Multiple sequence alignment - TraesCS2B01G344600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G344600 chr2B 100.000 4264 0 0 1 4264 491180329 491184592 0.000000e+00 7875.0
1 TraesCS2B01G344600 chr2B 93.617 47 3 0 1879 1925 491182161 491182207 2.130000e-08 71.3
2 TraesCS2B01G344600 chr2B 93.617 47 3 0 1833 1879 491182207 491182253 2.130000e-08 71.3
3 TraesCS2B01G344600 chr2B 100.000 36 0 0 4170 4205 491184453 491184488 2.750000e-07 67.6
4 TraesCS2B01G344600 chr2B 100.000 36 0 0 4125 4160 491184498 491184533 2.750000e-07 67.6
5 TraesCS2B01G344600 chr2A 92.887 3641 198 35 1 3610 570786179 570782569 0.000000e+00 5232.0
6 TraesCS2B01G344600 chr2A 83.402 241 25 8 3791 4025 570782437 570782206 4.320000e-50 209.0
7 TraesCS2B01G344600 chr2A 93.750 48 3 0 1878 1925 570784355 570784308 5.910000e-09 73.1
8 TraesCS2B01G344600 chr2D 92.130 1512 92 17 2317 3816 419041596 419043092 0.000000e+00 2108.0
9 TraesCS2B01G344600 chr2D 94.527 1352 46 12 765 2105 419040257 419041591 0.000000e+00 2061.0
10 TraesCS2B01G344600 chr2D 90.827 774 54 11 1 771 419039346 419040105 0.000000e+00 1020.0
11 TraesCS2B01G344600 chr3B 79.405 874 136 28 995 1844 40245592 40244739 1.030000e-160 577.0
12 TraesCS2B01G344600 chr3A 83.788 586 77 12 996 1568 32151800 32151220 1.350000e-149 540.0
13 TraesCS2B01G344600 chr3A 86.620 142 19 0 1703 1844 32151094 32150953 1.590000e-34 158.0
14 TraesCS2B01G344600 chr3D 83.503 588 76 16 996 1568 23063560 23062979 2.920000e-146 529.0
15 TraesCS2B01G344600 chr3D 85.211 142 21 0 1703 1844 23062854 23062713 3.440000e-31 147.0
16 TraesCS2B01G344600 chr4B 85.063 395 53 6 1023 1414 32806104 32806495 8.590000e-107 398.0
17 TraesCS2B01G344600 chr4B 87.736 106 13 0 2982 3087 32807359 32807464 1.610000e-24 124.0
18 TraesCS2B01G344600 chr4A 84.987 393 57 2 1023 1414 580908038 580907647 8.590000e-107 398.0
19 TraesCS2B01G344600 chr4A 85.156 128 18 1 2982 3109 580906795 580906669 3.460000e-26 130.0
20 TraesCS2B01G344600 chr4D 84.733 393 58 2 1023 1414 21888296 21887905 4.000000e-105 392.0
21 TraesCS2B01G344600 chr4D 88.393 112 13 0 2982 3093 21887023 21886912 7.440000e-28 135.0
22 TraesCS2B01G344600 chr7B 83.636 110 18 0 1728 1837 292829136 292829245 2.100000e-18 104.0
23 TraesCS2B01G344600 chr7A 83.636 110 18 0 1728 1837 386357098 386356989 2.100000e-18 104.0
24 TraesCS2B01G344600 chr7D 82.727 110 19 0 1728 1837 356897476 356897585 9.760000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G344600 chr2B 491180329 491184592 4263 False 1630.560000 7875 97.446800 1 4264 5 chr2B.!!$F1 4263
1 TraesCS2B01G344600 chr2A 570782206 570786179 3973 True 1838.033333 5232 90.013000 1 4025 3 chr2A.!!$R1 4024
2 TraesCS2B01G344600 chr2D 419039346 419043092 3746 False 1729.666667 2108 92.494667 1 3816 3 chr2D.!!$F1 3815
3 TraesCS2B01G344600 chr3B 40244739 40245592 853 True 577.000000 577 79.405000 995 1844 1 chr3B.!!$R1 849
4 TraesCS2B01G344600 chr3A 32150953 32151800 847 True 349.000000 540 85.204000 996 1844 2 chr3A.!!$R1 848
5 TraesCS2B01G344600 chr3D 23062713 23063560 847 True 338.000000 529 84.357000 996 1844 2 chr3D.!!$R1 848
6 TraesCS2B01G344600 chr4B 32806104 32807464 1360 False 261.000000 398 86.399500 1023 3087 2 chr4B.!!$F1 2064
7 TraesCS2B01G344600 chr4A 580906669 580908038 1369 True 264.000000 398 85.071500 1023 3109 2 chr4A.!!$R1 2086
8 TraesCS2B01G344600 chr4D 21886912 21888296 1384 True 263.500000 392 86.563000 1023 3093 2 chr4D.!!$R1 2070

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
284 287 0.179045 AATCAAATCTCGCCTCCCCG 60.179 55.0 0.00 0.0 0.00 5.73 F
687 690 0.319555 CGGGGCACGGTGATATACAG 60.320 60.0 13.29 0.0 39.42 2.74 F
1056 1222 0.824109 TGTACATGGCTAAGCTCGCT 59.176 50.0 7.74 0.0 0.00 4.93 F
1380 1546 1.068121 CCCCTGAGTCCAAGGTCTTT 58.932 55.0 0.00 0.0 0.00 2.52 F
3016 3462 0.036010 CATTTCGGAGCTGGACACCT 60.036 55.0 0.00 0.0 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1221 1387 1.077625 ACGGCTCTCCTCCTTCTGT 59.922 57.895 0.00 0.0 0.00 3.41 R
2327 2752 1.166531 ACAAGCAAAGAGTGTCCGCC 61.167 55.000 0.00 0.0 0.00 6.13 R
2717 3163 1.537202 GGCCAAGTTCTGCTACAACTG 59.463 52.381 0.00 0.0 34.21 3.16 R
3236 3683 0.809241 CCTCGCTGGAGTCATGCTTC 60.809 60.000 0.00 0.0 38.70 3.86 R
3883 4347 0.161658 CGTGACGCACAGATCAACAC 59.838 55.000 9.95 0.0 33.40 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
247 250 4.840005 GCAGGTACCCAGCCGCTC 62.840 72.222 8.74 0.00 29.40 5.03
248 251 4.162690 CAGGTACCCAGCCGCTCC 62.163 72.222 8.74 0.00 0.00 4.70
249 252 4.400251 AGGTACCCAGCCGCTCCT 62.400 66.667 8.74 0.00 0.00 3.69
250 253 4.162690 GGTACCCAGCCGCTCCTG 62.163 72.222 0.00 0.00 0.00 3.86
251 254 4.840005 GTACCCAGCCGCTCCTGC 62.840 72.222 0.00 0.00 0.00 4.85
262 265 2.269241 CTCCTGCCGTTTCCTCCC 59.731 66.667 0.00 0.00 0.00 4.30
279 282 1.284785 TCCCCAAATCAAATCTCGCCT 59.715 47.619 0.00 0.00 0.00 5.52
282 285 1.678101 CCAAATCAAATCTCGCCTCCC 59.322 52.381 0.00 0.00 0.00 4.30
284 287 0.179045 AATCAAATCTCGCCTCCCCG 60.179 55.000 0.00 0.00 0.00 5.73
287 290 1.686110 AAATCTCGCCTCCCCGTCT 60.686 57.895 0.00 0.00 0.00 4.18
331 334 3.256558 TCGTCGTTCGACTAGATCTTCA 58.743 45.455 20.22 0.00 44.01 3.02
343 346 1.080498 AGATCTTCACTGGTACCCCCA 59.920 52.381 10.07 0.00 42.51 4.96
382 385 1.675641 GCCCTGATCTGCGGTGTTT 60.676 57.895 0.00 0.00 0.00 2.83
394 397 1.664874 GCGGTGTTTTGACGGGATTTC 60.665 52.381 0.00 0.00 0.00 2.17
398 401 3.067601 GGTGTTTTGACGGGATTTCTTGT 59.932 43.478 0.00 0.00 0.00 3.16
400 403 3.049912 GTTTTGACGGGATTTCTTGTGC 58.950 45.455 0.00 0.00 0.00 4.57
435 438 5.123344 GGGCTAAATCTGTTGTTTCGTACAT 59.877 40.000 0.00 0.00 36.44 2.29
463 466 1.274596 CCGTGCGTAGTGAATGGTAC 58.725 55.000 0.00 0.00 0.00 3.34
466 469 1.659098 GTGCGTAGTGAATGGTACTGC 59.341 52.381 0.00 0.00 0.00 4.40
468 471 2.028476 TGCGTAGTGAATGGTACTGCTT 60.028 45.455 0.00 0.00 0.00 3.91
469 472 2.603560 GCGTAGTGAATGGTACTGCTTC 59.396 50.000 0.00 0.00 0.00 3.86
544 547 2.033194 CCGTCGAAGCCTGGGTTTC 61.033 63.158 13.06 6.25 33.04 2.78
608 611 4.698780 CCCCTCTCGTGTCGATATATTACA 59.301 45.833 0.00 0.00 34.61 2.41
615 618 6.909909 TCGTGTCGATATATTACAGCAGATT 58.090 36.000 0.00 0.00 0.00 2.40
616 619 8.036273 TCGTGTCGATATATTACAGCAGATTA 57.964 34.615 0.00 0.00 0.00 1.75
617 620 7.961283 TCGTGTCGATATATTACAGCAGATTAC 59.039 37.037 0.00 0.00 0.00 1.89
656 659 3.440173 CAGTATTGCAGGGGTTGTAGTTG 59.560 47.826 0.00 0.00 0.00 3.16
657 660 1.256812 ATTGCAGGGGTTGTAGTTGC 58.743 50.000 0.00 0.00 35.42 4.17
680 683 3.454587 GATATGCGGGGCACGGTGA 62.455 63.158 12.74 0.00 43.04 4.02
687 690 0.319555 CGGGGCACGGTGATATACAG 60.320 60.000 13.29 0.00 39.42 2.74
698 701 4.452455 CGGTGATATACAGAATTGGCCTTC 59.548 45.833 3.32 0.00 0.00 3.46
702 705 7.719633 GGTGATATACAGAATTGGCCTTCTTAA 59.280 37.037 3.32 0.00 33.18 1.85
708 712 6.131961 ACAGAATTGGCCTTCTTAATATGCT 58.868 36.000 3.32 0.00 33.18 3.79
720 724 9.680315 CCTTCTTAATATGCTAGTGTACAGTAC 57.320 37.037 6.31 3.49 0.00 2.73
754 758 4.612943 TCAAACCTGTTTTCGGTATTTGC 58.387 39.130 0.00 0.00 33.80 3.68
763 767 2.410785 TCGGTATTTGCGGTCTATCG 57.589 50.000 0.00 0.00 0.00 2.92
779 783 7.198390 CGGTCTATCGGAAAGAATTACAGTTA 58.802 38.462 0.00 0.00 0.00 2.24
