Multiple sequence alignment - TraesCS2B01G345100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G345100 chr2B 100.000 2876 0 0 1 2876 492087025 492089900 0.000000e+00 5312.0
1 TraesCS2B01G345100 chr2B 90.724 981 62 8 830 1803 491961712 491962670 0.000000e+00 1280.0
2 TraesCS2B01G345100 chr2B 94.262 122 6 1 2750 2871 744189871 744189991 4.890000e-43 185.0
3 TraesCS2B01G345100 chr2B 93.496 123 8 0 2748 2870 723434227 723434349 1.760000e-42 183.0
4 TraesCS2B01G345100 chr2B 93.421 76 4 1 676 751 491961391 491961465 8.420000e-21 111.0
5 TraesCS2B01G345100 chr2D 94.683 2351 97 12 414 2748 419673186 419675524 0.000000e+00 3624.0
6 TraesCS2B01G345100 chr2D 90.443 994 75 5 810 1803 419479732 419480705 0.000000e+00 1291.0
7 TraesCS2B01G345100 chr2D 83.871 310 30 11 30 320 419672714 419673022 7.850000e-71 278.0
8 TraesCS2B01G345100 chr2D 86.420 81 9 2 322 400 419673048 419673128 1.420000e-13 87.9
9 TraesCS2B01G345100 chr2A 94.399 2089 84 10 521 2594 570269095 570267025 0.000000e+00 3179.0
10 TraesCS2B01G345100 chr2A 92.089 986 74 3 820 1803 570502713 570501730 0.000000e+00 1386.0
11 TraesCS2B01G345100 chr2A 97.191 178 5 0 2574 2751 570266858 570266681 4.660000e-78 302.0
12 TraesCS2B01G345100 chr4B 95.238 126 6 0 2751 2876 165306628 165306503 1.750000e-47 200.0
13 TraesCS2B01G345100 chr5B 95.833 120 5 0 2750 2869 577240550 577240431 8.130000e-46 195.0
14 TraesCS2B01G345100 chr4A 95.798 119 5 0 2753 2871 544199438 544199320 2.920000e-45 193.0
15 TraesCS2B01G345100 chr4A 92.857 42 3 0 1 42 578893709 578893750 8.600000e-06 62.1
16 TraesCS2B01G345100 chr6A 94.400 125 6 1 2749 2873 14481060 14480937 1.050000e-44 191.0
17 TraesCS2B01G345100 chr6A 97.297 37 1 0 1 37 529424396 529424360 2.390000e-06 63.9
18 TraesCS2B01G345100 chr3B 94.262 122 7 0 2750 2871 725714309 725714430 1.360000e-43 187.0
19 TraesCS2B01G345100 chr3B 92.248 129 8 2 2746 2874 380680185 380680311 6.330000e-42 182.0
20 TraesCS2B01G345100 chr3B 95.000 40 2 0 1 40 412052710 412052749 2.390000e-06 63.9
21 TraesCS2B01G345100 chr3B 88.235 51 3 3 1 48 828576695 828576745 1.110000e-04 58.4
22 TraesCS2B01G345100 chr1B 93.548 124 8 0 2750 2873 623828242 623828365 4.890000e-43 185.0
23 TraesCS2B01G345100 chr1B 87.500 64 7 1 158 220 140105009 140104946 3.970000e-09 73.1
24 TraesCS2B01G345100 chr1B 100.000 35 0 0 1 35 597424195 597424229 6.650000e-07 65.8
25 TraesCS2B01G345100 chr5D 85.263 95 9 4 156 249 406171120 406171210 3.050000e-15 93.5
26 TraesCS2B01G345100 chr7B 95.652 46 2 0 158 203 393541121 393541076 1.110000e-09 75.0
27 TraesCS2B01G345100 chr7B 95.000 40 2 0 1 40 223650335 223650374 2.390000e-06 63.9
28 TraesCS2B01G345100 chr6B 87.500 64 7 1 158 220 184892984 184893047 3.970000e-09 73.1
29 TraesCS2B01G345100 chr7D 93.478 46 3 0 158 203 426216010 426215965 5.140000e-08 69.4
30 TraesCS2B01G345100 chr1D 93.478 46 3 0 158 203 440423275 440423320 5.140000e-08 69.4
31 TraesCS2B01G345100 chr7A 100.000 36 0 0 1 36 535979616 535979581 1.850000e-07 67.6
32 TraesCS2B01G345100 chrUn 100.000 35 0 0 1 35 322624328 322624294 6.650000e-07 65.8
33 TraesCS2B01G345100 chrUn 90.909 44 3 1 990 1033 33171789 33171747 1.110000e-04 58.4
34 TraesCS2B01G345100 chr5A 100.000 33 0 0 1 33 482505166 482505198 8.600000e-06 62.1
35 TraesCS2B01G345100 chr1A 97.059 34 0 1 180 213 577767282 577767250 4.000000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G345100 chr2B 492087025 492089900 2875 False 5312.000000 5312 100.000000 1 2876 1 chr2B.!!$F1 2875
1 TraesCS2B01G345100 chr2B 491961391 491962670 1279 False 695.500000 1280 92.072500 676 1803 2 chr2B.!!$F4 1127
2 TraesCS2B01G345100 chr2D 419672714 419675524 2810 False 1329.966667 3624 88.324667 30 2748 3 chr2D.!!$F2 2718
3 TraesCS2B01G345100 chr2D 419479732 419480705 973 False 1291.000000 1291 90.443000 810 1803 1 chr2D.!!$F1 993
