAGAAACAAA 57.257 25.926 0.00 0.00 0.00 2.83
233 234 9.743057 AAATTCGAAACATACATCAAGAAACAA 57.257 25.926 0.00 0.00 0.00 2.83
234 235 9.743057 AAAATTCGAAACATACATCAAGAAACA 57.257 25.926 0.00 0.00 0.00 2.83
235 236 9.993881 CAAAATTCGAAACATACATCAAGAAAC 57.006 29.630 0.00 0.00 0.00 2.78
236 237 9.958234 TCAAAATTCGAAACATACATCAAGAAA 57.042 25.926 0.00 0.00 0.00 2.52
238 239 9.773328 GATCAAAATTCGAAACATACATCAAGA 57.227 29.630 0.00 0.00 0.00 3.02
239 240 9.778993 AGATCAAAATTCGAAACATACATCAAG 57.221 29.630 0.00 0.00 0.00 3.02
240 241 9.558648 CAGATCAAAATTCGAAACATACATCAA 57.441 29.630 0.00 0.00 0.00 2.57
241 242 8.945057 TCAGATCAAAATTCGAAACATACATCA 58.055 29.630 0.00 0.00 0.00 3.07
242 243 9.773328 TTCAGATCAAAATTCGAAACATACATC 57.227 29.630 0.00 0.31 0.00 3.06
252 253 9.638239 CCCTAAAAATTTCAGATCAAAATTCGA 57.362 29.630 15.22 0.00 35.75 3.71
253 254 8.872845 CCCCTAAAAATTTCAGATCAAAATTCG 58.127 33.333 15.22 7.79 35.75 3.34
254 255 9.725019 ACCCCTAAAAATTTCAGATCAAAATTC 57.275 29.630 15.22 0.00 35.75 2.17
259 260 9.768215 AGATAACCCCTAAAAATTTCAGATCAA 57.232 29.630 0.00 0.00 0.00 2.57
260 261 9.768215 AAGATAACCCCTAAAAATTTCAGATCA 57.232 29.630 0.00 0.00 0.00 2.92
270 271 9.930158 AGCACATATTAAGATAACCCCTAAAAA 57.070 29.630 0.00 0.00 0.00 1.94
271 272 9.349713 CAGCACATATTAAGATAACCCCTAAAA 57.650 33.333 0.00 0.00 0.00 1.52
272 273 8.499406 ACAGCACATATTAAGATAACCCCTAAA 58.501 33.333 0.00 0.00 0.00 1.85
273 274 7.936847 CACAGCACATATTAAGATAACCCCTAA 59.063 37.037 0.00 0.00 0.00 2.69
274 275 7.291416 TCACAGCACATATTAAGATAACCCCTA 59.709 37.037 0.00 0.00 0.00 3.53
275 276 6.101150 TCACAGCACATATTAAGATAACCCCT 59.899 38.462 0.00 0.00 0.00 4.79
276 277 6.296026 TCACAGCACATATTAAGATAACCCC 58.704 40.000 0.00 0.00 0.00 4.95
277 278 7.282224 TGTTCACAGCACATATTAAGATAACCC 59.718 37.037 0.00 0.00 0.00 4.11
278 279 8.208718 TGTTCACAGCACATATTAAGATAACC 57.791 34.615 0.00 0.00 0.00 2.85
279 280 9.655769 CATGTTCACAGCACATATTAAGATAAC 57.344 33.333 0.00 0.00 32.88 1.89
280 281 8.344831 GCATGTTCACAGCACATATTAAGATAA 58.655 33.333 0.00 0.00 32.88 1.75
281 282 7.498570 TGCATGTTCACAGCACATATTAAGATA 59.501 33.333 0.00 0.00 32.88 1.98
282 283 6.319405 TGCATGTTCACAGCACATATTAAGAT 59.681 34.615 0.00 0.00 32.88 2.40
283 284 5.647225 TGCATGTTCACAGCACATATTAAGA 59.353 36.000 0.00 0.00 32.88 2.10
284 285 5.882553 TGCATGTTCACAGCACATATTAAG 58.117 37.500 0.00 0.00 32.88 1.85
285 286 5.893897 TGCATGTTCACAGCACATATTAA 57.106 34.783 0.00 0.00 32.88 1.40
286 287 5.589452 TCATGCATGTTCACAGCACATATTA 59.411 36.000 25.43 0.00 41.60 0.98
