Multiple sequence alignment - TraesCS2B01G344700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G344700 chr2B 100.000 4304 0 0 1 4304 491351630 491347327 0.000000e+00 7949.0
1 TraesCS2B01G344700 chr2B 90.683 322 21 8 3986 4304 762463540 762463225 1.850000e-113 420.0
2 TraesCS2B01G344700 chr2B 92.857 84 5 1 2890 2972 197957546 197957463 2.100000e-23 121.0
3 TraesCS2B01G344700 chr2B 85.586 111 9 6 2859 2968 478114817 478114713 4.550000e-20 110.0
4 TraesCS2B01G344700 chr2A 86.667 2640 171 71 261 2778 570729394 570731974 0.000000e+00 2758.0
5 TraesCS2B01G344700 chr2A 91.521 1203 59 14 2787 3984 570732024 570733188 0.000000e+00 1616.0
6 TraesCS2B01G344700 chr2A 95.000 80 2 2 2890 2968 202840601 202840523 1.630000e-24 124.0
7 TraesCS2B01G344700 chr2A 94.937 79 4 0 49 127 570729242 570729320 1.630000e-24 124.0
8 TraesCS2B01G344700 chr2A 92.857 84 4 2 2890 2972 483604650 483604568 2.100000e-23 121.0
9 TraesCS2B01G344700 chr2D 88.035 2265 97 48 217 2371 419048525 419046325 0.000000e+00 2521.0
10 TraesCS2B01G344700 chr2D 89.201 676 44 6 2965 3633 419045660 419045007 0.000000e+00 817.0
11 TraesCS2B01G344700 chr2D 91.530 366 30 1 3622 3987 419044405 419044041 1.790000e-138 503.0
12 TraesCS2B01G344700 chr2D 84.711 484 32 15 2299 2743 419046328 419045848 3.050000e-121 446.0
13 TraesCS2B01G344700 chr2D 93.478 184 11 1 3622 3805 419044656 419044474 5.480000e-69 272.0
14 TraesCS2B01G344700 chr2D 88.119 101 6 5 2873 2971 26618678 26618774 9.780000e-22 115.0
15 TraesCS2B01G344700 chr2D 84.694 98 5 6 77 165 419048621 419048525 5.930000e-14 89.8
16 TraesCS2B01G344700 chr6B 91.049 324 24 5 3982 4304 573685154 573685473 2.380000e-117 433.0
17 TraesCS2B01G344700 chr6B 90.303 330 26 6 3979 4304 35071406 35071733 1.110000e-115 427.0
18 TraesCS2B01G344700 chr6B 89.109 101 10 1 3567 3667 680933317 680933218 1.630000e-24 124.0
19 TraesCS2B01G344700 chr7B 89.521 334 29 6 3973 4304 747163250 747163579 6.660000e-113 418.0
20 TraesCS2B01G344700 chr7B 89.735 302 25 5 3986 4285 718843328 718843625 8.730000e-102 381.0
21 TraesCS2B01G344700 chr7B 93.827 81 4 1 2890 2969 740996161 740996241 2.100000e-23 121.0
22 TraesCS2B01G344700 chr1B 89.318 337 20 8 3984 4304 561622389 561622053 4.010000e-110 409.0
23 TraesCS2B01G344700 chr1B 84.928 345 23 12 3984 4304 615754469 615754808 5.370000e-84 322.0
24 TraesCS2B01G344700 chr3B 88.991 327 31 5 3982 4304 51045399 51045724 2.410000e-107 399.0
25 TraesCS2B01G344700 chr3B 88.988 336 18 8 3986 4304 771172886 771173219 8.670000e-107 398.0
26 TraesCS2B01G344700 chr3B 95.197 229 11 0 4076 4304 629283066 629282838 3.160000e-96 363.0
27 TraesCS2B01G344700 chr5D 85.672 335 31 9 3983 4304 13914720 13915050 1.920000e-88 337.0
28 TraesCS2B01G344700 chr7D 84.615 338 32 9 3983 4304 576654451 576654784 6.950000e-83 318.0
29 TraesCS2B01G344700 chr4A 93.023 86 6 0 3575 3660 488252337 488252252 4.520000e-25 126.0
30 TraesCS2B01G344700 chr4A 89.011 91 9 1 3572 3661 472961347 472961257 1.270000e-20 111.0
31 TraesCS2B01G344700 chr5B 92.941 85 6 0 2890 2974 339905175 339905091 1.630000e-24 124.0
32 TraesCS2B01G344700 chr4D 91.111 90 8 0 3571 3660 93609373 93609462 5.840000e-24 122.0
33 TraesCS2B01G344700 chr3D 92.857 84 5 1 2890 2972 434025801 434025884 2.100000e-23 121.0
34 TraesCS2B01G344700 chr5A 91.765 85 7 0 3575 3659 370102518 370102434 7.560000e-23 119.0
35 TraesCS2B01G344700 chr4B 91.011 89 7 1 3572 3660 132053242 132053329 7.560000e-23 119.0
36 TraesCS2B01G344700 chr3A 87.097 93 11 1 3568 3659 465824282 465824190 2.120000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G344700 chr2B 491347327 491351630 4303 True 7949.000000 7949 100.000000 1 4304 1 chr2B.!!$R3 4303
1 TraesCS2B01G344700 chr2A 570729242 570733188 3946 False 1499.333333 2758 91.041667 49 3984 3 chr2A.!!$F1 3935
2 TraesCS2B01G344700 chr2D 419044041 419048621 4580 True 774.800000 2521 88.608167 77 3987 6 chr2D.!!$R1 3910

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
40 41 0.037232 GGTAACTCTGGTTGCGCTCT 60.037 55.0 9.73 0.00 38.61 4.09 F
812 894 0.110056 GGCAACAATCGCACTCACAG 60.110 55.0 0.00 0.00 0.00 3.66 F
2143 2319 0.325933 CTGACATGGCTCCACTGGAA 59.674 55.0 0.00 0.00 0.00 3.53 F
2458 2770 1.234821 CCGTAACTTGGCAAGCAAGA 58.765 50.0 26.45 6.99 34.08 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1519 1661 0.040204 CTCCCAGGCCCTTTGATTGT 59.960 55.000 0.00 0.0 0.0 2.71 R
2434 2721 1.196127 GCTTGCCAAGTTACGGTACAC 59.804 52.381 6.28 0.0 0.0 2.90 R
3240 3626 0.104487 TGTACGCCTTGTCAACGGAA 59.896 50.000 5.53 0.0 0.0 4.30 R
4261 5261 0.174617 CGAGTCAAGGAGGAGAAGGC 59.825 60.000 0.00 0.0 0.0 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.799564 TTTGCTTTTACCCTGCTTATGG 57.200 40.909 0.00 0.00 0.00 2.74
30 31 3.199880 CCCTGCTTATGGGTAACTCTG 57.800 52.381 0.00 0.00 39.82 3.35
31 32 2.158755 CCCTGCTTATGGGTAACTCTGG 60.159 54.545 0.00 0.00 39.82 3.86
32 33 2.505819 CCTGCTTATGGGTAACTCTGGT 59.494 50.000 0.00 0.00 0.00 4.00
33 34 3.054361 CCTGCTTATGGGTAACTCTGGTT 60.054 47.826 0.00 0.00 39.26 3.67
34 35 3.941483 CTGCTTATGGGTAACTCTGGTTG 59.059 47.826 0.00 0.00 36.92 3.77
35 36 2.683362 GCTTATGGGTAACTCTGGTTGC 59.317 50.000 0.00 0.00 36.92 4.17
36 37 2.684001 TATGGGTAACTCTGGTTGCG 57.316 50.000 0.00 0.00 38.61 4.85
37 38 0.676782 ATGGGTAACTCTGGTTGCGC 60.677 55.000 0.00 0.00 45.72 6.09
38 39 1.003718 GGGTAACTCTGGTTGCGCT 60.004 57.895 9.73 0.00 43.58 5.92
39 40 1.019805 GGGTAACTCTGGTTGCGCTC 61.020 60.000 9.73 1.18 43.58 5.03
40 41 0.037232 GGTAACTCTGGTTGCGCTCT 60.037 55.000 9.73 0.00 38.61 4.09
41 42 1.203994 GGTAACTCTGGTTGCGCTCTA 59.796 52.381 9.73 0.00 38.61 2.43
42 43 2.260481 GTAACTCTGGTTGCGCTCTAC 58.740 52.381 9.73 4.00 36.92 2.59
43 44 0.969894 AACTCTGGTTGCGCTCTACT 59.030 50.000 9.73 0.00 33.96 2.57
44 45 0.969894 ACTCTGGTTGCGCTCTACTT 59.030 50.000 9.73 0.00 0.00 2.24
45 46 1.067495 ACTCTGGTTGCGCTCTACTTC 60.067 52.381 9.73 0.00 0.00 3.01
46 47 1.203523 CTCTGGTTGCGCTCTACTTCT 59.796 52.381 9.73 0.00 0.00 2.85
47 48 2.423892 CTCTGGTTGCGCTCTACTTCTA 59.576 50.000 9.73 0.00 0.00 2.10
58 59 4.554330 CGCTCTACTTCTATAACGGTGGTC 60.554 50.000 0.00 0.00 0.00 4.02
76 77 5.185056 GGTGGTCTATATTTTGGTTGTGCTT 59.815 40.000 0.00 0.00 0.00 3.91
118 141 6.128849 TGGTTTAAATTCGAGCACTAACGTAC 60.129 38.462 0.00 0.00 0.00 3.67
137 160 3.332761 ACGTGCTGTTGTTGTACATTG 57.667 42.857 0.00 0.00 0.00 2.82
138 161 2.043411 CGTGCTGTTGTTGTACATTGC 58.957 47.619 0.00 0.00 0.00 3.56
139 162 2.286950 CGTGCTGTTGTTGTACATTGCT 60.287 45.455 0.00 0.00 0.00 3.91
141 164 3.486841 GTGCTGTTGTTGTACATTGCTTG 59.513 43.478 0.00 0.00 0.00 4.01
171 195 2.544267 CGATATCGCTGGGTTTTTCCTC 59.456 50.000 12.95 0.00 36.25 3.71