4 TraesCS2B01G345100 chr2A 570266681 570269095 2414 True 1740.500000 3179 95.795000 521 2751 2 chr2A.!!$R2 2230
5 TraesCS2B01G345100 chr2A 570501730 570502713 983 True 1386.000000 1386 92.089000 820 1803 1 chr2A.!!$R1 983

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
983 1278 0.179089 CTGAATCGGAGCAGGACTGG 60.179 60.0 1.01 0.0 0.0 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2753 3263 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.0 13.64 0.0 46.06 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.819267 AAATTTTTGAAATTACTACGAAACCCA 57.181 25.926 0.00 0.00 0.00 4.51
27 28 9.819267 AATTTTTGAAATTACTACGAAACCCAA 57.181 25.926 0.00 0.00 0.00 4.12
28 29 8.631676 TTTTTGAAATTACTACGAAACCCAAC 57.368 30.769 0.00 0.00 0.00 3.77
33 34 7.228906 TGAAATTACTACGAAACCCAACAATGA 59.771 33.333 0.00 0.00 0.00 2.57
39 40 2.031157 CGAAACCCAACAATGACCACTC 60.031 50.000 0.00 0.00 0.00 3.51
105 106 7.335627 ACCTTTCAAATACGTGGATGATTCTA 58.664 34.615 0.00 0.00 0.00 2.10
106 107 7.495934 ACCTTTCAAATACGTGGATGATTCTAG 59.504 37.037 0.00 0.00 0.00 2.43
107 108 7.710907 CCTTTCAAATACGTGGATGATTCTAGA 59.289 37.037 0.00 0.00 0.00 2.43
108 109 9.098355 CTTTCAAATACGTGGATGATTCTAGAA 57.902 33.333 7.82 7.82 0.00 2.10
111 112 8.879759 TCAAATACGTGGATGATTCTAGAAAAC 58.120 33.333 9.71 7.59 0.00 2.43
120 121 9.513906 TGGATGATTCTAGAAAACAACAATACA 57.486 29.630 9.71 2.86 0.00 2.29
126 127 7.667043 TCTAGAAAACAACAATACATTCGCT 57.333 32.000 0.00 0.00 0.00 4.93
127 128 7.739295 TCTAGAAAACAACAATACATTCGCTC 58.261 34.615 0.00 0.00 0.00 5.03
129 130 7.667043 AGAAAACAACAATACATTCGCTCTA 57.333 32.000 0.00 0.00 0.00 2.43
135 136 6.701841 ACAACAATACATTCGCTCTACCATAG 59.298 38.462 0.00 0.00 0.00 2.23
136 137 5.230942 ACAATACATTCGCTCTACCATAGC 58.769 41.667 0.00 0.00 36.60 2.97
138 139 3.377346 ACATTCGCTCTACCATAGCAG 57.623 47.619 0.00 0.00 40.08 4.24
139 140 2.036475 ACATTCGCTCTACCATAGCAGG 59.964 50.000 0.00 0.00 40.08 4.85
140 141 0.389391 TTCGCTCTACCATAGCAGGC 59.611 55.000 0.00 0.00 40.08 4.85
141 142 0.755327 TCGCTCTACCATAGCAGGCA 60.755 55.000 0.00 0.00 40.08 4.75
142 143 0.598680 CGCTCTACCATAGCAGGCAC 60.599 60.000 0.00 0.00 40.08 5.01
143 144 0.465705 GCTCTACCATAGCAGGCACA 59.534 55.000 0.00 0.00 39.83 4.57
144 145 1.071385 GCTCTACCATAGCAGGCACAT 59.929 52.381 0.00 0.00 39.83 3.21
145 146 2.486191 GCTCTACCATAGCAGGCACATT 60.486 50.000 0.00 0.00 39.83 2.71
146 147 3.397482 CTCTACCATAGCAGGCACATTC 58.603 50.000 0.00 0.00 0.00 2.67
154 167 0.242017 GCAGGCACATTCAGTTGGTC 59.758 55.000 0.00 0.00 0.00 4.02
175 188 3.753272 TCGAGCCAAGAATTTTCTCCTTG 59.247 43.478 0.00 0.00 36.28 3.61
275 297 9.703892 TTATTTGATATTTTATTGAATGCCCCG 57.296 29.630 0.00 0.00 0.00 5.73
281 303 2.258748 TATTGAATGCCCCGGCGTCA 62.259 55.000 6.01 4.41 45.51 4.35
351 397 9.856488 ATTGATTCTTGATTTTGAGATTCACAG 57.144 29.630 0.00 0.00 34.10 3.66
352 398 7.823665 TGATTCTTGATTTTGAGATTCACAGG 58.176 34.615 0.00 0.00 31.19 4.00
367 413 9.708092 GAGATTCACAGGTTTAAACTACTACTT 57.292 33.333 17.50 0.00 0.00 2.24
373 419 7.540055 CACAGGTTTAAACTACTACTTAGTCCG 59.460 40.741 17.50 0.00 40.44 4.79
376 422 7.030165 GGTTTAAACTACTACTTAGTCCGTCC 58.970 42.308 17.50 0.00 40.44 4.79
377 423 6.759497 TTAAACTACTACTTAGTCCGTCCC 57.241 41.667 0.00 0.00 40.44 4.46
387 433 6.158023 ACTTAGTCCGTCCCATAATGTAAG 57.842 41.667 0.00 0.00 0.00 2.34
388 434 5.895534 ACTTAGTCCGTCCCATAATGTAAGA 59.104 40.000 0.00 0.00 0.00 2.10
389 435 4.667519 AGTCCGTCCCATAATGTAAGAC 57.332 45.455 0.00 0.00 0.00 3.01
390 436 4.287552 AGTCCGTCCCATAATGTAAGACT 58.712 43.478 0.00 0.00 0.00 3.24
391 437 4.715297 AGTCCGTCCCATAATGTAAGACTT 59.285 41.667 0.00 0.00 0.00 3.01
393 439 5.293569 GTCCGTCCCATAATGTAAGACTTTG 59.706 44.000 0.00 0.00 0.00 2.77