287 288 4.399934 TCATGCATGTTCACAGCACATATT 59.600 37.500 25.43 0.00 41.60 1.28
288 289 3.949113 TCATGCATGTTCACAGCACATAT 59.051 39.130 25.43 0.00 41.60 1.78
289 290 3.345414 TCATGCATGTTCACAGCACATA 58.655 40.909 25.43 0.00 41.60 2.29
290 291 2.164338 TCATGCATGTTCACAGCACAT 58.836 42.857 25.43 0.00 41.60 3.21
291 292 1.606903 TCATGCATGTTCACAGCACA 58.393 45.000 25.43 0.00 41.60 4.57
292 293 2.933495 ATCATGCATGTTCACAGCAC 57.067 45.000 25.43 0.00 41.60 4.40
293 294 3.945981 AAATCATGCATGTTCACAGCA 57.054 38.095 25.43 4.73 43.14 4.41
327 328 9.468532 GCCCAAATTTAAATTTAAACATTGCAA 57.531 25.926 26.81 0.00 36.52 4.08
328 329 8.084684 GGCCCAAATTTAAATTTAAACATTGCA 58.915 29.630 26.81 10.33 36.52 4.08
329 330 7.272299 CGGCCCAAATTTAAATTTAAACATTGC 59.728 33.333 26.81 22.20 36.52 3.56
330 331 7.272299 GCGGCCCAAATTTAAATTTAAACATTG 59.728 33.333 26.06 26.06 36.52 2.82
331 332 7.040409 TGCGGCCCAAATTTAAATTTAAACATT 60.040 29.630 22.35 17.48 36.52 2.71
332 333 6.431234 TGCGGCCCAAATTTAAATTTAAACAT 59.569 30.769 22.35 13.34 36.52 2.71
333 334 5.763204 TGCGGCCCAAATTTAAATTTAAACA 59.237 32.000 22.35 11.57 36.52 2.83
334 335 6.242508 TGCGGCCCAAATTTAAATTTAAAC 57.757 33.333 22.35 14.94 36.52 2.01
335 336 6.431234 ACATGCGGCCCAAATTTAAATTTAAA 59.569 30.769 22.44 22.20 36.52 1.52
336 337 5.940470 ACATGCGGCCCAAATTTAAATTTAA 59.060 32.000 22.44 6.54 36.52 1.52
337 338 5.491982 ACATGCGGCCCAAATTTAAATTTA 58.508 33.333 22.44 8.72 36.52 1.40
338 339 4.331108 ACATGCGGCCCAAATTTAAATTT 58.669 34.783 18.40 18.40 39.07 1.82
339 340 3.938334 GACATGCGGCCCAAATTTAAATT 59.062 39.130 7.64 7.64 0.00 1.82
340 341 3.055530 TGACATGCGGCCCAAATTTAAAT 60.056 39.130 0.00 0.00 0.00 1.40
341 342 2.300152 TGACATGCGGCCCAAATTTAAA 59.700 40.909 0.00 0.00 0.00 1.52
342 343 1.895798 TGACATGCGGCCCAAATTTAA 59.104 42.857 0.00 0.00 0.00 1.52
343 344 1.203523 GTGACATGCGGCCCAAATTTA 59.796 47.619 0.00 0.00 0.00 1.40
344 345 0.037419 GTGACATGCGGCCCAAATTT 60.037 50.000 0.00 0.00 0.00 1.82
345 346 1.591183 GTGACATGCGGCCCAAATT 59.409 52.632 0.00 0.00 0.00 1.82
346 347 2.350458 GGTGACATGCGGCCCAAAT 61.350 57.895 0.00 0.00 0.00 2.32
347 348 2.988684 GGTGACATGCGGCCCAAA 60.989 61.111 0.00 0.00 0.00 3.28
353 354 3.126879 ATGCACGGTGACATGCGG 61.127 61.111 13.29 0.00 45.13 5.69
354 355 2.098871 CATGCACGGTGACATGCG 59.901 61.111 22.86 9.21 45.13 4.73
355 356 1.135315 GACATGCACGGTGACATGC 59.865 57.895 28.87 22.01 46.08 4.06
357 358 2.543578 GTGACATGCACGGTGACAT 58.456 52.632 13.29 11.76 37.83 3.06
358 359 4.041617 GTGACATGCACGGTGACA 57.958 55.556 13.29 9.88 37.83 3.58