827 984 3.563808 TCCTTGTGGAATTTTGTCTCGTG 59.436 43.478 0.00 0.00 39.87 4.35
846 1003 3.479006 GTGACATGTGTATTTGTGCGTC 58.521 45.455 1.15 0.00 0.00 5.19
1056 1222 0.824109 TGTACATGGCTAAGCTCGCT 59.176 50.000 7.74 0.00 0.00 4.93
1221 1387 2.842457 CGCATCATCTCCTCCATTGAA 58.158 47.619 0.00 0.00 0.00 2.69
1380 1546 1.068121 CCCCTGAGTCCAAGGTCTTT 58.932 55.000 0.00 0.00 0.00 2.52
1616 1886 7.818930 ACAATGTCAATTTATTGGCGAAGAATT 59.181 29.630 2.95 0.00 44.96 2.17
1696 2058 8.463607 TCTCTTGTTTAAAAAGGTTCGATTTGT 58.536 29.630 0.00 0.00 0.00 2.83
1914 2284 6.450545 TCTGAGTCAGTTAGATGTTCTGTTG 58.549 40.000 19.53 0.00 32.61 3.33
1924 2294 2.276472 TGTTCTGTTGTTGCTTGTGC 57.724 45.000 0.00 0.00 40.20 4.57
1943 2313 4.581409 TGTGCCGTGCTAGATACACTATAA 59.419 41.667 0.00 0.00 35.84 0.98
2015 2436 8.387190 AGGTGAACTGGTAAAACTAATTACAC 57.613 34.615 0.00 0.00 37.48 2.90
2043 2464 5.281727 TGTGTCTCGTAATACATGCAGATC 58.718 41.667 0.00 0.00 0.00 2.75
2050 2471 8.023706 TCTCGTAATACATGCAGATCTTATGAC 58.976 37.037 18.85 6.34 0.00 3.06
2126 2547 5.186198 GTCATATTTACACTGCCACCTTCT 58.814 41.667 0.00 0.00 0.00 2.85
2141 2566 4.107622 CACCTTCTTTGTGCTGTTTTGAG 58.892 43.478 0.00 0.00 0.00 3.02
2151 2576 4.227512 TGCTGTTTTGAGCACACAATAG 57.772 40.909 3.09 3.09 44.16 1.73
2184 2609 5.991933 TTTAAGCATGCAAAAGGGATACA 57.008 34.783 21.98 0.00 39.74 2.29
2192 2617 5.643379 TGCAAAAGGGATACAAATGAGAC 57.357 39.130 0.00 0.00 39.74 3.36
2203 2628 6.183360 GGATACAAATGAGACATTTGAGGGTG 60.183 42.308 30.55 13.86 40.42 4.61
2204 2629 3.256631 ACAAATGAGACATTTGAGGGTGC 59.743 43.478 30.55 0.00 40.42 5.01
2205 2630 2.885135 ATGAGACATTTGAGGGTGCA 57.115 45.000 0.00 0.00 0.00 4.57
2208 2633 2.637382 TGAGACATTTGAGGGTGCAGTA 59.363 45.455 0.00 0.00 0.00 2.74
2238 2663 9.773328 CATTGTGTAAGTACCACATCTTATTTG 57.227 33.333 4.56 0.00 0.00 2.32
2239 2664 7.372451 TGTGTAAGTACCACATCTTATTTGC 57.628 36.000 1.60 0.00 0.00 3.68
2279 2704 7.274904 CACAACTGGAGAAAATAATGCAATCTG 59.725 37.037 0.00 0.00 0.00 2.90
2294 2719 7.692460 ATGCAATCTGTTTTTCATCTACTGA 57.308 32.000 0.00 0.00 0.00 3.41
2301 2726 8.818141 TCTGTTTTTCATCTACTGAACTAGTG 57.182 34.615 0.00 0.00 43.54 2.74
2332 2757 5.789574 ATCCCCTTATATATTTTGGCGGA 57.210 39.130 0.00 1.86 0.00 5.54
2335 2760 4.457949 CCCCTTATATATTTTGGCGGACAC 59.542 45.833 0.00 0.00 0.00 3.67
2337 2762 5.411669 CCCTTATATATTTTGGCGGACACTC 59.588 44.000 0.00 0.00 0.00 3.51
2411 2837 7.411486 TTGGTCATTTGACTTTAGAACCAAA 57.589 32.000 10.32 0.00 44.20 3.28
2412 2838 7.411486 TGGTCATTTGACTTTAGAACCAAAA 57.589 32.000 10.32 0.00 44.20 2.44
2413 2839 8.017418 TGGTCATTTGACTTTAGAACCAAAAT 57.983 30.769 10.32 0.00 44.20 1.82
2414 2840 7.925483 TGGTCATTTGACTTTAGAACCAAAATG 59.075 33.333 10.32 0.00 44.20 2.32
2415 2841 7.384932 GGTCATTTGACTTTAGAACCAAAATGG 59.615 37.037 10.32 0.00 44.20 3.16
2416 2842 8.141268 GTCATTTGACTTTAGAACCAAAATGGA 58.859 33.333 2.85 0.00 39.91 3.41
2417 2843 8.700051 TCATTTGACTTTAGAACCAAAATGGAA 58.300 29.630 2.85 0.00 40.96 3.53
2418 2844 8.764287 CATTTGACTTTAGAACCAAAATGGAAC 58.236 33.333 2.85 0.00 40.96 3.62
2449 2875 2.254152 TTAGCTGTGGTCTGGGAGAT 57.746 50.000 0.00 0.00 0.00 2.75
2749 3195 1.157870 ACTTGGCCAACAGTTCGTCG 61.158 55.000 16.05 3.84 0.00 5.12
2751 3197 0.104487 TTGGCCAACAGTTCGTCGTA 59.896 50.000 16.05 0.00 0.00 3.43
2887 3333 3.428045 GCCCATTTTGGACTTTCATCTCG 60.428 47.826 0.00 0.00 40.96 4.04
2892 3338 7.092716 CCATTTTGGACTTTCATCTCGAATTT 58.907 34.615 0.00 0.00 40.96 1.82
3016 3462 0.036010 CATTTCGGAGCTGGACACCT 60.036 55.000 0.00 0.00 0.00 4.00
3123 3569 0.584054 CGTCTATTTCGCAAGCGCAC 60.584 55.000 11.47 0.00 38.40 5.34
3145 3592 6.725246 CACCTTTTATCTTGTCGTGTTCTTT 58.275 36.000 0.00 0.00 0.00 2.52
3146 3593 6.632834 CACCTTTTATCTTGTCGTGTTCTTTG 59.367 38.462 0.00 0.00 0.00 2.77
3156 3603 3.564225 GTCGTGTTCTTTGAAACCATCCT 59.436 43.478 0.00 0.00 0.00 3.24
3160 3607 3.895041 TGTTCTTTGAAACCATCCTTCCC 59.105 43.478 0.00 0.00 0.00 3.97
3236 3683 2.206536 GGAGATCAGGGAGGCTCCG 61.207 68.421 26.54 14.43 37.43 4.63
3319 3766 5.389935 GCTAGTGTTTGCTACTGTCAATGAC 60.390 44.000 6.41 6.41 0.00 3.06
3346 3793 0.107993 ATGTGCTCTGGATCGTGTGG 60.108 55.000 0.00 0.00 0.00 4.17
3350 3797 1.103803 GCTCTGGATCGTGTGGTAGA 58.896 55.000 0.00 0.00 0.00 2.59
3363 3810 5.185442 TCGTGTGGTAGATGTGTTATGGTTA 59.815 40.000 0.00 0.00 0.00 2.85
3366 3813 7.707464 CGTGTGGTAGATGTGTTATGGTTATTA 59.293 37.037 0.00 0.00 0.00 0.98
3456 3904 4.101448 CGGGGACTGCCTCCTTGG 62.101 72.222 0.00 0.00 39.39 3.61
3457 3905 2.936032 GGGGACTGCCTCCTTGGT 60.936 66.667 0.00 0.00 39.39 3.67
3458 3906 2.671682 GGGACTGCCTCCTTGGTC 59.328 66.667 0.00 0.00 39.39 4.02
3459 3907 1.920835 GGGACTGCCTCCTTGGTCT 60.921 63.158 0.00 0.00 39.39 3.85
3461 3909 1.298014 GACTGCCTCCTTGGTCTGG 59.702 63.158 0.00 0.00 38.35 3.86
3462 3910 2.045536 CTGCCTCCTTGGTCTGGC 60.046 66.667 11.65 11.65 45.10 4.85
3464 3912 3.334054 GCCTCCTTGGTCTGGCCT 61.334 66.667 3.32 0.00 39.49 5.19
3467 3915 2.935481 TCCTTGGTCTGGCCTGGG 60.935 66.667 10.07 1.66 38.35 4.45
3542 3994 9.249457 CTTAATATTGCTTCTTATCGTGAGTGA 57.751 33.333 0.00 0.00 0.00 3.41
3561 4013 2.513026 ATCCTGCGTCTGTGTCTGGC 62.513 60.000 0.00 0.00 0.00 4.85
3600 4053 1.558233 TTGGTTGTTTTTCGTGGGGT 58.442 45.000 0.00 0.00 0.00 4.95
3634 4087 2.123338 TGGCTTTGTGGCTGGCTT 60.123 55.556 2.00 0.00 42.34 4.35
3637 4090 0.897621 GGCTTTGTGGCTGGCTTATT 59.102 50.000 2.00 0.00 38.32 1.40
3644 4097 1.899142 GTGGCTGGCTTATTTGGGAAA 59.101 47.619 2.00 0.00 0.00 3.13
3653 4106 4.164030 GGCTTATTTGGGAAATGGGATTGT 59.836 41.667 0.00 0.00 32.38 2.71
3690 4150 2.454055 GGATAAGCGCTGACAAAATGC 58.546 47.619 12.58 0.00 0.00 3.56
3718 4181 2.436646 CGATGGACGCAGCCCTTT 60.437 61.111 0.00 0.00 34.51 3.11
3735 4198 4.767409 GCCCTTTCTGTACCTGAAATTCTT 59.233 41.667 10.29 0.00 32.56 2.52
3755 4218 1.276622 AAACAGACGTCCTAGCCCAT 58.723 50.000 13.01 0.00 0.00 4.00
3760 4223 1.797211 GACGTCCTAGCCCATCTCCG 61.797 65.000 3.51 0.00 0.00 4.63
3761 4224 2.737830 GTCCTAGCCCATCTCCGC 59.262 66.667 0.00 0.00 0.00 5.54
3777 4240 1.755384 CGCCCTCTCCCTAATTCCC 59.245 63.158 0.00 0.00 0.00 3.97
3785 4248 1.689273 CTCCCTAATTCCCGACTCCTG 59.311 57.143 0.00 0.00 0.00 3.86
3786 4249 0.106894 CCCTAATTCCCGACTCCTGC 59.893 60.000 0.00 0.00 0.00 4.85
3789 4252 0.326238 TAATTCCCGACTCCTGCCCT 60.326 55.000 0.00 0.00 0.00 5.19
3834 4298 2.892425 GCGATCCGGGAGCTGTTG 60.892 66.667 10.99 0.00 0.00 3.33
3844 4308 3.056313 GAGCTGTTGGGCGGAATGC 62.056 63.158 0.00 0.00 45.38 3.56
3864 4328 2.159379 GCTTTTCTGTAGGGATTTGCGG 60.159 50.000 0.00 0.00 0.00 5.69
3865 4329 1.459450 TTTCTGTAGGGATTTGCGGC 58.541 50.000 0.00 0.00 0.00 6.53
3972 4436 2.523507 CGGCGAATCAGCAGCAGAG 61.524 63.158 0.00 0.00 39.27 3.35
3997 4466 1.134098 TCGGCCATGATTTCCTCTTCC 60.134 52.381 2.24 0.00 0.00 3.46
3999 4468 1.408822 GGCCATGATTTCCTCTTCCGT 60.409 52.381 0.00 0.00 0.00 4.69
4002 4471 3.878778 CCATGATTTCCTCTTCCGTTCT 58.121 45.455 0.00 0.00 0.00 3.01
4005 4474 5.183904 CCATGATTTCCTCTTCCGTTCTTTT 59.816 40.000 0.00 0.00 0.00 2.27
4028 4497 7.416964 TTTTCTTTTTGAAGATTGAGGGTGA 57.583 32.000 0.00 0.00 35.89 4.02
4029 4498 6.639632 TTCTTTTTGAAGATTGAGGGTGAG 57.360 37.500 0.00 0.00 0.00 3.51
