Multiple sequence alignment - TraesCS2B01G345300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G345300 chr2B 100.000 3132 0 0 819 3950 492148480 492145349 0.000000e+00 5784.0
1 TraesCS2B01G345300 chr2B 100.000 530 0 0 1 530 492149298 492148769 0.000000e+00 979.0
2 TraesCS2B01G345300 chr2D 94.406 3182 110 25 819 3950 419783834 419780671 0.000000e+00 4828.0
3 TraesCS2B01G345300 chr2D 92.048 503 24 12 1 488 419784473 419783972 0.000000e+00 693.0
4 TraesCS2B01G345300 chr2D 95.833 48 2 0 474 521 419783957 419783910 1.180000e-10 78.7
5 TraesCS2B01G345300 chr2A 91.858 2530 126 40 819 3302 570192738 570195233 0.000000e+00 3458.0
6 TraesCS2B01G345300 chr2A 89.466 674 37 16 3290 3950 570195262 570195914 0.000000e+00 821.0
7 TraesCS2B01G345300 chr2A 93.425 365 18 5 1 359 570192101 570192465 1.620000e-148 536.0
8 TraesCS2B01G345300 chr7D 89.062 192 21 0 1052 1243 531553840 531554031 5.100000e-59 239.0
9 TraesCS2B01G345300 chr7A 85.650 223 29 2 1024 1243 611969561 611969783 8.540000e-57 231.0
10 TraesCS2B01G345300 chr7A 85.714 210 27 2 1024 1230 611776776 611776985 6.650000e-53 219.0
11 TraesCS2B01G345300 chr5D 86.294 197 26 1 1047 1243 318059886 318060081 3.090000e-51 213.0
12 TraesCS2B01G345300 chr5A 86.294 197 26 1 1047 1243 412913483 412913678 3.090000e-51 213.0
13 TraesCS2B01G345300 chr3B 77.188 377 51 23 1 364 21405465 21405819 1.870000e-43 187.0
14 TraesCS2B01G345300 chr3D 79.468 263 22 21 1 245 14449408 14449656 1.470000e-34 158.0
15 TraesCS2B01G345300 chr3A 97.674 86 2 0 1 86 22228927 22228842 8.840000e-32 148.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G345300 chr2B 492145349 492149298 3949 True 3381.500000 5784 100.000000 1 3950 2 chr2B.!!$R1 3949
1 TraesCS2B01G345300 chr2D 419780671 419784473 3802 True 1866.566667 4828 94.095667 1 3950 3 chr2D.!!$R1 3949
2 TraesCS2B01G345300 chr2A 570192101 570195914 3813 False 1605.000000 3458 91.583000 1 3950 3 chr2A.!!$F1 3949

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
529 636 0.036765 TCGGCCCATTACTGACACAC 60.037 55.0 0.00 0.00 0.0 3.82 F
1344 1476 0.317436 TTTTGTCAACGCGCATGTCC 60.317 50.0 5.73 2.16 0.0 4.02 F
2129 2275 0.396435 TTTCTGATCGGCCACTGTGT 59.604 50.0 2.24 0.00 0.0 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2178 2324 0.341258 TGCTCCCTCTTCATCTCCCT 59.659 55.0 0.00 0.00 0.00 4.20 R
2652 2832 0.873743 GCTTCTCCAATCCGAGCTCG 60.874 60.0 29.06 29.06 39.44 5.03 R
3501 3741 0.392706 TCTGAGACGCCTTGAGCAAA 59.607 50.0 0.00 0.00 44.04 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 1.001641 CACCCCTGAAGGCAAGAGG 60.002 63.158 0.00 0.00 0.00 3.69