172 196 3.741388 CGATATCGCTGGGTTTTTCCTCT 60.741 47.826 12.95 0.00 36.25 3.69
174 198 3.713826 ATCGCTGGGTTTTTCCTCTTA 57.286 42.857 0.00 0.00 36.25 2.10
175 199 3.053831 TCGCTGGGTTTTTCCTCTTAG 57.946 47.619 0.00 0.00 36.25 2.18
176 200 2.635915 TCGCTGGGTTTTTCCTCTTAGA 59.364 45.455 0.00 0.00 36.25 2.10
177 201 3.263425 TCGCTGGGTTTTTCCTCTTAGAT 59.737 43.478 0.00 0.00 36.25 1.98
178 202 3.375299 CGCTGGGTTTTTCCTCTTAGATG 59.625 47.826 0.00 0.00 36.25 2.90
179 203 4.336280 GCTGGGTTTTTCCTCTTAGATGT 58.664 43.478 0.00 0.00 36.25 3.06
180 204 5.497474 GCTGGGTTTTTCCTCTTAGATGTA 58.503 41.667 0.00 0.00 36.25 2.29
181 205 5.586643 GCTGGGTTTTTCCTCTTAGATGTAG 59.413 44.000 0.00 0.00 36.25 2.74
182 206 6.576442 GCTGGGTTTTTCCTCTTAGATGTAGA 60.576 42.308 0.00 0.00 36.25 2.59
183 207 7.510675 TGGGTTTTTCCTCTTAGATGTAGAT 57.489 36.000 0.00 0.00 36.25 1.98
184 208 7.338710 TGGGTTTTTCCTCTTAGATGTAGATG 58.661 38.462 0.00 0.00 36.25 2.90
185 209 7.037586 TGGGTTTTTCCTCTTAGATGTAGATGT 60.038 37.037 0.00 0.00 36.25 3.06
186 210 7.829706 GGGTTTTTCCTCTTAGATGTAGATGTT 59.170 37.037 0.00 0.00 36.25 2.71
187 211 9.232473 GGTTTTTCCTCTTAGATGTAGATGTTT 57.768 33.333 0.00 0.00 0.00 2.83
216 240 9.702253 TTTCCTCTTAGATGTAGATGTAGTTCT 57.298 33.333 0.00 0.00 0.00 3.01
223 247 6.336566 AGATGTAGATGTAGTTCTGCAGTTG 58.663 40.000 14.67 0.00 40.86 3.16
241 265 4.022589 CAGTTGTGTTGCATTCTCATCCTT 60.023 41.667 0.00 0.00 0.00 3.36
259 283 2.617308 CCTTCCACGATTCGTCTAGCTA 59.383 50.000 9.11 0.00 38.32 3.32
315 347 0.745845 ATTGCAGCGGCTAGAACCTG 60.746 55.000 10.92 0.00 41.91 4.00
342 374 0.684479 TGGCTACTCTGCATCCGAGT 60.684 55.000 11.39 11.39 43.64 4.18
389 436 3.221389 GCCATCGTGCCATGCCAT 61.221 61.111 0.00 0.00 0.00 4.40
415 462 1.817209 CCTCCGAGTTGGTAGAGGC 59.183 63.158 0.00 0.00 39.54 4.70
501 554 2.551270 GACAGCTGGTCAAACGCG 59.449 61.111 19.93 3.53 46.19 6.01
540 593 0.818296 CGGACAATCGAGTCTTCCCT 59.182 55.000 4.97 0.00 38.57 4.20
573 626 2.192624 GCACAAACACACACAATGGAC 58.807 47.619 0.00 0.00 0.00 4.02
589 642 5.178797 CAATGGACGTCTAGTTCCATCTTT 58.821 41.667 16.46 6.55 38.73 2.52
596 649 5.105675 ACGTCTAGTTCCATCTTTCTCTTCC 60.106 44.000 0.00 0.00 0.00 3.46
651 704 0.395686 CACCCTGGATCAGATCGCAT 59.604 55.000 4.23 0.00 32.44 4.73
677 730 2.741759 TCAGCATGAACTGAGCGTAA 57.258 45.000 0.00 0.00 45.97 3.18
678 731 3.038788 TCAGCATGAACTGAGCGTAAA 57.961 42.857 0.00 0.00 45.97 2.01
679 732 2.736721 TCAGCATGAACTGAGCGTAAAC 59.263 45.455 0.00 0.00 45.97 2.01
680 733 2.076863 AGCATGAACTGAGCGTAAACC 58.923 47.619 0.00 0.00 0.00 3.27
681 734 1.804151 GCATGAACTGAGCGTAAACCA 59.196 47.619 0.00 0.00 0.00 3.67
740 815 3.985925 GCCGAGTATTATACCTGGAAACG 59.014 47.826 12.76 0.00 0.00 3.60
811 893 1.840630 CGGCAACAATCGCACTCACA 61.841 55.000 0.00 0.00 0.00 3.58
812 894 0.110056 GGCAACAATCGCACTCACAG 60.110 55.000 0.00 0.00 0.00 3.66
856 943 1.906333 CCCCAAGAAACCCCAACCG 60.906 63.158 0.00 0.00 0.00 4.44
857 944 1.906333 CCCAAGAAACCCCAACCGG 60.906 63.158 0.00 0.00 0.00 5.28
858 945 2.570284 CCAAGAAACCCCAACCGGC 61.570 63.158 0.00 0.00 0.00 6.13
860 947 3.076217 AAGAAACCCCAACCGGCCA 62.076 57.895 0.00 0.00 0.00 5.36
861 948 3.299977 GAAACCCCAACCGGCCAC 61.300 66.667 0.00 0.00 0.00 5.01
862 949 4.926162 AAACCCCAACCGGCCACC 62.926 66.667 0.00 0.00 0.00 4.61
945 1033 4.435436 CACCGCCGCTGCTGACTA 62.435 66.667 0.00 0.00 34.43 2.59
946 1034 4.135153 ACCGCCGCTGCTGACTAG 62.135 66.667 0.00 0.00 34.43 2.57
994 1093 0.824109 ATCTCGCCGGAACATCTGAA 59.176 50.000 5.05 0.00 0.00 3.02
1129 1232 3.558674 CTCAAGGTGGAGCGGAAAT 57.441 52.632 0.00 0.00 0.00 2.17
1373 1476 0.802607 CTCGCGCTCAAGAAGGTACC 60.803 60.000 2.73 2.73 0.00 3.34
1374 1477 1.080093 CGCGCTCAAGAAGGTACCA 60.080 57.895 15.94 0.00 0.00 3.25
1375 1478 1.352156 CGCGCTCAAGAAGGTACCAC 61.352 60.000 15.94 7.86 0.00 4.16
1397 1502 2.936032 ACCACCCCCTGCTTCCTC 60.936 66.667 0.00 0.00 0.00 3.71
1473 1601 3.187432 GTGGAGTCAAAGCTTGCTTAGAC 59.813 47.826 8.36 4.04 0.00 2.59
1491 1619 4.870123 AGACCATTAATTGCTGCAAACA 57.130 36.364 20.06 7.17 0.00 2.83
1502 1630 2.293122 TGCTGCAAACAACCACAGATAC 59.707 45.455 0.00 0.00 31.67 2.24
1503 1631 2.554032 GCTGCAAACAACCACAGATACT 59.446 45.455 0.00 0.00 31.67 2.12
1519 1661 9.653287 CCACAGATACTAAGTAACAAAGAATCA 57.347 33.333 0.00 0.00 0.00 2.57
1533 1675 3.463048 AGAATCACAATCAAAGGGCCT 57.537 42.857 0.00 0.00 0.00 5.19
1568 1710 2.211806 GCCAGAGCTTGATTCTAGCAG 58.788 52.381 19.75 10.33 41.11 4.24
1578 1720 6.538021 AGCTTGATTCTAGCAGTATGTTCTTG 59.462 38.462 19.75 0.00 41.11 3.02
1592 1734 7.066284 CAGTATGTTCTTGCTAGCTAAAATGGT 59.934 37.037 17.23 0.00 0.00 3.55
1603 1745 2.799978 GCTAAAATGGTTGTGCGCTTTT 59.200 40.909 9.73 7.73 0.00 2.27
1607 1749 2.068837 ATGGTTGTGCGCTTTTGATG 57.931 45.000 9.73 0.00 0.00 3.07
1705 1851 3.489355 TGTTGTTGCCAGATCAGATTGT 58.511 40.909 0.00 0.00 0.00 2.71
1759 1919 7.831690 TCCACCATATTGCTGAAAACAATACTA 59.168 33.333 0.00 0.00 41.45 1.82
1836 2001 4.330074 GCTGCCACATGTAGTTTACTACTG 59.670 45.833 18.06 15.36 46.74 2.74
1837 2002 5.477607 TGCCACATGTAGTTTACTACTGT 57.522 39.130 18.06 15.84 46.74 3.55
1838 2003 6.593268 TGCCACATGTAGTTTACTACTGTA 57.407 37.500 18.06 2.22 46.74 2.74
1839 2004 6.392354 TGCCACATGTAGTTTACTACTGTAC 58.608 40.000 18.06 14.36 46.74 2.90
1889 2054 6.017852 TGAGTAGAACGTGTATGCTATCTCTG 60.018 42.308 0.00 0.00 0.00 3.35
1905 2070 4.890158 TCTCTGAGCATGTTGTAGGAAA 57.110 40.909 0.00 0.00 0.00 3.13
1908 2073 4.318332 TCTGAGCATGTTGTAGGAAACTG 58.682 43.478 0.00 0.00 43.88 3.16
1909 2074 3.411446 TGAGCATGTTGTAGGAAACTGG 58.589 45.455 0.00 0.00 43.88 4.00
1910 2075 3.072330 TGAGCATGTTGTAGGAAACTGGA 59.928 43.478 0.00 0.00 43.88 3.86
1911 2076 4.263462 TGAGCATGTTGTAGGAAACTGGAT 60.263 41.667 0.00 0.00 43.88 3.41
1912 2077 4.265073 AGCATGTTGTAGGAAACTGGATC 58.735 43.478 0.00 0.00 43.88 3.36
1914 2079 4.253685 CATGTTGTAGGAAACTGGATCGT 58.746 43.478 0.00 0.00 43.88 3.73
1915 2080 3.659786 TGTTGTAGGAAACTGGATCGTG 58.340 45.455 0.00 0.00 43.88 4.35
1956 2124 0.875040 TTTGCGCAACATGGTTGCAG 60.875 50.000 24.99 21.28 45.14 4.41
1963 2131 2.734670 CAACATGGTTGCAGTCTTGTG 58.265 47.619 0.00 0.00 0.00 3.33
1977 2146 3.643792 AGTCTTGTGGAGCTAACTTGACT 59.356 43.478 15.18 15.18 0.00 3.41
1998 2167 6.016610 TGACTAGTTGGTTTTGTAAATCTGCC 60.017 38.462 0.00 0.00 0.00 4.85
2143 2319 0.325933 CTGACATGGCTCCACTGGAA 59.674 55.000 0.00 0.00 0.00 3.53
2183 2359 4.553330 TTCTGTAGTTCCAAGGTCATCC 57.447 45.455 0.00 0.00 0.00 3.51
2198 2374 7.041780 CCAAGGTCATCCGATTAAGTAATCAAG 60.042 40.741 10.78 2.87 41.59 3.02
2335 2552 4.088634 TGGATCCTGAAATTGGAAACCTG 58.911 43.478 14.23 0.00 37.13 4.00
2348 2565 5.036117 TGGAAACCTGGATATGAGCTTAC 57.964 43.478 0.00 0.00 0.00 2.34
2434 2721 4.999950 GTCCTTATCTGCAATATCCTGGTG 59.000 45.833 0.00 0.00 0.00 4.17