4030 4499 5.072741 TCTTTTTGAAGATTGAGGGTGAGG 58.927 41.667 0.00 0.00 0.00 3.86
4031 4500 4.722526 TTTTGAAGATTGAGGGTGAGGA 57.277 40.909 0.00 0.00 0.00 3.71
4032 4501 4.722526 TTTGAAGATTGAGGGTGAGGAA 57.277 40.909 0.00 0.00 0.00 3.36
4033 4502 4.934797 TTGAAGATTGAGGGTGAGGAAT 57.065 40.909 0.00 0.00 0.00 3.01
4034 4503 4.494091 TGAAGATTGAGGGTGAGGAATC 57.506 45.455 0.00 0.00 0.00 2.52
4035 4504 4.107072 TGAAGATTGAGGGTGAGGAATCT 58.893 43.478 0.00 0.00 36.86 2.40
4036 4505 4.537688 TGAAGATTGAGGGTGAGGAATCTT 59.462 41.667 0.00 0.00 44.20 2.40
4037 4506 4.769345 AGATTGAGGGTGAGGAATCTTC 57.231 45.455 0.00 0.00 32.40 2.87
4038 4507 4.369872 AGATTGAGGGTGAGGAATCTTCT 58.630 43.478 0.00 0.00 32.40 2.85
4039 4508 3.988976 TTGAGGGTGAGGAATCTTCTG 57.011 47.619 0.00 0.00 0.00 3.02
4040 4509 3.190383 TGAGGGTGAGGAATCTTCTGA 57.810 47.619 0.00 0.00 0.00 3.27
4041 4510 3.729108 TGAGGGTGAGGAATCTTCTGAT 58.271 45.455 0.00 0.00 33.70 2.90
4042 4511 3.708631 TGAGGGTGAGGAATCTTCTGATC 59.291 47.826 0.00 0.00 31.51 2.92
4043 4512 2.697751 AGGGTGAGGAATCTTCTGATCG 59.302 50.000 0.00 0.00 31.51 3.69
4044 4513 2.432510 GGGTGAGGAATCTTCTGATCGT 59.567 50.000 0.00 0.00 31.51 3.73
4045 4514 3.118592 GGGTGAGGAATCTTCTGATCGTT 60.119 47.826 0.00 0.00 31.51 3.85
4046 4515 4.508662 GGTGAGGAATCTTCTGATCGTTT 58.491 43.478 0.00 0.00 31.51 3.60
4047 4516 4.568760 GGTGAGGAATCTTCTGATCGTTTC 59.431 45.833 0.00 0.00 31.51 2.78
4048 4517 5.415221 GTGAGGAATCTTCTGATCGTTTCT 58.585 41.667 0.00 0.00 31.51 2.52
4049 4518 5.290643 GTGAGGAATCTTCTGATCGTTTCTG 59.709 44.000 0.00 0.00 31.51 3.02
4050 4519 5.047021 TGAGGAATCTTCTGATCGTTTCTGT 60.047 40.000 0.00 0.00 31.51 3.41
4051 4520 6.152831 TGAGGAATCTTCTGATCGTTTCTGTA 59.847 38.462 0.00 0.00 31.51 2.74
4052 4521 6.936279 AGGAATCTTCTGATCGTTTCTGTAA 58.064 36.000 0.00 0.00 31.51 2.41
4053 4522 6.814146 AGGAATCTTCTGATCGTTTCTGTAAC 59.186 38.462 0.00 0.00 31.51 2.50
4054 4523 6.590292 GGAATCTTCTGATCGTTTCTGTAACA 59.410 38.462 0.00 0.00 32.15 2.41
4055 4524 7.278868 GGAATCTTCTGATCGTTTCTGTAACAT 59.721 37.037 0.00 0.00 32.15 2.71
4056 4525 6.951256 TCTTCTGATCGTTTCTGTAACATG 57.049 37.500 0.00 0.00 36.50 3.21
4057 4526 5.869344 TCTTCTGATCGTTTCTGTAACATGG 59.131 40.000 0.00 0.00 36.50 3.66
4058 4527 4.503910 TCTGATCGTTTCTGTAACATGGG 58.496 43.478 0.00 0.00 36.50 4.00
4059 4528 4.221924 TCTGATCGTTTCTGTAACATGGGA 59.778 41.667 0.00 0.00 36.50 4.37
4060 4529 4.900684 TGATCGTTTCTGTAACATGGGAA 58.099 39.130 0.00 0.00 36.50 3.97
4061 4530 5.496556 TGATCGTTTCTGTAACATGGGAAT 58.503 37.500 0.00 0.00 36.50 3.01
4062 4531 5.584649 TGATCGTTTCTGTAACATGGGAATC 59.415 40.000 0.00 0.00 36.50 2.52
4063 4532 4.900684 TCGTTTCTGTAACATGGGAATCA 58.099 39.130 0.00 0.00 36.50 2.57
4064 4533 5.309638 TCGTTTCTGTAACATGGGAATCAA 58.690 37.500 0.00 0.00 36.50 2.57
4065 4534 5.943416 TCGTTTCTGTAACATGGGAATCAAT 59.057 36.000 0.00 0.00 36.50 2.57
4066 4535 6.093495 TCGTTTCTGTAACATGGGAATCAATC 59.907 38.462 0.00 0.00 36.50 2.67
4067 4536 6.128035 CGTTTCTGTAACATGGGAATCAATCA 60.128 38.462 0.00 0.00 36.50 2.57
4068 4537 7.574779 CGTTTCTGTAACATGGGAATCAATCAA 60.575 37.037 0.00 0.00 36.50 2.57
4069 4538 7.959658 TTCTGTAACATGGGAATCAATCAAT 57.040 32.000 0.00 0.00 0.00 2.57
4070 4539 7.572523 TCTGTAACATGGGAATCAATCAATC 57.427 36.000 0.00 0.00 0.00 2.67
4071 4540 7.118060 TCTGTAACATGGGAATCAATCAATCA 58.882 34.615 0.00 0.00 0.00 2.57
4072 4541 7.614974 TCTGTAACATGGGAATCAATCAATCAA 59.385 33.333 0.00 0.00 0.00 2.57
4073 4542 8.131847 TGTAACATGGGAATCAATCAATCAAA 57.868 30.769 0.00 0.00 0.00 2.69
4074 4543 8.034215 TGTAACATGGGAATCAATCAATCAAAC 58.966 33.333 0.00 0.00 0.00 2.93
4075 4544 5.653507 ACATGGGAATCAATCAATCAAACG 58.346 37.500 0.00 0.00 0.00 3.60
4076 4545 5.418524 ACATGGGAATCAATCAATCAAACGA 59.581 36.000 0.00 0.00 0.00 3.85
4077 4546 5.973899 TGGGAATCAATCAATCAAACGAA 57.026 34.783 0.00 0.00 0.00 3.85
4078 4547 6.528537 TGGGAATCAATCAATCAAACGAAT 57.471 33.333 0.00 0.00 0.00 3.34
4079 4548 7.637631 TGGGAATCAATCAATCAAACGAATA 57.362 32.000 0.00 0.00 0.00 1.75
4080 4549 7.479980 TGGGAATCAATCAATCAAACGAATAC 58.520 34.615 0.00 0.00 0.00 1.89
4081 4550 7.121907 TGGGAATCAATCAATCAAACGAATACA 59.878 33.333 0.00 0.00 0.00 2.29
4082 4551 7.973388 GGGAATCAATCAATCAAACGAATACAA 59.027 33.333 0.00 0.00 0.00 2.41
4083 4552 8.798153 GGAATCAATCAATCAAACGAATACAAC 58.202 33.333 0.00 0.00 0.00 3.32
4084 4553 7.953305 ATCAATCAATCAAACGAATACAACG 57.047 32.000 0.00 0.00 0.00 4.10
4085 4554 6.893759 TCAATCAATCAAACGAATACAACGT 58.106 32.000 0.00 0.00 45.89 3.99
4086 4555 6.794636 TCAATCAATCAAACGAATACAACGTG 59.205 34.615 0.00 0.00 43.16 4.49
4087 4556 5.908916 TCAATCAAACGAATACAACGTGA 57.091 34.783 0.00 0.00 43.16 4.35
4088 4557 5.672051 TCAATCAAACGAATACAACGTGAC 58.328 37.500 0.00 0.00 43.16 3.67
4089 4558 5.234543 TCAATCAAACGAATACAACGTGACA 59.765 36.000 0.00 0.00 43.16 3.58
4090 4559 5.660629 ATCAAACGAATACAACGTGACAA 57.339 34.783 0.00 0.00 43.16 3.18
4091 4560 4.824301 TCAAACGAATACAACGTGACAAC 58.176 39.130 0.00 0.00 43.16 3.32
4092 4561 4.567558 TCAAACGAATACAACGTGACAACT 59.432 37.500 0.00 0.00 43.16 3.16
4093 4562 4.703899 AACGAATACAACGTGACAACTC 57.296 40.909 0.00 0.00 43.16 3.01
4094 4563 2.722629 ACGAATACAACGTGACAACTCG 59.277 45.455 0.00 0.00 42.37 4.18
4095 4564 2.722629 CGAATACAACGTGACAACTCGT 59.277 45.455 0.00 0.00 45.77 4.18
4096 4565 3.907788 CGAATACAACGTGACAACTCGTA 59.092 43.478 0.00 0.00 43.66 3.43
4097 4566 4.028757 CGAATACAACGTGACAACTCGTAG 59.971 45.833 0.00 0.00 43.66 3.51
4098 4567 2.857592 ACAACGTGACAACTCGTAGT 57.142 45.000 0.00 0.00 43.66 2.73
4099 4568 3.155093 ACAACGTGACAACTCGTAGTT 57.845 42.857 0.00 0.00 43.66 2.24
4100 4569 3.111098 ACAACGTGACAACTCGTAGTTC 58.889 45.455 0.00 0.00 43.66 3.01
4101 4570 3.181493 ACAACGTGACAACTCGTAGTTCT 60.181 43.478 0.00 0.00 43.66 3.01
4102 4571 3.265070 ACGTGACAACTCGTAGTTCTC 57.735 47.619 0.00 0.00 42.86 2.87
4103 4572 2.031333 ACGTGACAACTCGTAGTTCTCC 60.031 50.000 0.00 0.00 42.86 3.71
4104 4573 2.225963 CGTGACAACTCGTAGTTCTCCT 59.774 50.000 0.00 0.00 36.03 3.69
4105 4574 3.304525 CGTGACAACTCGTAGTTCTCCTT 60.305 47.826 0.00 0.00 36.03 3.36
4106 4575 3.982058 GTGACAACTCGTAGTTCTCCTTG 59.018 47.826 0.00 0.00 36.03 3.61
4107 4576 2.987821 GACAACTCGTAGTTCTCCTTGC 59.012 50.000 0.00 0.00 36.03 4.01
4108 4577 2.628657 ACAACTCGTAGTTCTCCTTGCT 59.371 45.455 0.00 0.00 36.03 3.91
4109 4578 3.825014 ACAACTCGTAGTTCTCCTTGCTA 59.175 43.478 0.00 0.00 36.03 3.49
4110 4579 4.280174 ACAACTCGTAGTTCTCCTTGCTAA 59.720 41.667 0.00 0.00 36.03 3.09
4111 4580 5.221382 ACAACTCGTAGTTCTCCTTGCTAAA 60.221 40.000 0.00 0.00 36.03 1.85
4112 4581 4.807443 ACTCGTAGTTCTCCTTGCTAAAC 58.193 43.478 0.00 0.00 0.00 2.01
4113 4582 3.829948 TCGTAGTTCTCCTTGCTAAACG 58.170 45.455 0.00 0.00 0.00 3.60
4114 4583 3.254166 TCGTAGTTCTCCTTGCTAAACGT 59.746 43.478 0.00 0.00 0.00 3.99
4115 4584 3.364023 CGTAGTTCTCCTTGCTAAACGTG 59.636 47.826 0.00 0.00 0.00 4.49
4116 4585 3.746045 AGTTCTCCTTGCTAAACGTGA 57.254 42.857 0.00 0.00 0.00 4.35
4117 4586 4.067972 AGTTCTCCTTGCTAAACGTGAA 57.932 40.909 0.00 0.00 0.00 3.18
4118 4587 4.448210 AGTTCTCCTTGCTAAACGTGAAA 58.552 39.130 0.00 0.00 0.00 2.69