100 101 0.935194 ACCTCCGAGGGGAAGTAGAT 59.065 55.000 18.99 0.00 43.27 1.98
111 112 5.230759 AGGGGAAGTAGATGATTCAGGAAT 58.769 41.667 0.00 0.00 0.00 3.01
193 203 3.430042 AAAGCCAAGCAGATTCAGAGA 57.570 42.857 0.00 0.00 0.00 3.10
206 219 6.287525 CAGATTCAGAGAGGAATAAGGGAAC 58.712 44.000 0.00 0.00 37.61 3.62
287 302 4.761910 CGTATGAACTTCATTCGGTCAG 57.238 45.455 18.22 0.00 41.75 3.51
310 325 2.355837 TGCGTCGTGGTGCTCTTC 60.356 61.111 0.00 0.00 0.00 2.87
396 411 2.804572 GCACAGTGCTTCAGACTTCAGA 60.805 50.000 18.92 0.00 40.96 3.27
455 533 6.014925 GGTTTATGCCTTTCCCAACTCTTTTA 60.015 38.462 0.00 0.00 0.00 1.52
456 534 7.310423 GGTTTATGCCTTTCCCAACTCTTTTAT 60.310 37.037 0.00 0.00 0.00 1.40
490 597 8.805137 GAAAATCCTTTCCAGCTCCTAGCTAAC 61.805 44.444 0.24 0.00 41.44 2.34
523 630 0.811616 GACAGCTCGGCCCATTACTG 60.812 60.000 0.00 0.33 0.00 2.74
525 632 0.811616 CAGCTCGGCCCATTACTGAC 60.812 60.000 0.00 0.00 0.00 3.51
526 633 1.220749 GCTCGGCCCATTACTGACA 59.779 57.895 0.00 0.00 0.00 3.58
529 636 0.036765 TCGGCCCATTACTGACACAC 60.037 55.000 0.00 0.00 0.00 3.82
897 1004 3.215151 AGCGATTCAGATAGGACGAGAA 58.785 45.455 0.00 0.00 0.00 2.87
958 1066 4.200283 CTGTCCGCCTCTCTCGCC 62.200 72.222 0.00 0.00 0.00 5.54
1233 1356 2.512896 GCGATCTCCATGGGCCTT 59.487 61.111 13.02 0.00 0.00 4.35
1267 1393 1.047801 GATCCCTCCTCCTCTGCTTC 58.952 60.000 0.00 0.00 0.00 3.86
1283 1409 1.070821 CTTCGCTTCTCAATCACGCA 58.929 50.000 0.00 0.00 0.00 5.24
1339 1471 1.064803 AGATTGTTTTGTCAACGCGCA 59.935 42.857 5.73 0.00 0.00 6.09
1344 1476 0.317436 TTTTGTCAACGCGCATGTCC 60.317 50.000 5.73 2.16 0.00 4.02
1348 1480 3.112075 CAACGCGCATGTCCGACT 61.112 61.111 5.73 0.00 0.00 4.18
1349 1481 2.357034 AACGCGCATGTCCGACTT 60.357 55.556 5.73 0.00 0.00 3.01
1350 1482 1.080366 AACGCGCATGTCCGACTTA 60.080 52.632 5.73 0.00 0.00 2.24
1351 1483 0.668096 AACGCGCATGTCCGACTTAA 60.668 50.000 5.73 0.00 0.00 1.85
1352 1484 1.343821 CGCGCATGTCCGACTTAAC 59.656 57.895 8.75 0.00 0.00 2.01
1353 1485 1.343821 GCGCATGTCCGACTTAACG 59.656 57.895 0.30 2.93 0.00 3.18
1424 1565 0.459237 GAGACACATGGACTCTGGCG 60.459 60.000 0.00 0.00 0.00 5.69
1442 1583 0.992802 CGCTCTGCCTCTTCGTTTAC 59.007 55.000 0.00 0.00 0.00 2.01
1463 1604 1.852895 CGCAGTTCTTACTATGGCGAC 59.147 52.381 0.00 0.00 43.19 5.19
1513 1654 2.433604 ACCCTGCATCTCTGTATCTGTG 59.566 50.000 0.00 0.00 0.00 3.66
1514 1655 2.481854 CCTGCATCTCTGTATCTGTGC 58.518 52.381 0.00 0.00 0.00 4.57
1523 1664 4.033990 TCTGTATCTGTGCGAGTGATTC 57.966 45.455 0.00 0.00 0.00 2.52
1674 1815 6.332735 TGTAGTTATGCACATCCTAGCTAG 57.667 41.667 14.20 14.20 0.00 3.42
1676 1817 7.002276 TGTAGTTATGCACATCCTAGCTAGTA 58.998 38.462 19.31 3.96 0.00 1.82
