Multiple sequence alignment - TraesCS2B01G345200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G345200 chr2B 100.000 4093 0 0 1 4093 492142664 492146756 0 7559
1 TraesCS2B01G345200 chr2B 96.089 716 22 6 1 714 53243328 53242617 0 1162
2 TraesCS2B01G345200 chr2B 95.921 711 26 3 1 710 654733293 654732585 0 1149
3 TraesCS2B01G345200 chr2B 95.352 710 31 2 1 710 654704374 654703667 0 1127
4 TraesCS2B01G345200 chr2D 95.052 3375 127 23 736 4093 419778737 419782088 0 5271
5 TraesCS2B01G345200 chr2A 93.743 2541 118 21 823 3346 570197778 570195262 0 3773
6 TraesCS2B01G345200 chr2A 94.980 737 27 5 3334 4066 570195233 570194503 0 1147
7 TraesCS2B01G345200 chrUn 96.213 713 24 3 2 714 23778529 23779238 0 1164
8 TraesCS2B01G345200 chrUn 95.211 710 32 2 1 710 248127705 248126998 0 1122
9 TraesCS2B01G345200 chr1B 96.197 710 24 3 1 710 612430640 612431346 0 1158
10 TraesCS2B01G345200 chr6B 95.615 707 29 2 2 708 487839894 487840598 0 1133
11 TraesCS2B01G345200 chr4B 95.615 707 27 3 2 708 628973182 628972480 0 1131
12 TraesCS2B01G345200 chr4B 95.211 710 33 1 1 710 649247276 649246568 0 1122


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G345200 chr2B 492142664 492146756 4092 False 7559 7559 100.0000 1 4093 1 chr2B.!!$F1 4092
1 TraesCS2B01G345200 chr2B 53242617 53243328 711 True 1162 1162 96.0890 1 714 1 chr2B.!!$R1 713
2 TraesCS2B01G345200 chr2B 654732585 654733293 708 True 1149 1149 95.9210 1 710 1 chr2B.!!$R3 709
3 TraesCS2B01G345200 chr2B 654703667 654704374 707 True 1127 1127 95.3520 1 710 1 chr2B.!!$R2 709
4 TraesCS2B01G345200 chr2D 419778737 419782088 3351 False 5271 5271 95.0520 736 4093 1 chr2D.!!$F1 3357
5 TraesCS2B01G345200 chr2A 570194503 570197778 3275 True 2460 3773 94.3615 823 4066 2 chr2A.!!$R1 3243
6 TraesCS2B01G345200 chrUn 23778529 23779238 709 False 1164 1164 96.2130 2 714 1 chrUn.!!$F1 712
7 TraesCS2B01G345200 chrUn 248126998 248127705 707 True 1122 1122 95.2110 1 710 1 chrUn.!!$R1 709
8 TraesCS2B01G345200 chr1B 612430640 612431346 706 False 1158 1158 96.1970 1 710 1 chr1B.!!$F1 709
9 TraesCS2B01G345200 chr6B 487839894 487840598 704 False 1133 1133 95.6150 2 708 1 chr6B.!!$F1 706
10 TraesCS2B01G345200 chr4B 628972480 628973182 702 True 1131 1131 95.6150 2 708 1 chr4B.!!$R1 706
11 TraesCS2B01G345200 chr4B 649246568 649247276 708 True 1122 1122 95.2110 1 710 1 chr4B.!!$R2 709

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
850 853 0.608035 CGGGGCTTGCTCCACTTAAA 60.608 55.0 12.41 0.0 0.00 1.52 F