4119 4588 4.879545 AGTTCTCCTTGCTAAACGTGAAAA 59.120 37.500 0.00 0.00 0.00 2.29
4120 4589 4.806342 TCTCCTTGCTAAACGTGAAAAC 57.194 40.909 0.00 0.00 0.00 2.43
4121 4590 4.448210 TCTCCTTGCTAAACGTGAAAACT 58.552 39.130 0.00 0.00 0.00 2.66
4122 4591 4.510340 TCTCCTTGCTAAACGTGAAAACTC 59.490 41.667 0.00 0.00 0.00 3.01
4123 4592 3.562557 TCCTTGCTAAACGTGAAAACTCC 59.437 43.478 0.00 0.00 0.00 3.85
4124 4593 3.564225 CCTTGCTAAACGTGAAAACTCCT 59.436 43.478 0.00 0.00 0.00 3.69
4125 4594 4.036380 CCTTGCTAAACGTGAAAACTCCTT 59.964 41.667 0.00 0.00 0.00 3.36
4126 4595 5.449999 CCTTGCTAAACGTGAAAACTCCTTT 60.450 40.000 0.00 0.00 0.00 3.11
4127 4596 5.164606 TGCTAAACGTGAAAACTCCTTTC 57.835 39.130 0.00 0.00 43.33 2.62
4128 4597 4.035909 TGCTAAACGTGAAAACTCCTTTCC 59.964 41.667 0.00 0.00 42.51 3.13
4129 4598 3.685836 AAACGTGAAAACTCCTTTCCG 57.314 42.857 0.00 0.00 42.51 4.30
4130 4599 2.607631 ACGTGAAAACTCCTTTCCGA 57.392 45.000 12.06 0.00 42.51 4.55
4131 4600 3.121738 ACGTGAAAACTCCTTTCCGAT 57.878 42.857 12.06 0.00 42.51 4.18
4132 4601 2.806244 ACGTGAAAACTCCTTTCCGATG 59.194 45.455 12.06 0.00 42.51 3.84
4133 4602 3.064207 CGTGAAAACTCCTTTCCGATGA 58.936 45.455 0.00 0.00 42.51 2.92
4134 4603 3.496884 CGTGAAAACTCCTTTCCGATGAA 59.503 43.478 0.00 0.00 42.51 2.57
4135 4604 4.024387 CGTGAAAACTCCTTTCCGATGAAA 60.024 41.667 0.00 0.00 42.51 2.69
4136 4605 5.504994 CGTGAAAACTCCTTTCCGATGAAAA 60.505 40.000 0.00 0.00 42.51 2.29
4137 4606 5.685954 GTGAAAACTCCTTTCCGATGAAAAC 59.314 40.000 0.00 0.00 42.51 2.43
4138 4607 4.483476 AAACTCCTTTCCGATGAAAACG 57.517 40.909 0.00 0.00 39.88 3.60
4139 4608 3.396260 ACTCCTTTCCGATGAAAACGA 57.604 42.857 0.00 0.00 39.88 3.85
4140 4609 3.939066 ACTCCTTTCCGATGAAAACGAT 58.061 40.909 0.00 0.00 39.88 3.73
4141 4610 5.080969 ACTCCTTTCCGATGAAAACGATA 57.919 39.130 0.00 0.00 39.88 2.92
4142 4611 5.109903 ACTCCTTTCCGATGAAAACGATAG 58.890 41.667 0.00 0.00 39.88 2.08
4143 4612 5.105473 ACTCCTTTCCGATGAAAACGATAGA 60.105 40.000 0.00 0.00 39.88 1.98
4144 4613 5.348986 TCCTTTCCGATGAAAACGATAGAG 58.651 41.667 0.00 0.00 39.88 2.43
4145 4614 5.126545 TCCTTTCCGATGAAAACGATAGAGA 59.873 40.000 0.00 0.00 39.88 3.10
4146 4615 5.460419 CCTTTCCGATGAAAACGATAGAGAG 59.540 44.000 0.00 0.00 39.88 3.20
4147 4616 5.830000 TTCCGATGAAAACGATAGAGAGA 57.170 39.130 0.00 0.00 41.38 3.10
4148 4617 5.425577 TCCGATGAAAACGATAGAGAGAG 57.574 43.478 0.00 0.00 41.38 3.20
4149 4618 5.123936 TCCGATGAAAACGATAGAGAGAGA 58.876 41.667 0.00 0.00 41.38 3.10
4150 4619 5.765677 TCCGATGAAAACGATAGAGAGAGAT 59.234 40.000 0.00 0.00 41.38 2.75
4151 4620 5.855925 CCGATGAAAACGATAGAGAGAGATG 59.144 44.000 0.00 0.00 41.38 2.90
4152 4621 6.434596 CGATGAAAACGATAGAGAGAGATGT 58.565 40.000 0.00 0.00 41.38 3.06
4153 4622 6.577055 CGATGAAAACGATAGAGAGAGATGTC 59.423 42.308 0.00 0.00 41.38 3.06
4154 4623 6.759497 TGAAAACGATAGAGAGAGATGTCA 57.241 37.500 0.00 0.00 41.38 3.58
4155 4624 7.158099 TGAAAACGATAGAGAGAGATGTCAA 57.842 36.000 0.00 0.00 41.38 3.18
4156 4625 7.030165 TGAAAACGATAGAGAGAGATGTCAAC 58.970 38.462 0.00 0.00 41.38 3.18
4157 4626 6.767524 AAACGATAGAGAGAGATGTCAACT 57.232 37.500 0.00 0.00 41.38 3.16
4158 4627 7.867305 AAACGATAGAGAGAGATGTCAACTA 57.133 36.000 0.00 0.00 41.38 2.24
4159 4628 7.867305 AACGATAGAGAGAGATGTCAACTAA 57.133 36.000 0.00 0.00 41.38 2.24
4160 4629 8.458573 AACGATAGAGAGAGATGTCAACTAAT 57.541 34.615 0.00 0.00 41.38 1.73
4161 4630 9.562408 AACGATAGAGAGAGATGTCAACTAATA 57.438 33.333 0.00 0.00 41.38 0.98
4162 4631 8.995220 ACGATAGAGAGAGATGTCAACTAATAC 58.005 37.037 0.00 0.00 41.38 1.89
4163 4632 9.214957 CGATAGAGAGAGATGTCAACTAATACT 57.785 37.037 0.00 0.00 39.76 2.12
4174 4643 9.916397 GATGTCAACTAATACTAAATGTTTCCG 57.084 33.333 0.00 0.00 0.00 4.30
4175 4644 9.661563 ATGTCAACTAATACTAAATGTTTCCGA 57.338 29.630 0.00 0.00 0.00 4.55
4176 4645 9.661563 TGTCAACTAATACTAAATGTTTCCGAT 57.338 29.630 0.00 0.00 0.00 4.18
4177 4646 9.916397 GTCAACTAATACTAAATGTTTCCGATG 57.084 33.333 0.00 0.00 0.00 3.84
4178 4647 9.878667 TCAACTAATACTAAATGTTTCCGATGA 57.121 29.630 0.00 0.00 0.00 2.92
4183 4652 8.889849 AATACTAAATGTTTCCGATGAAAACG 57.110 30.769 0.00 0.00 41.92 3.60
4184 4653 6.548441 ACTAAATGTTTCCGATGAAAACGA 57.452 33.333 0.00 0.00 41.92 3.85
4185 4654 7.141100 ACTAAATGTTTCCGATGAAAACGAT 57.859 32.000 0.00 0.00 41.92 3.73
4186 4655 8.259049 ACTAAATGTTTCCGATGAAAACGATA 57.741 30.769 0.00 0.00 41.92 2.92
4187 4656 8.388103 ACTAAATGTTTCCGATGAAAACGATAG 58.612 33.333 0.00 0.00 41.92 2.08
4188 4657 6.978343 AATGTTTCCGATGAAAACGATAGA 57.022 33.333 0.00 0.00 41.92 1.98
4189 4658 6.589830 ATGTTTCCGATGAAAACGATAGAG 57.410 37.500 0.00 0.00 41.92 2.43
4190 4659 5.716094 TGTTTCCGATGAAAACGATAGAGA 58.284 37.500 0.00 0.00 41.92 3.10
4191 4660 5.805486 TGTTTCCGATGAAAACGATAGAGAG 59.195 40.000 0.00 0.00 41.92 3.20
4192 4661 5.830000 TTCCGATGAAAACGATAGAGAGA 57.170 39.130 0.00 0.00 41.38 3.10
4193 4662 5.425577 TCCGATGAAAACGATAGAGAGAG 57.574 43.478 0.00 0.00 41.38 3.20
4194 4663 5.123936 TCCGATGAAAACGATAGAGAGAGA 58.876 41.667 0.00 0.00 41.38 3.10
4195 4664 5.765677 TCCGATGAAAACGATAGAGAGAGAT 59.234 40.000 0.00 0.00 41.38 2.75
4196 4665 5.855925 CCGATGAAAACGATAGAGAGAGATG 59.144 44.000 0.00 0.00 41.38 2.90
4197 4666 6.434596 CGATGAAAACGATAGAGAGAGATGT 58.565 40.000 0.00 0.00 41.38 3.06
4198 4667 6.577055 CGATGAAAACGATAGAGAGAGATGTC 59.423 42.308 0.00 0.00 41.38 3.06
4199 4668 6.759497 TGAAAACGATAGAGAGAGATGTCA 57.241 37.500 0.00 0.00 41.38 3.58
4200 4669 7.158099 TGAAAACGATAGAGAGAGATGTCAA 57.842 36.000 0.00 0.00 41.38 3.18
4201 4670 7.030165 TGAAAACGATAGAGAGAGATGTCAAC 58.970 38.462 0.00 0.00 41.38 3.18
4202 4671 6.767524 AAACGATAGAGAGAGATGTCAACT 57.232 37.500 0.00 0.00 41.38 3.16
4203 4672 7.867305 AAACGATAGAGAGAGATGTCAACTA 57.133 36.000 0.00 0.00 41.38 2.24
4204 4673 7.867305 AACGATAGAGAGAGATGTCAACTAA 57.133 36.000 0.00 0.00 41.38 2.24
4205 4674 7.867305 ACGATAGAGAGAGATGTCAACTAAA 57.133 36.000 0.00 0.00 41.38 1.85
4206 4675 8.458573 ACGATAGAGAGAGATGTCAACTAAAT 57.541 34.615 0.00 0.00 41.38 1.40
4207 4676 8.349245 ACGATAGAGAGAGATGTCAACTAAATG 58.651 37.037 0.00 0.00 41.38 2.32
4208 4677 8.349245 CGATAGAGAGAGATGTCAACTAAATGT 58.651 37.037 0.00 0.00 39.76 2.71
4209 4678 9.462174 GATAGAGAGAGATGTCAACTAAATGTG 57.538 37.037 0.00 0.00 0.00 3.21
4210 4679 6.105333 AGAGAGAGATGTCAACTAAATGTGC 58.895 40.000 0.00 0.00 0.00 4.57
4211 4680 6.047511 AGAGAGATGTCAACTAAATGTGCT 57.952 37.500 0.00 0.00 0.00 4.40
4212 4681 5.873712 AGAGAGATGTCAACTAAATGTGCTG 59.126 40.000 0.00 0.00 0.00 4.41
4213 4682 4.394300 AGAGATGTCAACTAAATGTGCTGC 59.606 41.667 0.00 0.00 0.00 5.25
4214 4683 4.330250 AGATGTCAACTAAATGTGCTGCT 58.670 39.130 0.00 0.00 0.00 4.24
4215 4684 4.763793 AGATGTCAACTAAATGTGCTGCTT 59.236 37.500 0.00 0.00 0.00 3.91
4216 4685 4.916983 TGTCAACTAAATGTGCTGCTTT 57.083 36.364 0.00 0.00 0.00 3.51
4217 4686 4.609947 TGTCAACTAAATGTGCTGCTTTG 58.390 39.130 0.00 0.00 0.00 2.77
4218 4687 4.097741 TGTCAACTAAATGTGCTGCTTTGT 59.902 37.500 0.00 0.00 0.00 2.83
4219 4688 4.442073 GTCAACTAAATGTGCTGCTTTGTG 59.558 41.667 0.00 0.00 0.00 3.33
4220 4689 3.648339 ACTAAATGTGCTGCTTTGTGG 57.352 42.857 0.00 0.00 0.00 4.17
4221 4690 2.297033 ACTAAATGTGCTGCTTTGTGGG 59.703 45.455 0.00 0.00 0.00 4.61