1736 1877 4.085357 ACATATATTCACCACGGCACAT 57.915 40.909 0.00 0.00 0.00 3.21
1757 1898 1.510623 GTGCGTGCTGAATCTTGCG 60.511 57.895 0.00 0.00 0.00 4.85
1764 1905 3.424829 CGTGCTGAATCTTGCGTTGTTAT 60.425 43.478 0.00 0.00 0.00 1.89
1765 1906 4.091424 GTGCTGAATCTTGCGTTGTTATC 58.909 43.478 0.00 0.00 0.00 1.75
1768 1909 4.494855 GCTGAATCTTGCGTTGTTATCTCC 60.495 45.833 0.00 0.00 0.00 3.71
1770 1911 4.870426 TGAATCTTGCGTTGTTATCTCCTC 59.130 41.667 0.00 0.00 0.00 3.71
1785 1926 0.674581 TCCTCAACGCCTGCTCATTG 60.675 55.000 0.00 0.00 0.00 2.82
1834 1977 2.987821 GCTGTCTAACCGTCTGTTCTTC 59.012 50.000 0.00 0.00 38.42 2.87
1835 1978 3.305471 GCTGTCTAACCGTCTGTTCTTCT 60.305 47.826 0.00 0.00 38.42 2.85
1837 1980 4.142790 TGTCTAACCGTCTGTTCTTCTCT 58.857 43.478 0.00 0.00 38.42 3.10
1859 2002 2.638480 TAGCCTCAACTGCAACTTGT 57.362 45.000 4.19 0.00 0.00 3.16
1880 2023 3.277142 AAATTACCCTCATGTCGACCC 57.723 47.619 14.12 0.00 0.00 4.46
1881 2024 1.874129 ATTACCCTCATGTCGACCCA 58.126 50.000 14.12 0.00 0.00 4.51
1885 2028 1.271379 ACCCTCATGTCGACCCAAAAG 60.271 52.381 14.12 3.51 0.00 2.27
1886 2029 1.003118 CCCTCATGTCGACCCAAAAGA 59.997 52.381 14.12 1.14 0.00 2.52
1888 2031 2.939103 CCTCATGTCGACCCAAAAGATC 59.061 50.000 14.12 0.00 0.00 2.75
1908 2052 1.476488 CATTGGGGAAAAGTTAGCCCG 59.524 52.381 6.83 0.00 42.99 6.13
1988 2133 9.445786 CACTTTATGTTAACATCACGACTTTTT 57.554 29.630 24.00 0.00 37.76 1.94
2014 2159 2.503356 TCAAAAAGTGCCCACAAATGGT 59.497 40.909 0.82 0.00 45.66 3.55
2065 2210 3.565516 TGTCGAGAAAGACAAGATCACG 58.434 45.455 0.00 0.00 46.81 4.35
2119 2265 6.031471 TGCATGATTGTGAATTTTCTGATCG 58.969 36.000 0.00 0.00 0.00 3.69
2129 2275 0.396435 TTTCTGATCGGCCACTGTGT 59.604 50.000 2.24 0.00 0.00 3.72
2178 2324 1.135139 GCGAGGCAGATCACTACAAGA 59.865 52.381 0.00 0.00 0.00 3.02
2274 2421 1.285280 CCAGATTCCCCCAGTGTGTA 58.715 55.000 0.00 0.00 0.00 2.90
2320 2469 7.863877 ACCGTTGGTATTTTGACTTGTTTAATC 59.136 33.333 0.00 0.00 32.11 1.75
2364 2513 3.806975 TGGGGATATCATGGCAGAGTAT 58.193 45.455 4.83 0.00 0.00 2.12
2394 2543 0.882042 CGCATGAGTATGGCCCTGTC 60.882 60.000 0.00 0.00 34.79 3.51
2537 2717 3.493877 CACAGAGCTGTCAAGACTGAAAG 59.506 47.826 10.73 0.00 42.83 2.62
2580 2760 5.105756 ACTGTAAAGAAAGCAAAGCAACTGT 60.106 36.000 0.00 0.00 0.00 3.55
2621 2801 2.642427 TGCGTGTGATAGGCATGATTT 58.358 42.857 0.00 0.00 44.54 2.17
2635 2815 4.879545 GGCATGATTTCTTTACTAACCGGA 59.120 41.667 9.46 0.00 0.00 5.14
2652 2832 2.614057 CCGGAGCAATGTATTCAGGTTC 59.386 50.000 0.00 0.00 0.00 3.62
2904 3084 4.881850 ACTACTATTATTGGTGCTGTTGCC 59.118 41.667 0.00 0.00 38.71 4.52