396 442 6.819649 CCGTCCCATAATGTAAGACTTTGTTA 59.180 38.462 0.00 0.00 0.00 2.41
397 443 7.334921 CCGTCCCATAATGTAAGACTTTGTTAA 59.665 37.037 0.00 0.00 0.00 2.01
398 444 8.173130 CGTCCCATAATGTAAGACTTTGTTAAC 58.827 37.037 0.00 0.00 0.00 2.01
400 446 9.747898 TCCCATAATGTAAGACTTTGTTAACAT 57.252 29.630 9.56 0.00 0.00 2.71
409 455 9.537848 GTAAGACTTTGTTAACATTATGGAACG 57.462 33.333 9.56 0.00 0.00 3.95
410 456 7.141100 AGACTTTGTTAACATTATGGAACGG 57.859 36.000 9.56 0.00 0.00 4.44
411 457 6.938030 AGACTTTGTTAACATTATGGAACGGA 59.062 34.615 9.56 0.00 0.00 4.69
475 573 0.625980 TAACCCCATGCTCCCATCCA 60.626 55.000 0.00 0.00 0.00 3.41
478 576 1.540166 CCCATGCTCCCATCCACAT 59.460 57.895 0.00 0.00 0.00 3.21
500 598 0.316689 CCGCTCGTTCAAAACACACC 60.317 55.000 0.00 0.00 0.00 4.16
506 604 1.104630 GTTCAAAACACACCCCCGAA 58.895 50.000 0.00 0.00 0.00 4.30
526 624 4.615961 CGAACTCGAACTCGTCTAAAACAT 59.384 41.667 7.47 0.00 43.02 2.71
534 632 3.007182 ACTCGTCTAAAACATTCCCGGAA 59.993 43.478 0.73 1.31 0.00 4.30
552 650 4.381292 CCGGAACTAGTACACCTAAACCAG 60.381 50.000 0.00 0.00 0.00 4.00
626 725 0.464373 CCCACCTGTCATCGAATGGG 60.464 60.000 0.00 0.00 40.87 4.00
667 766 2.173519 CCCTCAAAGTGGTACCGACTA 58.826 52.381 14.80 2.67 0.00 2.59
668 767 2.094338 CCCTCAAAGTGGTACCGACTAC 60.094 54.545 14.80 4.94 37.32 2.73
669 768 2.415090 CCTCAAAGTGGTACCGACTACG 60.415 54.545 14.80 10.32 41.71 3.51
670 769 2.485426 CTCAAAGTGGTACCGACTACGA 59.515 50.000 14.80 13.00 41.71 3.43
671 770 2.226437 TCAAAGTGGTACCGACTACGAC 59.774 50.000 14.80 3.28 41.71 4.34
672 771 2.191128 AAGTGGTACCGACTACGACT 57.809 50.000 14.80 5.40 44.06 4.18
808 1030 2.769095 CCGAAGAAATCTCCCTTCCTCT 59.231 50.000 0.00 0.00 36.36 3.69
894 1173 1.151450 CATCTCCCCCAAATCCCCG 59.849 63.158 0.00 0.00 0.00 5.73
983 1278 0.179089 CTGAATCGGAGCAGGACTGG 60.179 60.000 1.01 0.00 0.00 4.00
984 1279 0.904865 TGAATCGGAGCAGGACTGGT 60.905 55.000 3.35 3.35 44.89 4.00
1240 1550 0.172803 GCTCGTCGTAATGTCCCTGT 59.827 55.000 0.00 0.00 0.00 4.00
1357 1667 4.357947 GAGGCGTCGTCTGCACCA 62.358 66.667 2.89 0.00 0.00 4.17
1443 1753 4.079850 CGGTCTGGCAGCTGCTCT 62.080 66.667 35.82 0.00 41.70 4.09
1689 1999 1.667830 CCTGCGAAACGAGAAGGCA 60.668 57.895 0.00 0.00 0.00 4.75
1750 2060 1.546029 AGCAGAAGCAGATGTACGACA 59.454 47.619 0.00 0.00 45.49 4.35
1761 2071 0.973632 TGTACGACAGGCAGGTGATT 59.026 50.000 0.00 0.00 0.00 2.57
1764 2074 0.615331 ACGACAGGCAGGTGATTGAT 59.385 50.000 0.00 0.00 0.00 2.57
1818 2128 1.627297 AATCCGGGGAGCCAGAGTTC 61.627 60.000 0.00 0.00 0.00 3.01
1842 2152 2.505118 GAGCGAGCCGTGTCAGAC 60.505 66.667 0.00 0.00 0.00 3.51
2171 2483 0.107165 GCTATCTGCGGGACCCTTTT 60.107 55.000 9.41 0.00 0.00 2.27
2206 2518 3.679502 TGTGAACTCAATAGATGTGCGTG 59.320 43.478 0.00 0.00 0.00 5.34
2227 2540 5.580691 CGTGCTAGTCTTTTGGACATGATAA 59.419 40.000 0.00 0.00 46.72 1.75
2518 2841 2.169352 AGTCTTGCATACTAGGGCACTG 59.831 50.000 0.00 0.00 40.23 3.66
2519 2842 2.093447 GTCTTGCATACTAGGGCACTGT 60.093 50.000 0.00 0.00 40.23 3.55
2536 2859 4.378459 GCACTGTATTACTTCACTGGTTGC 60.378 45.833 0.00 0.00 0.00 4.17
2539 2862 6.649141 CACTGTATTACTTCACTGGTTGCTAA 59.351 38.462 0.00 0.00 0.00 3.09
2547 2870 3.521560 TCACTGGTTGCTAAGCTATTCG 58.478 45.455 0.00 0.00 0.00 3.34
2759 3269 7.475137 AGCAAATCTCATAGATAGTACTCCC 57.525 40.000 0.00 0.00 32.89 4.30
2760 3270 7.245292 AGCAAATCTCATAGATAGTACTCCCT 58.755 38.462 0.00 0.00 32.89 4.20
2761 3271 7.396055 AGCAAATCTCATAGATAGTACTCCCTC 59.604 40.741 0.00 0.00 32.89 4.30
2762 3272 7.363443 GCAAATCTCATAGATAGTACTCCCTCC 60.363 44.444 0.00 0.00 32.89 4.30
2763 3273 5.423704 TCTCATAGATAGTACTCCCTCCG 57.576 47.826 0.00 0.00 0.00 4.63
2764 3274 4.845225 TCTCATAGATAGTACTCCCTCCGT 59.155 45.833 0.00 0.00 0.00 4.69
2765 3275 5.046448 TCTCATAGATAGTACTCCCTCCGTC 60.046 48.000 0.00 0.00 0.00 4.79
