Multiple sequence alignment - TraesCS2B01G343100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G343100 chr2B 100.000 6681 0 0 1331 8011 489007198 489013878 0.000000e+00 12338.0
1 TraesCS2B01G343100 chr2B 100.000 1133 0 0 1 1133 489005868 489007000 0.000000e+00 2093.0
2 TraesCS2B01G343100 chr2B 88.750 400 10 8 396 763 489006004 489006400 2.640000e-124 457.0
3 TraesCS2B01G343100 chr2B 88.750 400 10 8 137 533 489006263 489006630 2.640000e-124 457.0
4 TraesCS2B01G343100 chr2B 93.233 266 6 4 267 523 489006004 489006266 1.630000e-101 381.0
5 TraesCS2B01G343100 chr2B 93.233 266 6 4 137 399 489006134 489006390 1.630000e-101 381.0
6 TraesCS2B01G343100 chr2B 91.775 231 8 4 531 753 489006039 489006266 2.170000e-80 311.0
7 TraesCS2B01G343100 chr2B 91.775 231 8 4 172 399 489006398 489006620 2.170000e-80 311.0
8 TraesCS2B01G343100 chr2B 88.235 136 6 3 626 753 489006004 489006137 3.870000e-33 154.0
9 TraesCS2B01G343100 chr2B 88.235 136 6 3 137 270 489006493 489006620 3.870000e-33 154.0
10 TraesCS2B01G343100 chr2B 100.000 31 0 0 3477 3507 1163251 1163281 3.120000e-04 58.4
11 TraesCS2B01G343100 chr2D 96.581 4592 114 19 1331 5898 417159456 417164028 0.000000e+00 7570.0
12 TraesCS2B01G343100 chr2D 95.004 1241 31 2 5898 7120 417164093 417165320 0.000000e+00 1919.0
13 TraesCS2B01G343100 chr2D 86.207 928 60 25 7124 8011 417165365 417166264 0.000000e+00 942.0
14 TraesCS2B01G343100 chr2D 84.030 263 31 8 1 262 417158433 417158685 8.030000e-60 243.0
15 TraesCS2B01G343100 chr2D 90.909 44 4 0 3464 3507 6586702 6586745 8.680000e-05 60.2
16 TraesCS2B01G343100 chr2A 96.053 4586 124 23 1331 5898 572807484 572802938 0.000000e+00 7413.0
17 TraesCS2B01G343100 chr2A 90.040 1265 61 21 5901 7110 572802870 572801616 0.000000e+00 1578.0
18 TraesCS2B01G343100 chr2A 83.200 625 42 20 7124 7698 572801562 572800951 1.540000e-141 514.0
19 TraesCS2B01G343100 chr2A 90.323 341 27 5 775 1112 572808266 572807929 7.380000e-120 442.0
20 TraesCS2B01G343100 chr2A 100.000 97 0 0 744 840 202892319 202892223 6.390000e-41 180.0
21 TraesCS2B01G343100 chr2A 89.583 96 10 0 7810 7905 572800907 572800812 1.090000e-23 122.0
22 TraesCS2B01G343100 chr7B 93.805 113 4 3 729 841 533308122 533308231 4.970000e-37 167.0
23 TraesCS2B01G343100 chr3B 96.117 103 2 1 746 848 44401593 44401493 4.970000e-37 167.0
24 TraesCS2B01G343100 chr3B 95.327 107 2 2 742 848 44789076 44789179 4.970000e-37 167.0
25 TraesCS2B01G343100 chr3B 96.970 99 2 1 742 839 44755848 44755750 1.790000e-36 165.0
26 TraesCS2B01G343100 chr3B 94.495 109 2 3 743 848 44758218 44758111 1.790000e-36 165.0
27 TraesCS2B01G343100 chr3B 93.636 110 2 2 742 848 717990898 717990791 8.320000e-35 159.0
28 TraesCS2B01G343100 chr1D 96.078 102 2 1 742 841 379787318 379787419 1.790000e-36 165.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G343100 chr2B 489005868 489013878 8010 False 1703.7 12338 92.3986 1 8011 10 chr2B.!!$F2 8010
1 TraesCS2B01G343100 chr2D 417158433 417166264 7831 False 2668.5 7570 90.4555 1 8011 4 chr2D.!!$F2 8010
2 TraesCS2B01G343100 chr2A 572800812 572808266 7454 True 2013.8 7413 89.8398 775 7905 5 chr2A.!!$R2 7130

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
451 484 1.608590 CACTGTTTTGACCGAATGCCT 59.391 47.619 0.00 0.0 0.00 4.75 F
1112 1147 0.468029 CACTGGAGCACCCAAGGTTT 60.468 55.000 0.00 0.0 46.07 3.27 F
1752 2019 0.245266 CAACAAGCATGGCAGCATCA 59.755 50.000 10.71 0.0 36.85 3.07 F
3140 3411 0.541392 CTGCACAGGGGCATACACTA 59.459 55.000 0.00 0.0 43.97 2.74 F
4580 4864 0.030101 GCCAACGCTTAAAGTGCACA 59.970 50.000 21.04 0.0 0.00 4.57 F
5883 6176 0.036105 TGGTGCATGCTACAGGTCAG 60.036 55.000 20.33 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1513 1776 0.460109 TCACAACCGATCATGGCTCG 60.460 55.000 10.49 10.49 35.92 5.03 R
2633 2900 0.185901 ATTGGCCAACTGACCAGTGT 59.814 50.000 23.27 0.00 41.58 3.55 R
3597 3868 1.731424 CGGCTCGACGAAACACTATGT 60.731 52.381 0.00 0.00 35.47 2.29 R
4950 5234 0.554305 AGGTTTTTGGGGGACGTCTT 59.446 50.000 16.46 0.00 0.00 3.01 R
5964 6322 1.278699 TCCTACATCACTGTGCATGCA 59.721 47.619 18.46 18.46 36.79 3.96 R
7804 8344 0.097674 ACGAGAGATTGCGCATTTGC 59.902 50.000 12.75 4.03 37.78 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 92 9.703892 CCATGGTTAAAAAGAAATCATGTGTTA 57.296 29.630 2.57 0.00 31.49 2.41
103 104 6.849085 AATCATGTGTTATTGGGTTGCTTA 57.151 33.333 0.00 0.00 0.00 3.09
142 144 5.411669 ACCGAAAGTTGGATTGATAACACTC 59.588 40.000 0.00 0.00 0.00 3.51
147 149 7.496346 AAGTTGGATTGATAACACTCCTAGA 57.504 36.000 10.18 0.00 43.42 2.43
149 151 7.504403 AGTTGGATTGATAACACTCCTAGATG 58.496 38.462 10.18 0.00 43.42 2.90
150 152 7.126421 AGTTGGATTGATAACACTCCTAGATGT 59.874 37.037 10.18 0.00 43.42 3.06
151 153 7.437713 TGGATTGATAACACTCCTAGATGTT 57.562 36.000 10.18 10.56 43.42 2.71
157 159 7.851228 TGATAACACTCCTAGATGTTTGATGT 58.149 34.615 10.88 0.00 39.67 3.06
162 164 4.019860 ACTCCTAGATGTTTGATGTGCAGT 60.020 41.667 0.00 0.00 0.00 4.40
163 165 4.507710 TCCTAGATGTTTGATGTGCAGTC 58.492 43.478 0.00 0.00 0.00 3.51
164 166 4.223700 TCCTAGATGTTTGATGTGCAGTCT 59.776 41.667 0.00 0.00 0.00 3.24
184 186 6.221858 GTCTTCTGACTCACTGTTTTGATC 57.778 41.667 0.00 0.00 39.94 2.92
185 187 4.984785 TCTTCTGACTCACTGTTTTGATCG 59.015 41.667 0.00 0.00 0.00 3.69
186 188 4.584327 TCTGACTCACTGTTTTGATCGA 57.416 40.909 0.00 0.00 0.00 3.59
187 189 4.944048 TCTGACTCACTGTTTTGATCGAA 58.056 39.130 0.00 0.00 0.00 3.71
188 190 5.541845 TCTGACTCACTGTTTTGATCGAAT 58.458 37.500 0.00 0.00 0.00 3.34
189 191 5.406477 TCTGACTCACTGTTTTGATCGAATG 59.594 40.000 0.00 0.00 0.00 2.67
190 192 4.083855 TGACTCACTGTTTTGATCGAATGC 60.084 41.667 0.00 0.00 0.00 3.56
191 193 3.189287 ACTCACTGTTTTGATCGAATGCC 59.811 43.478 0.00 0.00 0.00 4.40
192 194 3.411446 TCACTGTTTTGATCGAATGCCT 58.589 40.909 0.00 0.00 0.00 4.75
193 195 3.820467 TCACTGTTTTGATCGAATGCCTT 59.180 39.130 0.00 0.00 0.00 4.35
194 196 4.278170 TCACTGTTTTGATCGAATGCCTTT 59.722 37.500 0.00 0.00 0.00 3.11
195 197 4.984161 CACTGTTTTGATCGAATGCCTTTT 59.016 37.500 0.00 0.00 0.00 2.27
196 198 6.016693 TCACTGTTTTGATCGAATGCCTTTTA 60.017 34.615 0.00 0.00 0.00 1.52
197 199 6.088085 CACTGTTTTGATCGAATGCCTTTTAC 59.912 38.462 0.00 0.00 0.00 2.01
198 200 6.016276 ACTGTTTTGATCGAATGCCTTTTACT 60.016 34.615 0.00 0.00 0.00 2.24
199 201 7.174253 ACTGTTTTGATCGAATGCCTTTTACTA 59.826 33.333 0.00 0.00 0.00 1.82
200 202 7.877003 TGTTTTGATCGAATGCCTTTTACTAA 58.123 30.769 0.00 0.00 0.00 2.24
201 203 8.353684 TGTTTTGATCGAATGCCTTTTACTAAA 58.646 29.630 0.00 0.00 0.00 1.85
202 204 9.353999 GTTTTGATCGAATGCCTTTTACTAAAT 57.646 29.630 0.00 0.00 0.00 1.40
207 209 9.170584 GATCGAATGCCTTTTACTAAATAAAGC 57.829 33.333 0.00 0.00 34.22 3.51
208 210 8.276252 TCGAATGCCTTTTACTAAATAAAGCT 57.724 30.769 0.00 0.00 34.22 3.74