3077 3257 2.625737 TCAGTTGCAGATGAAGCTAGC 58.374 47.619 6.62 6.62 0.00 3.42
3260 3447 6.263842 CCAACATAACTGACCATATCAAGCAT 59.736 38.462 0.00 0.00 36.69 3.79
3287 3474 5.854010 TTTTATGCAGACTCGGACTCTAT 57.146 39.130 0.00 0.00 0.00 1.98
3555 3796 6.427853 TCAAGTAAACATCTGTCACCATCTTG 59.572 38.462 0.00 0.00 0.00 3.02
3605 3846 9.758651 AAATTACAAAACCAAAAGACCATCTAC 57.241 29.630 0.00 0.00 0.00 2.59
3641 3882 0.456221 ATGCTACGCTGCGAAGTAGT 59.544 50.000 30.47 7.50 43.91 2.73
3642 3883 1.089112 TGCTACGCTGCGAAGTAGTA 58.911 50.000 30.47 16.14 43.91 1.82
3643 3884 1.674441 TGCTACGCTGCGAAGTAGTAT 59.326 47.619 30.47 5.86 43.91 2.12
3644 3885 2.286831 TGCTACGCTGCGAAGTAGTATC 60.287 50.000 30.47 5.56 43.91 2.24
3831 4072 2.287849 GGCTGGTTTCTTCTTGACAAGC 60.288 50.000 10.50 0.00 0.00 4.01
3914 4155 7.387397 CAGCTCTTCAGAATCAGTAACTTTTCT 59.613 37.037 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 3.525537 TCTCGCAAAGTTGAGGATGATC 58.474 45.455 0.00 0.00 33.00 2.92
111 112 5.045505 TCTCTACTTCCTCTAACTGCTCTGA 60.046 44.000 0.00 0.00 0.00 3.27
193 203 4.324641 GGAAAGCTCTGTTCCCTTATTCCT 60.325 45.833 4.53 0.00 38.95 3.36
206 219 0.883833 AATGGCAACGGAAAGCTCTG 59.116 50.000 0.00 0.00 42.51 3.35
258 273 4.608948 ATGAAGTTCATACGGGATCTCC 57.391 45.455 16.85 0.00 34.88 3.71
287 302 1.131826 GCACCACGACGCACATAAC 59.868 57.895 0.00 0.00 0.00 1.89
310 325 6.263168 AGCTTCCACCGATTTATTATTTGAGG 59.737 38.462 0.00 0.00 0.00 3.86
369 384 1.072806 TCTGAAGCACTGTGCCAGAAT 59.927 47.619 27.95 11.43 46.52 2.40
396 411 5.057149 ACAAATAGCGAACACTCTGAACTT 58.943 37.500 0.00 0.00 0.00 2.66
461 539 3.331889 AGGAGCTGGAAAGGATTTTCTCA 59.668 43.478 0.00 0.00 39.27 3.27
478 556 1.137282 GGTCCACTGTTAGCTAGGAGC 59.863 57.143 11.15 11.15 42.84 4.70
490 597 1.290324 CTGTCAGGTCGGTCCACTG 59.710 63.158 0.00 0.00 39.02 3.66
845 952 2.882761 GGCGGTGGTTTTACTCTTCTTT 59.117 45.455 0.00 0.00 0.00 2.52
846 953 2.105993 AGGCGGTGGTTTTACTCTTCTT 59.894 45.455 0.00 0.00 0.00 2.52
847 954 1.697982 AGGCGGTGGTTTTACTCTTCT 59.302 47.619 0.00 0.00 0.00 2.85
848 955 2.074576 GAGGCGGTGGTTTTACTCTTC 58.925 52.381 0.00 0.00 0.00 2.87
849 956 1.697982 AGAGGCGGTGGTTTTACTCTT 59.302 47.619 0.00 0.00 31.76 2.85
850 957 1.349067 AGAGGCGGTGGTTTTACTCT 58.651 50.000 0.00 0.00 0.00 3.24
851 958 3.538634 ATAGAGGCGGTGGTTTTACTC 57.461 47.619 0.00 0.00 0.00 2.59
852 959 5.425196 TTTATAGAGGCGGTGGTTTTACT 57.575 39.130 0.00 0.00 0.00 2.24
897 1004 0.907704 TATGGTGCGTTGGACTCCCT 60.908 55.000 0.00 0.00 0.00 4.20
958 1066 1.998315 CAGACAGAATTGAGCCGACAG 59.002 52.381 0.00 0.00 0.00 3.51
1233 1356 1.492764 GGATCGGAAGTTACCCTCCA 58.507 55.000 2.63 0.00 32.10 3.86