2439 2726 4.137116 TCTGCAATATCCTGGTGTGTAC 57.863 45.455 0.00 0.00 0.00 2.90
2458 2770 1.234821 CCGTAACTTGGCAAGCAAGA 58.765 50.000 26.45 6.99 34.08 3.02
2475 2788 3.979495 GCAAGAGCATTCACTCTGTTTTG 59.021 43.478 0.00 0.00 46.38 2.44
2484 2797 3.620488 TCACTCTGTTTTGCCTTTGACT 58.380 40.909 0.00 0.00 0.00 3.41
2487 2800 2.689983 CTCTGTTTTGCCTTTGACTGGT 59.310 45.455 0.00 0.00 0.00 4.00
2562 2878 4.513442 CATTATCTCCCCACTTCGAACAA 58.487 43.478 0.00 0.00 0.00 2.83
2671 2991 9.317936 CTACTTACAGACTGCAATAAATGATCA 57.682 33.333 1.25 0.00 0.00 2.92
2743 3064 4.276926 GCAGAGACTTTCATGTTGGTTCTT 59.723 41.667 0.00 0.00 0.00 2.52
2745 3066 6.681368 GCAGAGACTTTCATGTTGGTTCTTTT 60.681 38.462 0.00 0.00 0.00 2.27
2746 3067 7.260603 CAGAGACTTTCATGTTGGTTCTTTTT 58.739 34.615 0.00 0.00 0.00 1.94
2781 3115 1.892209 CCAGGGTGTTGGTTCTGTAC 58.108 55.000 0.00 0.00 33.38 2.90
2782 3116 1.420138 CCAGGGTGTTGGTTCTGTACT 59.580 52.381 0.00 0.00 33.38 2.73
2783 3117 2.635915 CCAGGGTGTTGGTTCTGTACTA 59.364 50.000 0.00 0.00 33.38 1.82
2784 3118 3.263425 CCAGGGTGTTGGTTCTGTACTAT 59.737 47.826 0.00 0.00 33.38 2.12
2887 3262 3.057734 GTCAAGTTGACAAGTACCTCCG 58.942 50.000 27.37 0.00 46.22 4.63
2907 3285 6.071503 CCTCCGACCTCCGTAAAGAAATATAT 60.072 42.308 0.00 0.00 36.31 0.86
2910 3288 7.014518 TCCGACCTCCGTAAAGAAATATATGAA 59.985 37.037 0.00 0.00 36.31 2.57
2912 3290 7.650504 CGACCTCCGTAAAGAAATATATGAACA 59.349 37.037 0.00 0.00 0.00 3.18
2913 3291 9.490379 GACCTCCGTAAAGAAATATATGAACAT 57.510 33.333 0.00 0.00 0.00 2.71
3003 3382 4.869451 TCCTTCTTCCCTCTAAGGTACTC 58.131 47.826 0.00 0.00 38.49 2.59
3004 3383 4.544968 TCCTTCTTCCCTCTAAGGTACTCT 59.455 45.833 0.00 0.00 38.49 3.24
3023 3402 3.507411 TCTTACCTGCTTACCTGTGAGT 58.493 45.455 0.00 0.00 0.00 3.41
3052 3435 7.760131 TGCTGTTTTTCTTCTTCAAAGATTG 57.240 32.000 0.00 0.00 34.49 2.67
3082 3465 6.998074 TCAAAATATCCTCGGTAATGCTTCAT 59.002 34.615 0.00 0.00 0.00 2.57
3094 3477 6.183360 CGGTAATGCTTCATTCTCACATTCTT 60.183 38.462 0.00 0.00 35.54 2.52
3095 3478 7.011389 CGGTAATGCTTCATTCTCACATTCTTA 59.989 37.037 0.00 0.00 35.54 2.10
3097 3480 9.102757 GTAATGCTTCATTCTCACATTCTTAGA 57.897 33.333 0.00 0.00 35.54 2.10
3122 3508 6.319658 ACTTGTATTCACATTTGATAGCTGGG 59.680 38.462 0.00 0.00 33.76 4.45
3183 3569 3.373226 CCTGCTTGGCACTGCATT 58.627 55.556 13.59 0.00 37.76 3.56
3220 3606 1.951424 GCTCCTACGTCACTCACTCCT 60.951 57.143 0.00 0.00 0.00 3.69
3246 3632 2.105993 AGGCTTCCTGTACTTTTCCGTT 59.894 45.455 0.00 0.00 29.57 4.44
3379 3765 8.904834 TGTGTAATTTAAACTGCTGTTTTAGGA 58.095 29.630 24.17 6.21 43.13 2.94
3389 3775 0.963962 TGTTTTAGGAGCTCGACGGT 59.036 50.000 7.83 0.00 0.00 4.83
3435 3821 1.751351 TCACCTCTCCGCATACAGAAG 59.249 52.381 0.00 0.00 0.00 2.85
3503 3889 1.676916 GCTGAATACTGCTGACCTGCA 60.677 52.381 0.00 1.80 41.05 4.41
3520 3906 3.432467 CCTGCAAAGCTCTCAGATCTCAT 60.432 47.826 10.33 0.00 0.00 2.90
3542 3928 0.458669 TACATCCTTCGAGCCGGTTC 59.541 55.000 8.48 8.48 0.00 3.62
3584 3970 6.979238 AGGTTGCTAAATATGTACTTCGTCTC 59.021 38.462 0.00 0.00 0.00 3.36
3656 4403 2.614829 ATAATTTGGGACGGAGGTCG 57.385 50.000 0.00 0.00 44.39 4.79
3702 4700 5.838529 CCAAACGTCTTTTAATTTGGGACT 58.161 37.500 7.76 0.00 44.86 3.85
3768 4766 2.592993 CCAAGCCTTCGACTGGGGA 61.593 63.158 5.88 0.00 0.00 4.81
3780 4779 1.628846 GACTGGGGAAGGCAGACTAAA 59.371 52.381 0.00 0.00 32.10 1.85
3797 4796 7.331934 GCAGACTAAAGTTACTGTTGATGATGA 59.668 37.037 0.00 0.00 33.57 2.92
3847 4847 1.601171 CTTGAGGGAGTGAGGCTGG 59.399 63.158 0.00 0.00 0.00 4.85
3896 4896 1.967066 CTCACGATAGAAGGGGAGCAT 59.033 52.381 0.00 0.00 41.38 3.79
3968 4968 2.948979 GGTGATGATGGTCGGCATAAAA 59.051 45.455 0.00 0.00 0.00 1.52
3972 4972 3.342377 TGATGGTCGGCATAAAACTCA 57.658 42.857 0.00 0.00 0.00 3.41
3987 4987 8.830580 GCATAAAACTCAAGCATGATACTAAGA 58.169 33.333 0.00 0.00 34.37 2.10
3989 4989 6.917217 AAACTCAAGCATGATACTAAGAGC 57.083 37.500 0.00 0.00 34.37 4.09
3990 4990 5.604758 ACTCAAGCATGATACTAAGAGCA 57.395 39.130 0.00 0.00 34.37 4.26
3991 4991 6.172136 ACTCAAGCATGATACTAAGAGCAT 57.828 37.500 0.00 0.00 34.37 3.79
3992 4992 6.222389 ACTCAAGCATGATACTAAGAGCATC 58.778 40.000 0.00 0.00 34.37 3.91
3993 4993 6.041865 ACTCAAGCATGATACTAAGAGCATCT 59.958 38.462 0.00 0.00 40.96 2.90
3994 4994 6.587226 CTCAAGCATGATACTAAGAGCATCTC 59.413 42.308 0.00 0.00 38.97 2.75
3995 4995 8.266322 CTCAAGCATGATACTAAGAGCATCTCC 61.266 44.444 0.00 0.00 38.97 3.71
4003 5003 3.805267 GAGCATCTCCAGCCGTTG 58.195 61.111 0.00 0.00 0.00 4.10
4023 5023 2.122989 CCTCTAGGGGGCGGCTAA 60.123 66.667 9.56 0.00 0.00 3.09
4024 5024 1.764854 CCTCTAGGGGGCGGCTAAA 60.765 63.158 9.56 0.00 0.00 1.85
4025 5025 1.342672 CCTCTAGGGGGCGGCTAAAA 61.343 60.000 9.56 0.00 0.00 1.52
4026 5026 0.765510 CTCTAGGGGGCGGCTAAAAT 59.234 55.000 9.56 0.00 0.00 1.82
4027 5027 0.763035 TCTAGGGGGCGGCTAAAATC 59.237 55.000 9.56 0.00 0.00 2.17
4028 5028 0.602905 CTAGGGGGCGGCTAAAATCG 60.603 60.000 9.56 0.00 0.00 3.34
4029 5029 1.339644 TAGGGGGCGGCTAAAATCGT 61.340 55.000 9.56 0.00 0.00 3.73
4030 5030 2.184830 GGGGGCGGCTAAAATCGTC 61.185 63.158 9.56 0.00 0.00 4.20
4031 5031 2.531376 GGGGCGGCTAAAATCGTCG 61.531 63.158 9.56 0.00 0.00 5.12
4034 5034 4.104143 CGGCTAAAATCGTCGCCT 57.896 55.556 0.00 0.00 40.34 5.52
4035 5035 1.636340 CGGCTAAAATCGTCGCCTG 59.364 57.895 0.00 0.00 40.34 4.85
4036 5036 1.762222 CGGCTAAAATCGTCGCCTGG 61.762 60.000 0.00 0.00 40.34 4.45
4037 5037 1.436983 GGCTAAAATCGTCGCCTGGG 61.437 60.000 0.00 0.00 39.42 4.45
4038 5038 1.436983 GCTAAAATCGTCGCCTGGGG 61.437 60.000 4.03 4.03 0.00 4.96
4039 5039 0.814010 CTAAAATCGTCGCCTGGGGG 60.814 60.000 11.17 0.78 0.00 5.40
4040 5040 1.555477 TAAAATCGTCGCCTGGGGGT 61.555 55.000 11.17 0.00 34.45 4.95
4041 5041 3.622060 AAATCGTCGCCTGGGGGTG 62.622 63.158 11.17 4.01 44.01 4.61
4055 5055 4.061949 GGTGACCCGGCGTAAAAA 57.938 55.556 6.01 0.00 0.00 1.94
4056 5056 1.871077 GGTGACCCGGCGTAAAAAG 59.129 57.895 6.01 0.00 0.00 2.27
4057 5057 0.886043 GGTGACCCGGCGTAAAAAGT 60.886 55.000 6.01 0.00 0.00 2.66
4058 5058 0.236449 GTGACCCGGCGTAAAAAGTG 59.764 55.000 6.01 0.00 0.00 3.16
4059 5059 0.885596 TGACCCGGCGTAAAAAGTGG 60.886 55.000 6.01 0.00 0.00 4.00
4060 5060 1.579964 GACCCGGCGTAAAAAGTGGG 61.580 60.000 6.01 0.00 42.50 4.61
4061 5061 2.564458 CCGGCGTAAAAAGTGGGC 59.436 61.111 6.01 0.00 0.00 5.36
4062 5062 2.564458 CGGCGTAAAAAGTGGGCC 59.436 61.111 0.00 0.00 40.36 5.80
4063 5063 1.969589 CGGCGTAAAAAGTGGGCCT 60.970 57.895 4.53 0.00 41.58 5.19
4064 5064 1.584495 GGCGTAAAAAGTGGGCCTG 59.416 57.895 4.53 0.00 40.59 4.85
4065 5065 1.584495 GCGTAAAAAGTGGGCCTGG 59.416 57.895 4.53 0.00 0.00 4.45
4066 5066 1.873270 GCGTAAAAAGTGGGCCTGGG 61.873 60.000 4.53 0.00 0.00 4.45