209 211 8.395633 TCGAATGCCTTTTACTAAATAAAGCTC 58.604 33.333 0.00 0.00 34.22 4.09
210 212 8.398665 CGAATGCCTTTTACTAAATAAAGCTCT 58.601 33.333 0.00 0.00 34.22 4.09
211 213 9.723447 GAATGCCTTTTACTAAATAAAGCTCTC 57.277 33.333 0.00 0.00 34.22 3.20
212 214 8.807948 ATGCCTTTTACTAAATAAAGCTCTCA 57.192 30.769 0.00 0.00 34.22 3.27
213 215 8.630054 TGCCTTTTACTAAATAAAGCTCTCAA 57.370 30.769 0.00 0.00 34.22 3.02
214 216 9.073475 TGCCTTTTACTAAATAAAGCTCTCAAA 57.927 29.630 0.00 0.00 34.22 2.69
215 217 9.908152 GCCTTTTACTAAATAAAGCTCTCAAAA 57.092 29.630 0.00 0.00 34.22 2.44
222 224 9.018582 ACTAAATAAAGCTCTCAAAATTCAGCT 57.981 29.630 0.00 0.00 44.28 4.24
223 225 9.286946 CTAAATAAAGCTCTCAAAATTCAGCTG 57.713 33.333 7.63 7.63 41.48 4.24
224 226 7.458409 AATAAAGCTCTCAAAATTCAGCTGA 57.542 32.000 13.74 13.74 41.48 4.26
225 227 5.779529 AAAGCTCTCAAAATTCAGCTGAA 57.220 34.783 30.23 30.23 41.48 3.02
226 228 5.779529 AAGCTCTCAAAATTCAGCTGAAA 57.220 34.783 31.55 14.81 41.48 2.69
227 229 5.779529 AGCTCTCAAAATTCAGCTGAAAA 57.220 34.783 31.55 12.18 40.79 2.29
228 230 6.152932 AGCTCTCAAAATTCAGCTGAAAAA 57.847 33.333 31.55 11.37 40.79 1.94
286 288 9.971922 AAAAGAAAAACTCCTAGATGTTTGATG 57.028 29.630 11.80 0.00 36.63 3.07
287 289 8.697507 AAGAAAAACTCCTAGATGTTTGATGT 57.302 30.769 11.80 3.63 36.63 3.06
288 290 8.103948 AGAAAAACTCCTAGATGTTTGATGTG 57.896 34.615 11.80 0.00 36.63 3.21
289 291 5.886960 AAACTCCTAGATGTTTGATGTGC 57.113 39.130 10.73 0.00 35.40 4.57
290 292 4.558226 ACTCCTAGATGTTTGATGTGCA 57.442 40.909 0.00 0.00 0.00 4.57
291 293 4.511527 ACTCCTAGATGTTTGATGTGCAG 58.488 43.478 0.00 0.00 0.00 4.41
292 294 4.019860 ACTCCTAGATGTTTGATGTGCAGT 60.020 41.667 0.00 0.00 0.00 4.40
293 295 4.507710 TCCTAGATGTTTGATGTGCAGTC 58.492 43.478 0.00 0.00 0.00 3.51
294 296 4.223700 TCCTAGATGTTTGATGTGCAGTCT 59.776 41.667 0.00 0.00 0.00 3.24
295 297 4.940046 CCTAGATGTTTGATGTGCAGTCTT 59.060 41.667 0.00 0.00 0.00 3.01
296 298 5.064452 CCTAGATGTTTGATGTGCAGTCTTC 59.936 44.000 0.00 0.00 0.00 2.87
297 299 4.649692 AGATGTTTGATGTGCAGTCTTCT 58.350 39.130 0.00 0.00 0.00 2.85
298 300 4.454847 AGATGTTTGATGTGCAGTCTTCTG 59.545 41.667 0.00 0.00 43.87 3.02
299 301 3.807553 TGTTTGATGTGCAGTCTTCTGA 58.192 40.909 0.00 0.00 43.76 3.27
300 302 3.561310 TGTTTGATGTGCAGTCTTCTGAC 59.439 43.478 0.00 0.00 43.76 3.51
325 327 6.347696 TCACTGTTTTGATCAAATGCCTTTT 58.652 32.000 21.10 0.79 0.00 2.27
326 328 7.495901 TCACTGTTTTGATCAAATGCCTTTTA 58.504 30.769 21.10 1.34 0.00 1.52
327 329 7.437862 TCACTGTTTTGATCAAATGCCTTTTAC 59.562 33.333 21.10 13.67 0.00 2.01
328 330 7.439056 CACTGTTTTGATCAAATGCCTTTTACT 59.561 33.333 21.10 0.00 0.00 2.24
339 341 9.243105 TCAAATGCCTTTTACTAATAAAGCTCT 57.757 29.630 0.00 0.00 31.90 4.09
351 353 8.572855 ACTAATAAAGCTCTCAAAATTCAGCT 57.427 30.769 0.00 0.00 44.28 4.24
353 355 7.458409 AATAAAGCTCTCAAAATTCAGCTGA 57.542 32.000 13.74 13.74 41.48 4.26
354 356 5.779529 AAAGCTCTCAAAATTCAGCTGAA 57.220 34.783 30.23 30.23 41.48 3.02
355 357 5.779529 AAGCTCTCAAAATTCAGCTGAAA 57.220 34.783 31.55 14.81 41.48 2.69
416 449 6.064717 AGAAAAACTCCTAGCTGTTTGATGT 58.935 36.000 0.00 2.40 36.63 3.06
424 457 2.579873 AGCTGTTTGATGTGCAGTCTT 58.420 42.857 0.00 0.00 33.18 3.01
425 458 2.551459 AGCTGTTTGATGTGCAGTCTTC 59.449 45.455 0.00 0.00 33.18 2.87
426 459 2.551459 GCTGTTTGATGTGCAGTCTTCT 59.449 45.455 0.00 0.00 33.18 2.85
427 460 3.608707 GCTGTTTGATGTGCAGTCTTCTG 60.609 47.826 0.00 0.00 43.87 3.02
428 461 3.807553 TGTTTGATGTGCAGTCTTCTGA 58.192 40.909 0.00 0.00 43.76 3.27
429 462 3.561310 TGTTTGATGTGCAGTCTTCTGAC 59.439 43.478 0.00 0.00 43.76 3.51
442 475 5.396750 GTCTTCTGACTCACTGTTTTGAC 57.603 43.478 0.00 0.00 39.94 3.18
444 477 2.821546 TCTGACTCACTGTTTTGACCG 58.178 47.619 0.00 0.00 0.00 4.79
447 480 3.804036 TGACTCACTGTTTTGACCGAAT 58.196 40.909 0.00 0.00 0.00 3.34
448 481 3.559655 TGACTCACTGTTTTGACCGAATG 59.440 43.478 0.00 0.00 0.00 2.67
449 482 2.290641 ACTCACTGTTTTGACCGAATGC 59.709 45.455 0.00 0.00 0.00 3.56
451 484 1.608590 CACTGTTTTGACCGAATGCCT 59.391 47.619 0.00 0.00 0.00 4.75
456 489 4.612943 TGTTTTGACCGAATGCCTTTTAC 58.387 39.130 0.00 0.00 0.00 2.01
458 491 5.531659 TGTTTTGACCGAATGCCTTTTACTA 59.468 36.000 0.00 0.00 0.00 1.82
462 495 7.925043 TTGACCGAATGCCTTTTACTAAATA 57.075 32.000 0.00 0.00 0.00 1.40
469 502 8.398665 CGAATGCCTTTTACTAAATAAAGCTCT 58.601 33.333 0.00 0.00 34.22 4.09
470 503 9.723447 GAATGCCTTTTACTAAATAAAGCTCTC 57.277 33.333 0.00 0.00 34.22 3.20
489 522 9.481340 AAGCTCTCAAAATAAAAAGAAACATCC 57.519 29.630 0.00 0.00 0.00 3.51
490 523 8.864087 AGCTCTCAAAATAAAAAGAAACATCCT 58.136 29.630 0.00 0.00 0.00 3.24
491 524 9.481340 GCTCTCAAAATAAAAAGAAACATCCTT 57.519 29.630 0.00 0.00 0.00 3.36
541 574 9.487790 AAGAAAAAGAAAATGTCACTGTTTTGA 57.512 25.926 0.00 0.00 0.00 2.69
542 575 9.657419 AGAAAAAGAAAATGTCACTGTTTTGAT 57.343 25.926 0.00 0.00 0.00 2.57
545 578 9.434420 AAAAGAAAATGTCACTGTTTTGATTGA 57.566 25.926 0.00 0.00 0.00 2.57
546 579 9.434420 AAAGAAAATGTCACTGTTTTGATTGAA 57.566 25.926 0.00 0.00 0.00 2.69
547 580 9.603921 AAGAAAATGTCACTGTTTTGATTGAAT 57.396 25.926 0.00 0.00 0.00 2.57
548 581 9.037737 AGAAAATGTCACTGTTTTGATTGAATG 57.962 29.630 0.00 0.00 0.00 2.67
549 582 6.774354 AATGTCACTGTTTTGATTGAATGC 57.226 33.333 0.00 0.00 0.00 3.56
550 583 4.619973 TGTCACTGTTTTGATTGAATGCC 58.380 39.130 0.00 0.00 0.00 4.40
551 584 4.341806 TGTCACTGTTTTGATTGAATGCCT 59.658 37.500 0.00 0.00 0.00 4.75
552 585 5.163426 TGTCACTGTTTTGATTGAATGCCTT 60.163 36.000 0.00 0.00 0.00 4.35
553 586 5.754890 GTCACTGTTTTGATTGAATGCCTTT 59.245 36.000 0.00 0.00 0.00 3.11
554 587 6.258507 GTCACTGTTTTGATTGAATGCCTTTT 59.741 34.615 0.00 0.00 0.00 2.27
555 588 7.437862 GTCACTGTTTTGATTGAATGCCTTTTA 59.562 33.333 0.00 0.00 0.00 1.52
556 589 7.437862 TCACTGTTTTGATTGAATGCCTTTTAC 59.562 33.333 0.00 0.00 0.00 2.01
557 590 7.439056 CACTGTTTTGATTGAATGCCTTTTACT 59.561 33.333 0.00 0.00 0.00 2.24
558 591 8.637986 ACTGTTTTGATTGAATGCCTTTTACTA 58.362 29.630 0.00 0.00 0.00 1.82
559 592 9.474920 CTGTTTTGATTGAATGCCTTTTACTAA 57.525 29.630 0.00 0.00 0.00 2.24
560 593 9.823647 TGTTTTGATTGAATGCCTTTTACTAAA 57.176 25.926 0.00 0.00 0.00 1.85
643 676 7.404671 AAAAGAAAAACTCCTAGCTGTTTGA 57.595 32.000 0.00 0.00 36.63 2.69
644 677 7.588497 AAAGAAAAACTCCTAGCTGTTTGAT 57.412 32.000 0.00 5.22 36.63 2.57
645 678 6.566197 AGAAAAACTCCTAGCTGTTTGATG 57.434 37.500 0.00 0.00 36.63 3.07
646 679 6.064717 AGAAAAACTCCTAGCTGTTTGATGT 58.935 36.000 0.00 2.40 36.63 3.06
647 680 5.695851 AAAACTCCTAGCTGTTTGATGTG 57.304 39.130 0.00 0.00 36.63 3.21
648 681 2.704572 ACTCCTAGCTGTTTGATGTGC 58.295 47.619 0.00 0.00 0.00 4.57
649 682 2.038952 ACTCCTAGCTGTTTGATGTGCA 59.961 45.455 0.00 0.00 0.00 4.57
650 683 2.676839 CTCCTAGCTGTTTGATGTGCAG 59.323 50.000 0.00 0.00 0.00 4.41
651 684 2.038952 TCCTAGCTGTTTGATGTGCAGT 59.961 45.455 0.00 0.00 33.18 4.40