2766 3276 2.955342 AGATAGTACTCCCTCCGTCC 57.045 55.000 0.00 0.00 0.00 4.79
2767 3277 1.072015 AGATAGTACTCCCTCCGTCCG 59.928 57.143 0.00 0.00 0.00 4.79
2768 3278 0.110104 ATAGTACTCCCTCCGTCCGG 59.890 60.000 0.00 0.00 0.00 5.14
2769 3279 0.982852 TAGTACTCCCTCCGTCCGGA 60.983 60.000 0.00 0.00 42.90 5.14
2770 3280 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
2771 3281 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
2772 3282 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
2773 3283 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
2774 3284 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
2775 3285 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2776 3286 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
2777 3287 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
2778 3288 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
2779 3289 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2780 3290 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
2781 3291 1.274596 CGTCCGGAAATACTTGTCGG 58.725 55.000 5.23 0.00 41.80 4.79
2782 3292 1.135315 CGTCCGGAAATACTTGTCGGA 60.135 52.381 5.23 0.00 46.06 4.55
2783 3293 2.953466 TCCGGAAATACTTGTCGGAG 57.047 50.000 0.00 0.00 43.84 4.63
2784 3294 1.479323 TCCGGAAATACTTGTCGGAGG 59.521 52.381 0.00 0.00 43.84 4.30
2785 3295 1.479323 CCGGAAATACTTGTCGGAGGA 59.521 52.381 0.00 0.00 42.94 3.71
2786 3296 2.093869 CCGGAAATACTTGTCGGAGGAA 60.094 50.000 0.00 0.00 42.94 3.36
2787 3297 3.431766 CCGGAAATACTTGTCGGAGGAAT 60.432 47.826 0.00 0.00 42.94 3.01
2788 3298 3.555956 CGGAAATACTTGTCGGAGGAATG 59.444 47.826 0.00 0.00 0.00 2.67
2789 3299 4.679639 CGGAAATACTTGTCGGAGGAATGA 60.680 45.833 0.00 0.00 0.00 2.57
2790 3300 5.183228 GGAAATACTTGTCGGAGGAATGAA 58.817 41.667 0.00 0.00 0.00 2.57
2791 3301 5.823045 GGAAATACTTGTCGGAGGAATGAAT 59.177 40.000 0.00 0.00 0.00 2.57
2792 3302 6.990349 GGAAATACTTGTCGGAGGAATGAATA 59.010 38.462 0.00 0.00 0.00 1.75
2793 3303 7.661847 GGAAATACTTGTCGGAGGAATGAATAT 59.338 37.037 0.00 0.00 0.00 1.28
2794 3304 9.706691 GAAATACTTGTCGGAGGAATGAATATA 57.293 33.333 0.00 0.00 0.00 0.86
2796 3306 9.877178 AATACTTGTCGGAGGAATGAATATATC 57.123 33.333 0.00 0.00 0.00 1.63
2797 3307 7.546250 ACTTGTCGGAGGAATGAATATATCT 57.454 36.000 0.00 0.00 0.00 1.98
2798 3308 8.651589 ACTTGTCGGAGGAATGAATATATCTA 57.348 34.615 0.00 0.00 0.00 1.98
2799 3309 8.744652 ACTTGTCGGAGGAATGAATATATCTAG 58.255 37.037 0.00 0.00 0.00 2.43
2800 3310 8.879427 TTGTCGGAGGAATGAATATATCTAGA 57.121 34.615 0.00 0.00 0.00 2.43
2801 3311 8.282455 TGTCGGAGGAATGAATATATCTAGAC 57.718 38.462 0.00 0.00 0.00 2.59
2802 3312 7.065923 TGTCGGAGGAATGAATATATCTAGACG 59.934 40.741 0.00 0.00 0.00 4.18
2803 3313 7.066043 GTCGGAGGAATGAATATATCTAGACGT 59.934 40.741 0.00 0.00 0.00 4.34
2804 3314 8.262933 TCGGAGGAATGAATATATCTAGACGTA 58.737 37.037 0.00 0.00 0.00 3.57
2805 3315 9.058174 CGGAGGAATGAATATATCTAGACGTAT 57.942 37.037 0.00 0.00 0.00 3.06
2843 3353 7.760131 ACATCCATTTTTATGCATTTCTTCG 57.240 32.000 3.54 0.00 0.00 3.79
2844 3354 7.546358 ACATCCATTTTTATGCATTTCTTCGA 58.454 30.769 3.54 0.00 0.00 3.71
2845 3355 7.489113 ACATCCATTTTTATGCATTTCTTCGAC 59.511 33.333 3.54 0.00 0.00 4.20
2846 3356 6.918626 TCCATTTTTATGCATTTCTTCGACA 58.081 32.000 3.54 0.00 0.00 4.35
2847 3357 7.374272 TCCATTTTTATGCATTTCTTCGACAA 58.626 30.769 3.54 0.00 0.00 3.18
2848 3358 7.541783 TCCATTTTTATGCATTTCTTCGACAAG 59.458 33.333 3.54 0.00 0.00 3.16
2849 3359 7.329226 CCATTTTTATGCATTTCTTCGACAAGT 59.671 33.333 3.54 0.00 0.00 3.16
2850 3360 9.340695 CATTTTTATGCATTTCTTCGACAAGTA 57.659 29.630 3.54 0.00 0.00 2.24
2852 3362 9.906660 TTTTTATGCATTTCTTCGACAAGTATT 57.093 25.926 3.54 0.00 0.00 1.89
2853 3363 9.906660 TTTTATGCATTTCTTCGACAAGTATTT 57.093 25.926 3.54 0.00 0.00 1.40
2854 3364 9.906660 TTTATGCATTTCTTCGACAAGTATTTT 57.093 25.926 3.54 0.00 0.00 1.82