4067 5067 1.248101 CGTAAAAAGTGGGCCTGGGG 61.248 60.000 4.53 0.00 0.00 4.96
4126 5126 4.705110 AAAAATTAGGCAAACTTGGGCT 57.295 36.364 0.00 0.00 44.15 5.19
4127 5127 3.683365 AAATTAGGCAAACTTGGGCTG 57.317 42.857 2.37 0.00 41.71 4.85
4128 5128 2.603075 ATTAGGCAAACTTGGGCTGA 57.397 45.000 2.37 0.00 41.71 4.26
4129 5129 2.373335 TTAGGCAAACTTGGGCTGAA 57.627 45.000 2.37 0.00 41.71 3.02
4130 5130 2.373335 TAGGCAAACTTGGGCTGAAA 57.627 45.000 2.37 0.00 41.71 2.69
4131 5131 0.752658 AGGCAAACTTGGGCTGAAAC 59.247 50.000 0.00 0.00 39.98 2.78
4132 5132 0.463620 GGCAAACTTGGGCTGAAACA 59.536 50.000 0.00 0.00 0.00 2.83
4133 5133 1.070601 GGCAAACTTGGGCTGAAACAT 59.929 47.619 0.00 0.00 0.00 2.71
4134 5134 2.137523 GCAAACTTGGGCTGAAACATG 58.862 47.619 0.00 0.00 0.00 3.21
4135 5135 2.483538 GCAAACTTGGGCTGAAACATGT 60.484 45.455 0.00 0.00 0.00 3.21
4136 5136 3.383761 CAAACTTGGGCTGAAACATGTC 58.616 45.455 0.00 0.00 0.00 3.06
4137 5137 2.363306 ACTTGGGCTGAAACATGTCA 57.637 45.000 0.00 0.00 0.00 3.58
4138 5138 2.665165 ACTTGGGCTGAAACATGTCAA 58.335 42.857 0.00 0.00 0.00 3.18
4139 5139 3.233507 ACTTGGGCTGAAACATGTCAAT 58.766 40.909 0.00 0.00 0.00 2.57
4140 5140 3.642848 ACTTGGGCTGAAACATGTCAATT 59.357 39.130 0.00 0.00 0.00 2.32
4141 5141 4.101430 ACTTGGGCTGAAACATGTCAATTT 59.899 37.500 0.00 0.00 0.00 1.82
4142 5142 4.686191 TGGGCTGAAACATGTCAATTTT 57.314 36.364 0.00 0.00 0.00 1.82
4143 5143 4.630111 TGGGCTGAAACATGTCAATTTTC 58.370 39.130 0.00 0.00 0.00 2.29
4144 5144 3.674753 GGGCTGAAACATGTCAATTTTCG 59.325 43.478 0.00 0.00 32.83 3.46
4145 5145 3.674753 GGCTGAAACATGTCAATTTTCGG 59.325 43.478 0.00 5.23 38.25 4.30
4146 5146 4.298332 GCTGAAACATGTCAATTTTCGGT 58.702 39.130 14.52 0.00 37.75 4.69
4147 5147 5.457140 GCTGAAACATGTCAATTTTCGGTA 58.543 37.500 14.52 0.00 37.75 4.02
4148 5148 5.918011 GCTGAAACATGTCAATTTTCGGTAA 59.082 36.000 14.52 0.00 37.75 2.85
4149 5149 6.419413 GCTGAAACATGTCAATTTTCGGTAAA 59.581 34.615 14.52 0.00 37.75 2.01
4150 5150 7.566868 GCTGAAACATGTCAATTTTCGGTAAAC 60.567 37.037 14.52 0.00 37.75 2.01
4151 5151 7.484975 TGAAACATGTCAATTTTCGGTAAACT 58.515 30.769 0.00 0.00 32.83 2.66
4152 5152 7.976734 TGAAACATGTCAATTTTCGGTAAACTT 59.023 29.630 0.00 0.00 32.83 2.66
4153 5153 7.692908 AACATGTCAATTTTCGGTAAACTTG 57.307 32.000 0.00 0.00 36.87 3.16
4154 5154 6.212955 ACATGTCAATTTTCGGTAAACTTGG 58.787 36.000 0.00 0.00 36.44 3.61
4155 5155 5.189659 TGTCAATTTTCGGTAAACTTGGG 57.810 39.130 0.00 0.00 36.44 4.12
4156 5156 3.985279 GTCAATTTTCGGTAAACTTGGGC 59.015 43.478 0.00 0.00 36.44 5.36
4157 5157 3.892588 TCAATTTTCGGTAAACTTGGGCT 59.107 39.130 0.00 0.00 36.44 5.19
4158 5158 4.342665 TCAATTTTCGGTAAACTTGGGCTT 59.657 37.500 0.00 0.00 36.44 4.35
4159 5159 4.948341 ATTTTCGGTAAACTTGGGCTTT 57.052 36.364 0.00 0.00 0.00 3.51
4160 5160 4.739587 TTTTCGGTAAACTTGGGCTTTT 57.260 36.364 0.00 0.00 0.00 2.27
4161 5161 5.848833 TTTTCGGTAAACTTGGGCTTTTA 57.151 34.783 0.00 0.00 0.00 1.52
4162 5162 6.408107 TTTTCGGTAAACTTGGGCTTTTAT 57.592 33.333 0.00 0.00 0.00 1.40
4163 5163 7.521871 TTTTCGGTAAACTTGGGCTTTTATA 57.478 32.000 0.00 0.00 0.00 0.98
4164 5164 7.706100 TTTCGGTAAACTTGGGCTTTTATAT 57.294 32.000 0.00 0.00 0.00 0.86
4165 5165 7.706100 TTCGGTAAACTTGGGCTTTTATATT 57.294 32.000 0.00 0.00 0.00 1.28
4166 5166 7.324354 TCGGTAAACTTGGGCTTTTATATTC 57.676 36.000 0.00 0.00 0.00 1.75
4167 5167 6.037391 TCGGTAAACTTGGGCTTTTATATTCG 59.963 38.462 0.00 0.00 0.00 3.34
4168 5168 5.975344 GGTAAACTTGGGCTTTTATATTCGC 59.025 40.000 0.00 0.00 0.00 4.70
4169 5169 5.652994 AAACTTGGGCTTTTATATTCGCA 57.347 34.783 0.00 0.00 0.00 5.10
4170 5170 5.652994 AACTTGGGCTTTTATATTCGCAA 57.347 34.783 0.00 0.00 0.00 4.85
4171 5171 5.652994 ACTTGGGCTTTTATATTCGCAAA 57.347 34.783 0.00 0.00 32.38 3.68
4172 5172 5.407502 ACTTGGGCTTTTATATTCGCAAAC 58.592 37.500 0.00 0.00 32.38 2.93
4173 5173 5.185056 ACTTGGGCTTTTATATTCGCAAACT 59.815 36.000 0.00 0.00 32.38 2.66
4174 5174 5.652994 TGGGCTTTTATATTCGCAAACTT 57.347 34.783 0.00 0.00 0.00 2.66
4175 5175 5.406649 TGGGCTTTTATATTCGCAAACTTG 58.593 37.500 0.00 0.00 0.00 3.16
4176 5176 4.803613 GGGCTTTTATATTCGCAAACTTGG 59.196 41.667 0.00 0.00 0.00 3.61
4177 5177 4.803613 GGCTTTTATATTCGCAAACTTGGG 59.196 41.667 0.27 0.27 41.90 4.12
4178 5178 4.267690 GCTTTTATATTCGCAAACTTGGGC 59.732 41.667 1.82 0.00 40.52 5.36
4179 5179 5.650543 CTTTTATATTCGCAAACTTGGGCT 58.349 37.500 1.82 0.00 40.52 5.19
4180 5180 6.679392 GCTTTTATATTCGCAAACTTGGGCTA 60.679 38.462 1.82 0.00 40.52 3.93
4181 5181 6.761099 TTTATATTCGCAAACTTGGGCTAA 57.239 33.333 1.82 0.00 40.52 3.09
4182 5182 6.761099 TTATATTCGCAAACTTGGGCTAAA 57.239 33.333 1.82 0.00 40.52 1.85
4183 5183 5.652994 ATATTCGCAAACTTGGGCTAAAA 57.347 34.783 1.82 0.00 40.52 1.52
4184 5184 2.785713 TCGCAAACTTGGGCTAAAAC 57.214 45.000 1.82 0.00 40.52 2.43
4185 5185 2.025155 TCGCAAACTTGGGCTAAAACA 58.975 42.857 1.82 0.00 40.52 2.83
4186 5186 2.124122 CGCAAACTTGGGCTAAAACAC 58.876 47.619 0.00 0.00 34.31 3.32
4187 5187 2.124122 GCAAACTTGGGCTAAAACACG 58.876 47.619 0.00 0.00 0.00 4.49
4188 5188 2.480587 GCAAACTTGGGCTAAAACACGT 60.481 45.455 0.00 0.00 0.00 4.49
4189 5189 3.368495 CAAACTTGGGCTAAAACACGTC 58.632 45.455 0.00 0.00 0.00 4.34
4190 5190 2.335316 ACTTGGGCTAAAACACGTCA 57.665 45.000 0.00 0.00 0.00 4.35
4191 5191 2.858745 ACTTGGGCTAAAACACGTCAT 58.141 42.857 0.00 0.00 0.00 3.06
4192 5192 3.219281 ACTTGGGCTAAAACACGTCATT 58.781 40.909 0.00 0.00 0.00 2.57
4193 5193 3.004315 ACTTGGGCTAAAACACGTCATTG 59.996 43.478 0.00 0.00 0.00 2.82
4194 5194 1.268352 TGGGCTAAAACACGTCATTGC 59.732 47.619 0.00 0.00 0.00 3.56
4195 5195 1.268352 GGGCTAAAACACGTCATTGCA 59.732 47.619 0.00 0.00 0.00 4.08
4196 5196 2.094752 GGGCTAAAACACGTCATTGCAT 60.095 45.455 0.00 0.00 0.00 3.96
4197 5197 3.127895 GGGCTAAAACACGTCATTGCATA 59.872 43.478 0.00 0.00 0.00 3.14
4198 5198 4.202010 GGGCTAAAACACGTCATTGCATAT 60.202 41.667 0.00 0.00 0.00 1.78
4199 5199 5.008217 GGGCTAAAACACGTCATTGCATATA 59.992 40.000 0.00 0.00 0.00 0.86
4200 5200 6.459024 GGGCTAAAACACGTCATTGCATATAA 60.459 38.462 0.00 0.00 0.00 0.98
4201 5201 6.970043 GGCTAAAACACGTCATTGCATATAAA 59.030 34.615 0.00 0.00 0.00 1.40
4202 5202 7.486551 GGCTAAAACACGTCATTGCATATAAAA 59.513 33.333 0.00 0.00 0.00 1.52
4203 5203 8.855279 GCTAAAACACGTCATTGCATATAAAAA 58.145 29.630 0.00 0.00 0.00 1.94
4205 5205 8.810652 AAAACACGTCATTGCATATAAAAACT 57.189 26.923 0.00 0.00 0.00 2.66
4206 5206 9.900710 AAAACACGTCATTGCATATAAAAACTA 57.099 25.926 0.00 0.00 0.00 2.24
4207 5207 9.554724 AAACACGTCATTGCATATAAAAACTAG 57.445 29.630 0.00 0.00 0.00 2.57
4208 5208 8.263940 ACACGTCATTGCATATAAAAACTAGT 57.736 30.769 0.00 0.00 0.00 2.57
4209 5209 8.388103 ACACGTCATTGCATATAAAAACTAGTC 58.612 33.333 0.00 0.00 0.00 2.59
4210 5210 8.387354 CACGTCATTGCATATAAAAACTAGTCA 58.613 33.333 0.00 0.00 0.00 3.41