652 685 2.417933 CCTAGCTGTTTGATGTGCAGTC 59.582 50.000 0.00 0.00 33.18 3.51
653 686 2.267174 AGCTGTTTGATGTGCAGTCT 57.733 45.000 0.00 0.00 33.18 3.24
654 687 2.579873 AGCTGTTTGATGTGCAGTCTT 58.420 42.857 0.00 0.00 33.18 3.01
655 688 2.551459 AGCTGTTTGATGTGCAGTCTTC 59.449 45.455 0.00 0.00 33.18 2.87
656 689 2.551459 GCTGTTTGATGTGCAGTCTTCT 59.449 45.455 0.00 0.00 33.18 2.85
657 690 3.608707 GCTGTTTGATGTGCAGTCTTCTG 60.609 47.826 0.00 0.00 43.87 3.02
658 691 3.807553 TGTTTGATGTGCAGTCTTCTGA 58.192 40.909 0.00 0.00 43.76 3.27
659 692 3.561310 TGTTTGATGTGCAGTCTTCTGAC 59.439 43.478 0.00 0.00 43.76 3.51
672 705 5.396750 GTCTTCTGACTCACTGTTTTGAC 57.603 43.478 0.00 0.00 39.94 3.18
673 706 4.271291 GTCTTCTGACTCACTGTTTTGACC 59.729 45.833 0.00 0.00 39.94 4.02
674 707 2.821546 TCTGACTCACTGTTTTGACCG 58.178 47.619 0.00 0.00 0.00 4.79
675 708 2.429250 TCTGACTCACTGTTTTGACCGA 59.571 45.455 0.00 0.00 0.00 4.69
676 709 3.118920 TCTGACTCACTGTTTTGACCGAA 60.119 43.478 0.00 0.00 0.00 4.30
677 710 3.804036 TGACTCACTGTTTTGACCGAAT 58.196 40.909 0.00 0.00 0.00 3.34
678 711 3.559655 TGACTCACTGTTTTGACCGAATG 59.440 43.478 0.00 0.00 0.00 2.67
679 712 3.804036 ACTCACTGTTTTGACCGAATGA 58.196 40.909 0.00 0.00 0.00 2.57
680 713 3.560068 ACTCACTGTTTTGACCGAATGAC 59.440 43.478 0.00 0.00 0.00 3.06
681 714 3.804036 TCACTGTTTTGACCGAATGACT 58.196 40.909 0.00 0.00 0.00 3.41
682 715 4.196193 TCACTGTTTTGACCGAATGACTT 58.804 39.130 0.00 0.00 0.00 3.01
683 716 4.638421 TCACTGTTTTGACCGAATGACTTT 59.362 37.500 0.00 0.00 0.00 2.66
684 717 5.124776 TCACTGTTTTGACCGAATGACTTTT 59.875 36.000 0.00 0.00 0.00 2.27
685 718 6.316640 TCACTGTTTTGACCGAATGACTTTTA 59.683 34.615 0.00 0.00 0.00 1.52
686 719 6.413818 CACTGTTTTGACCGAATGACTTTTAC 59.586 38.462 0.00 0.00 0.00 2.01
687 720 6.317893 ACTGTTTTGACCGAATGACTTTTACT 59.682 34.615 0.00 0.00 0.00 2.24
688 721 7.496591 ACTGTTTTGACCGAATGACTTTTACTA 59.503 33.333 0.00 0.00 0.00 1.82
689 722 8.211116 TGTTTTGACCGAATGACTTTTACTAA 57.789 30.769 0.00 0.00 0.00 2.24
690 723 8.675504 TGTTTTGACCGAATGACTTTTACTAAA 58.324 29.630 0.00 0.00 0.00 1.85
691 724 9.673454 GTTTTGACCGAATGACTTTTACTAAAT 57.327 29.630 0.00 0.00 0.00 1.40
696 729 9.486857 GACCGAATGACTTTTACTAAATAAAGC 57.513 33.333 0.00 0.00 35.31 3.51
697 730 9.227777 ACCGAATGACTTTTACTAAATAAAGCT 57.772 29.630 0.00 0.00 35.31 3.74
698 731 9.704098 CCGAATGACTTTTACTAAATAAAGCTC 57.296 33.333 0.00 0.00 35.31 4.09
719 752 9.481340 AAGCTCTCAAAATAAAAAGAAACATCC 57.519 29.630 0.00 0.00 0.00 3.51
720 753 8.864087 AGCTCTCAAAATAAAAAGAAACATCCT 58.136 29.630 0.00 0.00 0.00 3.24
721 754 9.481340 GCTCTCAAAATAAAAAGAAACATCCTT 57.519 29.630 0.00 0.00 0.00 3.36
841 874 2.354704 CCAACTCGGCCATCTTGACTTA 60.355 50.000 2.24 0.00 0.00 2.24
842 875 3.535561 CAACTCGGCCATCTTGACTTAT 58.464 45.455 2.24 0.00 0.00 1.73
846 879 3.941483 CTCGGCCATCTTGACTTATTTGT 59.059 43.478 2.24 0.00 0.00 2.83
847 880 4.331968 TCGGCCATCTTGACTTATTTGTT 58.668 39.130 2.24 0.00 0.00 2.83
851 884 7.122055 TCGGCCATCTTGACTTATTTGTTAAAT 59.878 33.333 2.24 0.00 34.90 1.40
919 953 4.593956 AGCTTTCTTCAGATTCCCGATTT 58.406 39.130 0.00 0.00 0.00 2.17
920 954 4.397417 AGCTTTCTTCAGATTCCCGATTTG 59.603 41.667 0.00 0.00 0.00 2.32
922 956 2.643551 TCTTCAGATTCCCGATTTGGC 58.356 47.619 0.00 0.00 35.87 4.52
1063 1098 2.829003 CCTGCCGCCGTCTCTCTA 60.829 66.667 0.00 0.00 0.00 2.43
1112 1147 0.468029 CACTGGAGCACCCAAGGTTT 60.468 55.000 0.00 0.00 46.07 3.27
1113 1148 0.468029 ACTGGAGCACCCAAGGTTTG 60.468 55.000 0.00 0.00 46.07 2.93
1114 1149 1.809567 CTGGAGCACCCAAGGTTTGC 61.810 60.000 0.00 2.53 46.07 3.68
1115 1150 2.574018 GGAGCACCCAAGGTTTGCC 61.574 63.158 6.38 0.29 31.02 4.52
1116 1151 2.524148 AGCACCCAAGGTTTGCCC 60.524 61.111 6.38 0.00 31.02 5.36
1117 1152 3.625897 GCACCCAAGGTTTGCCCC 61.626 66.667 0.00 0.00 31.02 5.80
1118 1153 2.123077 CACCCAAGGTTTGCCCCA 60.123 61.111 0.00 0.00 31.02 4.96
1119 1154 2.123033 ACCCAAGGTTTGCCCCAC 60.123 61.111 0.00 0.00 34.57 4.61
1120 1155 2.922503 CCCAAGGTTTGCCCCACC 60.923 66.667 0.00 0.00 34.57 4.61
1121 1156 2.922503 CCAAGGTTTGCCCCACCC 60.923 66.667 0.00 0.00 34.44 4.61
1122 1157 2.201210 CAAGGTTTGCCCCACCCT 59.799 61.111 0.00 0.00 34.44 4.34
1123 1158 2.201210 AAGGTTTGCCCCACCCTG 59.799 61.111 0.00 0.00 34.44 4.45
1124 1159 2.710826 AAGGTTTGCCCCACCCTGT 61.711 57.895 0.00 0.00 34.44 4.00
1125 1160 2.600470 GGTTTGCCCCACCCTGTC 60.600 66.667 0.00 0.00 0.00 3.51
1126 1161 2.600470 GTTTGCCCCACCCTGTCC 60.600 66.667 0.00 0.00 0.00 4.02
1127 1162 3.106609 TTTGCCCCACCCTGTCCA 61.107 61.111 0.00 0.00 0.00 4.02
1128 1163 2.705487 TTTGCCCCACCCTGTCCAA 61.705 57.895 0.00 0.00 0.00 3.53
1129 1164 2.655077 TTTGCCCCACCCTGTCCAAG 62.655 60.000 0.00 0.00 0.00 3.61
1131 1166 4.366684 CCCCACCCTGTCCAAGCC 62.367 72.222 0.00 0.00 0.00 4.35
1132 1167 4.722700 CCCACCCTGTCCAAGCCG 62.723 72.222 0.00 0.00 0.00 5.52
1381 1642 5.336531 GCTGCTAGTTGTAGTTCTTGGTCTA 60.337 44.000 0.00 0.00 0.00 2.59
1456 1719 5.360714 TCAATTTCTCCTTGTGGGATAATGC 59.639 40.000 0.00 0.00 44.15 3.56
1475 1738 1.205657 CTGCGTTGTGTTGTACGAGT 58.794 50.000 0.00 0.00 40.03 4.18
1487 1750 2.839975 TGTACGAGTTTGGACAATGCA 58.160 42.857 0.00 0.00 0.00 3.96
1497 1760 1.752498 TGGACAATGCATGGAATCTGC 59.248 47.619 8.45 0.00 40.10 4.26
1505 1768 3.151554 TGCATGGAATCTGCATCATACC 58.848 45.455 0.00 0.00 44.30 2.73
1513 1776 5.698545 GGAATCTGCATCATACCTGTCTTAC 59.301 44.000 0.00 0.00 0.00 2.34
1611 1878 1.134818 TGGGACACGCTAATAGTGCTG 60.135 52.381 0.02 1.96 42.94 4.41
1752 2019 0.245266 CAACAAGCATGGCAGCATCA 59.755 50.000 10.71 0.00 36.85 3.07
2037 2304 2.325583 TATCCCGTTCCATCTTGCAC 57.674 50.000 0.00 0.00 0.00 4.57
2050 2317 6.003326 TCCATCTTGCACTTTTATCTGTTCA 58.997 36.000 0.00 0.00 0.00 3.18
2111 2378 8.934023 ACAAACACTTTTTATAATCCTGGAGA 57.066 30.769 1.52 0.00 0.00 3.71
2136 2403 5.983540 AGTGAATGTAAGGAGAGGTTGATC 58.016 41.667 0.00 0.00 0.00 2.92
2142 2409 6.433847 TGTAAGGAGAGGTTGATCTTTTCA 57.566 37.500 0.00 0.00 0.00 2.69
2362 2629 1.737793 CCTTGCTGATCCGGTAAACAC 59.262 52.381 0.00 0.00 0.00 3.32
2369 2636 1.276989 GATCCGGTAAACACCACCTCA 59.723 52.381 0.00 0.00 33.62 3.86
2439 2706 5.305585 TCCAGTGTCATGGTAAAGTTTCTC 58.694 41.667 0.00 0.00 41.43 2.87
2512 2779 1.370900 GCTTGTTCTTGCACTGCCG 60.371 57.895 0.00 0.00 0.00 5.69
2745 3015 5.051106 GCTATTTCTTCGAGCAGAGACATTC 60.051 44.000 0.00 0.00 36.20 2.67
2746 3016 4.527509 TTTCTTCGAGCAGAGACATTCT 57.472 40.909 0.00 0.00 36.25 2.40
2899 3169 8.169268 CGAAGGTATCAATCAAAGTTTACAGTC 58.831 37.037 0.00 0.00 0.00 3.51
2925 3196 6.543100 TGGTGGGGATTTATTATTCGTTACAC 59.457 38.462 0.00 0.00 0.00 2.90
3063 3334 3.438360 CACACTTCACTTTGCCTTGAAC 58.562 45.455 0.00 0.00 0.00 3.18
3140 3411 0.541392 CTGCACAGGGGCATACACTA 59.459 55.000 0.00 0.00 43.97 2.74