2855 3365 9.554724 TTATGCATTTCTTCGACAAGTATTTTC 57.445 29.630 3.54 0.00 0.00 2.29
2856 3366 6.077197 TGCATTTCTTCGACAAGTATTTTCG 58.923 36.000 0.00 0.00 0.00 3.46
2857 3367 6.073494 TGCATTTCTTCGACAAGTATTTTCGA 60.073 34.615 0.00 0.00 39.91 3.71
2858 3368 6.795114 GCATTTCTTCGACAAGTATTTTCGAA 59.205 34.615 11.58 11.58 46.55 3.71
2859 3369 7.201157 GCATTTCTTCGACAAGTATTTTCGAAC 60.201 37.037 8.86 0.00 44.54 3.95
2860 3370 5.490472 TCTTCGACAAGTATTTTCGAACG 57.510 39.130 8.86 0.00 44.54 3.95
2861 3371 4.383649 TCTTCGACAAGTATTTTCGAACGG 59.616 41.667 8.86 2.81 44.54 4.44
2862 3372 3.899734 TCGACAAGTATTTTCGAACGGA 58.100 40.909 0.00 0.00 38.77 4.69
2863 3373 3.916172 TCGACAAGTATTTTCGAACGGAG 59.084 43.478 0.00 0.00 38.77 4.63
2864 3374 3.060363 CGACAAGTATTTTCGAACGGAGG 59.940 47.826 0.00 0.00 34.62 4.30
2865 3375 3.332034 ACAAGTATTTTCGAACGGAGGG 58.668 45.455 0.00 0.00 0.00 4.30
2866 3376 3.007182 ACAAGTATTTTCGAACGGAGGGA 59.993 43.478 0.00 0.00 0.00 4.20
2867 3377 3.521947 AGTATTTTCGAACGGAGGGAG 57.478 47.619 0.00 0.00 0.00 4.30
2868 3378 2.830321 AGTATTTTCGAACGGAGGGAGT 59.170 45.455 0.00 0.00 0.00 3.85
2869 3379 4.019174 AGTATTTTCGAACGGAGGGAGTA 58.981 43.478 0.00 0.00 0.00 2.59
2870 3380 2.730550 TTTTCGAACGGAGGGAGTAC 57.269 50.000 0.00 0.00 0.00 2.73
2871 3381 1.619654 TTTCGAACGGAGGGAGTACA 58.380 50.000 0.00 0.00 0.00 2.90
2872 3382 1.843368 TTCGAACGGAGGGAGTACAT 58.157 50.000 0.00 0.00 0.00 2.29
2873 3383 2.715749 TCGAACGGAGGGAGTACATA 57.284 50.000 0.00 0.00 0.00 2.29
2874 3384 3.219176 TCGAACGGAGGGAGTACATAT 57.781 47.619 0.00 0.00 0.00 1.78
2875 3385 3.559069 TCGAACGGAGGGAGTACATATT 58.441 45.455 0.00 0.00 0.00 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 7.330900 TGTTGGGTTTCGTAGTAATTTCAAA 57.669 32.000 0.00 0.00 0.00 2.69
6 7 6.939132 TGTTGGGTTTCGTAGTAATTTCAA 57.061 33.333 0.00 0.00 0.00 2.69
7 8 6.939132 TTGTTGGGTTTCGTAGTAATTTCA 57.061 33.333 0.00 0.00 0.00 2.69
8 9 7.536281 GTCATTGTTGGGTTTCGTAGTAATTTC 59.464 37.037 0.00 0.00 0.00 2.17
9 10 7.364970 GTCATTGTTGGGTTTCGTAGTAATTT 58.635 34.615 0.00 0.00 0.00 1.82
10 11 6.072342 GGTCATTGTTGGGTTTCGTAGTAATT 60.072 38.462 0.00 0.00 0.00 1.40
11 12 5.413523 GGTCATTGTTGGGTTTCGTAGTAAT 59.586 40.000 0.00 0.00 0.00 1.89
12 13 4.756135 GGTCATTGTTGGGTTTCGTAGTAA 59.244 41.667 0.00 0.00 0.00 2.24
13 14 4.202336 TGGTCATTGTTGGGTTTCGTAGTA 60.202 41.667 0.00 0.00 0.00 1.82
14 15 3.143728 GGTCATTGTTGGGTTTCGTAGT 58.856 45.455 0.00 0.00 0.00 2.73
15 16 3.058501 GTGGTCATTGTTGGGTTTCGTAG 60.059 47.826 0.00 0.00 0.00 3.51
16 17 2.879646 GTGGTCATTGTTGGGTTTCGTA 59.120 45.455 0.00 0.00 0.00 3.43
17 18 1.679153 GTGGTCATTGTTGGGTTTCGT 59.321 47.619 0.00 0.00 0.00 3.85
18 19 1.953686 AGTGGTCATTGTTGGGTTTCG 59.046 47.619 0.00 0.00 0.00 3.46
19 20 2.031157 CGAGTGGTCATTGTTGGGTTTC 60.031 50.000 0.00 0.00 0.00 2.78
20 21 1.953686 CGAGTGGTCATTGTTGGGTTT 59.046 47.619 0.00 0.00 0.00 3.27
21 22 1.604604 CGAGTGGTCATTGTTGGGTT 58.395 50.000 0.00 0.00 0.00 4.11
22 23 0.889186 GCGAGTGGTCATTGTTGGGT 60.889 55.000 0.00 0.00 0.00 4.51
23 24 1.875963 GCGAGTGGTCATTGTTGGG 59.124 57.895 0.00 0.00 0.00 4.12
24 25 0.948623 TCGCGAGTGGTCATTGTTGG 60.949 55.000 3.71 0.00 0.00 3.77
25 26 0.865111 TTCGCGAGTGGTCATTGTTG 59.135 50.000 9.59 0.00 0.00 3.33
26 27 1.148310 CTTCGCGAGTGGTCATTGTT 58.852 50.000 9.59 0.00 0.00 2.83
27 28 0.317160 TCTTCGCGAGTGGTCATTGT 59.683 50.000 9.59 0.00 0.00 2.71
28 29 0.994995 CTCTTCGCGAGTGGTCATTG 59.005 55.000 9.59 0.00 34.95 2.82
39 40 1.992667 TGTTAGCATCAACTCTTCGCG 59.007 47.619 0.00 0.00 0.00 5.87
64 65 7.759489 TTGAAAGGTTCATATGGTATATGGC 57.241 36.000 2.13 3.57 39.84 4.40
93 94 9.774742 GTATTGTTGTTTTCTAGAATCATCCAC 57.225 33.333 5.89 5.54 0.00 4.02
105 106 6.560253 AGAGCGAATGTATTGTTGTTTTCT 57.440 33.333 0.00 0.00 0.00 2.52