1267 1393 1.421485 GGTGCGTGATTGAGAAGCG 59.579 57.895 0.00 0.00 0.00 4.68
1335 1467 1.343821 CGTTAAGTCGGACATGCGC 59.656 57.895 11.27 0.00 0.00 6.09
1344 1476 7.224753 TCTGTACTATAGTTACCCGTTAAGTCG 59.775 40.741 11.40 0.00 0.00 4.18
1348 1480 9.003658 GCTATCTGTACTATAGTTACCCGTTAA 57.996 37.037 11.40 0.00 30.91 2.01
1349 1481 7.331934 CGCTATCTGTACTATAGTTACCCGTTA 59.668 40.741 11.40 0.00 30.91 3.18
1350 1482 6.148480 CGCTATCTGTACTATAGTTACCCGTT 59.852 42.308 11.40 0.00 30.91 4.44
1351 1483 5.641209 CGCTATCTGTACTATAGTTACCCGT 59.359 44.000 11.40 0.00 30.91 5.28
1352 1484 5.447010 GCGCTATCTGTACTATAGTTACCCG 60.447 48.000 11.40 5.18 30.91 5.28
1353 1485 5.447010 CGCGCTATCTGTACTATAGTTACCC 60.447 48.000 11.40 0.00 30.91 3.69
1354 1486 5.121454 ACGCGCTATCTGTACTATAGTTACC 59.879 44.000 11.40 0.52 30.91 2.85
1355 1487 6.163159 ACGCGCTATCTGTACTATAGTTAC 57.837 41.667 11.40 7.93 30.91 2.50
1424 1565 1.360820 GGTAAACGAAGAGGCAGAGC 58.639 55.000 0.00 0.00 0.00 4.09
1442 1583 1.202371 TCGCCATAGTAAGAACTGCGG 60.202 52.381 0.00 0.00 42.64 5.69
1463 1604 4.886496 TGATGCATCTCCCTAATCTCTG 57.114 45.455 26.32 0.00 0.00 3.35
1499 1640 3.282885 TCACTCGCACAGATACAGAGAT 58.717 45.455 0.00 0.00 33.53 2.75
1513 1654 8.343366 TCAATATATCTATACCGAATCACTCGC 58.657 37.037 0.00 0.00 46.71 5.03
1674 1815 9.967346 TGATCTAGCTTCATAACATACAACTAC 57.033 33.333 0.00 0.00 0.00 2.73
1676 1817 9.539825 CTTGATCTAGCTTCATAACATACAACT 57.460 33.333 0.00 0.00 0.00 3.16
1736 1877 0.587768 CAAGATTCAGCACGCACACA 59.412 50.000 0.00 0.00 0.00 3.72
1741 1882 1.061799 CAACGCAAGATTCAGCACGC 61.062 55.000 0.00 0.00 43.62 5.34
1757 1898 2.673368 CAGGCGTTGAGGAGATAACAAC 59.327 50.000 0.00 0.00 39.96 3.32
1764 1905 1.260538 ATGAGCAGGCGTTGAGGAGA 61.261 55.000 0.00 0.00 0.00 3.71
1765 1906 0.392193 AATGAGCAGGCGTTGAGGAG 60.392 55.000 0.00 0.00 0.00 3.69
1768 1909 0.877071 AACAATGAGCAGGCGTTGAG 59.123 50.000 11.55 0.00 38.00 3.02
1770 1911 0.877071 AGAACAATGAGCAGGCGTTG 59.123 50.000 0.00 0.00 39.93 4.10
1834 1977 3.817647 AGTTGCAGTTGAGGCTAAAAGAG 59.182 43.478 0.00 0.00 0.00 2.85
1835 1978 3.820557 AGTTGCAGTTGAGGCTAAAAGA 58.179 40.909 0.00 0.00 0.00 2.52
1837 1980 3.699038 ACAAGTTGCAGTTGAGGCTAAAA 59.301 39.130 15.67 0.00 32.96 1.52
1859 2002 3.775866 TGGGTCGACATGAGGGTAATTTA 59.224 43.478 18.91 0.00 0.00 1.40
1880 2023 6.591448 GCTAACTTTTCCCCAATGATCTTTTG 59.409 38.462 0.00 0.00 0.00 2.44
1881 2024 6.295859 GGCTAACTTTTCCCCAATGATCTTTT 60.296 38.462 0.00 0.00 0.00 2.27
1885 2028 3.384789 GGGCTAACTTTTCCCCAATGATC 59.615 47.826 0.00 0.00 37.46 2.92