2299 2312 0.035152 TCGATGGTTGCTGCAAGGAT 60.035 50.0 16.53 10.4 30.66 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2446 2459 0.538057 CAGGCTCCAAACCAGCTTCA 60.538 55.0 0.0 0.0 37.05 3.02 R
3982 4056 2.614057 CCGGAGCAATGTATTCAGGTTC 59.386 50.0 0.0 0.0 0.00 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
347 349 4.980805 GCTTGGCCGACACCGACA 62.981 66.667 0.00 0.00 38.22 4.35
509 512 2.400158 CGCTTCGGAGTCTCGGAGT 61.400 63.158 9.76 0.00 38.01 3.85
572 575 1.153823 CGTCTTTGTCGATCCGCCT 60.154 57.895 0.00 0.00 0.00 5.52
715 718 3.909430 GGAAACCCTTTTTCGTGAATCC 58.091 45.455 0.00 0.00 0.00 3.01
716 719 3.572682 GGAAACCCTTTTTCGTGAATCCT 59.427 43.478 0.00 0.00 0.00 3.24
717 720 4.763279 GGAAACCCTTTTTCGTGAATCCTA 59.237 41.667 0.00 0.00 0.00 2.94
718 721 5.106277 GGAAACCCTTTTTCGTGAATCCTAG 60.106 44.000 0.00 0.00 0.00 3.02
719 722 3.951663 ACCCTTTTTCGTGAATCCTAGG 58.048 45.455 0.82 0.82 0.00 3.02
720 723 3.329814 ACCCTTTTTCGTGAATCCTAGGT 59.670 43.478 9.08 0.00 0.00 3.08
721 724 3.939592 CCCTTTTTCGTGAATCCTAGGTC 59.060 47.826 9.08 0.00 0.00 3.85
722 725 4.323562 CCCTTTTTCGTGAATCCTAGGTCT 60.324 45.833 9.08 0.00 0.00 3.85
723 726 5.105064 CCCTTTTTCGTGAATCCTAGGTCTA 60.105 44.000 9.08 0.00 0.00 2.59
724 727 6.408206 CCCTTTTTCGTGAATCCTAGGTCTAT 60.408 42.308 9.08 0.00 0.00 1.98
725 728 7.201974 CCCTTTTTCGTGAATCCTAGGTCTATA 60.202 40.741 9.08 0.00 0.00 1.31
726 729 8.368668 CCTTTTTCGTGAATCCTAGGTCTATAT 58.631 37.037 9.08 0.00 0.00 0.86
727 730 9.413048 CTTTTTCGTGAATCCTAGGTCTATATC 57.587 37.037 9.08 0.53 0.00 1.63
728 731 7.463961 TTTCGTGAATCCTAGGTCTATATCC 57.536 40.000 9.08 0.00 0.00 2.59
729 732 6.390048 TCGTGAATCCTAGGTCTATATCCT 57.610 41.667 9.08 2.82 38.91 3.24
730 733 6.416415 TCGTGAATCCTAGGTCTATATCCTC 58.584 44.000 9.08 0.00 36.60 3.71
731 734 6.012771 TCGTGAATCCTAGGTCTATATCCTCA 60.013 42.308 9.08 0.00 36.60 3.86
732 735 6.831353 CGTGAATCCTAGGTCTATATCCTCAT 59.169 42.308 9.08 0.00 36.60 2.90
733 736 7.012894 CGTGAATCCTAGGTCTATATCCTCATC 59.987 44.444 9.08 0.00 36.60 2.92
734 737 7.836685 GTGAATCCTAGGTCTATATCCTCATCA 59.163 40.741 9.08 0.00 36.60 3.07
738 741 5.890985 CCTAGGTCTATATCCTCATCAGTGG 59.109 48.000 0.00 0.00 36.60 4.00
745 748 1.448540 CCTCATCAGTGGTGACGCC 60.449 63.158 0.68 0.00 43.65 5.68
783 786 4.951094 AGGTGTGTTTGCTTTGTACCTTTA 59.049 37.500 0.00 0.00 33.53 1.85
795 798 7.148052 TGCTTTGTACCTTTAAACTTTGCACTA 60.148 33.333 0.00 0.00 0.00 2.74
797 800 9.744468 CTTTGTACCTTTAAACTTTGCACTAAT 57.256 29.630 0.00 0.00 0.00 1.73
808 811 7.790861 AACTTTGCACTAATAATACGTTTGC 57.209 32.000 0.00 0.00 0.00 3.68