106 107 6.741358 GGTAGAGCGAATGTATTGTTGTTTTC 59.259 38.462 0.00 0.00 0.00 2.29
107 108 6.205853 TGGTAGAGCGAATGTATTGTTGTTTT 59.794 34.615 0.00 0.00 0.00 2.43
108 109 5.703592 TGGTAGAGCGAATGTATTGTTGTTT 59.296 36.000 0.00 0.00 0.00 2.83
111 112 5.991328 ATGGTAGAGCGAATGTATTGTTG 57.009 39.130 0.00 0.00 0.00 3.33
120 121 1.001406 GCCTGCTATGGTAGAGCGAAT 59.999 52.381 0.00 0.00 43.19 3.34
121 122 0.389391 GCCTGCTATGGTAGAGCGAA 59.611 55.000 0.00 0.00 43.19 4.70
122 123 0.755327 TGCCTGCTATGGTAGAGCGA 60.755 55.000 0.00 0.00 43.19 4.93
124 125 0.465705 TGTGCCTGCTATGGTAGAGC 59.534 55.000 0.00 0.00 40.53 4.09
126 127 2.771372 TGAATGTGCCTGCTATGGTAGA 59.229 45.455 0.00 0.00 0.00 2.59
127 128 3.136763 CTGAATGTGCCTGCTATGGTAG 58.863 50.000 0.00 0.00 0.00 3.18
129 130 1.283029 ACTGAATGTGCCTGCTATGGT 59.717 47.619 0.00 0.00 0.00 3.55
135 136 0.242017 GACCAACTGAATGTGCCTGC 59.758 55.000 0.00 0.00 0.00 4.85
136 137 0.518636 CGACCAACTGAATGTGCCTG 59.481 55.000 0.00 0.00 0.00 4.85
138 139 0.798776 CTCGACCAACTGAATGTGCC 59.201 55.000 0.00 0.00 0.00 5.01
139 140 0.166814 GCTCGACCAACTGAATGTGC 59.833 55.000 0.00 0.00 0.00 4.57
140 141 0.798776 GGCTCGACCAACTGAATGTG 59.201 55.000 0.00 0.00 38.86 3.21
141 142 3.233355 GGCTCGACCAACTGAATGT 57.767 52.632 0.00 0.00 38.86 2.71
154 167 4.088823 CAAGGAGAAAATTCTTGGCTCG 57.911 45.455 0.00 0.00 37.73 5.03
168 181 7.206789 TGAATACCAATGAATACCAAGGAGA 57.793 36.000 0.00 0.00 0.00 3.71
175 188 7.264221 TGCACAAATGAATACCAATGAATACC 58.736 34.615 0.00 0.00 0.00 2.73
216 229 7.502696 TCGGTTGGTATACTATTGCTAATTGT 58.497 34.615 2.25 0.00 0.00 2.71
217 230 7.956420 TCGGTTGGTATACTATTGCTAATTG 57.044 36.000 2.25 0.00 0.00 2.32
218 231 8.372459 TGATCGGTTGGTATACTATTGCTAATT 58.628 33.333 2.25 0.00 0.00 1.40
220 233 7.292713 TGATCGGTTGGTATACTATTGCTAA 57.707 36.000 2.25 0.00 0.00 3.09
221 234 6.904463 TGATCGGTTGGTATACTATTGCTA 57.096 37.500 2.25 0.00 0.00 3.49
234 252 9.748708 AATATCAAATAATTGTTGATCGGTTGG 57.251 29.630 17.65 0.00 43.12 3.77
273 295 4.814294 GCCTAGTGGTGACGCCGG 62.814 72.222 0.00 0.00 43.65 6.13
274 296 4.063967 TGCCTAGTGGTGACGCCG 62.064 66.667 0.00 0.00 43.65 6.46
275 297 2.434359 GTGCCTAGTGGTGACGCC 60.434 66.667 0.00 0.00 43.65 5.68
281 303 2.526888 TAGCTACTGTGCCTAGTGGT 57.473 50.000 0.00 0.45 32.39 4.16
286 308 3.223435 GGACTCATAGCTACTGTGCCTA 58.777 50.000 0.00 0.00 0.00 3.93
287 309 2.035632 GGACTCATAGCTACTGTGCCT 58.964 52.381 0.00 0.00 0.00 4.75
351 397 7.030165 GGACGGACTAAGTAGTAGTTTAAACC 58.970 42.308 14.72 0.68 43.45 3.27
352 398 7.030165 GGGACGGACTAAGTAGTAGTTTAAAC 58.970 42.308 10.47 10.47 43.45 2.01
367 413 5.452255 AGTCTTACATTATGGGACGGACTA 58.548 41.667 0.00 0.00 31.08 2.59
368 414 4.287552 AGTCTTACATTATGGGACGGACT 58.712 43.478 0.00 0.83 32.86 3.85
369 415 4.667519 AGTCTTACATTATGGGACGGAC 57.332 45.455 0.00 0.00 32.86 4.79
373 419 9.005777 TGTTAACAAAGTCTTACATTATGGGAC 57.994 33.333 5.64 2.60 0.00 4.46
387 433 7.136289 TCCGTTCCATAATGTTAACAAAGTC 57.864 36.000 13.23 0.00 0.00 3.01
388 434 6.150474 CCTCCGTTCCATAATGTTAACAAAGT 59.850 38.462 13.23 3.80 0.00 2.66
389 435 6.373216 TCCTCCGTTCCATAATGTTAACAAAG 59.627 38.462 13.23 2.93 0.00 2.77
390 436 6.239396 TCCTCCGTTCCATAATGTTAACAAA 58.761 36.000 13.23 4.38 0.00 2.83
391 437 5.806818 TCCTCCGTTCCATAATGTTAACAA 58.193 37.500 13.23 0.00 0.00 2.83
393 439 9.715121 TTATATCCTCCGTTCCATAATGTTAAC 57.285 33.333 0.00 0.00 0.00 2.01
396 442 8.602424 TGATTATATCCTCCGTTCCATAATGTT 58.398 33.333 0.00 0.00 0.00 2.71
397 443 8.146053 TGATTATATCCTCCGTTCCATAATGT 57.854 34.615 0.00 0.00 0.00 2.71
450 548 5.281506 GGATGGGAGCATGGGGTTATTTATA 60.282 44.000 0.00 0.00 0.00 0.98
458 556 2.287117 TGGATGGGAGCATGGGGT 60.287 61.111 0.00 0.00 0.00 4.95
461 559 2.619849 GGATATGTGGATGGGAGCATGG 60.620 54.545 0.00 0.00 0.00 3.66