3152 3423 5.301045 GGGGCATACACTAAACCTTTTATCC 59.699 44.000 0.00 0.00 0.00 2.59
3239 3510 9.101325 ACTAACCTTGCCTCATATAGCTTTATA 57.899 33.333 0.00 0.00 0.00 0.98
3287 3558 3.976169 AGTATGTGTTTGCGCATGTTTT 58.024 36.364 12.75 0.00 44.61 2.43
3288 3559 3.980775 AGTATGTGTTTGCGCATGTTTTC 59.019 39.130 12.75 0.65 44.61 2.29
3368 3639 3.146847 CAGGGACAAACTGTTAGGGTTC 58.853 50.000 0.00 0.00 0.00 3.62
3370 3641 2.148768 GGACAAACTGTTAGGGTTCGG 58.851 52.381 0.00 0.00 0.00 4.30
3377 3648 1.077930 GTTAGGGTTCGGGGGCTTC 60.078 63.158 0.00 0.00 0.00 3.86
3748 4029 2.158534 TGTTTGATGGTGGGCTGTTACT 60.159 45.455 0.00 0.00 0.00 2.24
3842 4123 3.070734 GTCACCCATCAGAGTGCATCTAT 59.929 47.826 0.00 0.00 36.10 1.98
3895 4176 0.814410 CTCGCTCATCTTGGCTGCAT 60.814 55.000 0.50 0.00 0.00 3.96
3974 4255 3.366052 AGTTTTTGGGTGAGTGTGTCT 57.634 42.857 0.00 0.00 0.00 3.41
4027 4308 1.068741 GTGACCAAGACGACTTCCACT 59.931 52.381 13.10 0.00 33.70 4.00
4063 4344 4.758251 CTCGCCATGGCCGACACA 62.758 66.667 30.79 8.98 37.98 3.72
4180 4464 2.043411 TGTTTCGTACGTAACTCGCAC 58.957 47.619 29.57 11.11 44.19 5.34
4216 4500 8.152898 AGAGTGTGATTAATATTGCTAGCATGA 58.847 33.333 20.13 10.01 0.00 3.07
4413 4697 1.498865 CTGTTCCGAGCGCAGTTTGT 61.499 55.000 11.47 0.00 0.00 2.83
4416 4700 0.249531 TTCCGAGCGCAGTTTGTACA 60.250 50.000 11.47 0.00 0.00 2.90
4438 4722 3.909732 ACCACATTCTTTCCCTTGAACA 58.090 40.909 0.00 0.00 0.00 3.18
4447 4731 5.065914 TCTTTCCCTTGAACATGTGAGAAG 58.934 41.667 0.00 1.93 0.00 2.85
4580 4864 0.030101 GCCAACGCTTAAAGTGCACA 59.970 50.000 21.04 0.00 0.00 4.57
4646 4930 9.994432 TGAATCAAAAATTGCGTAAACAAATTT 57.006 22.222 0.00 0.00 34.84 1.82
4648 4932 9.780413 AATCAAAAATTGCGTAAACAAATTTGT 57.220 22.222 18.13 18.13 44.72 2.83
4910 5194 0.534203 GGAAGTCGTGGAAGTTGCCA 60.534 55.000 0.00 0.00 35.02 4.92
5006 5291 0.546122 TGATGGTTCGCTAAGGGCAT 59.454 50.000 0.00 0.00 41.91 4.40
5024 5309 2.398588 CATGGTTCTGGAGCCCTACTA 58.601 52.381 1.22 0.00 0.00 1.82
5124 5409 2.554462 AGATACGATCTGATGGGTGACG 59.446 50.000 4.67 0.00 38.44 4.35
5140 5425 2.290641 GTGACGACAAAGGTTGCTGAAT 59.709 45.455 0.00 0.00 31.02 2.57
5174 5459 3.144506 AGTCGGTCGAGTAAGACTTTGA 58.855 45.455 0.00 0.00 40.64 2.69
5246 5531 8.188799 TGGAAATGTTTGTTATTAACACGTTCA 58.811 29.630 8.75 6.67 41.97 3.18
5322 5607 7.709269 AATATAAAACGCACACTCGACATAT 57.291 32.000 0.00 0.00 0.00 1.78
5337 5622 3.539604 GACATATGTCTGAGCTTGGCTT 58.460 45.455 25.52 0.00 39.51 4.35
5371 5661 2.281484 ATGTGCGAGGCAAACGGT 60.281 55.556 0.00 0.00 41.47 4.83
5379 5669 3.056328 GGCAAACGGTGGAGGAGC 61.056 66.667 0.00 0.00 0.00 4.70
5390 5683 1.327690 TGGAGGAGCGGCGTTTATCT 61.328 55.000 9.37 1.61 0.00 1.98
5534 5827 8.770010 TTAAGATTTCCTGGGAGTTGTTTTTA 57.230 30.769 0.00 0.00 0.00 1.52
5632 5925 8.772705 TGGACTTATTGTAACGAATTTTAACGT 58.227 29.630 0.00 0.00 44.57 3.99
5755 6048 3.186909 GTGCTGGTTTGTTTCCTGTTTC 58.813 45.455 0.00 0.00 0.00 2.78
5883 6176 0.036105 TGGTGCATGCTACAGGTCAG 60.036 55.000 20.33 0.00 0.00 3.51
5899 6192 2.576615 GTCAGAAGGCCTTTTGACTGT 58.423 47.619 41.34 14.72 45.60 3.55
5930 6288 8.511321 TGACTACATGTTGGTATTGAATTCAAC 58.489 33.333 22.71 12.03 38.86 3.18
5969 6327 5.657470 ACGCTATAAATACAGTGTGCATG 57.343 39.130 5.88 0.00 34.34 4.06
6017 6375 3.552132 TGTACCAGCTGTTGAAACTCA 57.448 42.857 13.81 0.00 0.00 3.41
6426 6784 7.808856 GGCAACATTTATTTGATGCAAAAATGT 59.191 29.630 16.84 14.92 44.51 2.71
6427 6785 8.631695 GCAACATTTATTTGATGCAAAAATGTG 58.368 29.630 17.01 14.58 40.63 3.21
6428 6786 9.666626 CAACATTTATTTGATGCAAAAATGTGT 57.333 25.926 17.01 15.01 40.63 3.72
6429 6787 9.881529 AACATTTATTTGATGCAAAAATGTGTC 57.118 25.926 17.01 0.00 40.63 3.67
6430 6788 8.222433 ACATTTATTTGATGCAAAAATGTGTCG 58.778 29.630 16.84 7.48 40.31 4.35
6431 6789 6.702972 TTATTTGATGCAAAAATGTGTCGG 57.297 33.333 16.84 0.00 36.90 4.79
6432 6790 2.063156 TGATGCAAAAATGTGTCGGC 57.937 45.000 0.00 0.00 0.00 5.54
6433 6791 1.339291 TGATGCAAAAATGTGTCGGCA 59.661 42.857 0.00 0.00 35.54 5.69
6434 6792 2.223900 TGATGCAAAAATGTGTCGGCAA 60.224 40.909 0.00 0.00 34.64 4.52
6435 6793 2.299993 TGCAAAAATGTGTCGGCAAA 57.700 40.000 0.00 0.00 0.00 3.68
6436 6794 2.831333 TGCAAAAATGTGTCGGCAAAT 58.169 38.095 0.00 0.00 0.00 2.32
6437 6795 3.982475 TGCAAAAATGTGTCGGCAAATA 58.018 36.364 0.00 0.00 0.00 1.40
6438 6796 4.564041 TGCAAAAATGTGTCGGCAAATAT 58.436 34.783 0.00 0.00 0.00 1.28
6447 6805 1.837747 GTCGGCAAATATTGAAACGCG 59.162 47.619 3.53 3.53 0.00 6.01
6679 7088 7.395772 TGGCAAGTTCCTATGATTCAATTTGTA 59.604 33.333 0.00 0.00 0.00 2.41
6703 7112 2.158449 GGAGCTTCCAATCGCATAATCG 59.842 50.000 0.00 0.00 36.28 3.34
6721 7130 3.127081 TCGTAACTTAGCAGTGCTACG 57.873 47.619 24.40 24.52 41.12 3.51
6727 7136 0.815734 TTAGCAGTGCTACGTCCCTC 59.184 55.000 24.40 0.00 41.12 4.30
6795 7213 5.474532 TGCCCTGAATATGATAAGCAATGAC 59.525 40.000 0.00 0.00 0.00 3.06
6804 7222 2.010145 TAAGCAATGACCGTGAGCTC 57.990 50.000 6.82 6.82 33.83 4.09
6837 7255 0.392461 TAATCCAAGCGCCGCTTCTT 60.392 50.000 23.32 17.12 46.77 2.52
6879 7297 0.457851 CCGCTCTCAGATTCTTCGGT 59.542 55.000 0.00 0.00 0.00 4.69
6912 7330 3.494398 GGAAATAGACGCTAGGATGCCAA 60.494 47.826 0.00 0.00 0.00 4.52
6941 7359 7.046251 CGTGACGAGAATTTTGTTATTTCATCG 60.046 37.037 0.00 0.00 0.00 3.84
6968 7386 2.268920 CAGTACTGGTGGCGGCAT 59.731 61.111 17.19 0.38 0.00 4.40
6980 7398 1.067706 TGGCGGCATTCAAATTGTCTG 60.068 47.619 7.97 0.00 0.00 3.51
7089 7524 5.148651 AGAAACGGAGTATTAGTTGCTGT 57.851 39.130 0.00 0.00 45.00 4.40
7103 7538 2.605837 TGCTGTCCTCACGTGTTTAA 57.394 45.000 16.51 0.00 0.00 1.52
7120 7555 9.498176 ACGTGTTTAACTCTTATTAATTGGACT 57.502 29.630 0.00 0.00 0.00 3.85
7154 7632 6.732531 TGTCATGAAACAGAGCATTTCTAG 57.267 37.500 0.00 0.00 37.05 2.43
7199 7687 1.478916 GAGGTCTCTTCCAGGTACAGC 59.521 57.143 0.00 0.00 0.00 4.40
7201 7689 0.458716 GTCTCTTCCAGGTACAGCGC 60.459 60.000 0.00 0.00 0.00 5.92
7240 7728 4.665212 GTTTTCCGTTTCTTTTCCTCGTT 58.335 39.130 0.00 0.00 0.00 3.85
7267 7755 0.239347 GCTGTGGCATGGCGATTATC 59.761 55.000 15.27 1.66 38.54 1.75
7329 7817 5.252547 TCTGAAGGCTATATTTGCACAACA 58.747 37.500 0.00 0.00 0.00 3.33
7420 7938 4.575885 CTTGACGGGATCAAAGAGGTTAA 58.424 43.478 0.00 0.00 46.80 2.01
7485 8017 5.117745 CGTGTACATCTCTGTGAAAAGACTG 59.882 44.000 0.00 0.00 36.79 3.51
7486 8018 5.986135 GTGTACATCTCTGTGAAAAGACTGT 59.014 40.000 0.00 0.00 36.79 3.55
7487 8019 6.144724 GTGTACATCTCTGTGAAAAGACTGTC 59.855 42.308 0.00 0.00 36.79 3.51
7488 8020 4.636249 ACATCTCTGTGAAAAGACTGTCC 58.364 43.478 3.76 0.00 33.22 4.02
7489 8021 4.346418 ACATCTCTGTGAAAAGACTGTCCT 59.654 41.667 3.76 0.00 33.22 3.85
7490 8022 5.163258 ACATCTCTGTGAAAAGACTGTCCTT 60.163 40.000 3.76 0.00 33.22 3.36
7530 8062 0.912486 AGTTCCTTTCCGCTAGGCAT 59.088 50.000 0.00 0.00 37.47 4.40