4211 5211 8.941977 ACGTCATTGCATATAAAAACTAGTCAA 58.058 29.630 0.00 0.00 0.00 3.18
4212 5212 9.767684 CGTCATTGCATATAAAAACTAGTCAAA 57.232 29.630 0.00 0.00 0.00 2.69
4233 5233 3.722728 AAAAACTTGCTGAAGGCTGAG 57.277 42.857 0.00 0.00 42.39 3.35
4234 5234 2.645838 AAACTTGCTGAAGGCTGAGA 57.354 45.000 0.00 0.00 42.39 3.27
4235 5235 2.645838 AACTTGCTGAAGGCTGAGAA 57.354 45.000 0.00 0.00 42.39 2.87
4236 5236 2.181954 ACTTGCTGAAGGCTGAGAAG 57.818 50.000 0.00 0.00 42.39 2.85
4237 5237 1.419387 ACTTGCTGAAGGCTGAGAAGT 59.581 47.619 0.00 0.00 42.39 3.01
4238 5238 2.075338 CTTGCTGAAGGCTGAGAAGTC 58.925 52.381 0.00 0.00 42.39 3.01
4239 5239 0.037882 TGCTGAAGGCTGAGAAGTCG 60.038 55.000 0.00 0.00 42.39 4.18
4240 5240 1.357991 GCTGAAGGCTGAGAAGTCGC 61.358 60.000 0.00 0.00 38.06 5.19
4241 5241 0.739112 CTGAAGGCTGAGAAGTCGCC 60.739 60.000 0.00 0.00 40.56 5.54
4242 5242 1.807573 GAAGGCTGAGAAGTCGCCG 60.808 63.158 0.00 0.00 43.21 6.46
4243 5243 2.493907 GAAGGCTGAGAAGTCGCCGT 62.494 60.000 0.00 0.00 43.21 5.68
4244 5244 2.493907 AAGGCTGAGAAGTCGCCGTC 62.494 60.000 0.00 0.00 43.21 4.79
4245 5245 2.876645 GCTGAGAAGTCGCCGTCG 60.877 66.667 0.00 0.00 0.00 5.12
4246 5246 2.561885 CTGAGAAGTCGCCGTCGT 59.438 61.111 0.00 0.00 36.96 4.34
4247 5247 1.512310 CTGAGAAGTCGCCGTCGTC 60.512 63.158 0.00 0.00 36.96 4.20
4248 5248 2.573689 GAGAAGTCGCCGTCGTCG 60.574 66.667 0.00 0.00 36.96 5.12
4249 5249 4.755614 AGAAGTCGCCGTCGTCGC 62.756 66.667 0.00 0.00 36.96 5.19
4269 5269 2.107141 CCATCGTCGGCCTTCTCC 59.893 66.667 0.00 0.00 0.00 3.71
4270 5270 2.427245 CCATCGTCGGCCTTCTCCT 61.427 63.158 0.00 0.00 0.00 3.69
4271 5271 1.066587 CATCGTCGGCCTTCTCCTC 59.933 63.158 0.00 0.00 0.00 3.71
4272 5272 2.128507 ATCGTCGGCCTTCTCCTCC 61.129 63.158 0.00 0.00 0.00 4.30
4273 5273 2.575455 ATCGTCGGCCTTCTCCTCCT 62.575 60.000 0.00 0.00 0.00 3.69
4274 5274 2.352032 CGTCGGCCTTCTCCTCCTT 61.352 63.158 0.00 0.00 0.00 3.36
4275 5275 1.219393 GTCGGCCTTCTCCTCCTTG 59.781 63.158 0.00 0.00 0.00 3.61
4276 5276 1.078528 TCGGCCTTCTCCTCCTTGA 59.921 57.895 0.00 0.00 0.00 3.02
4277 5277 1.219393 CGGCCTTCTCCTCCTTGAC 59.781 63.158 0.00 0.00 0.00 3.18
4278 5278 1.261238 CGGCCTTCTCCTCCTTGACT 61.261 60.000 0.00 0.00 0.00 3.41
4279 5279 0.539518 GGCCTTCTCCTCCTTGACTC 59.460 60.000 0.00 0.00 0.00 3.36
4280 5280 0.174617 GCCTTCTCCTCCTTGACTCG 59.825 60.000 0.00 0.00 0.00 4.18
4281 5281 0.820871 CCTTCTCCTCCTTGACTCGG 59.179 60.000 0.00 0.00 0.00 4.63
4282 5282 0.820871 CTTCTCCTCCTTGACTCGGG 59.179 60.000 0.00 0.00 0.00 5.14
4283 5283 1.258445 TTCTCCTCCTTGACTCGGGC 61.258 60.000 0.00 0.00 0.00 6.13
4284 5284 3.068691 TCCTCCTTGACTCGGGCG 61.069 66.667 0.00 0.00 0.00 6.13
4285 5285 4.821589 CCTCCTTGACTCGGGCGC 62.822 72.222 0.00 0.00 0.00 6.53
4286 5286 4.821589 CTCCTTGACTCGGGCGCC 62.822 72.222 21.18 21.18 0.00 6.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.733956 CCCATAAGCAGGGTAAAAGCA 58.266 47.619 0.00 0.00 41.61 3.91
11 12 2.505819 ACCAGAGTTACCCATAAGCAGG 59.494 50.000 0.00 0.00 0.00 4.85
12 13 3.914426 ACCAGAGTTACCCATAAGCAG 57.086 47.619 0.00 0.00 0.00 4.24
13 14 3.872240 GCAACCAGAGTTACCCATAAGCA 60.872 47.826 0.00 0.00 33.27 3.91
14 15 2.683362 GCAACCAGAGTTACCCATAAGC 59.317 50.000 0.00 0.00 33.27 3.09
15 16 2.936498 CGCAACCAGAGTTACCCATAAG 59.064 50.000 0.00 0.00 33.27 1.73
16 17 2.937873 GCGCAACCAGAGTTACCCATAA 60.938 50.000 0.30 0.00 33.27 1.90
17 18 1.406341 GCGCAACCAGAGTTACCCATA 60.406 52.381 0.30 0.00 33.27 2.74
18 19 0.676782 GCGCAACCAGAGTTACCCAT 60.677 55.000 0.30 0.00 33.27 4.00
19 20 1.302192 GCGCAACCAGAGTTACCCA 60.302 57.895 0.30 0.00 33.27 4.51
20 21 1.003718 AGCGCAACCAGAGTTACCC 60.004 57.895 11.47 0.00 33.27 3.69
21 22 0.037232 AGAGCGCAACCAGAGTTACC 60.037 55.000 11.47 0.00 33.27 2.85
22 23 2.094649 AGTAGAGCGCAACCAGAGTTAC 60.095 50.000 11.47 1.12 33.27 2.50
23 24 2.168496 AGTAGAGCGCAACCAGAGTTA 58.832 47.619 11.47 0.00 33.27 2.24
24 25 0.969894 AGTAGAGCGCAACCAGAGTT 59.030 50.000 11.47 0.00 36.33 3.01
25 26 0.969894 AAGTAGAGCGCAACCAGAGT 59.030 50.000 11.47 0.00 0.00 3.24
26 27 1.203523 AGAAGTAGAGCGCAACCAGAG 59.796 52.381 11.47 0.00 0.00 3.35
27 28 1.257743 AGAAGTAGAGCGCAACCAGA 58.742 50.000 11.47 0.00 0.00 3.86
28 29 2.941453 TAGAAGTAGAGCGCAACCAG 57.059 50.000 11.47 0.00 0.00 4.00
29 30 4.679662 GTTATAGAAGTAGAGCGCAACCA 58.320 43.478 11.47 0.00 0.00 3.67
30 31 3.729716 CGTTATAGAAGTAGAGCGCAACC 59.270 47.826 11.47 0.00 0.00 3.77
31 32 3.729716 CCGTTATAGAAGTAGAGCGCAAC 59.270 47.826 11.47 4.59 0.00 4.17
32 33 3.379372 ACCGTTATAGAAGTAGAGCGCAA 59.621 43.478 11.47 0.00 0.00 4.85
33 34 2.947652 ACCGTTATAGAAGTAGAGCGCA 59.052 45.455 11.47 0.00 0.00 6.09
34 35 3.298317 CACCGTTATAGAAGTAGAGCGC 58.702 50.000 0.00 0.00 0.00 5.92
35 36 3.314635 ACCACCGTTATAGAAGTAGAGCG 59.685 47.826 0.00 0.00 0.00 5.03
36 37 4.579753 AGACCACCGTTATAGAAGTAGAGC 59.420 45.833 0.00 0.00 0.00 4.09
37 38 7.982761 ATAGACCACCGTTATAGAAGTAGAG 57.017 40.000 0.00 0.00 0.00 2.43
41 42 9.760077 CAAAATATAGACCACCGTTATAGAAGT 57.240 33.333 0.00 0.00 0.00 3.01
42 43 9.204570 CCAAAATATAGACCACCGTTATAGAAG 57.795 37.037 0.00 0.00 0.00 2.85
43 44 8.707449 ACCAAAATATAGACCACCGTTATAGAA 58.293 33.333 0.00 0.00 0.00 2.10
44 45 8.253867 ACCAAAATATAGACCACCGTTATAGA 57.746 34.615 0.00 0.00 0.00 1.98
45 46 8.770828 CAACCAAAATATAGACCACCGTTATAG 58.229 37.037 0.00 0.00 0.00 1.31
46 47 8.266473 ACAACCAAAATATAGACCACCGTTATA 58.734 33.333 0.00 0.00 0.00 0.98
47 48 7.066525 CACAACCAAAATATAGACCACCGTTAT 59.933 37.037 0.00 0.00 0.00 1.89
58 59 7.148755 GCAGAACAAAGCACAACCAAAATATAG 60.149 37.037 0.00 0.00 0.00 1.31
76 77 1.064017 ACCACCAAAGAGGCAGAACAA 60.064 47.619 0.00 0.00 43.14 2.83
118 141 2.043411 GCAATGTACAACAACAGCACG 58.957 47.619 0.00 0.00 31.70 5.34
123 146 2.542618 CGCCAAGCAATGTACAACAACA 60.543 45.455 0.00 0.00 0.00 3.33
137 160 1.321743 CGATATCGAATAGCGCCAAGC 59.678 52.381 20.50 0.00 44.25 4.01
190 214 9.702253 AGAACTACATCTACATCTAAGAGGAAA 57.298 33.333 0.00 0.00 0.00 3.13
191 215 9.126151 CAGAACTACATCTACATCTAAGAGGAA 57.874 37.037 0.00 0.00 0.00 3.36
192 216 7.229707 GCAGAACTACATCTACATCTAAGAGGA 59.770 40.741 0.00 0.00 0.00 3.71
193 217 7.013750 TGCAGAACTACATCTACATCTAAGAGG 59.986 40.741 0.00 0.00 0.00 3.69
194 218 7.935520 TGCAGAACTACATCTACATCTAAGAG 58.064 38.462 0.00 0.00 0.00 2.85
195 219 7.558081 ACTGCAGAACTACATCTACATCTAAGA 59.442 37.037 23.35 0.00 0.00 2.10
196 220 7.711846 ACTGCAGAACTACATCTACATCTAAG 58.288 38.462 23.35 0.00 0.00 2.18
197 221 7.646548 ACTGCAGAACTACATCTACATCTAA 57.353 36.000 23.35 0.00 0.00 2.10
198 222 7.122799 ACAACTGCAGAACTACATCTACATCTA 59.877 37.037 23.35 0.00 0.00 1.98
199 223 6.071108 ACAACTGCAGAACTACATCTACATCT 60.071 38.462 23.35 0.00 0.00 2.90