462 560 2.719739 GGATATGTGGATGGGAGCATG 58.280 52.381 0.00 0.00 0.00 4.06
465 563 0.674895 GCGGATATGTGGATGGGAGC 60.675 60.000 0.00 0.00 0.00 4.70
475 573 3.124636 GTGTTTTGAACGAGCGGATATGT 59.875 43.478 0.00 0.00 0.00 2.29
478 576 2.477375 GTGTGTTTTGAACGAGCGGATA 59.523 45.455 0.00 0.00 0.00 2.59
500 598 1.154073 GACGAGTTCGAGTTCGGGG 60.154 63.158 20.07 0.00 43.02 5.73
506 604 4.922103 GGAATGTTTTAGACGAGTTCGAGT 59.078 41.667 8.72 0.00 43.02 4.18
526 624 2.610438 AGGTGTACTAGTTCCGGGAA 57.390 50.000 5.09 5.09 0.00 3.97
626 725 3.429207 GGTTCTTTACTCAAGACGCTGAC 59.571 47.826 0.00 0.00 41.56 3.51
667 766 1.192428 GAAGGGACATGGGTAGTCGT 58.808 55.000 0.00 0.00 36.87 4.34
668 767 1.191535 TGAAGGGACATGGGTAGTCG 58.808 55.000 0.00 0.00 36.87 4.18
669 768 3.933861 AATGAAGGGACATGGGTAGTC 57.066 47.619 0.00 0.00 35.29 2.59
670 769 4.600062 GAAAATGAAGGGACATGGGTAGT 58.400 43.478 0.00 0.00 0.00 2.73
671 770 3.627577 CGAAAATGAAGGGACATGGGTAG 59.372 47.826 0.00 0.00 0.00 3.18
672 771 3.616219 CGAAAATGAAGGGACATGGGTA 58.384 45.455 0.00 0.00 0.00 3.69
808 1030 2.565834 GCAGTAGGGTTCTGGTTCAGTA 59.434 50.000 0.00 0.00 33.98 2.74
894 1173 2.018866 CTTGGAGATCGATCGGCGC 61.019 63.158 19.33 9.49 40.61 6.53
935 1214 3.139770 AGAATTCTGATTGGGGAGATGGG 59.860 47.826 7.30 0.00 0.00 4.00
983 1278 1.459592 CCATGACGACGGAACTTTGAC 59.540 52.381 0.00 0.00 0.00 3.18
984 1279 1.606994 CCCATGACGACGGAACTTTGA 60.607 52.381 0.00 0.00 0.00 2.69
986 1281 0.953960 GCCCATGACGACGGAACTTT 60.954 55.000 0.00 0.00 0.00 2.66
987 1282 1.375523 GCCCATGACGACGGAACTT 60.376 57.895 0.00 0.00 0.00 2.66
1240 1550 2.589540 CATGGCGGCCAGGTAGAA 59.410 61.111 27.62 0.97 36.75 2.10
1357 1667 1.125093 TTCGTCCCACTCCCACACAT 61.125 55.000 0.00 0.00 0.00 3.21
1443 1753 0.468226 ACCTCGAAACAGGCTTGTCA 59.532 50.000 0.32 0.00 36.98 3.58
1750 2060 3.265221 TGAAGAGAATCAATCACCTGCCT 59.735 43.478 0.00 0.00 37.82 4.75
1761 2071 5.945144 TGATCATCCACTGAAGAGAATCA 57.055 39.130 0.00 0.00 37.44 2.57
1764 2074 7.855375 ACTTATTGATCATCCACTGAAGAGAA 58.145 34.615 0.00 0.00 37.44 2.87
1818 2128 3.893763 ACGGCTCGCTCGGATGAG 61.894 66.667 3.70 3.70 45.49 2.90
1842 2152 2.805353 CGGTCGTCCTCGCTTGTG 60.805 66.667 0.00 0.00 36.96 3.33
1881 2191 2.768527 CTCCATTGAGCTACCAGGAAGA 59.231 50.000 0.00 0.00 0.00 2.87
2038 2350 6.857777 ACATATATCTCTGCAGAGTTTTGC 57.142 37.500 36.32 0.00 42.60 3.68
2203 2515 3.325870 TCATGTCCAAAAGACTAGCACG 58.674 45.455 0.00 0.00 46.46 5.34
2206 2518 6.767902 TCCATTATCATGTCCAAAAGACTAGC 59.232 38.462 0.00 0.00 46.46 3.42
2227 2540 9.387257 GGAAGATTTTTGCATTTAGAAATCCAT 57.613 29.630 12.41 6.25 38.59 3.41
2294 2607 5.860641 TCAACACAGTCAAAACTCGTAAAC 58.139 37.500 0.00 0.00 31.71 2.01
2518 2841 5.875359 AGCTTAGCAACCAGTGAAGTAATAC 59.125 40.000 7.07 0.00 0.00 1.89
2519 2842 6.049955 AGCTTAGCAACCAGTGAAGTAATA 57.950 37.500 7.07 0.00 0.00 0.98
2568 2891 9.900710 CTTACAATCGATAGCTGACTTTATAGT 57.099 33.333 0.00 0.00 37.31 2.12
2688 3198 6.145535 GCTTCAAATTAGCATATGCCACTAC 58.854 40.000 23.96 0.00 43.38 2.73
2751 3261 1.856539 TTCCGGACGGAGGGAGTACT 61.857 60.000 13.64 0.00 46.06 2.73
2752 3262 0.967380 TTTCCGGACGGAGGGAGTAC 60.967 60.000 13.64 0.00 46.06 2.73
2753 3263 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
2754 3264 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
2755 3265 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
2756 3266 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
2757 3267 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
2758 3268 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
2759 3269 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
2760 3270 1.135315 CGACAAGTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
2761 3271 1.274596 CGACAAGTATTTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