4222 4691 1.122227 AAATGTGCTGCTTTGTGGGT 58.878 45.000 0.00 0.00 0.00 4.51
4223 4692 1.122227 AATGTGCTGCTTTGTGGGTT 58.878 45.000 0.00 0.00 0.00 4.11
4224 4693 1.122227 ATGTGCTGCTTTGTGGGTTT 58.878 45.000 0.00 0.00 0.00 3.27
4225 4694 0.175302 TGTGCTGCTTTGTGGGTTTG 59.825 50.000 0.00 0.00 0.00 2.93
4226 4695 0.459489 GTGCTGCTTTGTGGGTTTGA 59.541 50.000 0.00 0.00 0.00 2.69
4227 4696 1.069049 GTGCTGCTTTGTGGGTTTGAT 59.931 47.619 0.00 0.00 0.00 2.57
4228 4697 2.295909 GTGCTGCTTTGTGGGTTTGATA 59.704 45.455 0.00 0.00 0.00 2.15
4229 4698 2.295909 TGCTGCTTTGTGGGTTTGATAC 59.704 45.455 0.00 0.00 0.00 2.24
4230 4699 2.558359 GCTGCTTTGTGGGTTTGATACT 59.442 45.455 0.00 0.00 0.00 2.12
4231 4700 3.756434 GCTGCTTTGTGGGTTTGATACTA 59.244 43.478 0.00 0.00 0.00 1.82
4232 4701 4.217550 GCTGCTTTGTGGGTTTGATACTAA 59.782 41.667 0.00 0.00 0.00 2.24
4233 4702 5.699097 TGCTTTGTGGGTTTGATACTAAC 57.301 39.130 0.00 0.00 0.00 2.34
4234 4703 5.133941 TGCTTTGTGGGTTTGATACTAACA 58.866 37.500 0.00 0.00 0.00 2.41
4235 4704 5.594725 TGCTTTGTGGGTTTGATACTAACAA 59.405 36.000 0.00 0.00 33.34 2.83
4236 4705 6.096987 TGCTTTGTGGGTTTGATACTAACAAA 59.903 34.615 0.00 0.00 38.50 2.83
4237 4706 6.981559 GCTTTGTGGGTTTGATACTAACAAAA 59.018 34.615 0.00 0.00 39.36 2.44
4238 4707 7.655732 GCTTTGTGGGTTTGATACTAACAAAAT 59.344 33.333 0.00 0.00 39.36 1.82
4240 4709 9.968870 TTTGTGGGTTTGATACTAACAAAATAC 57.031 29.630 0.00 0.00 38.19 1.89
4241 4710 8.693120 TGTGGGTTTGATACTAACAAAATACA 57.307 30.769 0.00 0.00 38.63 2.29
4242 4711 8.569641 TGTGGGTTTGATACTAACAAAATACAC 58.430 33.333 0.09 0.09 38.63 2.90
4243 4712 8.569641 GTGGGTTTGATACTAACAAAATACACA 58.430 33.333 1.26 0.00 38.63 3.72
4244 4713 9.132923 TGGGTTTGATACTAACAAAATACACAA 57.867 29.630 0.00 0.00 38.63 3.33
4245 4714 9.620660 GGGTTTGATACTAACAAAATACACAAG 57.379 33.333 0.00 0.00 38.63 3.16
4253 4722 8.920509 ACTAACAAAATACACAAGAAACCAAC 57.079 30.769 0.00 0.00 0.00 3.77
4254 4723 8.524487 ACTAACAAAATACACAAGAAACCAACA 58.476 29.630 0.00 0.00 0.00 3.33
4255 4724 9.360093 CTAACAAAATACACAAGAAACCAACAA 57.640 29.630 0.00 0.00 0.00 2.83
4256 4725 8.608844 AACAAAATACACAAGAAACCAACAAA 57.391 26.923 0.00 0.00 0.00 2.83
4257 4726 8.608844 ACAAAATACACAAGAAACCAACAAAA 57.391 26.923 0.00 0.00 0.00 2.44
4258 4727 9.057089 ACAAAATACACAAGAAACCAACAAAAA 57.943 25.926 0.00 0.00 0.00 1.94
4259 4728 9.323963 CAAAATACACAAGAAACCAACAAAAAC 57.676 29.630 0.00 0.00 0.00 2.43
4260 4729 8.840833 AAATACACAAGAAACCAACAAAAACT 57.159 26.923 0.00 0.00 0.00 2.66
4261 4730 8.840833 AATACACAAGAAACCAACAAAAACTT 57.159 26.923 0.00 0.00 0.00 2.66
4262 4731 6.538189 ACACAAGAAACCAACAAAAACTTG 57.462 33.333 0.00 0.00 39.02 3.16
4263 4732 6.284459 ACACAAGAAACCAACAAAAACTTGA 58.716 32.000 0.00 0.00 37.34 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
174 177 0.250295 TGGGCTTTCGAACTGGTGAG 60.250 55.000 0.00 0.00 0.00 3.51
175 178 0.181587 TTGGGCTTTCGAACTGGTGA 59.818 50.000 0.00 0.00 0.00 4.02
177 180 1.172812 GCTTGGGCTTTCGAACTGGT 61.173 55.000 0.00 0.00 35.22 4.00
245 248 2.269241 GGGAGGAAACGGCAGGAG 59.731 66.667 0.00 0.00 0.00 3.69
246 249 3.327404 GGGGAGGAAACGGCAGGA 61.327 66.667 0.00 0.00 0.00 3.86
247 250 2.706952 TTTGGGGAGGAAACGGCAGG 62.707 60.000 0.00 0.00 0.00 4.85
248 251 0.611896 ATTTGGGGAGGAAACGGCAG 60.612 55.000 0.00 0.00 0.00 4.85
249 252 0.610785 GATTTGGGGAGGAAACGGCA 60.611 55.000 0.00 0.00 0.00 5.69
250 253 0.610785 TGATTTGGGGAGGAAACGGC 60.611 55.000 0.00 0.00 0.00 5.68
251 254 1.917872 TTGATTTGGGGAGGAAACGG 58.082 50.000 0.00 0.00 0.00 4.44
252 255 3.763897 AGATTTGATTTGGGGAGGAAACG 59.236 43.478 0.00 0.00 0.00 3.60
253 256 4.142381 CGAGATTTGATTTGGGGAGGAAAC 60.142 45.833 0.00 0.00 0.00 2.78
262 265 1.678101 GGGAGGCGAGATTTGATTTGG 59.322 52.381 0.00 0.00 0.00 3.28
279 282 1.007238 AGGAGAATTGAGAGACGGGGA 59.993 52.381 0.00 0.00 0.00 4.81
282 285 1.066303 CGGAGGAGAATTGAGAGACGG 59.934 57.143 0.00 0.00 0.00 4.79
284 287 4.664150 AATCGGAGGAGAATTGAGAGAC 57.336 45.455 0.00 0.00 0.00 3.36
287 290 4.827835 ACGATAATCGGAGGAGAATTGAGA 59.172 41.667 0.00 0.00 45.59 3.27
343 346 1.308216 CAGGAGGGGATGAAGGGGT 60.308 63.158 0.00 0.00 0.00 4.95
382 385 1.202879 AGGCACAAGAAATCCCGTCAA 60.203 47.619 0.00 0.00 0.00 3.18
394 397 1.089920 CCCGAGAATTCAGGCACAAG 58.910 55.000 8.44 0.00 0.00 3.16
400 403 3.812053 CAGATTTAGCCCGAGAATTCAGG 59.188 47.826 8.44 10.36 0.00 3.86
435 438 4.171663 TCACTACGCACGGTAACAATTA 57.828 40.909 0.00 0.00 0.00 1.40
463 466 2.084610 TCACAACGATCCAGAAGCAG 57.915 50.000 0.00 0.00 0.00 4.24
487 490 0.174845 CCTATCAAACCAGTCGCGGA 59.825 55.000 6.13 0.00 0.00 5.54
531 534 1.737793 CATACACGAAACCCAGGCTTC 59.262 52.381 0.00 0.00 0.00 3.86
544 547 1.258427 CCGCATGCAAAACATACACG 58.742 50.000 19.57 0.00 36.64 4.49
608 611 4.085733 AGCATCGGATCTAGTAATCTGCT 58.914 43.478 0.00 0.00 32.75 4.24
615 618 3.384789 ACTGCAAAGCATCGGATCTAGTA 59.615 43.478 0.00 0.00 38.13 1.82
616 619 2.169352 ACTGCAAAGCATCGGATCTAGT 59.831 45.455 0.00 0.00 38.13 2.57
617 620 2.831333 ACTGCAAAGCATCGGATCTAG 58.169 47.619 0.00 0.00 38.13 2.43
653 656 1.961277 CCCGCATATCCGAGGCAAC 60.961 63.158 0.00 0.00 33.22 4.17
657 660 3.625897 TGCCCCGCATATCCGAGG 61.626 66.667 0.00 0.00 31.71 4.63
687 690 7.229506 ACACTAGCATATTAAGAAGGCCAATTC 59.770 37.037 5.01 0.00 0.00 2.17
720 724 6.826893 AAACAGGTTTGATTTCGAATTGTG 57.173 33.333 0.00 0.00 0.00 3.33
728 732 7.568679 GCAAATACCGAAAACAGGTTTGATTTC 60.569 37.037 0.00 1.58 42.81 2.17
754 758 5.589192 ACTGTAATTCTTTCCGATAGACCG 58.411 41.667 0.00 0.00 39.76 4.79
794 950 3.857157 TCCACAAGGAAAGCACTACTT 57.143 42.857 0.00 0.00 42.23 2.24
827 984 2.410392 TCGACGCACAAATACACATGTC 59.590 45.455 0.00 0.00 0.00 3.06
897 1056 6.409579 GCCCCAAATCATTTCTTTCCCAATAT 60.410 38.462 0.00 0.00 0.00 1.28
903 1065 2.495669 TCGCCCCAAATCATTTCTTTCC 59.504 45.455 0.00 0.00 0.00 3.13
908 1070 0.817013 TGCTCGCCCCAAATCATTTC 59.183 50.000 0.00 0.00 0.00 2.17
981 1147 5.344933 CGTCATCTTCACAGTTCACGATTTA 59.655 40.000 0.00 0.00 0.00 1.40
1056 1222 1.315981 CGTACCTCTCAGCCTGCTCA 61.316 60.000 0.00 0.00 0.00 4.26
1221 1387 1.077625 ACGGCTCTCCTCCTTCTGT 59.922 57.895 0.00 0.00 0.00 3.41
1380 1546 8.840200 AGTAGTCACCCTTCATCTTAAGATAA 57.160 34.615 17.53 0.08 32.63 1.75
1616 1886 9.820725 AAACATTCAACAAATTCAGAAGAATGA 57.179 25.926 19.80 5.59 43.52 2.57
1707 2069 4.142790 CTCAGCCAAAGCAATATCCTGAT 58.857 43.478 0.00 0.00 43.56 2.90
1831 2193 5.990668 ACTGACTCAGAAAAACTAACCTGT 58.009 37.500 13.25 0.00 35.18 4.00
1914 2284 1.207593 CTAGCACGGCACAAGCAAC 59.792 57.895 0.00 0.00 44.61 4.17
1924 2294 9.856488 ATTACATTTATAGTGTATCTAGCACGG 57.144 33.333 0.00 0.00 41.36 4.94
2015 2436 7.382218 TCTGCATGTATTACGAGACACATTATG 59.618 37.037 0.00 0.00 28.30 1.90
2024 2445 8.023706 GTCATAAGATCTGCATGTATTACGAGA 58.976 37.037 14.23 0.00 0.00 4.04
2043 2464 4.877823 TGCTGCTGGTCTATTTGTCATAAG 59.122 41.667 0.00 0.00 0.00 1.73
2050 2471 4.178540 CCAAATTGCTGCTGGTCTATTTG 58.821 43.478 0.00 7.36 34.44 2.32
2151 2576 9.693157 CTTTTGCATGCTTAAAAATTGCTATAC 57.307 29.630 20.33 0.00 34.47 1.47
2184 2609 3.499338 TGCACCCTCAAATGTCTCATTT 58.501 40.909 2.42 2.42 0.00 2.32