820 823 2.827604 CGTTTGCGTGGATCACTCT 58.172 52.632 0.00 0.00 31.34 3.24
821 824 1.990799 CGTTTGCGTGGATCACTCTA 58.009 50.000 0.00 0.00 31.34 2.43
822 825 2.540515 CGTTTGCGTGGATCACTCTAT 58.459 47.619 0.00 0.00 31.34 1.98
825 828 3.667448 GCGTGGATCACTCTATGCA 57.333 52.632 0.00 0.00 42.66 3.96
848 851 2.668632 CGGGGCTTGCTCCACTTA 59.331 61.111 12.41 0.00 0.00 2.24
849 852 1.002624 CGGGGCTTGCTCCACTTAA 60.003 57.895 12.41 0.00 0.00 1.85
850 853 0.608035 CGGGGCTTGCTCCACTTAAA 60.608 55.000 12.41 0.00 0.00 1.52
916 924 3.328505 TGATCGACCGTTCCCTAAAAAC 58.671 45.455 0.00 0.00 0.00 2.43
938 947 1.384989 ATTGATCGACCGAGCCGTCT 61.385 55.000 5.20 0.00 0.00 4.18
1093 1106 4.862823 CCGTCCTCCCCTCTCCCC 62.863 77.778 0.00 0.00 0.00 4.81
1258 1271 3.003173 CTCCTCCCCGCCTTCACA 61.003 66.667 0.00 0.00 0.00 3.58
1282 1295 0.637195 CCCACTTCCTCTCCCTCCTA 59.363 60.000 0.00 0.00 0.00 2.94
1404 1417 0.178876 TTCCTCTCCATGTCCCACCA 60.179 55.000 0.00 0.00 0.00 4.17
1505 1518 2.123033 GCCTCCTCCCTCTCCTCC 60.123 72.222 0.00 0.00 0.00 4.30
1691 1704 0.828022 CACTACCCCCGAAGCATACA 59.172 55.000 0.00 0.00 0.00 2.29
1777 1790 5.309323 TGCGAGATTTTGTTAGATTTGGG 57.691 39.130 0.00 0.00 0.00 4.12
1919 1932 1.899814 ACGAGCTGTACAAGGGAATGA 59.100 47.619 0.00 0.00 0.00 2.57
1935 1948 3.466836 GAATGACGCAGATGGGTATCAA 58.533 45.455 2.18 0.00 41.50 2.57
1996 2009 1.010046 TCCAGTTCAGGGAGGATGGAT 59.990 52.381 0.00 0.00 32.04 3.41
2048 2061 1.906574 AGAGAGGCGTGAAACCCAATA 59.093 47.619 0.00 0.00 30.65 1.90
2071 2084 5.916318 ACCATTGTGTTCACAACATTGATT 58.084 33.333 18.52 1.02 44.35 2.57
2125 2138 3.189606 TGGAATGGACTTGTACCAGGAT 58.810 45.455 0.00 0.00 40.89 3.24
2185 2198 1.180029 ATGCACTGTTGAATGGGCTC 58.820 50.000 0.00 0.00 0.00 4.70
2204 2217 3.259064 CTCTGTCGGGCGAGAAATTTTA 58.741 45.455 0.00 0.00 0.00 1.52
2299 2312 0.035152 TCGATGGTTGCTGCAAGGAT 60.035 50.000 16.53 10.40 30.66 3.24
2313 2326 2.928334 CAAGGATGGCAAGCTAGACAT 58.072 47.619 0.00 0.00 40.79 3.06
2316 2329 1.133976 GGATGGCAAGCTAGACATGGT 60.134 52.381 0.00 0.00 37.37 3.55
2326 2339 5.674052 AGCTAGACATGGTGATGGATATC 57.326 43.478 0.00 0.00 33.39 1.63
2340 2353 6.040166 GTGATGGATATCAAGCAGAAAATGGT 59.960 38.462 0.00 0.00 44.49 3.55
2345 2358 2.942804 TCAAGCAGAAAATGGTGGACA 58.057 42.857 0.00 0.00 40.26 4.02
2446 2459 3.848975 AGAGGGTCCTTGTTGAGATGATT 59.151 43.478 0.00 0.00 0.00 2.57
2482 2495 1.405461 CTGACAACACGACCTACACG 58.595 55.000 0.00 0.00 0.00 4.49
2645 2658 0.248377 GAATGCCGACATGCTTCTGC 60.248 55.000 0.00 0.00 36.36 4.26