7531 8063 1.017387 GTTCCTTTCCGCTAGGCATG 58.983 55.000 0.00 0.00 37.47 4.06
7541 8081 4.253685 TCCGCTAGGCATGCTATATTTTC 58.746 43.478 18.92 0.00 37.47 2.29
7624 8164 2.552315 TGCCTTCTGTAAAGCCTTTTCG 59.448 45.455 0.00 0.00 0.00 3.46
7631 8171 2.292292 TGTAAAGCCTTTTCGTTCTGGC 59.708 45.455 0.00 0.00 45.21 4.85
7717 8257 4.765339 AGTATAACCAAGGACCTGTTTTGC 59.235 41.667 0.00 0.00 0.00 3.68
7718 8258 2.159179 AACCAAGGACCTGTTTTGCT 57.841 45.000 0.00 0.00 0.00 3.91
7719 8259 1.402787 ACCAAGGACCTGTTTTGCTG 58.597 50.000 0.00 0.00 0.00 4.41
7720 8260 0.675633 CCAAGGACCTGTTTTGCTGG 59.324 55.000 0.00 0.00 41.41 4.85
7721 8261 1.691196 CAAGGACCTGTTTTGCTGGA 58.309 50.000 0.00 0.00 39.25 3.86
7722 8262 2.242043 CAAGGACCTGTTTTGCTGGAT 58.758 47.619 0.00 0.00 39.25 3.41
7723 8263 3.420893 CAAGGACCTGTTTTGCTGGATA 58.579 45.455 0.00 0.00 39.25 2.59
7724 8264 3.073274 AGGACCTGTTTTGCTGGATAC 57.927 47.619 0.00 0.00 39.25 2.24
7725 8265 2.644798 AGGACCTGTTTTGCTGGATACT 59.355 45.455 0.00 0.00 39.25 2.12
7726 8266 3.844211 AGGACCTGTTTTGCTGGATACTA 59.156 43.478 0.00 0.00 39.25 1.82
7727 8267 4.288626 AGGACCTGTTTTGCTGGATACTAA 59.711 41.667 0.00 0.00 39.25 2.24
7728 8268 4.395231 GGACCTGTTTTGCTGGATACTAAC 59.605 45.833 0.00 0.00 39.25 2.34
7729 8269 5.242795 ACCTGTTTTGCTGGATACTAACT 57.757 39.130 0.00 0.00 39.25 2.24
7730 8270 6.368779 ACCTGTTTTGCTGGATACTAACTA 57.631 37.500 0.00 0.00 39.25 2.24
7732 8272 5.585047 CCTGTTTTGCTGGATACTAACTACC 59.415 44.000 0.00 0.00 38.33 3.18
7733 8273 5.493809 TGTTTTGCTGGATACTAACTACCC 58.506 41.667 0.00 0.00 37.61 3.69
7735 8275 2.686119 TGCTGGATACTAACTACCCCC 58.314 52.381 0.00 0.00 37.61 5.40
7736 8276 2.249214 TGCTGGATACTAACTACCCCCT 59.751 50.000 0.00 0.00 37.61 4.79
7737 8277 2.898612 GCTGGATACTAACTACCCCCTC 59.101 54.545 0.00 0.00 37.61 4.30
7738 8278 3.508426 CTGGATACTAACTACCCCCTCC 58.492 54.545 0.00 0.00 37.61 4.30
7739 8279 2.158415 TGGATACTAACTACCCCCTCCG 60.158 54.545 0.00 0.00 37.61 4.63
7740 8280 2.158400 GGATACTAACTACCCCCTCCGT 60.158 54.545 0.00 0.00 0.00 4.69
7741 8281 2.736670 TACTAACTACCCCCTCCGTC 57.263 55.000 0.00 0.00 0.00 4.79
7742 8282 1.006020 ACTAACTACCCCCTCCGTCT 58.994 55.000 0.00 0.00 0.00 4.18
7743 8283 2.208872 ACTAACTACCCCCTCCGTCTA 58.791 52.381 0.00 0.00 0.00 2.59
7746 8286 3.979501 AACTACCCCCTCCGTCTAATA 57.020 47.619 0.00 0.00 0.00 0.98
7747 8287 4.482400 AACTACCCCCTCCGTCTAATAT 57.518 45.455 0.00 0.00 0.00 1.28
7748 8288 3.775910 ACTACCCCCTCCGTCTAATATG 58.224 50.000 0.00 0.00 0.00 1.78
7749 8289 2.025636 ACCCCCTCCGTCTAATATGG 57.974 55.000 0.00 0.00 35.30 2.74
7768 8308 1.249407 GGACGGAGGGAGTAGCATAG 58.751 60.000 0.00 0.00 0.00 2.23
7780 8320 4.384056 GAGTAGCATAGATGGTGCACAAT 58.616 43.478 20.43 13.97 44.87 2.71
7783 8323 4.428294 AGCATAGATGGTGCACAATAGT 57.572 40.909 20.43 6.48 44.87 2.12
7793 8333 5.312895 TGGTGCACAATAGTACAAGTCATT 58.687 37.500 20.43 0.00 0.00 2.57
7795 8335 5.163754 GGTGCACAATAGTACAAGTCATTCC 60.164 44.000 20.43 0.00 0.00 3.01
7800 8340 6.823182 CACAATAGTACAAGTCATTCCCATGA 59.177 38.462 0.00 0.00 37.05 3.07
7801 8341 7.500227 CACAATAGTACAAGTCATTCCCATGAT 59.500 37.037 0.00 0.00 41.64 2.45
7802 8342 7.500227 ACAATAGTACAAGTCATTCCCATGATG 59.500 37.037 0.00 0.00 41.64 3.07
7803 8343 4.202441 AGTACAAGTCATTCCCATGATGC 58.798 43.478 0.00 0.00 41.64 3.91
7804 8344 2.019249 ACAAGTCATTCCCATGATGCG 58.981 47.619 0.00 0.00 41.64 4.73
7805 8345 1.027357 AAGTCATTCCCATGATGCGC 58.973 50.000 0.00 0.00 41.64 6.09
7806 8346 0.107066 AGTCATTCCCATGATGCGCA 60.107 50.000 14.96 14.96 41.64 6.09
7807 8347 0.740149 GTCATTCCCATGATGCGCAA 59.260 50.000 17.11 0.00 41.64 4.85
7822 8362 2.850831 GCAAATGCGCAATCTCTCG 58.149 52.632 17.11 0.00 0.00 4.04
7842 8382 8.592155 TCTCTCGTTCACATTTATGAATAAACG 58.408 33.333 13.73 13.73 40.60 3.60
7850 8390 8.560374 TCACATTTATGAATAAACGTCACACAA 58.440 29.630 0.00 0.00 35.31 3.33
7948 8495 5.357878 CGTACCCACACCTCTACTACAAATA 59.642 44.000 0.00 0.00 0.00 1.40
7949 8496 6.040166 CGTACCCACACCTCTACTACAAATAT 59.960 42.308 0.00 0.00 0.00 1.28
7960 8507 7.201848 CCTCTACTACAAATATTACCGTGGTGA 60.202 40.741 0.72 0.00 0.00 4.02
7969 8516 3.667087 CCGTGGTGAATGGTGGTG 58.333 61.111 0.00 0.00 0.00 4.17
7970 8517 1.971167 CCGTGGTGAATGGTGGTGG 60.971 63.158 0.00 0.00 0.00 4.61
7995 8542 3.242936 CGTATTATTTTTGGTCGGGCCTG 60.243 47.826 4.71 4.71 38.35 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 0.889306 GGGTGACTTCACTACTCGCT 59.111 55.000 9.20 0.00 45.73 4.93
74 75 7.173047 GCAACCCAATAACACATGATTTCTTTT 59.827 33.333 0.00 0.00 0.00 2.27
75 76 6.650390 GCAACCCAATAACACATGATTTCTTT 59.350 34.615 0.00 0.00 0.00 2.52
91 92 5.937975 ACAAGCATTATAAGCAACCCAAT 57.062 34.783 8.84 0.00 0.00 3.16
93 94 4.526262 ACAACAAGCATTATAAGCAACCCA 59.474 37.500 8.84 0.00 0.00 4.51
96 97 5.572896 GGTCACAACAAGCATTATAAGCAAC 59.427 40.000 8.84 0.00 0.00 4.17
103 104 4.518970 ACTTTCGGTCACAACAAGCATTAT 59.481 37.500 0.00 0.00 0.00 1.28
142 144 4.511527 AGACTGCACATCAAACATCTAGG 58.488 43.478 0.00 0.00 0.00 3.02
147 149 4.214971 GTCAGAAGACTGCACATCAAACAT 59.785 41.667 0.00 0.00 43.17 2.71
149 151 4.139183 GTCAGAAGACTGCACATCAAAC 57.861 45.455 0.00 0.00 43.17 2.93
162 164 4.984785 CGATCAAAACAGTGAGTCAGAAGA 59.015 41.667 0.00 0.00 0.00 2.87
163 165 4.984785 TCGATCAAAACAGTGAGTCAGAAG 59.015 41.667 0.00 0.00 0.00 2.85
164 166 4.944048 TCGATCAAAACAGTGAGTCAGAA 58.056 39.130 0.00 0.00 0.00 3.02
174 176 6.381801 AGTAAAAGGCATTCGATCAAAACAG 58.618 36.000 0.00 0.00 0.00 3.16
181 183 9.170584 GCTTTATTTAGTAAAAGGCATTCGATC 57.829 33.333 0.00 0.00 34.07 3.69
182 184 8.903820 AGCTTTATTTAGTAAAAGGCATTCGAT 58.096 29.630 0.00 0.00 34.07 3.59
183 185 8.276252 AGCTTTATTTAGTAAAAGGCATTCGA 57.724 30.769 0.00 0.00 34.07 3.71
184 186 8.398665 AGAGCTTTATTTAGTAAAAGGCATTCG 58.601 33.333 0.00 0.00 34.07 3.34
185 187 9.723447 GAGAGCTTTATTTAGTAAAAGGCATTC 57.277 33.333 0.00 0.00 34.07 2.67
186 188 9.243105 TGAGAGCTTTATTTAGTAAAAGGCATT 57.757 29.630 0.00 0.00 34.07 3.56
187 189 8.807948 TGAGAGCTTTATTTAGTAAAAGGCAT 57.192 30.769 0.00 0.00 34.07 4.40
188 190 8.630054 TTGAGAGCTTTATTTAGTAAAAGGCA 57.370 30.769 0.00 0.00 34.07 4.75
189 191 9.908152 TTTTGAGAGCTTTATTTAGTAAAAGGC 57.092 29.630 0.00 0.00 34.07 4.35
196 198 9.018582 AGCTGAATTTTGAGAGCTTTATTTAGT 57.981 29.630 0.00 0.00 38.68 2.24
197 199 9.286946 CAGCTGAATTTTGAGAGCTTTATTTAG 57.713 33.333 8.42 0.00 39.82 1.85
198 200 9.013229 TCAGCTGAATTTTGAGAGCTTTATTTA 57.987 29.630 15.67 0.00 39.82 1.40
199 201 7.889469 TCAGCTGAATTTTGAGAGCTTTATTT 58.111 30.769 15.67 0.00 39.82 1.40
200 202 7.458409 TCAGCTGAATTTTGAGAGCTTTATT 57.542 32.000 15.67 0.00 39.82 1.40
201 203 7.458409 TTCAGCTGAATTTTGAGAGCTTTAT 57.542 32.000 25.16 0.00 39.82 1.40
202 204 6.882610 TTCAGCTGAATTTTGAGAGCTTTA 57.117 33.333 25.16 0.00 39.82 1.85