1886 2029 3.374764 GGGCTAACTTTTCCCCAATGAT 58.625 45.455 0.00 0.00 37.46 2.45
1888 2031 1.476488 CGGGCTAACTTTTCCCCAATG 59.524 52.381 0.00 0.00 37.36 2.82
1908 2052 1.344942 CGCGCACTTGTCTACCTCAC 61.345 60.000 8.75 0.00 0.00 3.51
1913 2057 0.736325 ATGTCCGCGCACTTGTCTAC 60.736 55.000 8.75 0.00 0.00 2.59
1988 2133 4.478206 TTGTGGGCACTTTTTGAATTGA 57.522 36.364 0.00 0.00 0.00 2.57
2028 2173 5.617252 TCTCGACAGTTTAAAGGGACAAAT 58.383 37.500 0.00 0.00 0.00 2.32
2029 2174 5.026038 TCTCGACAGTTTAAAGGGACAAA 57.974 39.130 0.00 0.00 0.00 2.83
2047 2192 3.736252 ACAACGTGATCTTGTCTTTCTCG 59.264 43.478 0.00 0.00 33.84 4.04
2065 2210 6.092807 TGGGCACTTTTTGAATTGTAAACAAC 59.907 34.615 0.00 0.00 38.86 3.32
2178 2324 0.341258 TGCTCCCTCTTCATCTCCCT 59.659 55.000 0.00 0.00 0.00 4.20
2274 2421 3.081804 GTGGTTAGGCTGCAAGTTACAT 58.918 45.455 0.50 0.00 35.30 2.29
2320 2469 2.158943 TCTCAGCAGCCTCTGAATGATG 60.159 50.000 6.91 0.00 41.99 3.07
2364 2513 3.664025 CTCATGCGGTTCGAGCCCA 62.664 63.158 13.19 11.85 0.00 5.36
2430 2579 7.601705 TGTCATATACCTCATCATGAACTCA 57.398 36.000 0.00 0.00 0.00 3.41
2502 2682 4.641094 ACAGCTCTGTGGTAGTATCTACAC 59.359 45.833 1.15 0.00 43.11 2.90
2568 2748 6.820470 TGTTAATTGTTACAGTTGCTTTGC 57.180 33.333 3.33 0.00 0.00 3.68
2580 2760 7.696035 CACGCAATATGCTCTTGTTAATTGTTA 59.304 33.333 0.43 0.00 42.25 2.41
2621 2801 4.546829 ACATTGCTCCGGTTAGTAAAGA 57.453 40.909 0.00 0.00 0.00 2.52
2635 2815 2.939103 GCTCGAACCTGAATACATTGCT 59.061 45.455 0.00 0.00 0.00 3.91
2652 2832 0.873743 GCTTCTCCAATCCGAGCTCG 60.874 60.000 29.06 29.06 39.44 5.03
2868 3048 1.095600 TAGTAGTCTGGACAGCGCTG 58.904 55.000 34.89 34.89 0.00 5.18
3077 3257 7.834181 TCCATTTTTAGATAAAGGAGGAACAGG 59.166 37.037 0.00 0.00 0.00 4.00
3260 3447 3.922240 GTCCGAGTCTGCATAAAAACGTA 59.078 43.478 0.00 0.00 0.00 3.57
3278 3465 6.812998 TCATAAGTTTACCCAATAGAGTCCG 58.187 40.000 0.00 0.00 0.00 4.79
3315 3543 7.361799 GGCTTCTATTTAAACCTAGTTGTGGTG 60.362 40.741 0.00 0.00 37.93 4.17
3399 3637 9.076781 TGATAGTTGAAAAACCTGAAATCATCA 57.923 29.630 0.00 0.00 36.38 3.07
3499 3739 1.603802 CTGAGACGCCTTGAGCAAAAA 59.396 47.619 0.00 0.00 44.04 1.94
3500 3740 1.202639 TCTGAGACGCCTTGAGCAAAA 60.203 47.619 0.00 0.00 44.04 2.44
3501 3741 0.392706 TCTGAGACGCCTTGAGCAAA 59.607 50.000 0.00 0.00 44.04 3.68
3605 3846 1.696063 CATGGGGAAAGCCTACATGG 58.304 55.000 0.00 0.00 41.51 3.66
3773 4014 6.929606 CGATAGATAAGGTTTCTGGGTAAAGG 59.070 42.308 0.00 0.00 39.76 3.11
3831 4072 5.172232 CGTTTATACTTCACTGATCAGCGAG 59.828 44.000 22.83 18.35 0.00 5.03
3914 4155 0.752743 GGATGGGCAGTGCAAGCATA 60.753 55.000 18.61 3.13 0.00 3.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.