2720 2733 0.752743 GGATGGGCAGTGCAAGCATA 60.753 55.000 18.61 3.13 0.00 3.14
2803 2816 5.172232 CGTTTATACTTCACTGATCAGCGAG 59.828 44.000 22.83 18.35 0.00 5.03
2861 2874 6.929606 CGATAGATAAGGTTTCTGGGTAAAGG 59.070 42.308 0.00 0.00 39.76 3.11
3029 3042 1.696063 CATGGGGAAAGCCTACATGG 58.304 55.000 0.00 0.00 41.51 3.66
3133 3146 0.392706 TCTGAGACGCCTTGAGCAAA 59.607 50.000 0.00 0.00 44.04 3.68
3134 3147 1.202639 TCTGAGACGCCTTGAGCAAAA 60.203 47.619 0.00 0.00 44.04 2.44
3135 3148 1.603802 CTGAGACGCCTTGAGCAAAAA 59.396 47.619 0.00 0.00 44.04 1.94
3235 3251 9.076781 TGATAGTTGAAAAACCTGAAATCATCA 57.923 29.630 0.00 0.00 36.38 3.07
3319 3345 7.361799 GGCTTCTATTTAAACCTAGTTGTGGTG 60.362 40.741 0.00 0.00 37.93 4.17
3356 3423 6.812998 TCATAAGTTTACCCAATAGAGTCCG 58.187 40.000 0.00 0.00 0.00 4.79
3374 3441 3.922240 GTCCGAGTCTGCATAAAAACGTA 59.078 43.478 0.00 0.00 0.00 3.57
3557 3631 7.834181 TCCATTTTTAGATAAAGGAGGAACAGG 59.166 37.037 0.00 0.00 0.00 4.00
3766 3840 1.095600 TAGTAGTCTGGACAGCGCTG 58.904 55.000 34.89 34.89 0.00 5.18
3982 4056 0.873743 GCTTCTCCAATCCGAGCTCG 60.874 60.000 29.06 29.06 39.44 5.03
3999 4073 2.939103 GCTCGAACCTGAATACATTGCT 59.061 45.455 0.00 0.00 0.00 3.91
4013 4087 4.546829 ACATTGCTCCGGTTAGTAAAGA 57.453 40.909 0.00 0.00 0.00 2.52
4054 4128 7.696035 CACGCAATATGCTCTTGTTAATTGTTA 59.304 33.333 0.43 0.00 42.25 2.41
4066 4140 6.820470 TGTTAATTGTTACAGTTGCTTTGC 57.180 33.333 3.33 0.00 0.00 3.68
4088 4162 7.151999 TGCTTTCTTTACAGTTCTTTGTCAA 57.848 32.000 0.00 0.00 32.56 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
139 140 1.227380 CGTCAGCATACTGGAGGGC 60.227 63.158 0.00 0.00 44.59 5.19
509 512 1.196104 ACCGAAGATCGTCCCCCAAA 61.196 55.000 2.90 0.00 38.40 3.28
572 575 9.487790 AAAAGAAAAGAAATGAATGCCGATAAA 57.512 25.926 0.00 0.00 0.00 1.40
710 713 8.058847 ACTGATGAGGATATAGACCTAGGATTC 58.941 40.741 17.98 3.07 37.93 2.52
714 717 5.890985 CCACTGATGAGGATATAGACCTAGG 59.109 48.000 7.41 7.41 37.93 3.02
715 718 6.376864 CACCACTGATGAGGATATAGACCTAG 59.623 46.154 1.88 0.00 37.93 3.02
716 719 6.045577 TCACCACTGATGAGGATATAGACCTA 59.954 42.308 1.88 0.00 37.93 3.08
717 720 5.083122 CACCACTGATGAGGATATAGACCT 58.917 45.833 1.52 1.52 40.80 3.85
718 721 5.047660 GTCACCACTGATGAGGATATAGACC 60.048 48.000 0.00 0.00 0.00 3.85
719 722 5.335269 CGTCACCACTGATGAGGATATAGAC 60.335 48.000 0.00 0.00 35.65 2.59
720 723 4.762251 CGTCACCACTGATGAGGATATAGA 59.238 45.833 0.00 0.00 35.65 1.98
721 724 4.617067 GCGTCACCACTGATGAGGATATAG 60.617 50.000 0.00 0.00 35.65 1.31