365 366 0.035152 TGGGATCAGGTGACATGCAC 60.035 55.000 10.63 10.63 46.98 4.57
366 367 0.253894 CTGGGATCAGGTGACATGCA 59.746 55.000 0.00 0.00 37.36 3.96
367 368 0.254178 ACTGGGATCAGGTGACATGC 59.746 55.000 0.00 0.00 44.99 4.06
368 369 1.134280 GGACTGGGATCAGGTGACATG 60.134 57.143 0.00 0.00 44.99 3.21
369 370 1.207791 GGACTGGGATCAGGTGACAT 58.792 55.000 0.00 0.00 44.99 3.06
370 371 0.117140 AGGACTGGGATCAGGTGACA 59.883 55.000 0.00 0.00 44.99 3.58
371 372 1.208293 GAAGGACTGGGATCAGGTGAC 59.792 57.143 0.00 0.00 44.99 3.67
372 373 1.573108 GAAGGACTGGGATCAGGTGA 58.427 55.000 0.00 0.00 44.99 4.02
373 374 0.543749 GGAAGGACTGGGATCAGGTG 59.456 60.000 0.00 0.00 44.99 4.00
374 375 0.978146 CGGAAGGACTGGGATCAGGT 60.978 60.000 0.00 0.00 44.99 4.00
375 376 1.826024 CGGAAGGACTGGGATCAGG 59.174 63.158 0.00 0.00 44.99 3.86
400 401 2.543012 CACATCAGATGCTAGGCGAAAG 59.457 50.000 10.59 0.00 0.00 2.62
401 402 2.168313 TCACATCAGATGCTAGGCGAAA 59.832 45.455 10.59 0.00 0.00 3.46
402 403 1.756538 TCACATCAGATGCTAGGCGAA 59.243 47.619 10.59 0.00 0.00 4.70
403 404 1.339291 CTCACATCAGATGCTAGGCGA 59.661 52.381 10.59 0.00 0.00 5.54
404 405 1.780806 CTCACATCAGATGCTAGGCG 58.219 55.000 10.59 0.00 0.00 5.52
405 406 1.510776 GCTCACATCAGATGCTAGGC 58.489 55.000 10.59 6.43 0.00 3.93
406 407 1.780806 CGCTCACATCAGATGCTAGG 58.219 55.000 10.59 0.23 0.00 3.02
407 408 1.138337 GCGCTCACATCAGATGCTAG 58.862 55.000 10.59 8.99 0.00 3.42
408 409 0.249615 GGCGCTCACATCAGATGCTA 60.250 55.000 10.59 0.00 0.00 3.49
409 410 1.523258 GGCGCTCACATCAGATGCT 60.523 57.895 10.59 0.00 0.00 3.79
410 411 2.879070 CGGCGCTCACATCAGATGC 61.879 63.158 10.59 0.00 0.00 3.91
411 412 2.879070 GCGGCGCTCACATCAGATG 61.879 63.158 26.86 9.03 0.00 2.90
412 413 1.738346 TAGCGGCGCTCACATCAGAT 61.738 55.000 39.97 13.37 40.44 2.90
413 414 2.341807 CTAGCGGCGCTCACATCAGA 62.342 60.000 39.97 17.53 40.44 3.27
414 415 1.948138 CTAGCGGCGCTCACATCAG 60.948 63.158 39.97 24.78 40.44 2.90
415 416 2.104928 CTAGCGGCGCTCACATCA 59.895 61.111 39.97 19.19 40.44 3.07
416 417 1.659954 CTCTAGCGGCGCTCACATC 60.660 63.158 39.97 3.48 40.44 3.06
425 426 4.512944 TCATTTCATCAAATCTCTAGCGGC 59.487 41.667 0.00 0.00 28.97 6.53
428 429 8.218338 TCCTTTCATTTCATCAAATCTCTAGC 57.782 34.615 0.00 0.00 28.97 3.42
437 438 7.345422 TCAGTTGTTCCTTTCATTTCATCAA 57.655 32.000 0.00 0.00 0.00 2.57
438 439 6.957920 TCAGTTGTTCCTTTCATTTCATCA 57.042 33.333 0.00 0.00 0.00 3.07
448 449 3.631250 TCTTGGCTTCAGTTGTTCCTTT 58.369 40.909 0.00 0.00 0.00 3.11
595 600 3.861797 CGGGGTCTCAATCGGGGG 61.862 72.222 0.00 0.00 0.00 5.40