203 205 5.779529 TTCAGCTGAATTTTGAGAGCTTT 57.220 34.783 25.16 0.00 39.82 3.51
204 206 5.779529 TTTCAGCTGAATTTTGAGAGCTT 57.220 34.783 28.89 0.00 39.82 3.74
205 207 5.779529 TTTTCAGCTGAATTTTGAGAGCT 57.220 34.783 28.89 0.00 42.59 4.09
260 262 9.971922 CATCAAACATCTAGGAGTTTTTCTTTT 57.028 29.630 9.73 0.00 35.90 2.27
261 263 9.136323 ACATCAAACATCTAGGAGTTTTTCTTT 57.864 29.630 9.73 0.00 35.90 2.52
262 264 8.571336 CACATCAAACATCTAGGAGTTTTTCTT 58.429 33.333 9.73 0.00 35.90 2.52
263 265 7.308830 GCACATCAAACATCTAGGAGTTTTTCT 60.309 37.037 9.73 0.00 35.90 2.52
264 266 6.803807 GCACATCAAACATCTAGGAGTTTTTC 59.196 38.462 9.73 0.00 35.90 2.29
265 267 6.265196 TGCACATCAAACATCTAGGAGTTTTT 59.735 34.615 9.73 1.18 35.90 1.94
266 268 5.769662 TGCACATCAAACATCTAGGAGTTTT 59.230 36.000 9.73 0.00 35.90 2.43
267 269 5.316167 TGCACATCAAACATCTAGGAGTTT 58.684 37.500 7.40 7.40 38.40 2.66
268 270 4.910195 TGCACATCAAACATCTAGGAGTT 58.090 39.130 0.00 0.00 0.00 3.01
269 271 4.019860 ACTGCACATCAAACATCTAGGAGT 60.020 41.667 0.00 0.00 0.00 3.85
270 272 4.511527 ACTGCACATCAAACATCTAGGAG 58.488 43.478 0.00 0.00 0.00 3.69
271 273 4.223700 AGACTGCACATCAAACATCTAGGA 59.776 41.667 0.00 0.00 0.00 2.94
272 274 4.511527 AGACTGCACATCAAACATCTAGG 58.488 43.478 0.00 0.00 0.00 3.02
273 275 5.873712 AGAAGACTGCACATCAAACATCTAG 59.126 40.000 0.00 0.00 0.00 2.43
274 276 5.640783 CAGAAGACTGCACATCAAACATCTA 59.359 40.000 0.00 0.00 37.33 1.98
275 277 4.454847 CAGAAGACTGCACATCAAACATCT 59.545 41.667 0.00 0.00 37.33 2.90
276 278 4.453478 TCAGAAGACTGCACATCAAACATC 59.547 41.667 0.00 0.00 43.17 3.06
277 279 4.214971 GTCAGAAGACTGCACATCAAACAT 59.785 41.667 0.00 0.00 43.17 2.71
278 280 3.561310 GTCAGAAGACTGCACATCAAACA 59.439 43.478 0.00 0.00 43.17 2.83
279 281 4.139183 GTCAGAAGACTGCACATCAAAC 57.861 45.455 0.00 0.00 43.17 2.93
291 293 5.755375 TGATCAAAACAGTGAGTCAGAAGAC 59.245 40.000 0.00 0.00 45.31 3.01
292 294 5.917462 TGATCAAAACAGTGAGTCAGAAGA 58.083 37.500 0.00 0.00 0.00 2.87
293 295 6.609237 TTGATCAAAACAGTGAGTCAGAAG 57.391 37.500 5.45 0.00 0.00 2.85
294 296 7.420002 CATTTGATCAAAACAGTGAGTCAGAA 58.580 34.615 23.91 0.00 33.56 3.02
295 297 6.513884 GCATTTGATCAAAACAGTGAGTCAGA 60.514 38.462 23.91 0.00 33.56 3.27
296 298 5.628193 GCATTTGATCAAAACAGTGAGTCAG 59.372 40.000 23.91 4.87 33.56 3.51
297 299 5.507817 GGCATTTGATCAAAACAGTGAGTCA 60.508 40.000 23.91 0.00 33.56 3.41
298 300 4.919754 GGCATTTGATCAAAACAGTGAGTC 59.080 41.667 23.91 6.97 33.56 3.36
299 301 4.586001 AGGCATTTGATCAAAACAGTGAGT 59.414 37.500 23.91 2.98 33.56 3.41
300 302 5.130292 AGGCATTTGATCAAAACAGTGAG 57.870 39.130 23.91 9.60 33.56 3.51
301 303 5.534207 AAGGCATTTGATCAAAACAGTGA 57.466 34.783 23.91 0.30 33.56 3.41
302 304 6.607735 AAAAGGCATTTGATCAAAACAGTG 57.392 33.333 23.91 17.82 33.56 3.66
303 305 7.500141 AGTAAAAGGCATTTGATCAAAACAGT 58.500 30.769 23.91 5.59 33.56 3.55
304 306 7.951530 AGTAAAAGGCATTTGATCAAAACAG 57.048 32.000 23.91 17.01 33.56 3.16
305 307 9.995003 ATTAGTAAAAGGCATTTGATCAAAACA 57.005 25.926 23.91 2.66 33.56 2.83
310 312 9.801873 GCTTTATTAGTAAAAGGCATTTGATCA 57.198 29.630 0.00 0.00 35.04 2.92
313 315 9.243105 AGAGCTTTATTAGTAAAAGGCATTTGA 57.757 29.630 0.00 0.00 35.04 2.69
325 327 9.672673 AGCTGAATTTTGAGAGCTTTATTAGTA 57.327 29.630 0.00 0.00 38.68 1.82
326 328 8.457261 CAGCTGAATTTTGAGAGCTTTATTAGT 58.543 33.333 8.42 0.00 39.82 2.24
327 329 8.671921 TCAGCTGAATTTTGAGAGCTTTATTAG 58.328 33.333 15.67 0.00 39.82 1.73
328 330 8.565896 TCAGCTGAATTTTGAGAGCTTTATTA 57.434 30.769 15.67 0.00 39.82 0.98
332 334 5.779529 TTCAGCTGAATTTTGAGAGCTTT 57.220 34.783 25.16 0.00 39.82 3.51
391 393 6.547510 ACATCAAACAGCTAGGAGTTTTTCTT 59.452 34.615 0.00 0.00 35.90 2.52
393 395 6.145535 CACATCAAACAGCTAGGAGTTTTTC 58.854 40.000 0.00 0.00 35.90 2.29
397 430 3.077359 GCACATCAAACAGCTAGGAGTT 58.923 45.455 0.00 0.00 0.00 3.01
401 434 2.417933 GACTGCACATCAAACAGCTAGG 59.582 50.000 0.00 0.00 34.72 3.02
408 441 4.139183 GTCAGAAGACTGCACATCAAAC 57.861 45.455 0.00 0.00 43.17 2.93
424 457 2.429250 TCGGTCAAAACAGTGAGTCAGA 59.571 45.455 0.00 0.00 0.00 3.27
425 458 2.821546 TCGGTCAAAACAGTGAGTCAG 58.178 47.619 0.00 0.00 0.00 3.51
426 459 2.971660 TCGGTCAAAACAGTGAGTCA 57.028 45.000 0.00 0.00 0.00 3.41
427 460 3.607078 GCATTCGGTCAAAACAGTGAGTC 60.607 47.826 0.00 0.00 0.00 3.36
428 461 2.290641 GCATTCGGTCAAAACAGTGAGT 59.709 45.455 0.00 0.00 0.00 3.41
429 462 2.350772 GGCATTCGGTCAAAACAGTGAG 60.351 50.000 0.00 0.00 0.00 3.51
430 463 1.606668 GGCATTCGGTCAAAACAGTGA 59.393 47.619 0.00 0.00 0.00 3.41
431 464 1.608590 AGGCATTCGGTCAAAACAGTG 59.391 47.619 0.00 0.00 0.00 3.66
432 465 1.981256 AGGCATTCGGTCAAAACAGT 58.019 45.000 0.00 0.00 0.00 3.55
433 466 3.369546 AAAGGCATTCGGTCAAAACAG 57.630 42.857 0.00 0.00 0.00 3.16
434 467 3.810310 AAAAGGCATTCGGTCAAAACA 57.190 38.095 0.00 0.00 0.00 2.83
435 468 4.866921 AGTAAAAGGCATTCGGTCAAAAC 58.133 39.130 0.00 0.00 0.00 2.43
437 470 6.636562 TTTAGTAAAAGGCATTCGGTCAAA 57.363 33.333 0.00 0.00 0.00 2.69
440 473 7.431376 GCTTTATTTAGTAAAAGGCATTCGGTC 59.569 37.037 0.00 0.00 34.07 4.79
442 475 7.480810 AGCTTTATTTAGTAAAAGGCATTCGG 58.519 34.615 0.00 0.00 34.07 4.30
444 477 9.723447 GAGAGCTTTATTTAGTAAAAGGCATTC 57.277 33.333 0.00 0.00 34.07 2.67
447 480 8.630054 TTGAGAGCTTTATTTAGTAAAAGGCA 57.370 30.769 0.00 0.00 34.07 4.75
448 481 9.908152 TTTTGAGAGCTTTATTTAGTAAAAGGC 57.092 29.630 0.00 0.00 34.07 4.35
515 548 9.487790 TCAAAACAGTGACATTTTCTTTTTCTT 57.512 25.926 0.00 0.00 0.00 2.52
516 549 9.657419 ATCAAAACAGTGACATTTTCTTTTTCT 57.343 25.926 0.00 0.00 0.00 2.52
519 552 9.434420 TCAATCAAAACAGTGACATTTTCTTTT 57.566 25.926 0.00 0.00 0.00 2.27
520 553 9.434420 TTCAATCAAAACAGTGACATTTTCTTT 57.566 25.926 0.00 0.00 0.00 2.52
521 554 9.603921 ATTCAATCAAAACAGTGACATTTTCTT 57.396 25.926 0.00 0.00 0.00 2.52
522 555 9.037737 CATTCAATCAAAACAGTGACATTTTCT 57.962 29.630 0.00 0.00 0.00 2.52
523 556 7.795272 GCATTCAATCAAAACAGTGACATTTTC 59.205 33.333 0.00 0.00 0.00 2.29
524 557 7.254863 GGCATTCAATCAAAACAGTGACATTTT 60.255 33.333 0.00 0.00 0.00 1.82
525 558 6.203338 GGCATTCAATCAAAACAGTGACATTT 59.797 34.615 0.00 0.00 0.00 2.32
526 559 5.697633 GGCATTCAATCAAAACAGTGACATT 59.302 36.000 0.00 0.00 0.00 2.71
527 560 5.011329 AGGCATTCAATCAAAACAGTGACAT 59.989 36.000 0.00 0.00 0.00 3.06
528 561 4.341806 AGGCATTCAATCAAAACAGTGACA 59.658 37.500 0.00 0.00 0.00 3.58
529 562 4.874970 AGGCATTCAATCAAAACAGTGAC 58.125 39.130 0.00 0.00 0.00 3.67
530 563 5.534207 AAGGCATTCAATCAAAACAGTGA 57.466 34.783 0.00 0.00 0.00 3.41
531 564 6.607735 AAAAGGCATTCAATCAAAACAGTG 57.392 33.333 0.00 0.00 0.00 3.66
532 565 7.500141 AGTAAAAGGCATTCAATCAAAACAGT 58.500 30.769 0.00 0.00 0.00 3.55
533 566 7.951530 AGTAAAAGGCATTCAATCAAAACAG 57.048 32.000 0.00 0.00 0.00 3.16
534 567 9.823647 TTTAGTAAAAGGCATTCAATCAAAACA 57.176 25.926 0.00 0.00 0.00 2.83