722 725 3.255888 GCGTCACCACTGATGAGGATATA 59.744 47.826 0.00 0.00 35.65 0.86
723 726 2.036475 GCGTCACCACTGATGAGGATAT 59.964 50.000 0.00 0.00 35.65 1.63
724 727 1.409064 GCGTCACCACTGATGAGGATA 59.591 52.381 0.00 0.00 35.65 2.59
725 728 0.176680 GCGTCACCACTGATGAGGAT 59.823 55.000 0.00 0.00 35.65 3.24
726 729 1.591703 GCGTCACCACTGATGAGGA 59.408 57.895 0.00 0.00 35.65 3.71
727 730 1.448540 GGCGTCACCACTGATGAGG 60.449 63.158 0.00 0.00 35.65 3.86
728 731 0.738762 CTGGCGTCACCACTGATGAG 60.739 60.000 0.00 0.00 46.36 2.90
729 732 1.293179 CTGGCGTCACCACTGATGA 59.707 57.895 0.00 0.00 46.36 2.92
730 733 1.742880 CCTGGCGTCACCACTGATG 60.743 63.158 0.00 0.00 46.36 3.07
731 734 0.902984 TACCTGGCGTCACCACTGAT 60.903 55.000 0.00 0.00 46.36 2.90
732 735 0.902984 ATACCTGGCGTCACCACTGA 60.903 55.000 0.00 0.00 46.36 3.41
733 736 0.036388 AATACCTGGCGTCACCACTG 60.036 55.000 0.00 0.00 46.36 3.66
734 737 0.249398 GAATACCTGGCGTCACCACT 59.751 55.000 0.00 0.00 46.36 4.00
738 741 2.171725 GCCGAATACCTGGCGTCAC 61.172 63.158 0.00 0.00 42.22 3.67
745 748 1.066143 ACACCTGAAGCCGAATACCTG 60.066 52.381 0.00 0.00 0.00 4.00
783 786 7.060174 CGCAAACGTATTATTAGTGCAAAGTTT 59.940 33.333 0.00 0.00 33.53 2.66
804 807 2.279741 GCATAGAGTGATCCACGCAAA 58.720 47.619 3.88 0.00 39.64 3.68
808 811 3.010624 CTCTGCATAGAGTGATCCACG 57.989 52.381 0.00 0.00 44.43 4.94
818 821 2.844362 CCCCGGCCTCTGCATAGA 60.844 66.667 0.00 0.00 40.13 1.98
819 822 4.632974 GCCCCGGCCTCTGCATAG 62.633 72.222 0.00 0.00 40.13 2.23
870 878 8.454106 CAATCTTTACAAGGTCATCTTTACTGG 58.546 37.037 0.00 0.00 32.41 4.00
875 883 7.824289 TCGATCAATCTTTACAAGGTCATCTTT 59.176 33.333 0.00 0.00 32.41 2.52
887 895 3.554731 GGGAACGGTCGATCAATCTTTAC 59.445 47.826 0.00 0.00 0.00 2.01
916 924 0.936764 CGGCTCGGTCGATCAATCTG 60.937 60.000 0.00 0.00 29.41 2.90
938 947 1.533625 CCCGCCAAGTTGAAAGATGA 58.466 50.000 3.87 0.00 0.00 2.92
979 991 0.335019 TGGGGACGGAGAGAATGAGA 59.665 55.000 0.00 0.00 0.00 3.27
1046 1059 2.905996 TTTCAGTGGGCGGCTGGAT 61.906 57.895 9.56 0.00 34.89 3.41
1054 1067 3.670377 GGCGGTGTTTCAGTGGGC 61.670 66.667 0.00 0.00 0.00 5.36
1240 1253 3.003763 GTGAAGGCGGGGAGGAGT 61.004 66.667 0.00 0.00 0.00 3.85
1258 1271 2.066999 GGAGAGGAAGTGGGCGGAT 61.067 63.158 0.00 0.00 0.00 4.18
1282 1295 3.003763 GAGAGGGGGTTGGAGCGT 61.004 66.667 0.00 0.00 0.00 5.07
1486 1499 3.351885 AGGAGAGGGAGGAGGCGT 61.352 66.667 0.00 0.00 0.00 5.68
1691 1704 0.689623 AGCAGCTGCAGGTAGAAAGT 59.310 50.000 38.24 12.75 45.16 2.66