200 224 6.035435 CACAACTGCAGAACTACATCTACATC 59.965 42.308 23.35 0.00 0.00 3.06
201 225 5.871524 CACAACTGCAGAACTACATCTACAT 59.128 40.000 23.35 0.00 0.00 2.29
202 226 5.221441 ACACAACTGCAGAACTACATCTACA 60.221 40.000 23.35 0.00 0.00 2.74
203 227 5.230942 ACACAACTGCAGAACTACATCTAC 58.769 41.667 23.35 0.00 0.00 2.59
204 228 5.468540 ACACAACTGCAGAACTACATCTA 57.531 39.130 23.35 0.00 0.00 1.98
205 229 4.342862 ACACAACTGCAGAACTACATCT 57.657 40.909 23.35 0.00 0.00 2.90
206 230 4.776743 CAACACAACTGCAGAACTACATC 58.223 43.478 23.35 0.00 0.00 3.06
207 231 3.003689 GCAACACAACTGCAGAACTACAT 59.996 43.478 23.35 0.00 39.69 2.29
208 232 2.354510 GCAACACAACTGCAGAACTACA 59.645 45.455 23.35 0.00 39.69 2.74
209 233 2.354510 TGCAACACAACTGCAGAACTAC 59.645 45.455 23.35 2.35 44.67 2.73
210 234 2.637947 TGCAACACAACTGCAGAACTA 58.362 42.857 23.35 0.00 44.67 2.24
211 235 1.462616 TGCAACACAACTGCAGAACT 58.537 45.000 23.35 0.71 44.67 3.01
223 247 3.084039 TGGAAGGATGAGAATGCAACAC 58.916 45.455 0.00 0.00 0.00 3.32
241 265 6.430308 AGATTAATAGCTAGACGAATCGTGGA 59.570 38.462 14.87 0.00 41.37 4.02
259 283 6.311445 GCGACACCATATCGAATCAGATTAAT 59.689 38.462 0.00 0.00 42.25 1.40
299 331 3.198489 GCAGGTTCTAGCCGCTGC 61.198 66.667 2.16 0.00 37.95 5.25
315 347 1.088910 GCAGAGTAGCCAAGCTCAGC 61.089 60.000 0.00 0.00 40.44 4.26
342 374 2.050144 CAGATTCCCTAGCCTGGCTTA 58.950 52.381 28.55 11.74 40.44 3.09
385 432 3.917760 CGGAGGTCGAGGGATGGC 61.918 72.222 0.00 0.00 42.43 4.40
386 433 2.123854 TCGGAGGTCGAGGGATGG 60.124 66.667 0.00 0.00 43.74 3.51
540 593 2.258748 TTTGTGCACGTGGTCCCTCA 62.259 55.000 18.88 2.06 0.00 3.86
573 626 5.344884 GGAAGAGAAAGATGGAACTAGACG 58.655 45.833 0.00 0.00 0.00 4.18
589 642 2.840651 GGTCCAGATTTCAGGGAAGAGA 59.159 50.000 0.00 0.00 31.32 3.10
626 679 3.554544 CGATCTGATCCAGGGTGAGATTG 60.555 52.174 2.76 2.43 31.51 2.67
651 704 2.762887 CTCAGTTCATGCTGACTAGGGA 59.237 50.000 0.00 0.00 40.23 4.20
671 724 5.128171 TGTGAATATAGGAGTGGTTTACGCT 59.872 40.000 0.00 0.00 44.13 5.07
672 725 5.233689 GTGTGAATATAGGAGTGGTTTACGC 59.766 44.000 0.00 0.00 0.00 4.42
673 726 6.334989 TGTGTGAATATAGGAGTGGTTTACG 58.665 40.000 0.00 0.00 0.00 3.18
674 727 8.448615 GTTTGTGTGAATATAGGAGTGGTTTAC 58.551 37.037 0.00 0.00 0.00 2.01
675 728 8.158132 TGTTTGTGTGAATATAGGAGTGGTTTA 58.842 33.333 0.00 0.00 0.00 2.01
676 729 7.001674 TGTTTGTGTGAATATAGGAGTGGTTT 58.998 34.615 0.00 0.00 0.00 3.27
677 730 6.539173 TGTTTGTGTGAATATAGGAGTGGTT 58.461 36.000 0.00 0.00 0.00 3.67
678 731 6.121776 TGTTTGTGTGAATATAGGAGTGGT 57.878 37.500 0.00 0.00 0.00 4.16
679 732 6.128007 GGTTGTTTGTGTGAATATAGGAGTGG 60.128 42.308 0.00 0.00 0.00 4.00
680 733 6.402118 CGGTTGTTTGTGTGAATATAGGAGTG 60.402 42.308 0.00 0.00 0.00 3.51
681 734 5.642063 CGGTTGTTTGTGTGAATATAGGAGT 59.358 40.000 0.00 0.00 0.00 3.85
858 945 3.491598 GAGGTGGTGGTGGTGGTGG 62.492 68.421 0.00 0.00 0.00 4.61
860 947 3.175710 GGAGGTGGTGGTGGTGGT 61.176 66.667 0.00 0.00 0.00 4.16
861 948 3.966543 GGGAGGTGGTGGTGGTGG 61.967 72.222 0.00 0.00 0.00 4.61
862 949 4.329545 CGGGAGGTGGTGGTGGTG 62.330 72.222 0.00 0.00 0.00 4.17
863 950 4.892291 ACGGGAGGTGGTGGTGGT 62.892 66.667 0.00 0.00 0.00 4.16
994 1093 2.275418 GGCCGGGTCCATGTTGAT 59.725 61.111 2.18 0.00 0.00 2.57
1373 1476 3.077907 CAGGGGGTGGTGGTAGTG 58.922 66.667 0.00 0.00 0.00 2.74
1374 1477 2.933834 GCAGGGGGTGGTGGTAGT 60.934 66.667 0.00 0.00 0.00 2.73
1375 1478 2.198304 GAAGCAGGGGGTGGTGGTAG 62.198 65.000 0.00 0.00 36.83 3.18
1397 1502 2.890945 ACCACAAATTCGAAAGGGAAGG 59.109 45.455 0.00 3.16 0.00 3.46
1473 1601 4.063689 TGGTTGTTTGCAGCAATTAATGG 58.936 39.130 9.12 0.00 0.00 3.16
1519 1661 0.040204 CTCCCAGGCCCTTTGATTGT 59.960 55.000 0.00 0.00 0.00 2.71
1522 1664 1.566231 CTTACTCCCAGGCCCTTTGAT 59.434 52.381 0.00 0.00 0.00 2.57
1524 1666 0.991920 TCTTACTCCCAGGCCCTTTG 59.008 55.000 0.00 0.00 0.00 2.77
1533 1675 3.838565 CTCTGGCTAGATCTTACTCCCA 58.161 50.000 0.00 0.12 31.21 4.37
1568 1710 7.321745 ACCATTTTAGCTAGCAAGAACATAC 57.678 36.000 18.83 0.00 0.00 2.39
1578 1720 2.785679 CGCACAACCATTTTAGCTAGC 58.214 47.619 6.62 6.62 0.00 3.42
1592 1734 1.135915 ACAACCATCAAAAGCGCACAA 59.864 42.857 11.47 0.00 0.00 3.33
1603 1745 2.229543 GCTCTCAAATGCACAACCATCA 59.770 45.455 0.00 0.00 0.00 3.07
1607 1749 0.874390 TCGCTCTCAAATGCACAACC 59.126 50.000 0.00 0.00 0.00 3.77
1639 1785 4.297299 TCTTCGTCAAACTACGTTCAGT 57.703 40.909 0.00 0.00 43.31 3.41
1657 1803 3.267812 TCTGCCTCCCATTTCATCTTCTT 59.732 43.478 0.00 0.00 0.00 2.52
1705 1851 6.376864 ACATCCCATAAATGAACACATCGAAA 59.623 34.615 0.00 0.00 0.00 3.46
1759 1919 7.164122 TCTGAGCTTTCAGTATCTCACAAATT 58.836 34.615 3.17 0.00 38.75 1.82
1836 2001 4.131596 TGGTTCCAACTTGCAACTAGTAC 58.868 43.478 0.00 0.00 0.00 2.73
1837 2002 4.425180 TGGTTCCAACTTGCAACTAGTA 57.575 40.909 0.00 0.00 0.00 1.82
1838 2003 3.290948 TGGTTCCAACTTGCAACTAGT 57.709 42.857 0.00 0.00 0.00 2.57
1839 2004 3.569701 ACATGGTTCCAACTTGCAACTAG 59.430 43.478 0.00 0.00 0.00 2.57
1889 2054 3.674997 TCCAGTTTCCTACAACATGCTC 58.325 45.455 0.00 0.00 0.00 4.26
1896 2061 3.659786 CACACGATCCAGTTTCCTACAA 58.340 45.455 0.00 0.00 0.00 2.41
1905 2070 1.308069 GCATTGGCACACGATCCAGT 61.308 55.000 0.00 0.00 39.29 4.00
1907 2072 3.589579 GCATTGGCACACGATCCA 58.410 55.556 0.00 0.00 39.29 3.41
1956 2124 3.996480 AGTCAAGTTAGCTCCACAAGAC 58.004 45.455 0.00 1.20 0.00 3.01
1977 2146 5.390387 AGGGCAGATTTACAAAACCAACTA 58.610 37.500 0.00 0.00 0.00 2.24
1998 2167 2.462456 ACATACAGCACACACAGAGG 57.538 50.000 0.00 0.00 0.00 3.69
2030 2206 6.937436 TGTAGTTCTCGACAGCTATAATCA 57.063 37.500 0.00 0.00 0.00 2.57
2164 2340 2.496070 TCGGATGACCTTGGAACTACAG 59.504 50.000 0.00 0.00 0.00 2.74
2183 2359 5.750547 TCTCAGCTGCTTGATTACTTAATCG 59.249 40.000 9.47 0.00 43.80 3.34
2335 2552 2.708386 ACGCTCGTAAGCTCATATCC 57.292 50.000 0.00 0.00 46.91 2.59
2348 2565 1.352156 GCAGTAGTTCCCAACGCTCG 61.352 60.000 0.00 0.00 36.23 5.03
2352 2569 2.616842 ACAAAAGCAGTAGTTCCCAACG 59.383 45.455 0.00 0.00 36.23 4.10
2359 2640 5.971202 CGAAATGAACACAAAAGCAGTAGTT 59.029 36.000 0.00 0.00 0.00 2.24
2434 2721 1.196127 GCTTGCCAAGTTACGGTACAC 59.804 52.381 6.28 0.00 0.00 2.90
2439 2726 3.773117 CTTGCTTGCCAAGTTACGG 57.227 52.632 6.28 0.00 44.74 4.02
2458 2770 2.590821 AGGCAAAACAGAGTGAATGCT 58.409 42.857 0.00 0.00 34.37 3.79
2475 2788 4.759516 TTTAAATCGACCAGTCAAAGGC 57.240 40.909 0.00 0.00 0.00 4.35
2484 2797 6.687081 ACTCACAAAGTTTTAAATCGACCA 57.313 33.333 0.00 0.00 33.03 4.02
2487 2800 9.268268 ACATCTACTCACAAAGTTTTAAATCGA 57.732 29.630 0.00 0.00 39.55 3.59
2562 2878 4.559862 AGGCTGTAATTCAACACTAGCT 57.440 40.909 0.00 0.00 0.00 3.32
2671 2991 6.402981 AGGGGAATACTGAAAATACTTGGT 57.597 37.500 0.00 0.00 0.00 3.67
2882 3257 1.180029 TTCTTTACGGAGGTCGGAGG 58.820 55.000 0.00 0.00 44.45 4.30