561 594 9.868277 TTTTTCAGCTGAATTTTGAGAACTTTA 57.132 25.926 28.89 6.79 33.54 1.85
562 595 8.776376 TTTTTCAGCTGAATTTTGAGAACTTT 57.224 26.923 28.89 0.00 33.54 2.66
618 651 7.836842 TCAAACAGCTAGGAGTTTTTCTTTTT 58.163 30.769 0.00 0.00 35.90 1.94
619 652 7.404671 TCAAACAGCTAGGAGTTTTTCTTTT 57.595 32.000 0.00 0.00 35.90 2.27
620 653 7.068716 ACATCAAACAGCTAGGAGTTTTTCTTT 59.931 33.333 0.00 0.00 35.90 2.52
621 654 6.547510 ACATCAAACAGCTAGGAGTTTTTCTT 59.452 34.615 0.00 0.00 35.90 2.52
622 655 6.016777 CACATCAAACAGCTAGGAGTTTTTCT 60.017 38.462 0.00 0.00 35.90 2.52
623 656 6.145535 CACATCAAACAGCTAGGAGTTTTTC 58.854 40.000 0.00 0.00 35.90 2.29
624 657 5.507985 GCACATCAAACAGCTAGGAGTTTTT 60.508 40.000 0.00 0.00 35.90 1.94
625 658 4.022849 GCACATCAAACAGCTAGGAGTTTT 60.023 41.667 0.00 0.00 35.90 2.43
626 659 3.503748 GCACATCAAACAGCTAGGAGTTT 59.496 43.478 0.00 0.00 38.40 2.66
627 660 3.077359 GCACATCAAACAGCTAGGAGTT 58.923 45.455 0.00 0.00 0.00 3.01
628 661 2.038952 TGCACATCAAACAGCTAGGAGT 59.961 45.455 0.00 0.00 0.00 3.85
629 662 2.676839 CTGCACATCAAACAGCTAGGAG 59.323 50.000 0.00 0.00 0.00 3.69
630 663 2.038952 ACTGCACATCAAACAGCTAGGA 59.961 45.455 0.00 0.00 34.72 2.94
631 664 2.417933 GACTGCACATCAAACAGCTAGG 59.582 50.000 0.00 0.00 34.72 3.02
632 665 3.332919 AGACTGCACATCAAACAGCTAG 58.667 45.455 0.00 0.00 34.72 3.42
633 666 3.407424 AGACTGCACATCAAACAGCTA 57.593 42.857 0.00 0.00 34.72 3.32
634 667 2.267174 AGACTGCACATCAAACAGCT 57.733 45.000 0.00 0.00 34.72 4.24
635 668 2.551459 AGAAGACTGCACATCAAACAGC 59.449 45.455 0.00 0.00 34.72 4.40
636 669 3.811497 TCAGAAGACTGCACATCAAACAG 59.189 43.478 0.00 0.00 43.17 3.16
637 670 3.561310 GTCAGAAGACTGCACATCAAACA 59.439 43.478 0.00 0.00 43.17 2.83
638 671 4.139183 GTCAGAAGACTGCACATCAAAC 57.861 45.455 0.00 0.00 43.17 2.93
650 683 4.271291 GGTCAAAACAGTGAGTCAGAAGAC 59.729 45.833 0.00 0.00 45.31 3.01
651 684 4.442706 GGTCAAAACAGTGAGTCAGAAGA 58.557 43.478 0.00 0.00 0.00 2.87
652 685 3.246226 CGGTCAAAACAGTGAGTCAGAAG 59.754 47.826 0.00 0.00 0.00 2.85
653 686 3.118920 TCGGTCAAAACAGTGAGTCAGAA 60.119 43.478 0.00 0.00 0.00 3.02
654 687 2.429250 TCGGTCAAAACAGTGAGTCAGA 59.571 45.455 0.00 0.00 0.00 3.27
655 688 2.821546 TCGGTCAAAACAGTGAGTCAG 58.178 47.619 0.00 0.00 0.00 3.51
656 689 2.971660 TCGGTCAAAACAGTGAGTCA 57.028 45.000 0.00 0.00 0.00 3.41
657 690 3.807622 TCATTCGGTCAAAACAGTGAGTC 59.192 43.478 0.00 0.00 0.00 3.36
658 691 3.560068 GTCATTCGGTCAAAACAGTGAGT 59.440 43.478 0.00 0.00 0.00 3.41
659 692 3.809832 AGTCATTCGGTCAAAACAGTGAG 59.190 43.478 0.00 0.00 0.00 3.51
660 693 3.804036 AGTCATTCGGTCAAAACAGTGA 58.196 40.909 0.00 0.00 0.00 3.41
661 694 4.552166 AAGTCATTCGGTCAAAACAGTG 57.448 40.909 0.00 0.00 0.00 3.66
662 695 5.576447 AAAAGTCATTCGGTCAAAACAGT 57.424 34.783 0.00 0.00 0.00 3.55
663 696 6.725246 AGTAAAAGTCATTCGGTCAAAACAG 58.275 36.000 0.00 0.00 0.00 3.16
664 697 6.687081 AGTAAAAGTCATTCGGTCAAAACA 57.313 33.333 0.00 0.00 0.00 2.83
665 698 9.673454 ATTTAGTAAAAGTCATTCGGTCAAAAC 57.327 29.630 0.00 0.00 0.00 2.43
670 703 9.486857 GCTTTATTTAGTAAAAGTCATTCGGTC 57.513 33.333 0.00 0.00 35.56 4.79
671 704 9.227777 AGCTTTATTTAGTAAAAGTCATTCGGT 57.772 29.630 0.00 0.00 35.56 4.69
672 705 9.704098 GAGCTTTATTTAGTAAAAGTCATTCGG 57.296 33.333 0.00 0.00 35.56 4.30
693 726 9.481340 GGATGTTTCTTTTTATTTTGAGAGCTT 57.519 29.630 0.00 0.00 0.00 3.74
694 727 8.864087 AGGATGTTTCTTTTTATTTTGAGAGCT 58.136 29.630 0.00 0.00 0.00 4.09
695 728 9.481340 AAGGATGTTTCTTTTTATTTTGAGAGC 57.519 29.630 0.00 0.00 0.00 4.09
743 776 9.154847 CCACTCTTGACATTTTCTTTTTCTTTT 57.845 29.630 0.00 0.00 0.00 2.27
754 787 6.462909 GGTTCAAATCCCACTCTTGACATTTT 60.463 38.462 0.00 0.00 0.00 1.82
756 789 4.524328 GGTTCAAATCCCACTCTTGACATT 59.476 41.667 0.00 0.00 0.00 2.71
898 932 4.439289 CCAAATCGGGAATCTGAAGAAAGC 60.439 45.833 0.00 0.00 0.00 3.51
900 934 3.443681 GCCAAATCGGGAATCTGAAGAAA 59.556 43.478 0.00 0.00 34.06 2.52
931 965 9.151471 CTTTACGAATTAGGAATCTTTCTGTCA 57.849 33.333 0.00 0.00 0.00 3.58
934 968 8.604890 GGTCTTTACGAATTAGGAATCTTTCTG 58.395 37.037 0.00 0.00 0.00 3.02
936 970 8.604890 CAGGTCTTTACGAATTAGGAATCTTTC 58.395 37.037 0.00 0.00 0.00 2.62
944 978 4.874396 GGGTTCAGGTCTTTACGAATTAGG 59.126 45.833 0.00 0.00 0.00 2.69
946 980 5.484715 CTGGGTTCAGGTCTTTACGAATTA 58.515 41.667 0.00 0.00 37.36 1.40
1005 1040 1.433879 CGTAGGGTTCAGGAGAGCG 59.566 63.158 0.00 0.00 0.00 5.03
1112 1147 3.579302 CTTGGACAGGGTGGGGCA 61.579 66.667 0.00 0.00 0.00 5.36
1114 1149 4.366684 GGCTTGGACAGGGTGGGG 62.367 72.222 0.00 0.00 0.00 4.96
1115 1150 4.722700 CGGCTTGGACAGGGTGGG 62.723 72.222 0.00 0.00 0.00 4.61
1337 1598 6.205464 AGCAGCGAGTAAATATGCATACATTT 59.795 34.615 8.99 10.38 39.34 2.32
1342 1603 6.025749 ACTAGCAGCGAGTAAATATGCATA 57.974 37.500 9.27 9.27 39.34 3.14
1344 1605 4.322080 ACTAGCAGCGAGTAAATATGCA 57.678 40.909 6.35 0.00 39.34 3.96
1349 1610 5.326200 ACTACAACTAGCAGCGAGTAAAT 57.674 39.130 8.78 0.50 0.00 1.40
1381 1642 4.771577 TCCATAACATGACAGCAACCAAAT 59.228 37.500 0.00 0.00 0.00 2.32
1419 1680 6.371278 AGGAGAAATTGATTGGCATACAGAT 58.629 36.000 0.00 0.00 0.00 2.90
1420 1681 5.759059 AGGAGAAATTGATTGGCATACAGA 58.241 37.500 0.00 0.00 0.00 3.41
1421 1682 6.127535 ACAAGGAGAAATTGATTGGCATACAG 60.128 38.462 0.00 0.00 0.00 2.74
1422 1683 5.716228 ACAAGGAGAAATTGATTGGCATACA 59.284 36.000 0.00 0.00 0.00 2.29
1423 1684 6.038356 CACAAGGAGAAATTGATTGGCATAC 58.962 40.000 0.00 0.00 0.00 2.39
1424 1685 5.127519 CCACAAGGAGAAATTGATTGGCATA 59.872 40.000 0.00 0.00 36.89 3.14
1425 1686 4.081309 CCACAAGGAGAAATTGATTGGCAT 60.081 41.667 0.00 0.00 36.89 4.40
1456 1719 1.205657 ACTCGTACAACACAACGCAG 58.794 50.000 0.00 0.00 38.94 5.18
1475 1738 3.368635 GCAGATTCCATGCATTGTCCAAA 60.369 43.478 0.00 0.00 43.31 3.28
1487 1750 4.350225 AGACAGGTATGATGCAGATTCCAT 59.650 41.667 0.00 0.00 0.00 3.41
1497 1760 3.068165 TGGCTCGTAAGACAGGTATGATG 59.932 47.826 0.00 0.00 45.01 3.07
1505 1768 2.389059 CGATCATGGCTCGTAAGACAG 58.611 52.381 9.57 0.00 46.05 3.51
1513 1776 0.460109 TCACAACCGATCATGGCTCG 60.460 55.000 10.49 10.49 35.92 5.03
1591 1857 1.134818 CAGCACTATTAGCGTGTCCCA 60.135 52.381 0.00 0.00 37.01 4.37
1611 1878 7.524294 TCTTGCTGTTCAAAAATTCAGAAAC 57.476 32.000 0.00 0.00 33.65 2.78
1752 2019 3.005791 GGTTGGCAAACTTCATAGCAAGT 59.994 43.478 8.31 0.00 38.30 3.16
2037 2304 5.396484 CCATGCACACTGAACAGATAAAAG 58.604 41.667 8.87 0.00 0.00 2.27
2050 2317 1.679977 GATGGTGGCCATGCACACT 60.680 57.895 9.72 0.00 45.26 3.55
2111 2378 7.566879 AGATCAACCTCTCCTTACATTCACTAT 59.433 37.037 0.00 0.00 0.00 2.12
2142 2409 7.264947 CAGAACCCAGTTTCAACTACAAAATT 58.735 34.615 0.00 0.00 37.08 1.82
2512 2779 3.485743 GGTGTGTTGCGAATGAAGAAAAC 59.514 43.478 0.00 0.00 0.00 2.43
2633 2900 0.185901 ATTGGCCAACTGACCAGTGT 59.814 50.000 23.27 0.00 41.58 3.55