1792 1805 1.000884 TTTCGTCGAACACTTTGCGT 58.999 45.000 7.29 0.00 0.00 5.24
1798 1811 1.493772 TTCGCATTTCGTCGAACACT 58.506 45.000 7.29 0.00 39.43 3.55
1919 1932 2.038387 GGTTTGATACCCATCTGCGT 57.962 50.000 0.00 0.00 41.43 5.24
1996 2009 4.038883 TCACCAAACATCATTGTTGCATCA 59.961 37.500 0.00 0.00 45.30 3.07
2125 2138 0.548926 TCACACCCCTTGCCCTCATA 60.549 55.000 0.00 0.00 0.00 2.15
2185 2198 3.181510 CCTTAAAATTTCTCGCCCGACAG 60.182 47.826 0.00 0.00 0.00 3.51
2299 2312 0.983467 TCACCATGTCTAGCTTGCCA 59.017 50.000 0.00 0.00 0.00 4.92
2313 2326 4.776435 TTCTGCTTGATATCCATCACCA 57.224 40.909 0.00 0.00 40.94 4.17
2316 2329 6.040054 CACCATTTTCTGCTTGATATCCATCA 59.960 38.462 0.00 0.00 39.47 3.07
2326 2339 3.731652 TTGTCCACCATTTTCTGCTTG 57.268 42.857 0.00 0.00 0.00 4.01
2340 2353 1.021202 CAACGCAACCTCTTTGTCCA 58.979 50.000 0.00 0.00 37.54 4.02
2345 2358 2.154462 CTCATCCAACGCAACCTCTTT 58.846 47.619 0.00 0.00 0.00 2.52
2446 2459 0.538057 CAGGCTCCAAACCAGCTTCA 60.538 55.000 0.00 0.00 37.05 3.02
2482 2495 1.667724 CAGAAGGCGTCAATCACCATC 59.332 52.381 2.69 0.00 0.00 3.51
2645 2658 4.082408 CACCCCTATATTGAGCATTGCATG 60.082 45.833 11.91 0.00 0.00 4.06
2720 2733 7.387397 CAGCTCTTCAGAATCAGTAACTTTTCT 59.613 37.037 0.00 0.00 0.00 2.52
2803 2816 2.287849 GGCTGGTTTCTTCTTGACAAGC 60.288 50.000 10.50 0.00 0.00 4.01
2990 3003 2.286831 TGCTACGCTGCGAAGTAGTATC 60.287 50.000 30.47 5.56 43.91 2.24
2991 3004 1.674441 TGCTACGCTGCGAAGTAGTAT 59.326 47.619 30.47 5.86 43.91 2.12
2992 3005 1.089112 TGCTACGCTGCGAAGTAGTA 58.911 50.000 30.47 16.14 43.91 1.82
2993 3006 0.456221 ATGCTACGCTGCGAAGTAGT 59.544 50.000 30.47 7.50 43.91 2.73
3029 3042 9.758651 AAATTACAAAACCAAAAGACCATCTAC 57.241 29.630 0.00 0.00 0.00 2.59
3079 3092 6.427853 TCAAGTAAACATCTGTCACCATCTTG 59.572 38.462 0.00 0.00 0.00 3.02
3347 3414 5.854010 TTTTATGCAGACTCGGACTCTAT 57.146 39.130 0.00 0.00 0.00 1.98
3348 3415 5.408356 GTTTTTATGCAGACTCGGACTCTA 58.592 41.667 0.00 0.00 0.00 2.43
3374 3441 6.263842 CCAACATAACTGACCATATCAAGCAT 59.736 38.462 0.00 0.00 36.69 3.79
3557 3631 2.625737 TCAGTTGCAGATGAAGCTAGC 58.374 47.619 6.62 6.62 0.00 3.42
3730 3804 4.881850 ACTACTATTATTGGTGCTGTTGCC 59.118 41.667 0.00 0.00 38.71 4.52
3982 4056 2.614057 CCGGAGCAATGTATTCAGGTTC 59.386 50.000 0.00 0.00 0.00 3.62
3999 4073 4.879545 GGCATGATTTCTTTACTAACCGGA 59.120 41.667 9.46 0.00 0.00 5.14
4013 4087 2.642427 TGCGTGTGATAGGCATGATTT 58.358 42.857 0.00 0.00 44.54 2.17
4054 4128 5.105756 ACTGTAAAGAAAGCAAAGCAACTGT 60.106 36.000 0.00 0.00 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.