2883 3258 3.521947 ATTTCTTTACGGAGGTCGGAG 57.478 47.619 0.00 0.00 44.45 4.63
2884 3259 6.491062 TCATATATTTCTTTACGGAGGTCGGA 59.509 38.462 0.00 0.00 44.45 4.55
2886 3261 7.650504 TGTTCATATATTTCTTTACGGAGGTCG 59.349 37.037 0.00 0.00 45.88 4.79
2887 3262 8.882415 TGTTCATATATTTCTTTACGGAGGTC 57.118 34.615 0.00 0.00 0.00 3.85
2955 3334 6.315714 ACTGCAAATAGCTACTCCCTCTATA 58.684 40.000 0.00 0.00 45.94 1.31
2967 3346 4.460731 GGAAGAAGGAAACTGCAAATAGCT 59.539 41.667 0.00 0.00 45.94 3.32
3003 3382 3.963428 ACTCACAGGTAAGCAGGTAAG 57.037 47.619 0.00 0.00 0.00 2.34
3004 3383 3.244422 CCAACTCACAGGTAAGCAGGTAA 60.244 47.826 0.00 0.00 0.00 2.85
3023 3402 5.398603 TGAAGAAGAAAAACAGCAACCAA 57.601 34.783 0.00 0.00 0.00 3.67
3052 3435 6.373779 CATTACCGAGGATATTTTGATGCAC 58.626 40.000 0.00 0.00 0.00 4.57
3082 3465 9.424319 GTGAATACAAGTCTAAGAATGTGAGAA 57.576 33.333 0.00 0.00 0.00 2.87
3094 3477 9.317936 CAGCTATCAAATGTGAATACAAGTCTA 57.682 33.333 0.00 0.00 40.84 2.59
3095 3478 7.281774 CCAGCTATCAAATGTGAATACAAGTCT 59.718 37.037 0.00 0.00 40.84 3.24
3097 3480 6.319658 CCCAGCTATCAAATGTGAATACAAGT 59.680 38.462 0.00 0.00 40.84 3.16
3106 3489 3.713288 CAATGCCCAGCTATCAAATGTG 58.287 45.455 0.00 0.00 0.00 3.21
3107 3490 2.101917 GCAATGCCCAGCTATCAAATGT 59.898 45.455 0.00 0.00 0.00 2.71
3122 3508 3.129871 TGTAAGCAAACCAAAGCAATGC 58.870 40.909 0.00 0.00 37.28 3.56
3183 3569 2.844451 GCCAAAGCTTGTGCCGACA 61.844 57.895 0.00 0.00 40.80 4.35
3240 3626 0.104487 TGTACGCCTTGTCAACGGAA 59.896 50.000 5.53 0.00 0.00 4.30
3246 3632 3.258372 AGAGAAGAATGTACGCCTTGTCA 59.742 43.478 15.80 0.00 34.03 3.58
3379 3765 1.213013 CACTTGCTACCGTCGAGCT 59.787 57.895 7.37 0.00 40.76 4.09
3389 3775 2.897326 TCTCCACTGCTTACACTTGCTA 59.103 45.455 0.00 0.00 0.00 3.49
3488 3874 1.004044 AGCTTTGCAGGTCAGCAGTAT 59.996 47.619 10.70 0.00 46.54 2.12
3503 3889 7.498570 GGATGTAAAATGAGATCTGAGAGCTTT 59.501 37.037 0.20 0.00 0.00 3.51
3520 3906 1.276989 ACCGGCTCGAAGGATGTAAAA 59.723 47.619 0.00 0.00 0.00 1.52
3656 4403 0.243636 GGCTGGTGGCAAATGTGTAC 59.756 55.000 0.00 0.00 44.01 2.90
3661 4408 1.322538 GGGTAGGCTGGTGGCAAATG 61.323 60.000 0.00 0.00 44.01 2.32
3768 4766 5.925509 TCAACAGTAACTTTAGTCTGCCTT 58.074 37.500 0.00 0.00 0.00 4.35
3780 4779 7.066284 GCCTTATTGTCATCATCAACAGTAACT 59.934 37.037 0.00 0.00 0.00 2.24
3797 4796 6.371271 CGAATCCCAAAATTTTGCCTTATTGT 59.629 34.615 22.90 4.60 36.86 2.71
3847 4847 1.452108 CCTTCGGGGCAATGTCCTC 60.452 63.158 3.05 0.00 0.00 3.71
3896 4896 1.969923 CTCCAAGGGAATTTTGCACCA 59.030 47.619 0.00 0.00 0.00 4.17
3922 4922 3.050275 GGGTGGCGAACTCACAGC 61.050 66.667 0.00 0.00 36.90 4.40
3948 4948 3.627577 AGTTTTATGCCGACCATCATCAC 59.372 43.478 0.00 0.00 35.34 3.06
3968 4968 5.604758 TGCTCTTAGTATCATGCTTGAGT 57.395 39.130 8.40 0.00 34.73 3.41
3972 4972 5.306419 TGGAGATGCTCTTAGTATCATGCTT 59.694 40.000 7.58 0.00 39.41 3.91
4006 5006 1.342672 TTTTAGCCGCCCCCTAGAGG 61.343 60.000 0.00 0.00 0.00 3.69
4007 5007 0.765510 ATTTTAGCCGCCCCCTAGAG 59.234 55.000 0.00 0.00 0.00 2.43
4008 5008 0.763035 GATTTTAGCCGCCCCCTAGA 59.237 55.000 0.00 0.00 0.00 2.43
4009 5009 0.602905 CGATTTTAGCCGCCCCCTAG 60.603 60.000 0.00 0.00 0.00 3.02
4010 5010 1.339644 ACGATTTTAGCCGCCCCCTA 61.340 55.000 0.00 0.00 0.00 3.53
4011 5011 2.192175 CGATTTTAGCCGCCCCCT 59.808 61.111 0.00 0.00 0.00 4.79
4012 5012 2.124445 ACGATTTTAGCCGCCCCC 60.124 61.111 0.00 0.00 0.00 5.40
4013 5013 2.531376 CGACGATTTTAGCCGCCCC 61.531 63.158 0.00 0.00 0.00 5.80
4014 5014 3.011583 CGACGATTTTAGCCGCCC 58.988 61.111 0.00 0.00 0.00 6.13
4015 5015 2.323447 GCGACGATTTTAGCCGCC 59.677 61.111 0.00 0.00 39.97 6.13
4016 5016 2.323447 GGCGACGATTTTAGCCGC 59.677 61.111 0.00 0.00 44.45 6.53
4019 5019 1.436983 CCCCAGGCGACGATTTTAGC 61.437 60.000 0.00 0.00 0.00 3.09
4020 5020 0.814010 CCCCCAGGCGACGATTTTAG 60.814 60.000 0.00 0.00 0.00 1.85
4021 5021 1.222387 CCCCCAGGCGACGATTTTA 59.778 57.895 0.00 0.00 0.00 1.52
4022 5022 2.045340 CCCCCAGGCGACGATTTT 60.045 61.111 0.00 0.00 0.00 1.82
4023 5023 3.327404 ACCCCCAGGCGACGATTT 61.327 61.111 0.00 0.00 36.11 2.17
4024 5024 4.096003 CACCCCCAGGCGACGATT 62.096 66.667 0.00 0.00 36.11 3.34
4037 5037 1.579964 CTTTTTACGCCGGGTCACCC 61.580 60.000 1.06 1.06 41.09 4.61
4038 5038 0.886043 ACTTTTTACGCCGGGTCACC 60.886 55.000 2.18 0.00 0.00 4.02
4039 5039 0.236449 CACTTTTTACGCCGGGTCAC 59.764 55.000 2.18 0.00 0.00 3.67
4040 5040 0.885596 CCACTTTTTACGCCGGGTCA 60.886 55.000 2.18 0.00 0.00 4.02
4041 5041 1.579964 CCCACTTTTTACGCCGGGTC 61.580 60.000 2.18 0.00 0.00 4.46
4042 5042 1.601477 CCCACTTTTTACGCCGGGT 60.601 57.895 2.18 1.55 0.00 5.28
4043 5043 2.985117 GCCCACTTTTTACGCCGGG 61.985 63.158 2.18 0.00 36.71 5.73
4044 5044 2.564458 GCCCACTTTTTACGCCGG 59.436 61.111 0.00 0.00 0.00 6.13
4045 5045 1.969589 AGGCCCACTTTTTACGCCG 60.970 57.895 0.00 0.00 44.56 6.46
4046 5046 1.584495 CAGGCCCACTTTTTACGCC 59.416 57.895 0.00 0.00 40.03 5.68
4047 5047 1.584495 CCAGGCCCACTTTTTACGC 59.416 57.895 0.00 0.00 0.00 4.42
4048 5048 1.248101 CCCCAGGCCCACTTTTTACG 61.248 60.000 0.00 0.00 0.00 3.18
4049 5049 1.541310 GCCCCAGGCCCACTTTTTAC 61.541 60.000 0.00 0.00 44.06 2.01
4050 5050 1.229051 GCCCCAGGCCCACTTTTTA 60.229 57.895 0.00 0.00 44.06 1.52
4051 5051 2.526624 GCCCCAGGCCCACTTTTT 60.527 61.111 0.00 0.00 44.06 1.94
4086 5086 3.835790 TTTTCCACGTCTGGGGCCG 62.836 63.158 0.00 0.00 38.25 6.13
4087 5087 1.529713 TTTTTCCACGTCTGGGGCC 60.530 57.895 0.00 0.00 38.25 5.80
4088 5088 4.167597 TTTTTCCACGTCTGGGGC 57.832 55.556 0.00 0.00 38.25 5.80
4105 5105 4.102367 TCAGCCCAAGTTTGCCTAATTTTT 59.898 37.500 0.00 0.00 0.00 1.94
4106 5106 3.645687 TCAGCCCAAGTTTGCCTAATTTT 59.354 39.130 0.00 0.00 0.00 1.82
4107 5107 3.238597 TCAGCCCAAGTTTGCCTAATTT 58.761 40.909 0.00 0.00 0.00 1.82
4108 5108 2.888212 TCAGCCCAAGTTTGCCTAATT 58.112 42.857 0.00 0.00 0.00 1.40
4109 5109 2.603075 TCAGCCCAAGTTTGCCTAAT 57.397 45.000 0.00 0.00 0.00 1.73
4110 5110 2.364002 GTTTCAGCCCAAGTTTGCCTAA 59.636 45.455 0.00 0.00 0.00 2.69
4111 5111 1.960689 GTTTCAGCCCAAGTTTGCCTA 59.039 47.619 0.00 0.00 0.00 3.93
4112 5112 0.752658 GTTTCAGCCCAAGTTTGCCT 59.247 50.000 0.00 0.00 0.00 4.75
4113 5113 0.463620 TGTTTCAGCCCAAGTTTGCC 59.536 50.000 0.00 0.00 0.00 4.52
4114 5114 2.137523 CATGTTTCAGCCCAAGTTTGC 58.862 47.619 0.00 0.00 0.00 3.68
4115 5115 3.181477 TGACATGTTTCAGCCCAAGTTTG 60.181 43.478 0.00 0.00 0.00 2.93
4116 5116 3.030291 TGACATGTTTCAGCCCAAGTTT 58.970 40.909 0.00 0.00 0.00 2.66
4117 5117 2.665165 TGACATGTTTCAGCCCAAGTT 58.335 42.857 0.00 0.00 0.00 2.66
4118 5118 2.363306 TGACATGTTTCAGCCCAAGT 57.637 45.000 0.00 0.00 0.00 3.16
4119 5119 3.947910 ATTGACATGTTTCAGCCCAAG 57.052 42.857 0.00 0.00 0.00 3.61
4120 5120 4.686191 AAATTGACATGTTTCAGCCCAA 57.314 36.364 0.00 0.00 0.00 4.12