2238 2663 9.109393 TCTCCAGTTGTGAAGTTTTATATATGC 57.891 33.333 0.00 0.00 0.00 3.14
2253 2678 7.274904 CAGATTGCATTATTTTCTCCAGTTGTG 59.725 37.037 0.00 0.00 0.00 3.33
2327 2752 1.166531 ACAAGCAAAGAGTGTCCGCC 61.167 55.000 0.00 0.00 0.00 6.13
2332 2757 3.504906 CCATGATCACAAGCAAAGAGTGT 59.495 43.478 0.00 0.00 34.94 3.55
2335 2760 3.754850 TGTCCATGATCACAAGCAAAGAG 59.245 43.478 0.00 0.00 0.00 2.85
2337 2762 3.754850 TCTGTCCATGATCACAAGCAAAG 59.245 43.478 0.00 0.00 0.00 2.77
2372 2797 9.703892 TCAAATGACCAAAACAAACTAATATGG 57.296 29.630 0.00 0.00 0.00 2.74
2414 2840 6.038714 CCACAGCTAAAGATAATGGAAGTTCC 59.961 42.308 15.50 15.50 36.96 3.62
2415 2841 6.599638 ACCACAGCTAAAGATAATGGAAGTTC 59.400 38.462 5.07 0.00 0.00 3.01
2416 2842 6.485171 ACCACAGCTAAAGATAATGGAAGTT 58.515 36.000 5.07 0.00 0.00 2.66
2417 2843 6.067217 ACCACAGCTAAAGATAATGGAAGT 57.933 37.500 5.07 0.00 0.00 3.01
2418 2844 6.259608 CAGACCACAGCTAAAGATAATGGAAG 59.740 42.308 5.07 0.00 0.00 3.46
2425 2851 3.706594 CTCCCAGACCACAGCTAAAGATA 59.293 47.826 0.00 0.00 0.00 1.98
2449 2875 5.609423 ACAAGCAATGCAAGGATTTTGTTA 58.391 33.333 8.35 0.00 0.00 2.41
2575 3020 4.155099 CACTGGCGTTCAACCAATAATACA 59.845 41.667 0.00 0.00 36.56 2.29
2702 3147 8.177119 TGCTACAACTGTGGAAGATTATTTTT 57.823 30.769 0.00 0.00 0.00 1.94
2717 3163 1.537202 GGCCAAGTTCTGCTACAACTG 59.463 52.381 0.00 0.00 34.21 3.16
2967 3413 5.185454 TCGAATGCCTGTAGAATCAAATGT 58.815 37.500 0.00 0.00 0.00 2.71
3016 3462 3.513912 TCCTTGTAGGATTCTTCGCTCAA 59.486 43.478 0.00 0.00 40.06 3.02
3108 3554 0.878416 AAAGGTGCGCTTGCGAAATA 59.122 45.000 19.55 0.00 43.34 1.40
3123 3569 6.954944 TCAAAGAACACGACAAGATAAAAGG 58.045 36.000 0.00 0.00 0.00 3.11
3145 3592 1.077005 CAAGGGGGAAGGATGGTTTCA 59.923 52.381 0.00 0.00 0.00 2.69
3146 3593 1.357761 TCAAGGGGGAAGGATGGTTTC 59.642 52.381 0.00 0.00 0.00 2.78
3156 3603 1.138568 TACGGTTGTTCAAGGGGGAA 58.861 50.000 0.00 0.00 0.00 3.97
3160 3607 0.869730 CGGTTACGGTTGTTCAAGGG 59.130 55.000 0.00 0.00 36.18 3.95
3236 3683 0.809241 CCTCGCTGGAGTCATGCTTC 60.809 60.000 0.00 0.00 38.70 3.86
3240 3687 2.503061 CCCCTCGCTGGAGTCATG 59.497 66.667 0.00 0.00 38.70 3.07
3248 3695 2.109126 GCTTTACTGCCCCTCGCTG 61.109 63.158 0.00 0.00 41.91 5.18
3278 3725 2.900273 CTAGTAGCTTGCGGGGCA 59.100 61.111 0.00 0.00 36.47 5.36
3363 3810 3.389002 GGAGCCCCAAATCTTGCAATAAT 59.611 43.478 0.00 0.00 0.00 1.28
3366 3813 1.197812 GGAGCCCCAAATCTTGCAAT 58.802 50.000 0.00 0.00 0.00 3.56
3444 3892 2.900106 GCCAGACCAAGGAGGCAGT 61.900 63.158 13.99 0.00 46.26 4.40
3542 3994 1.593787 CCAGACACAGACGCAGGAT 59.406 57.895 0.00 0.00 0.00 3.24
3586 4039 2.563702 GAGTACACCCCACGAAAAACA 58.436 47.619 0.00 0.00 0.00 2.83
3600 4053 1.404181 GCCAGATTCAGTGCGAGTACA 60.404 52.381 0.00 0.00 0.00 2.90
3634 4087 3.957497 CGGACAATCCCATTTCCCAAATA 59.043 43.478 0.00 0.00 31.13 1.40
3637 4090 1.618345 CCGGACAATCCCATTTCCCAA 60.618 52.381 0.00 0.00 31.13 4.12
3644 4097 0.407918 AACAACCCGGACAATCCCAT 59.592 50.000 0.73 0.00 31.13 4.00
3653 4106 2.281208 CGGAGCAAACAACCCGGA 60.281 61.111 0.73 0.00 38.42 5.14
3690 4150 4.688063 CTGCGTCCATCGAATAATTAACG 58.312 43.478 0.00 8.47 42.86 3.18
3718 4181 7.384115 CGTCTGTTTAAGAATTTCAGGTACAGA 59.616 37.037 14.81 14.81 36.40 3.41
3735 4198 1.927487 TGGGCTAGGACGTCTGTTTA 58.073 50.000 16.46 2.86 0.00 2.01
3755 4218 0.264955 AATTAGGGAGAGGGCGGAGA 59.735 55.000 0.00 0.00 0.00 3.71
3760 4223 0.763223 TCGGGAATTAGGGAGAGGGC 60.763 60.000 0.00 0.00 0.00 5.19
3761 4224 1.049402 GTCGGGAATTAGGGAGAGGG 58.951 60.000 0.00 0.00 0.00 4.30
3777 4240 1.142748 CAGCTAAGGGCAGGAGTCG 59.857 63.158 0.00 0.00 44.79 4.18
3827 4291 3.064324 GCATTCCGCCCAACAGCT 61.064 61.111 0.00 0.00 32.94 4.24
3830 4294 0.316841 GAAAAGCATTCCGCCCAACA 59.683 50.000 0.00 0.00 44.04 3.33
3834 4298 1.401905 CTACAGAAAAGCATTCCGCCC 59.598 52.381 0.00 0.00 44.04 6.13
3844 4308 2.159379 GCCGCAAATCCCTACAGAAAAG 60.159 50.000 0.00 0.00 0.00 2.27
3870 4334 1.208358 CAACACTCGCACATGCTGG 59.792 57.895 1.82 0.00 39.32 4.85
3871 4335 0.800631 ATCAACACTCGCACATGCTG 59.199 50.000 1.82 0.00 39.32 4.41
3872 4336 1.081892 GATCAACACTCGCACATGCT 58.918 50.000 1.82 0.00 39.32 3.79
3879 4343 1.284982 ACGCACAGATCAACACTCGC 61.285 55.000 0.00 0.00 0.00 5.03
3880 4344 0.710567 GACGCACAGATCAACACTCG 59.289 55.000 0.00 0.00 0.00 4.18
3882 4346 1.502231 GTGACGCACAGATCAACACT 58.498 50.000 0.00 0.00 34.08 3.55
3883 4347 0.161658 CGTGACGCACAGATCAACAC 59.838 55.000 9.95 0.00 33.40 3.32
3884 4348 2.516486 CGTGACGCACAGATCAACA 58.484 52.632 9.95 0.00 33.40 3.33
3914 4378 2.124612 CCTCCGCCACATGCATCA 60.125 61.111 0.00 0.00 41.33 3.07
3917 4381 4.783621 GAGCCTCCGCCACATGCA 62.784 66.667 0.00 0.00 41.33 3.96
3934 4398 2.587194 CAATCAGGCTCCGCTCCG 60.587 66.667 0.00 0.00 0.00 4.63
3935 4399 2.899339 GCAATCAGGCTCCGCTCC 60.899 66.667 0.00 0.00 0.00 4.70
3936 4400 2.899339 GGCAATCAGGCTCCGCTC 60.899 66.667 0.00 0.00 40.24 5.03
3937 4401 4.496336 GGGCAATCAGGCTCCGCT 62.496 66.667 0.00 0.00 43.56 5.52
3972 4436 1.358046 GAAATCATGGCCGAGCAGC 59.642 57.895 0.00 0.00 0.00 5.25
3974 4438 0.464373 GAGGAAATCATGGCCGAGCA 60.464 55.000 0.00 0.00 0.00 4.26
3975 4439 0.179034 AGAGGAAATCATGGCCGAGC 60.179 55.000 0.00 0.00 0.00 5.03
3976 4440 2.216898 GAAGAGGAAATCATGGCCGAG 58.783 52.381 0.00 0.00 0.00 4.63
3977 4441 1.134098 GGAAGAGGAAATCATGGCCGA 60.134 52.381 0.00 0.00 0.00 5.54
3979 4443 1.312815 CGGAAGAGGAAATCATGGCC 58.687 55.000 0.00 0.00 0.00 5.36
3982 4446 5.886960 AAAGAACGGAAGAGGAAATCATG 57.113 39.130 0.00 0.00 0.00 3.07
3983 4447 6.901081 AAAAAGAACGGAAGAGGAAATCAT 57.099 33.333 0.00 0.00 0.00 2.45
4005 4474 6.040842 CCTCACCCTCAATCTTCAAAAAGAAA 59.959 38.462 0.00 0.00 44.49 2.52
4010 4479 4.722526 TCCTCACCCTCAATCTTCAAAA 57.277 40.909 0.00 0.00 0.00 2.44
4014 4483 4.769345 AGATTCCTCACCCTCAATCTTC 57.231 45.455 0.00 0.00 32.72 2.87
4016 4485 4.163839 CAGAAGATTCCTCACCCTCAATCT 59.836 45.833 0.00 0.00 37.22 2.40
4025 4494 5.290643 CAGAAACGATCAGAAGATTCCTCAC 59.709 44.000 0.00 0.00 33.72 3.51
4026 4495 5.047021 ACAGAAACGATCAGAAGATTCCTCA 60.047 40.000 0.00 0.00 33.72 3.86
4027 4496 5.415221 ACAGAAACGATCAGAAGATTCCTC 58.585 41.667 0.00 0.00 33.72 3.71
4028 4497 5.413309 ACAGAAACGATCAGAAGATTCCT 57.587 39.130 0.00 0.00 33.72 3.36
4029 4498 6.590292 TGTTACAGAAACGATCAGAAGATTCC 59.410 38.462 0.00 0.00 41.30 3.01
4030 4499 7.582435 TGTTACAGAAACGATCAGAAGATTC 57.418 36.000 0.00 0.00 41.30 2.52
4031 4500 7.065085 CCATGTTACAGAAACGATCAGAAGATT 59.935 37.037 0.00 0.00 41.30 2.40
4032 4501 6.536582 CCATGTTACAGAAACGATCAGAAGAT 59.463 38.462 0.00 0.00 41.30 2.40
4033 4502 5.869344 CCATGTTACAGAAACGATCAGAAGA 59.131 40.000 0.00 0.00 41.30 2.87
4034 4503 5.063944 CCCATGTTACAGAAACGATCAGAAG 59.936 44.000 0.00 0.00 41.30 2.85
4035 4504 4.935205 CCCATGTTACAGAAACGATCAGAA 59.065 41.667 0.00 0.00 41.30 3.02
4036 4505 4.221924 TCCCATGTTACAGAAACGATCAGA 59.778 41.667 0.00 0.00 41.30 3.27
4037 4506 4.503910 TCCCATGTTACAGAAACGATCAG 58.496 43.478 0.00 0.00 41.30 2.90
4038 4507 4.545208 TCCCATGTTACAGAAACGATCA 57.455 40.909 0.00 0.00 41.30 2.92
4039 4508 5.584649 TGATTCCCATGTTACAGAAACGATC 59.415 40.000 0.00 0.00 41.30 3.69
4040 4509 5.496556 TGATTCCCATGTTACAGAAACGAT 58.503 37.500 0.00 0.00 41.30 3.73