646 652 4.993945 CTGAACGCACGCACGCAC 62.994 66.667 0.00 0.00 36.19 5.34
649 655 4.993945 GCACTGAACGCACGCACG 62.994 66.667 0.00 0.00 39.50 5.34
674 683 0.600255 CTTCTGCCGTTTCCGTGTCT 60.600 55.000 0.00 0.00 0.00 3.41
675 684 1.860078 CTTCTGCCGTTTCCGTGTC 59.140 57.895 0.00 0.00 0.00 3.67
775 813 0.981277 ACTGCACCGGGCCTACTAAT 60.981 55.000 6.32 0.00 43.89 1.73
784 822 1.572447 CACGTAAAACTGCACCGGG 59.428 57.895 6.32 0.00 0.00 5.73
787 825 3.058501 AGTTATGCACGTAAAACTGCACC 60.059 43.478 0.00 0.00 45.91 5.01
790 828 4.786575 GCTTAGTTATGCACGTAAAACTGC 59.213 41.667 11.89 1.23 34.23 4.40
791 829 5.922546 TGCTTAGTTATGCACGTAAAACTG 58.077 37.500 11.89 1.62 34.23 3.16
863 901 1.411246 TCGGGTTGGATTAGGACGATG 59.589 52.381 0.00 0.00 0.00 3.84
864 902 1.784358 TCGGGTTGGATTAGGACGAT 58.216 50.000 0.00 0.00 0.00 3.73
894 932 4.265556 GCGTGCTTGCGGTTATATATAGAG 59.734 45.833 0.00 0.00 0.00 2.43
897 935 3.915536 TGCGTGCTTGCGGTTATATATA 58.084 40.909 0.00 0.00 37.81 0.86
898 936 2.736721 CTGCGTGCTTGCGGTTATATAT 59.263 45.455 1.89 0.00 36.47 0.86
1029 1097 2.432628 GTGGTCGCCGGTGAAGAG 60.433 66.667 21.49 0.00 0.00 2.85
1030 1098 3.998672 GGTGGTCGCCGGTGAAGA 61.999 66.667 21.49 6.16 0.00 2.87
1131 1199 1.749033 GCGGGATAGAACCAGGGAG 59.251 63.158 0.00 0.00 0.00 4.30
1432 1541 2.300152 AGATATGGCATACACAGACCGG 59.700 50.000 9.83 0.00 0.00 5.28
1545 1655 1.807573 CTTCCGCTCGAACCAGCTC 60.808 63.158 0.00 0.00 37.25 4.09
1547 1657 2.048127 ACTTCCGCTCGAACCAGC 60.048 61.111 0.00 0.00 35.90 4.85
1577 1687 4.950050 ACTAGAAAATATGGCCTGACTCG 58.050 43.478 3.32 0.00 0.00 4.18
1603 1713 8.320338 TCCCCTTTTAAATGGAAAAACAACTA 57.680 30.769 19.15 0.00 0.00 2.24
1607 1717 7.439108 TTCTCCCCTTTTAAATGGAAAAACA 57.561 32.000 19.15 0.00 0.00 2.83
1624 1734 2.493675 GCAGTGGAATCTTTTTCTCCCC 59.506 50.000 0.00 0.00 0.00 4.81
1794 1904 6.691818 GCAGATTCATGTTGCTTCTCAAATAG 59.308 38.462 0.00 0.00 36.26 1.73
1795 1905 6.376299 AGCAGATTCATGTTGCTTCTCAAATA 59.624 34.615 9.72 0.00 45.28 1.40
2039 2325 9.893634 ATGATGCATTTTGATTCTAATTTGGAA 57.106 25.926 0.00 0.00 0.00 3.53
2063 2350 4.340950 ACAGACACCAAACCTAACCAAATG 59.659 41.667 0.00 0.00 0.00 2.32
2187 3084 5.371526 CCCATATACTGCATCAAACACTCT 58.628 41.667 0.00 0.00 0.00 3.24
2224 3121 6.537301 TCATCATTACGGTACACCTCAAAATC 59.463 38.462 0.00 0.00 0.00 2.17
2328 3225 4.993028 TGTAATATGGTATGGCCCCTTTC 58.007 43.478 0.00 0.00 36.04 2.62
2336 3233 9.734620 CATCAACAAAGTTGTAATATGGTATGG 57.265 33.333 9.43 0.00 41.31 2.74
2377 3274 6.513180 TCGTGGTTTCATCCTACATAAGATC 58.487 40.000 0.00 0.00 0.00 2.75