4121 5121 4.630111 GAAAATTGACATGTTTCAGCCCA 58.370 39.130 0.00 0.00 32.63 5.36
4122 5122 3.674753 CGAAAATTGACATGTTTCAGCCC 59.325 43.478 0.00 0.00 32.00 5.19
4123 5123 3.674753 CCGAAAATTGACATGTTTCAGCC 59.325 43.478 0.00 0.00 32.00 4.85
4124 5124 4.298332 ACCGAAAATTGACATGTTTCAGC 58.702 39.130 0.00 0.00 32.00 4.26
4125 5125 7.647715 AGTTTACCGAAAATTGACATGTTTCAG 59.352 33.333 0.00 0.00 32.00 3.02
4126 5126 7.484975 AGTTTACCGAAAATTGACATGTTTCA 58.515 30.769 0.00 0.00 32.00 2.69
4127 5127 7.924103 AGTTTACCGAAAATTGACATGTTTC 57.076 32.000 0.00 0.00 0.00 2.78
4136 5136 4.251543 AGCCCAAGTTTACCGAAAATTG 57.748 40.909 4.15 4.15 45.69 2.32
4137 5137 4.948341 AAGCCCAAGTTTACCGAAAATT 57.052 36.364 0.00 0.00 33.27 1.82
4138 5138 4.948341 AAAGCCCAAGTTTACCGAAAAT 57.052 36.364 0.00 0.00 0.00 1.82
4139 5139 4.739587 AAAAGCCCAAGTTTACCGAAAA 57.260 36.364 0.00 0.00 0.00 2.29
4140 5140 7.706100 ATATAAAAGCCCAAGTTTACCGAAA 57.294 32.000 0.00 0.00 0.00 3.46
4141 5141 7.414319 CGAATATAAAAGCCCAAGTTTACCGAA 60.414 37.037 0.00 0.00 0.00 4.30
4142 5142 6.037391 CGAATATAAAAGCCCAAGTTTACCGA 59.963 38.462 0.00 0.00 0.00 4.69
4143 5143 6.196571 CGAATATAAAAGCCCAAGTTTACCG 58.803 40.000 0.00 0.00 0.00 4.02
4144 5144 5.975344 GCGAATATAAAAGCCCAAGTTTACC 59.025 40.000 0.00 0.00 0.00 2.85
4145 5145 6.557110 TGCGAATATAAAAGCCCAAGTTTAC 58.443 36.000 0.00 0.00 0.00 2.01
4146 5146 6.761099 TGCGAATATAAAAGCCCAAGTTTA 57.239 33.333 0.00 0.00 0.00 2.01
4147 5147 5.652994 TGCGAATATAAAAGCCCAAGTTT 57.347 34.783 0.00 0.00 0.00 2.66
4148 5148 5.652994 TTGCGAATATAAAAGCCCAAGTT 57.347 34.783 0.00 0.00 0.00 2.66
4149 5149 5.185056 AGTTTGCGAATATAAAAGCCCAAGT 59.815 36.000 0.00 0.00 0.00 3.16
4150 5150 5.650543 AGTTTGCGAATATAAAAGCCCAAG 58.349 37.500 0.00 0.00 0.00 3.61
4151 5151 5.652994 AGTTTGCGAATATAAAAGCCCAA 57.347 34.783 0.00 0.00 0.00 4.12
4152 5152 5.406649 CAAGTTTGCGAATATAAAAGCCCA 58.593 37.500 0.00 0.00 0.00 5.36
4153 5153 4.803613 CCAAGTTTGCGAATATAAAAGCCC 59.196 41.667 0.00 0.00 0.00 5.19
4154 5154 4.803613 CCCAAGTTTGCGAATATAAAAGCC 59.196 41.667 0.00 0.00 0.00 4.35
4155 5155 4.267690 GCCCAAGTTTGCGAATATAAAAGC 59.732 41.667 0.00 0.00 0.00 3.51
4156 5156 5.650543 AGCCCAAGTTTGCGAATATAAAAG 58.349 37.500 0.00 0.00 0.00 2.27
4157 5157 5.652994 AGCCCAAGTTTGCGAATATAAAA 57.347 34.783 0.00 0.00 0.00 1.52
4158 5158 6.761099 TTAGCCCAAGTTTGCGAATATAAA 57.239 33.333 0.00 0.00 0.00 1.40
4159 5159 6.761099 TTTAGCCCAAGTTTGCGAATATAA 57.239 33.333 0.00 0.00 0.00 0.98
4160 5160 6.151312 TGTTTTAGCCCAAGTTTGCGAATATA 59.849 34.615 0.00 0.00 0.00 0.86
4161 5161 5.047660 TGTTTTAGCCCAAGTTTGCGAATAT 60.048 36.000 0.00 0.00 0.00 1.28
4162 5162 4.278669 TGTTTTAGCCCAAGTTTGCGAATA 59.721 37.500 0.00 0.00 0.00 1.75
4163 5163 3.068873 TGTTTTAGCCCAAGTTTGCGAAT 59.931 39.130 0.00 0.00 0.00 3.34
4164 5164 2.427453 TGTTTTAGCCCAAGTTTGCGAA 59.573 40.909 0.00 0.00 0.00 4.70
4165 5165 2.025155 TGTTTTAGCCCAAGTTTGCGA 58.975 42.857 0.00 0.00 0.00 5.10
4166 5166 2.124122 GTGTTTTAGCCCAAGTTTGCG 58.876 47.619 0.00 0.00 0.00 4.85
4167 5167 2.124122 CGTGTTTTAGCCCAAGTTTGC 58.876 47.619 0.00 0.00 0.00 3.68
4168 5168 3.181495 TGACGTGTTTTAGCCCAAGTTTG 60.181 43.478 0.00 0.00 0.00 2.93
4169 5169 3.018149 TGACGTGTTTTAGCCCAAGTTT 58.982 40.909 0.00 0.00 0.00 2.66
4170 5170 2.645802 TGACGTGTTTTAGCCCAAGTT 58.354 42.857 0.00 0.00 0.00 2.66
4171 5171 2.335316 TGACGTGTTTTAGCCCAAGT 57.665 45.000 0.00 0.00 0.00 3.16
4172 5172 3.564511 CAATGACGTGTTTTAGCCCAAG 58.435 45.455 0.00 0.00 0.00 3.61
4173 5173 2.287909 GCAATGACGTGTTTTAGCCCAA 60.288 45.455 0.00 0.00 0.00 4.12
4174 5174 1.268352 GCAATGACGTGTTTTAGCCCA 59.732 47.619 0.00 0.00 0.00 5.36
4175 5175 1.268352 TGCAATGACGTGTTTTAGCCC 59.732 47.619 0.00 0.00 0.00 5.19
4176 5176 2.697431 TGCAATGACGTGTTTTAGCC 57.303 45.000 0.00 0.00 0.00 3.93
4177 5177 7.962934 TTTATATGCAATGACGTGTTTTAGC 57.037 32.000 0.00 0.00 0.00 3.09
4179 5179 9.900710 AGTTTTTATATGCAATGACGTGTTTTA 57.099 25.926 0.00 0.00 0.00 1.52
4180 5180 8.810652 AGTTTTTATATGCAATGACGTGTTTT 57.189 26.923 0.00 0.00 0.00 2.43
4181 5181 9.554724 CTAGTTTTTATATGCAATGACGTGTTT 57.445 29.630 0.00 0.00 0.00 2.83
4182 5182 8.726988 ACTAGTTTTTATATGCAATGACGTGTT 58.273 29.630 0.00 0.00 0.00 3.32
4183 5183 8.263940 ACTAGTTTTTATATGCAATGACGTGT 57.736 30.769 0.00 0.00 0.00 4.49
4184 5184 8.387354 TGACTAGTTTTTATATGCAATGACGTG 58.613 33.333 0.00 0.00 0.00 4.49
4185 5185 8.487313 TGACTAGTTTTTATATGCAATGACGT 57.513 30.769 0.00 0.00 0.00 4.34
4186 5186 9.767684 TTTGACTAGTTTTTATATGCAATGACG 57.232 29.630 0.00 0.00 0.00 4.35
4221 5221 1.357991 GCGACTTCTCAGCCTTCAGC 61.358 60.000 0.00 0.00 44.25 4.26
4222 5222 0.739112 GGCGACTTCTCAGCCTTCAG 60.739 60.000 0.00 0.00 46.83 3.02
4223 5223 1.293498 GGCGACTTCTCAGCCTTCA 59.707 57.895 0.00 0.00 46.83 3.02
4224 5224 4.193653 GGCGACTTCTCAGCCTTC 57.806 61.111 0.00 0.00 46.83 3.46
4227 5227 2.507324 GACGGCGACTTCTCAGCC 60.507 66.667 16.62 0.00 46.88 4.85
4228 5228 2.876645 CGACGGCGACTTCTCAGC 60.877 66.667 16.62 0.00 40.82 4.26
4229 5229 1.512310 GACGACGGCGACTTCTCAG 60.512 63.158 22.49 0.00 41.64 3.35
4230 5230 2.559840 GACGACGGCGACTTCTCA 59.440 61.111 22.49 0.00 41.64 3.27
4231 5231 2.573689 CGACGACGGCGACTTCTC 60.574 66.667 22.49 1.83 41.64 2.87
4232 5232 4.755614 GCGACGACGGCGACTTCT 62.756 66.667 30.26 0.00 41.64 2.85
4252 5252 2.107141 GGAGAAGGCCGACGATGG 59.893 66.667 0.00 0.00 0.00 3.51
4253 5253 1.066587 GAGGAGAAGGCCGACGATG 59.933 63.158 0.00 0.00 0.00 3.84
4254 5254 2.128507 GGAGGAGAAGGCCGACGAT 61.129 63.158 0.00 0.00 0.00 3.73
4255 5255 2.754658 GGAGGAGAAGGCCGACGA 60.755 66.667 0.00 0.00 0.00 4.20
4256 5256 2.352032 AAGGAGGAGAAGGCCGACG 61.352 63.158 0.00 0.00 0.00 5.12
4257 5257 1.219393 CAAGGAGGAGAAGGCCGAC 59.781 63.158 0.00 0.00 0.00 4.79
4258 5258 1.078528 TCAAGGAGGAGAAGGCCGA 59.921 57.895 0.00 0.00 0.00 5.54
4259 5259 1.219393 GTCAAGGAGGAGAAGGCCG 59.781 63.158 0.00 0.00 0.00 6.13
4260 5260 0.539518 GAGTCAAGGAGGAGAAGGCC 59.460 60.000 0.00 0.00 0.00 5.19
4261 5261 0.174617 CGAGTCAAGGAGGAGAAGGC 59.825 60.000 0.00 0.00 0.00 4.35
4262 5262 0.820871 CCGAGTCAAGGAGGAGAAGG 59.179 60.000 0.00 0.00 0.00 3.46
4263 5263 0.820871 CCCGAGTCAAGGAGGAGAAG 59.179 60.000 0.00 0.00 0.00 2.85
4264 5264 1.258445 GCCCGAGTCAAGGAGGAGAA 61.258 60.000 0.27 0.00 0.00 2.87
4265 5265 1.682684 GCCCGAGTCAAGGAGGAGA 60.683 63.158 0.27 0.00 0.00 3.71
4266 5266 2.896443 GCCCGAGTCAAGGAGGAG 59.104 66.667 0.27 0.00 0.00 3.69
4267 5267 3.068691 CGCCCGAGTCAAGGAGGA 61.069 66.667 0.27 0.00 0.00 3.71
4268 5268 4.821589 GCGCCCGAGTCAAGGAGG 62.822 72.222 0.00 0.00 0.00 4.30
4269 5269 4.821589 GGCGCCCGAGTCAAGGAG 62.822 72.222 18.11 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.