4041 4510 4.900684 TGATTCCCATGTTACAGAAACGA 58.099 39.130 0.00 0.00 41.30 3.85
4042 4511 5.621197 TTGATTCCCATGTTACAGAAACG 57.379 39.130 0.00 0.00 41.30 3.60
4043 4512 7.156876 TGATTGATTCCCATGTTACAGAAAC 57.843 36.000 0.00 0.00 38.67 2.78
4044 4513 7.773489 TTGATTGATTCCCATGTTACAGAAA 57.227 32.000 0.00 0.00 0.00 2.52
4045 4514 7.614974 TGATTGATTGATTCCCATGTTACAGAA 59.385 33.333 0.00 0.00 0.00 3.02
4046 4515 7.118060 TGATTGATTGATTCCCATGTTACAGA 58.882 34.615 0.00 0.00 0.00 3.41
4047 4516 7.337480 TGATTGATTGATTCCCATGTTACAG 57.663 36.000 0.00 0.00 0.00 2.74
4048 4517 7.715266 TTGATTGATTGATTCCCATGTTACA 57.285 32.000 0.00 0.00 0.00 2.41
4049 4518 7.220683 CGTTTGATTGATTGATTCCCATGTTAC 59.779 37.037 0.00 0.00 0.00 2.50
4050 4519 7.121907 TCGTTTGATTGATTGATTCCCATGTTA 59.878 33.333 0.00 0.00 0.00 2.41
4051 4520 6.071447 TCGTTTGATTGATTGATTCCCATGTT 60.071 34.615 0.00 0.00 0.00 2.71
4052 4521 5.418524 TCGTTTGATTGATTGATTCCCATGT 59.581 36.000 0.00 0.00 0.00 3.21
4053 4522 5.893687 TCGTTTGATTGATTGATTCCCATG 58.106 37.500 0.00 0.00 0.00 3.66
4054 4523 6.528537 TTCGTTTGATTGATTGATTCCCAT 57.471 33.333 0.00 0.00 0.00 4.00
4055 4524 5.973899 TTCGTTTGATTGATTGATTCCCA 57.026 34.783 0.00 0.00 0.00 4.37
4056 4525 7.479980 TGTATTCGTTTGATTGATTGATTCCC 58.520 34.615 0.00 0.00 0.00 3.97
4057 4526 8.798153 GTTGTATTCGTTTGATTGATTGATTCC 58.202 33.333 0.00 0.00 0.00 3.01
4058 4527 8.515473 CGTTGTATTCGTTTGATTGATTGATTC 58.485 33.333 0.00 0.00 0.00 2.52
4059 4528 8.020819 ACGTTGTATTCGTTTGATTGATTGATT 58.979 29.630 0.00 0.00 38.38 2.57
4060 4529 7.481483 CACGTTGTATTCGTTTGATTGATTGAT 59.519 33.333 0.00 0.00 39.55 2.57
4061 4530 6.794636 CACGTTGTATTCGTTTGATTGATTGA 59.205 34.615 0.00 0.00 39.55 2.57
4062 4531 6.794636 TCACGTTGTATTCGTTTGATTGATTG 59.205 34.615 0.00 0.00 39.55 2.67
4063 4532 6.795114 GTCACGTTGTATTCGTTTGATTGATT 59.205 34.615 0.00 0.00 39.55 2.57
4064 4533 6.073494 TGTCACGTTGTATTCGTTTGATTGAT 60.073 34.615 0.00 0.00 39.55 2.57
4065 4534 5.234543 TGTCACGTTGTATTCGTTTGATTGA 59.765 36.000 0.00 0.00 39.55 2.57
4066 4535 5.436410 TGTCACGTTGTATTCGTTTGATTG 58.564 37.500 0.00 0.00 39.55 2.67
4067 4536 5.660629 TGTCACGTTGTATTCGTTTGATT 57.339 34.783 0.00 0.00 39.55 2.57
4068 4537 5.235616 AGTTGTCACGTTGTATTCGTTTGAT 59.764 36.000 0.00 0.00 39.55 2.57
4069 4538 4.567558 AGTTGTCACGTTGTATTCGTTTGA 59.432 37.500 0.00 0.00 39.55 2.69
4070 4539 4.828704 AGTTGTCACGTTGTATTCGTTTG 58.171 39.130 0.00 0.00 39.55 2.93
4071 4540 4.317558 CGAGTTGTCACGTTGTATTCGTTT 60.318 41.667 0.00 0.00 39.55 3.60
4072 4541 3.180980 CGAGTTGTCACGTTGTATTCGTT 59.819 43.478 0.00 0.00 39.55 3.85
4073 4542 2.722629 CGAGTTGTCACGTTGTATTCGT 59.277 45.455 0.00 0.00 42.33 3.85
4074 4543 2.722629 ACGAGTTGTCACGTTGTATTCG 59.277 45.455 0.00 0.00 37.58 3.34
4075 4544 4.913924 ACTACGAGTTGTCACGTTGTATTC 59.086 41.667 0.00 0.00 41.87 1.75
4076 4545 4.863491 ACTACGAGTTGTCACGTTGTATT 58.137 39.130 0.00 0.00 41.87 1.89
4077 4546 4.494350 ACTACGAGTTGTCACGTTGTAT 57.506 40.909 0.00 0.00 41.87 2.29
4078 4547 3.969117 ACTACGAGTTGTCACGTTGTA 57.031 42.857 0.00 0.00 41.87 2.41
4079 4548 2.857592 ACTACGAGTTGTCACGTTGT 57.142 45.000 0.00 0.00 40.06 3.32
4080 4549 3.369385 AGAACTACGAGTTGTCACGTTG 58.631 45.455 0.00 0.00 38.80 4.10
4081 4550 3.549625 GGAGAACTACGAGTTGTCACGTT 60.550 47.826 19.09 0.00 46.65 3.99
4082 4551 2.031333 GGAGAACTACGAGTTGTCACGT 60.031 50.000 19.09 0.00 46.65 4.49
4083 4552 2.225963 AGGAGAACTACGAGTTGTCACG 59.774 50.000 19.09 0.00 46.65 4.35
4084 4553 3.919223 AGGAGAACTACGAGTTGTCAC 57.081 47.619 19.09 12.21 46.65 3.67
4085 4554 3.552273 GCAAGGAGAACTACGAGTTGTCA 60.552 47.826 19.09 0.00 46.65 3.58
4086 4555 2.987821 GCAAGGAGAACTACGAGTTGTC 59.012 50.000 13.05 13.05 44.83 3.18
4087 4556 2.628657 AGCAAGGAGAACTACGAGTTGT 59.371 45.455 5.20 1.85 38.80 3.32
4088 4557 3.305398 AGCAAGGAGAACTACGAGTTG 57.695 47.619 5.20 0.00 38.80 3.16
4089 4558 5.228665 GTTTAGCAAGGAGAACTACGAGTT 58.771 41.667 0.00 0.00 41.95 3.01
4090 4559 4.615452 CGTTTAGCAAGGAGAACTACGAGT 60.615 45.833 0.00 0.00 0.00 4.18
4091 4560 3.852536 CGTTTAGCAAGGAGAACTACGAG 59.147 47.826 0.00 0.00 0.00 4.18
4092 4561 3.254166 ACGTTTAGCAAGGAGAACTACGA 59.746 43.478 0.00 0.00 0.00 3.43
4093 4562 3.364023 CACGTTTAGCAAGGAGAACTACG 59.636 47.826 0.00 0.00 0.00 3.51
4094 4563 4.553323 TCACGTTTAGCAAGGAGAACTAC 58.447 43.478 0.00 0.00 0.00 2.73
4095 4564 4.859304 TCACGTTTAGCAAGGAGAACTA 57.141 40.909 0.00 0.00 0.00 2.24
4096 4565 3.746045 TCACGTTTAGCAAGGAGAACT 57.254 42.857 0.00 0.00 0.00 3.01
4097 4566 4.806342 TTTCACGTTTAGCAAGGAGAAC 57.194 40.909 0.00 0.00 30.28 3.01
4098 4567 4.879545 AGTTTTCACGTTTAGCAAGGAGAA 59.120 37.500 0.00 0.00 0.00 2.87
4099 4568 4.448210 AGTTTTCACGTTTAGCAAGGAGA 58.552 39.130 0.00 0.00 0.00 3.71
4100 4569 4.319549 GGAGTTTTCACGTTTAGCAAGGAG 60.320 45.833 0.00 0.00 0.00 3.69
4101 4570 3.562557 GGAGTTTTCACGTTTAGCAAGGA 59.437 43.478 0.00 0.00 0.00 3.36
4102 4571 3.564225 AGGAGTTTTCACGTTTAGCAAGG 59.436 43.478 0.00 0.00 0.00 3.61
4103 4572 4.813296 AGGAGTTTTCACGTTTAGCAAG 57.187 40.909 0.00 0.00 0.00 4.01
4104 4573 5.449451 GGAAAGGAGTTTTCACGTTTAGCAA 60.449 40.000 0.00 0.00 45.70 3.91
4105 4574 4.035909 GGAAAGGAGTTTTCACGTTTAGCA 59.964 41.667 0.00 0.00 45.70 3.49
4106 4575 4.534168 GGAAAGGAGTTTTCACGTTTAGC 58.466 43.478 0.00 0.00 45.70 3.09
4107 4576 4.508861 TCGGAAAGGAGTTTTCACGTTTAG 59.491 41.667 0.00 0.00 45.70 1.85
4108 4577 4.440880 TCGGAAAGGAGTTTTCACGTTTA 58.559 39.130 0.00 0.00 45.70 2.01
4109 4578 3.272581 TCGGAAAGGAGTTTTCACGTTT 58.727 40.909 0.00 0.00 45.70 3.60
4110 4579 2.908916 TCGGAAAGGAGTTTTCACGTT 58.091 42.857 0.00 0.00 45.70 3.99
4111 4580 2.607631 TCGGAAAGGAGTTTTCACGT 57.392 45.000 2.52 0.00 45.70 4.49
4112 4581 3.064207 TCATCGGAAAGGAGTTTTCACG 58.936 45.455 2.52 3.94 45.70 4.35
4113 4582 5.432885 TTTCATCGGAAAGGAGTTTTCAC 57.567 39.130 2.52 0.00 45.70 3.18
4114 4583 5.504994 CGTTTTCATCGGAAAGGAGTTTTCA 60.505 40.000 2.52 0.00 45.70 2.69
4115 4584 4.909880 CGTTTTCATCGGAAAGGAGTTTTC 59.090 41.667 0.00 0.00 43.47 2.29
4116 4585 4.577283 TCGTTTTCATCGGAAAGGAGTTTT 59.423 37.500 0.00 0.00 43.47 2.43
4117 4586 4.131596 TCGTTTTCATCGGAAAGGAGTTT 58.868 39.130 0.00 0.00 43.47 2.66
4118 4587 3.735591 TCGTTTTCATCGGAAAGGAGTT 58.264 40.909 0.00 0.00 43.47 3.01
4119 4588 3.396260 TCGTTTTCATCGGAAAGGAGT 57.604 42.857 0.00 0.00 43.47 3.85
4120 4589 5.348986 TCTATCGTTTTCATCGGAAAGGAG 58.651 41.667 0.00 0.00 43.47 3.69
4121 4590 5.126545 TCTCTATCGTTTTCATCGGAAAGGA 59.873 40.000 0.00 0.00 43.47 3.36
4122 4591 5.348986 TCTCTATCGTTTTCATCGGAAAGG 58.651 41.667 0.00 0.00 43.47 3.11
4123 4592 6.266323 TCTCTCTATCGTTTTCATCGGAAAG 58.734 40.000 0.00 0.00 43.47 2.62
4124 4593 6.095021 TCTCTCTCTATCGTTTTCATCGGAAA 59.905 38.462 0.00 0.00 41.13 3.13
4125 4594 5.589050 TCTCTCTCTATCGTTTTCATCGGAA 59.411 40.000 0.00 0.00 0.00 4.30
4126 4595 5.123936 TCTCTCTCTATCGTTTTCATCGGA 58.876 41.667 0.00 0.00 0.00 4.55
4127 4596 5.425577 TCTCTCTCTATCGTTTTCATCGG 57.574 43.478 0.00 0.00 0.00 4.18
4128 4597 6.434596 ACATCTCTCTCTATCGTTTTCATCG 58.565 40.000 0.00 0.00 0.00 3.84
4129 4598 7.421599 TGACATCTCTCTCTATCGTTTTCATC 58.578 38.462 0.00 0.00 0.00 2.92