2762 3272 1.135315 TCCGACAAGTATTTCCGGACG 60.135 52.381 1.83 0.00 43.47 4.79
2763 3273 2.537401 CTCCGACAAGTATTTCCGGAC 58.463 52.381 1.83 0.00 43.47 4.79
2764 3274 1.479323 CCTCCGACAAGTATTTCCGGA 59.521 52.381 0.00 0.00 45.74 5.14
2765 3275 1.479323 TCCTCCGACAAGTATTTCCGG 59.521 52.381 0.00 0.00 41.36 5.14
2766 3276 2.953466 TCCTCCGACAAGTATTTCCG 57.047 50.000 0.00 0.00 0.00 4.30
2767 3277 4.766375 TCATTCCTCCGACAAGTATTTCC 58.234 43.478 0.00 0.00 0.00 3.13
2768 3278 6.927294 ATTCATTCCTCCGACAAGTATTTC 57.073 37.500 0.00 0.00 0.00 2.17
2770 3280 9.877178 GATATATTCATTCCTCCGACAAGTATT 57.123 33.333 0.00 0.00 0.00 1.89
2771 3281 9.261035 AGATATATTCATTCCTCCGACAAGTAT 57.739 33.333 0.00 0.00 0.00 2.12
2772 3282 8.651589 AGATATATTCATTCCTCCGACAAGTA 57.348 34.615 0.00 0.00 0.00 2.24
2773 3283 7.546250 AGATATATTCATTCCTCCGACAAGT 57.454 36.000 0.00 0.00 0.00 3.16
2774 3284 8.961634 TCTAGATATATTCATTCCTCCGACAAG 58.038 37.037 0.00 0.00 0.00 3.16
2775 3285 8.740906 GTCTAGATATATTCATTCCTCCGACAA 58.259 37.037 0.00 0.00 0.00 3.18
2776 3286 7.065923 CGTCTAGATATATTCATTCCTCCGACA 59.934 40.741 0.00 0.00 0.00 4.35
2777 3287 7.066043 ACGTCTAGATATATTCATTCCTCCGAC 59.934 40.741 0.00 0.00 0.00 4.79
2778 3288 7.110810 ACGTCTAGATATATTCATTCCTCCGA 58.889 38.462 0.00 0.00 0.00 4.55
2779 3289 7.323049 ACGTCTAGATATATTCATTCCTCCG 57.677 40.000 0.00 0.00 0.00 4.63
2817 3327 9.467258 CGAAGAAATGCATAAAAATGGATGTAT 57.533 29.630 0.00 0.00 32.82 2.29
2818 3328 8.681806 TCGAAGAAATGCATAAAAATGGATGTA 58.318 29.630 0.00 0.00 32.82 2.29
2819 3329 7.489113 GTCGAAGAAATGCATAAAAATGGATGT 59.511 33.333 0.00 0.00 39.69 3.06
2820 3330 7.488792 TGTCGAAGAAATGCATAAAAATGGATG 59.511 33.333 0.00 0.00 39.69 3.51
2821 3331 7.546358 TGTCGAAGAAATGCATAAAAATGGAT 58.454 30.769 0.00 0.00 39.69 3.41
2822 3332 6.918626 TGTCGAAGAAATGCATAAAAATGGA 58.081 32.000 0.00 0.00 39.69 3.41
2823 3333 7.329226 ACTTGTCGAAGAAATGCATAAAAATGG 59.671 33.333 0.00 0.00 39.69 3.16
2824 3334 8.231304 ACTTGTCGAAGAAATGCATAAAAATG 57.769 30.769 0.00 0.00 39.69 2.32
2826 3336 9.906660 AATACTTGTCGAAGAAATGCATAAAAA 57.093 25.926 0.00 0.00 39.69 1.94
2827 3337 9.906660 AAATACTTGTCGAAGAAATGCATAAAA 57.093 25.926 0.00 0.00 39.69 1.52
2828 3338 9.906660 AAAATACTTGTCGAAGAAATGCATAAA 57.093 25.926 0.00 0.00 39.69 1.40
2829 3339 9.554724 GAAAATACTTGTCGAAGAAATGCATAA 57.445 29.630 0.00 0.00 39.69 1.90
2830 3340 7.902917 CGAAAATACTTGTCGAAGAAATGCATA 59.097 33.333 0.00 0.00 39.69 3.14
2831 3341 6.742718 CGAAAATACTTGTCGAAGAAATGCAT 59.257 34.615 0.00 0.00 39.69 3.96
2832 3342 6.073494 TCGAAAATACTTGTCGAAGAAATGCA 60.073 34.615 0.00 0.00 40.59 3.96
2833 3343 6.304126 TCGAAAATACTTGTCGAAGAAATGC 58.696 36.000 0.00 0.00 40.59 3.56
2841 3351 3.899734 TCCGTTCGAAAATACTTGTCGA 58.100 40.909 0.00 0.00 41.72 4.20
2842 3352 3.060363 CCTCCGTTCGAAAATACTTGTCG 59.940 47.826 0.00 0.00 36.12 4.35
2843 3353 3.370061 CCCTCCGTTCGAAAATACTTGTC 59.630 47.826 0.00 0.00 0.00 3.18
2844 3354 3.007182 TCCCTCCGTTCGAAAATACTTGT 59.993 43.478 0.00 0.00 0.00 3.16
2845 3355 3.592059 TCCCTCCGTTCGAAAATACTTG 58.408 45.455 0.00 0.00 0.00 3.16
2846 3356 3.260128 ACTCCCTCCGTTCGAAAATACTT 59.740 43.478 0.00 0.00 0.00 2.24
2847 3357 2.830321 ACTCCCTCCGTTCGAAAATACT 59.170 45.455 0.00 0.00 0.00 2.12
2848 3358 3.242549 ACTCCCTCCGTTCGAAAATAC 57.757 47.619 0.00 0.00 0.00 1.89
2849 3359 3.763360 TGTACTCCCTCCGTTCGAAAATA 59.237 43.478 0.00 0.00 0.00 1.40
2850 3360 2.564062 TGTACTCCCTCCGTTCGAAAAT 59.436 45.455 0.00 0.00 0.00 1.82
2851 3361 1.962807 TGTACTCCCTCCGTTCGAAAA 59.037 47.619 0.00 0.00 0.00 2.29
2852 3362 1.619654 TGTACTCCCTCCGTTCGAAA 58.380 50.000 0.00 0.00 0.00 3.46
2853 3363 1.843368 ATGTACTCCCTCCGTTCGAA 58.157 50.000 0.00 0.00 0.00 3.71
2854 3364 2.715749 TATGTACTCCCTCCGTTCGA 57.284 50.000 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.