2619 3517 8.511604 AAAACCATGTGTCCATAGAGATAAAG 57.488 34.615 0.00 0.00 0.00 1.85
2712 3610 1.142667 TGCATCACACCAGAAGGAACA 59.857 47.619 0.00 0.00 38.69 3.18
2916 3827 7.396540 AAAGCACTCCTGGTTATCATAAAAG 57.603 36.000 0.00 0.00 37.11 2.27
3132 4059 5.382618 AATCAGAAGCTCAATTTGGACAC 57.617 39.130 0.00 0.00 0.00 3.67
3200 4132 4.284490 TCCTCAATGACCAGGCTATGATAC 59.716 45.833 0.00 0.00 0.00 2.24
3210 4142 2.026449 AGCTTTCCTCCTCAATGACCAG 60.026 50.000 0.00 0.00 0.00 4.00
3365 4303 9.413048 GAAGAGTTACACCATATATCAGTTAGC 57.587 37.037 0.00 0.00 0.00 3.09
3366 4304 9.915629 GGAAGAGTTACACCATATATCAGTTAG 57.084 37.037 0.00 0.00 0.00 2.34
3369 4307 7.015682 CCTGGAAGAGTTACACCATATATCAGT 59.984 40.741 0.00 0.00 34.07 3.41
3372 4310 6.295916 CCCCTGGAAGAGTTACACCATATATC 60.296 46.154 0.00 0.00 34.07 1.63
3373 4311 5.548056 CCCCTGGAAGAGTTACACCATATAT 59.452 44.000 0.00 0.00 34.07 0.86
3374 4312 4.905456 CCCCTGGAAGAGTTACACCATATA 59.095 45.833 0.00 0.00 34.07 0.86
3442 4397 3.525537 TCTCGCAAAGTTGAGGATGATC 58.474 45.455 0.00 0.00 33.00 2.92
3518 4481 5.045505 TCTCTACTTCCTCTAACTGCTCTGA 60.046 44.000 0.00 0.00 0.00 3.27
3613 4599 0.883833 AATGGCAACGGAAAGCTCTG 59.116 50.000 0.00 0.00 42.51 3.35
3665 4656 4.608948 ATGAAGTTCATACGGGATCTCC 57.391 45.455 16.85 0.00 34.88 3.71
3717 4708 6.263168 AGCTTCCACCGATTTATTATTTGAGG 59.737 38.462 0.00 0.00 0.00 3.86
3776 4767 1.072806 TCTGAAGCACTGTGCCAGAAT 59.927 47.619 27.95 11.43 46.52 2.40
3803 4794 5.057149 ACAAATAGCGAACACTCTGAACTT 58.943 37.500 0.00 0.00 0.00 2.66
3868 4922 3.331889 AGGAGCTGGAAAGGATTTTCTCA 59.668 43.478 0.00 0.00 39.27 3.27
3885 4939 1.137282 GGTCCACTGTTAGCTAGGAGC 59.863 57.143 11.15 11.15 42.84 4.70
3897 4980 1.290324 CTGTCAGGTCGGTCCACTG 59.710 63.158 0.00 0.00 39.02 3.66
4252 5335 2.882761 GGCGGTGGTTTTACTCTTCTTT 59.117 45.455 0.00 0.00 0.00 2.52
4253 5336 2.105993 AGGCGGTGGTTTTACTCTTCTT 59.894 45.455 0.00 0.00 0.00 2.52
4254 5337 1.697982 AGGCGGTGGTTTTACTCTTCT 59.302 47.619 0.00 0.00 0.00 2.85
4255 5338 2.074576 GAGGCGGTGGTTTTACTCTTC 58.925 52.381 0.00 0.00 0.00 2.87
4256 5339 1.697982 AGAGGCGGTGGTTTTACTCTT 59.302 47.619 0.00 0.00 31.76 2.85
4257 5340 1.349067 AGAGGCGGTGGTTTTACTCT 58.651 50.000 0.00 0.00 0.00 3.24
4258 5341 3.538634 ATAGAGGCGGTGGTTTTACTC 57.461 47.619 0.00 0.00 0.00 2.59
4259 5342 5.425196 TTTATAGAGGCGGTGGTTTTACT 57.575 39.130 0.00 0.00 0.00 2.24
4304 5387 0.907704 TATGGTGCGTTGGACTCCCT 60.908 55.000 0.00 0.00 0.00 4.20
4365 5449 1.998315 CAGACAGAATTGAGCCGACAG 59.002 52.381 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.