4130 4599 7.340122 TGACATCTCTCTCTATCGTTTTCAT 57.660 36.000 0.00 0.00 0.00 2.57
4131 4600 6.759497 TGACATCTCTCTCTATCGTTTTCA 57.241 37.500 0.00 0.00 0.00 2.69
4132 4601 7.254852 AGTTGACATCTCTCTCTATCGTTTTC 58.745 38.462 0.00 0.00 0.00 2.29
4133 4602 7.164230 AGTTGACATCTCTCTCTATCGTTTT 57.836 36.000 0.00 0.00 0.00 2.43
4134 4603 6.767524 AGTTGACATCTCTCTCTATCGTTT 57.232 37.500 0.00 0.00 0.00 3.60
4135 4604 7.867305 TTAGTTGACATCTCTCTCTATCGTT 57.133 36.000 0.00 0.00 0.00 3.85
4136 4605 8.995220 GTATTAGTTGACATCTCTCTCTATCGT 58.005 37.037 0.00 0.00 0.00 3.73
4137 4606 9.214957 AGTATTAGTTGACATCTCTCTCTATCG 57.785 37.037 0.00 0.00 0.00 2.92
4148 4617 9.916397 CGGAAACATTTAGTATTAGTTGACATC 57.084 33.333 0.00 0.00 0.00 3.06
4149 4618 9.661563 TCGGAAACATTTAGTATTAGTTGACAT 57.338 29.630 0.00 0.00 0.00 3.06
4150 4619 9.661563 ATCGGAAACATTTAGTATTAGTTGACA 57.338 29.630 0.00 0.00 0.00 3.58
4151 4620 9.916397 CATCGGAAACATTTAGTATTAGTTGAC 57.084 33.333 0.00 0.00 0.00 3.18
4152 4621 9.878667 TCATCGGAAACATTTAGTATTAGTTGA 57.121 29.630 0.00 0.00 0.00 3.18
4157 4626 9.976255 CGTTTTCATCGGAAACATTTAGTATTA 57.024 29.630 0.00 0.00 42.48 0.98
4158 4627 8.723311 TCGTTTTCATCGGAAACATTTAGTATT 58.277 29.630 0.00 0.00 42.48 1.89
4159 4628 8.259049 TCGTTTTCATCGGAAACATTTAGTAT 57.741 30.769 0.00 0.00 42.48 2.12
4160 4629 7.655236 TCGTTTTCATCGGAAACATTTAGTA 57.345 32.000 0.00 0.00 42.48 1.82
4161 4630 6.548441 TCGTTTTCATCGGAAACATTTAGT 57.452 33.333 0.00 0.00 42.48 2.24
4162 4631 8.600625 TCTATCGTTTTCATCGGAAACATTTAG 58.399 33.333 0.00 0.00 42.48 1.85
4163 4632 8.481974 TCTATCGTTTTCATCGGAAACATTTA 57.518 30.769 0.00 0.00 42.48 1.40
4164 4633 7.333423 TCTCTATCGTTTTCATCGGAAACATTT 59.667 33.333 0.00 0.00 42.48 2.32
4165 4634 6.816640 TCTCTATCGTTTTCATCGGAAACATT 59.183 34.615 0.00 0.00 42.48 2.71
4166 4635 6.338146 TCTCTATCGTTTTCATCGGAAACAT 58.662 36.000 0.00 0.00 42.48 2.71
4167 4636 5.716094 TCTCTATCGTTTTCATCGGAAACA 58.284 37.500 0.00 0.00 42.48 2.83
4168 4637 6.034591 TCTCTCTATCGTTTTCATCGGAAAC 58.965 40.000 0.00 0.00 42.48 2.78
4169 4638 6.095021 TCTCTCTCTATCGTTTTCATCGGAAA 59.905 38.462 0.00 0.00 41.13 3.13
4170 4639 5.589050 TCTCTCTCTATCGTTTTCATCGGAA 59.411 40.000 0.00 0.00 0.00 4.30
4171 4640 5.123936 TCTCTCTCTATCGTTTTCATCGGA 58.876 41.667 0.00 0.00 0.00 4.55
4172 4641 5.425577 TCTCTCTCTATCGTTTTCATCGG 57.574 43.478 0.00 0.00 0.00 4.18
4173 4642 6.434596 ACATCTCTCTCTATCGTTTTCATCG 58.565 40.000 0.00 0.00 0.00 3.84
4174 4643 7.421599 TGACATCTCTCTCTATCGTTTTCATC 58.578 38.462 0.00 0.00 0.00 2.92
4175 4644 7.340122 TGACATCTCTCTCTATCGTTTTCAT 57.660 36.000 0.00 0.00 0.00 2.57
4176 4645 6.759497 TGACATCTCTCTCTATCGTTTTCA 57.241 37.500 0.00 0.00 0.00 2.69
4177 4646 7.254852 AGTTGACATCTCTCTCTATCGTTTTC 58.745 38.462 0.00 0.00 0.00 2.29
4178 4647 7.164230 AGTTGACATCTCTCTCTATCGTTTT 57.836 36.000 0.00 0.00 0.00 2.43
4179 4648 6.767524 AGTTGACATCTCTCTCTATCGTTT 57.232 37.500 0.00 0.00 0.00 3.60
4180 4649 7.867305 TTAGTTGACATCTCTCTCTATCGTT 57.133 36.000 0.00 0.00 0.00 3.85
4181 4650 7.867305 TTTAGTTGACATCTCTCTCTATCGT 57.133 36.000 0.00 0.00 0.00 3.73
4182 4651 8.349245 ACATTTAGTTGACATCTCTCTCTATCG 58.651 37.037 0.00 0.00 0.00 2.92
4183 4652 9.462174 CACATTTAGTTGACATCTCTCTCTATC 57.538 37.037 0.00 0.00 0.00 2.08
4184 4653 7.925483 GCACATTTAGTTGACATCTCTCTCTAT 59.075 37.037 0.00 0.00 0.00 1.98
4185 4654 7.123397 AGCACATTTAGTTGACATCTCTCTCTA 59.877 37.037 0.00 0.00 0.00 2.43
4186 4655 6.070881 AGCACATTTAGTTGACATCTCTCTCT 60.071 38.462 0.00 0.00 0.00 3.10
4187 4656 6.035866 CAGCACATTTAGTTGACATCTCTCTC 59.964 42.308 0.00 0.00 0.00 3.20
4188 4657 5.873712 CAGCACATTTAGTTGACATCTCTCT 59.126 40.000 0.00 0.00 0.00 3.10
4189 4658 5.447010 GCAGCACATTTAGTTGACATCTCTC 60.447 44.000 0.00 0.00 0.00 3.20
4190 4659 4.394300 GCAGCACATTTAGTTGACATCTCT 59.606 41.667 0.00 0.00 0.00 3.10
4191 4660 4.394300 AGCAGCACATTTAGTTGACATCTC 59.606 41.667 0.00 0.00 0.00 2.75
4192 4661 4.330250 AGCAGCACATTTAGTTGACATCT 58.670 39.130 0.00 0.00 0.00 2.90
4193 4662 4.691860 AGCAGCACATTTAGTTGACATC 57.308 40.909 0.00 0.00 0.00 3.06
4194 4663 5.221303 ACAAAGCAGCACATTTAGTTGACAT 60.221 36.000 0.00 0.00 0.00 3.06
4195 4664 4.097741 ACAAAGCAGCACATTTAGTTGACA 59.902 37.500 0.00 0.00 0.00 3.58
4196 4665 4.442073 CACAAAGCAGCACATTTAGTTGAC 59.558 41.667 0.00 0.00 0.00 3.18
4197 4666 4.499526 CCACAAAGCAGCACATTTAGTTGA 60.500 41.667 0.00 0.00 0.00 3.18
4198 4667 3.737266 CCACAAAGCAGCACATTTAGTTG 59.263 43.478 0.00 0.00 0.00 3.16
4199 4668 3.243839 CCCACAAAGCAGCACATTTAGTT 60.244 43.478 0.00 0.00 0.00 2.24
4200 4669 2.297033 CCCACAAAGCAGCACATTTAGT 59.703 45.455 0.00 0.00 0.00 2.24
4201 4670 2.297033 ACCCACAAAGCAGCACATTTAG 59.703 45.455 0.00 0.00 0.00 1.85
4202 4671 2.315176 ACCCACAAAGCAGCACATTTA 58.685 42.857 0.00 0.00 0.00 1.40
4203 4672 1.122227 ACCCACAAAGCAGCACATTT 58.878 45.000 0.00 0.00 0.00 2.32
4204 4673 1.122227 AACCCACAAAGCAGCACATT 58.878 45.000 0.00 0.00 0.00 2.71
4205 4674 1.122227 AAACCCACAAAGCAGCACAT 58.878 45.000 0.00 0.00 0.00 3.21
4206 4675 0.175302 CAAACCCACAAAGCAGCACA 59.825 50.000 0.00 0.00 0.00 4.57
4207 4676 0.459489 TCAAACCCACAAAGCAGCAC 59.541 50.000 0.00 0.00 0.00 4.40
4208 4677 1.412079 ATCAAACCCACAAAGCAGCA 58.588 45.000 0.00 0.00 0.00 4.41
4209 4678 2.558359 AGTATCAAACCCACAAAGCAGC 59.442 45.455 0.00 0.00 0.00 5.25
4210 4679 5.240623 TGTTAGTATCAAACCCACAAAGCAG 59.759 40.000 0.00 0.00 0.00 4.24
4211 4680 5.133941 TGTTAGTATCAAACCCACAAAGCA 58.866 37.500 0.00 0.00 0.00 3.91
4212 4681 5.699097 TGTTAGTATCAAACCCACAAAGC 57.301 39.130 0.00 0.00 0.00 3.51
4214 4683 9.968870 GTATTTTGTTAGTATCAAACCCACAAA 57.031 29.630 5.99 0.00 38.12 2.83
4215 4684 9.132923 TGTATTTTGTTAGTATCAAACCCACAA 57.867 29.630 5.99 0.00 35.05 3.33
4216 4685 8.569641 GTGTATTTTGTTAGTATCAAACCCACA 58.430 33.333 15.94 12.50 35.05 4.17
4217 4686 8.569641 TGTGTATTTTGTTAGTATCAAACCCAC 58.430 33.333 5.99 11.59 35.05 4.61
4218 4687 8.693120 TGTGTATTTTGTTAGTATCAAACCCA 57.307 30.769 5.99 2.05 35.05 4.51
4219 4688 9.620660 CTTGTGTATTTTGTTAGTATCAAACCC 57.379 33.333 5.99 0.00 35.05 4.11
4228 4697 8.524487 TGTTGGTTTCTTGTGTATTTTGTTAGT 58.476 29.630 0.00 0.00 0.00 2.24
4229 4698 8.918961 TGTTGGTTTCTTGTGTATTTTGTTAG 57.081 30.769 0.00 0.00 0.00 2.34
4230 4699 9.706691 TTTGTTGGTTTCTTGTGTATTTTGTTA 57.293 25.926 0.00 0.00 0.00 2.41
4231 4700 8.608844 TTTGTTGGTTTCTTGTGTATTTTGTT 57.391 26.923 0.00 0.00 0.00 2.83
4232 4701 8.608844 TTTTGTTGGTTTCTTGTGTATTTTGT 57.391 26.923 0.00 0.00 0.00 2.83
4233 4702 9.323963 GTTTTTGTTGGTTTCTTGTGTATTTTG 57.676 29.630 0.00 0.00 0.00 2.44
4234 4703 9.278978 AGTTTTTGTTGGTTTCTTGTGTATTTT 57.721 25.926 0.00 0.00 0.00 1.82
4235 4704 8.840833 AGTTTTTGTTGGTTTCTTGTGTATTT 57.159 26.923 0.00 0.00 0.00 1.40
4236 4705 8.716909 CAAGTTTTTGTTGGTTTCTTGTGTATT 58.283 29.630 0.00 0.00 0.00 1.89
4237 4706 8.091449 TCAAGTTTTTGTTGGTTTCTTGTGTAT 58.909 29.630 0.00 0.00 35.73 2.29
4238 4707 7.434492 TCAAGTTTTTGTTGGTTTCTTGTGTA 58.566 30.769 0.00 0.00 35.73 2.90
4239 4708 6.284459 TCAAGTTTTTGTTGGTTTCTTGTGT 58.716 32.000 0.00 0.00 35.73 3.72
4240 4709 6.777526 TCAAGTTTTTGTTGGTTTCTTGTG 57.222 33.333 0.00 0.00 35.73 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.