2773 3043 4.758674 CCAGACATCATGGGCATAAGTAAG 59.241 45.833 0.00 0.00 33.94 2.34
2899 3169 6.768861 TGTAACGAATAATAAATCCCCACCAG 59.231 38.462 0.00 0.00 0.00 4.00
2939 3210 2.654749 TACGCTTCAGGTGATGACTG 57.345 50.000 0.00 0.00 37.77 3.51
3063 3334 7.278875 AGAAGCAGAAATAGAATAGACTTGGG 58.721 38.462 0.00 0.00 0.00 4.12
3140 3411 6.644248 AAAGTTGTAGCGGATAAAAGGTTT 57.356 33.333 0.00 0.00 0.00 3.27
3152 3423 4.631813 AGCTTCTCCATTAAAGTTGTAGCG 59.368 41.667 0.00 0.00 0.00 4.26
3239 3510 4.759693 TCAAGCGAAATTCATGTAACCAGT 59.240 37.500 0.00 0.00 0.00 4.00
3377 3648 8.029642 ACGGAATTATTTTCTTATATGAGCGG 57.970 34.615 0.00 0.00 0.00 5.52
3597 3868 1.731424 CGGCTCGACGAAACACTATGT 60.731 52.381 0.00 0.00 35.47 2.29
3699 3977 4.291783 GAGGCTGTTACTAACGCATCTAG 58.708 47.826 16.26 0.00 38.07 2.43
3748 4029 2.169769 GGATAAACCCACATCCGAGTCA 59.830 50.000 0.00 0.00 31.87 3.41
3842 4123 4.819761 GTGCGAGCGGGCAGATGA 62.820 66.667 4.92 0.00 44.93 2.92
3974 4255 1.338973 ACGAAGGTGAGCAGTCGTAAA 59.661 47.619 10.87 0.00 44.36 2.01
4027 4308 3.002791 GAGATCCGCAATGTCAAAGTCA 58.997 45.455 0.00 0.00 0.00 3.41
4180 4464 9.477484 AATATTAATCACACTCTAAACTAGGCG 57.523 33.333 0.00 0.00 0.00 5.52
4214 4498 9.070179 CAATCCAGATTAATACCATGACAATCA 57.930 33.333 0.00 0.00 0.00 2.57
4216 4500 9.645128 TTCAATCCAGATTAATACCATGACAAT 57.355 29.630 0.00 0.00 0.00 2.71
4355 4639 4.559153 TCTCATTTGCCAAAGCTTAAAGC 58.441 39.130 0.00 3.67 42.84 3.51
4413 4697 5.055265 TCAAGGGAAAGAATGTGGTTGTA 57.945 39.130 0.00 0.00 0.00 2.41
4416 4700 4.285863 TGTTCAAGGGAAAGAATGTGGTT 58.714 39.130 0.00 0.00 34.13 3.67
4438 4722 3.004106 GTGCTGCAAAAGACTTCTCACAT 59.996 43.478 2.77 0.00 0.00 3.21
4447 4731 4.641777 GCCTGTGCTGCAAAAGAC 57.358 55.556 2.77 0.00 33.53 3.01
4580 4864 5.368523 TCTGAAACCGAATCCATATAAGGGT 59.631 40.000 0.00 0.00 0.00 4.34
4910 5194 1.321474 TCGACTACTTCCACAACCGT 58.679 50.000 0.00 0.00 0.00 4.83
4949 5233 1.063492 AGGTTTTTGGGGGACGTCTTT 60.063 47.619 16.46 0.00 0.00 2.52
4950 5234 0.554305 AGGTTTTTGGGGGACGTCTT 59.446 50.000 16.46 0.00 0.00 3.01
5006 5291 2.247635 AGATAGTAGGGCTCCAGAACCA 59.752 50.000 0.00 0.00 0.00 3.67
5024 5309 2.126463 CGACCACGTGCACGAGAT 60.126 61.111 42.94 26.27 43.02 2.75
5124 5409 9.860898 ATAAAGATAAATTCAGCAACCTTTGTC 57.139 29.630 0.00 0.00 0.00 3.18
5174 5459 2.480759 CGACTCGGATCGTGGGTTTATT 60.481 50.000 1.61 0.00 37.33 1.40
5284 5569 6.496571 CGTTTTATATTTGCCGGTTGGAATA 58.503 36.000 1.90 3.51 37.49 1.75
5322 5607 1.601759 GCCAAGCCAAGCTCAGACA 60.602 57.895 0.00 0.00 38.25 3.41
5337 5622 3.305539 GCACATGTTTCATGAAAGAGCCA 60.306 43.478 21.05 15.16 0.00 4.75
5371 5661 1.143183 GATAAACGCCGCTCCTCCA 59.857 57.895 0.00 0.00 0.00 3.86
5379 5669 2.194271 GAAGAGGACAGATAAACGCCG 58.806 52.381 0.00 0.00 0.00 6.46
5380 5670 2.552031 GGAAGAGGACAGATAAACGCC 58.448 52.381 0.00 0.00 0.00 5.68
5384 5674 3.846588 AGCTTGGGAAGAGGACAGATAAA 59.153 43.478 0.00 0.00 0.00 1.40
5385 5675 3.452627 GAGCTTGGGAAGAGGACAGATAA 59.547 47.826 0.00 0.00 0.00 1.75
5390 5683 1.734655 AAGAGCTTGGGAAGAGGACA 58.265 50.000 0.00 0.00 0.00 4.02
5534 5827 5.067805 GCAGTTTGTAGCTTTAGCCCATATT 59.932 40.000 0.00 0.00 43.38 1.28
5632 5925 6.605594 TGTTTGGCTTCCTTTTCTCTTTCTAA 59.394 34.615 0.00 0.00 0.00 2.10
5755 6048 1.826385 AAAGAGCATGGAGGGTTTCG 58.174 50.000 0.00 0.00 0.00 3.46
5883 6176 4.097892 TCAAAAGACAGTCAAAAGGCCTTC 59.902 41.667 20.79 6.08 0.00 3.46
5898 6191 8.094798 TCAATACCAACATGTAGTCAAAAGAC 57.905 34.615 0.00 0.00 0.00 3.01
5899 6192 8.684386 TTCAATACCAACATGTAGTCAAAAGA 57.316 30.769 0.00 0.00 0.00 2.52
5964 6322 1.278699 TCCTACATCACTGTGCATGCA 59.721 47.619 18.46 18.46 36.79 3.96
5969 6327 1.734465 GTGCTTCCTACATCACTGTGC 59.266 52.381 2.12 0.00 36.79 4.57
6426 6784 2.726373 CGCGTTTCAATATTTGCCGACA 60.726 45.455 0.00 0.00 0.00 4.35
6427 6785 1.837747 CGCGTTTCAATATTTGCCGAC 59.162 47.619 0.00 0.00 0.00 4.79
6428 6786 1.465387 ACGCGTTTCAATATTTGCCGA 59.535 42.857 5.58 0.00 0.00 5.54
6429 6787 1.889891 ACGCGTTTCAATATTTGCCG 58.110 45.000 5.58 0.00 0.00 5.69
6430 6788 4.259253 GCTTTACGCGTTTCAATATTTGCC 60.259 41.667 20.78 0.00 0.00 4.52
6431 6789 4.322274 TGCTTTACGCGTTTCAATATTTGC 59.678 37.500 20.78 8.23 43.27 3.68
6432 6790 5.340932 TGTGCTTTACGCGTTTCAATATTTG 59.659 36.000 20.78 0.00 43.27 2.32
6433 6791 5.453648 TGTGCTTTACGCGTTTCAATATTT 58.546 33.333 20.78 0.00 43.27 1.40
6434 6792 5.037015 TGTGCTTTACGCGTTTCAATATT 57.963 34.783 20.78 0.00 43.27 1.28
6435 6793 4.671880 TGTGCTTTACGCGTTTCAATAT 57.328 36.364 20.78 0.00 43.27 1.28
6436 6794 4.399112 CATGTGCTTTACGCGTTTCAATA 58.601 39.130 20.78 0.00 43.27 1.90
6437 6795 3.233578 CATGTGCTTTACGCGTTTCAAT 58.766 40.909 20.78 0.00 43.27 2.57
6438 6796 2.645163 CATGTGCTTTACGCGTTTCAA 58.355 42.857 20.78 1.93 43.27 2.69
6447 6805 2.684881 AGCTACCATGCATGTGCTTTAC 59.315 45.455 24.58 7.85 42.66 2.01
6679 7088 2.134789 ATGCGATTGGAAGCTCCTTT 57.865 45.000 0.00 0.00 37.46 3.11
6721 7130 6.110411 TCTAATTAATTCGGGATGAGGGAC 57.890 41.667 3.39 0.00 0.00 4.46
6727 7136 7.345192 CGTCAAGTTCTAATTAATTCGGGATG 58.655 38.462 3.39 0.00 0.00 3.51
6804 7222 1.080434 GATTAGCTCTAGGCCGCCG 60.080 63.158 3.05 0.00 43.05 6.46
6831 7249 2.027745 TCTGACCTCCACATCAAGAAGC 60.028 50.000 0.00 0.00 0.00 3.86
6837 7255 1.607801 CGCCTCTGACCTCCACATCA 61.608 60.000 0.00 0.00 0.00 3.07
6861 7279 1.133216 TCACCGAAGAATCTGAGAGCG 59.867 52.381 0.00 0.00 0.00 5.03
6879 7297 3.678806 GCGTCTATTTCCAGACCACATCA 60.679 47.826 0.00 0.00 41.65 3.07
6912 7330 1.878953 ACAAAATTCTCGTCACGGCT 58.121 45.000 0.00 0.00 0.00 5.52
6941 7359 2.550208 CCACCAGTACTGTGGAGTTTCC 60.550 54.545 27.18 0.00 40.44 3.13
6968 7386 5.867903 ACCACATTTCCAGACAATTTGAA 57.132 34.783 2.79 0.00 0.00 2.69
6980 7398 4.335416 TCTCCAGATTCAACCACATTTCC 58.665 43.478 0.00 0.00 0.00 3.13
7089 7524 9.715121 AATTAATAAGAGTTAAACACGTGAGGA 57.285 29.630 25.01 2.98 0.00 3.71
7120 7555 7.334421 GCTCTGTTTCATGACAAGTATAGGAAA 59.666 37.037 0.00 0.00 0.00 3.13
7121 7556 6.818644 GCTCTGTTTCATGACAAGTATAGGAA 59.181 38.462 0.00 0.00 0.00 3.36
7154 7632 2.293399 ACCCACTGAAATTTGCTTCGTC 59.707 45.455 0.00 0.00 0.00 4.20
7240 7728 1.252215 CCATGCCACAGCCACATCAA 61.252 55.000 0.00 0.00 38.69 2.57
7396 7914 1.339055 CCTCTTTGATCCCGTCAAGCA 60.339 52.381 0.00 0.00 46.85 3.91
7420 7938 2.263741 CGCACAGCTGCCTTTCCTT 61.264 57.895 15.27 0.00 40.73 3.36
7530 8062 8.555361 GCCAAAACAAAACTTGAAAATATAGCA 58.445 29.630 0.00 0.00 0.00 3.49
7531 8063 8.555361 TGCCAAAACAAAACTTGAAAATATAGC 58.445 29.630 0.00 0.00 0.00 2.97
7541 8081 4.496175 GCAGGATTGCCAAAACAAAACTTG 60.496 41.667 0.00 0.00 44.74 3.16
7686 8226 6.094048 CAGGTCCTTGGTTATACTTCAACATG 59.906 42.308 0.00 0.00 0.00 3.21
7717 8257 3.508426 GGAGGGGGTAGTTAGTATCCAG 58.492 54.545 0.00 0.00 32.67 3.86
7718 8258 2.158415 CGGAGGGGGTAGTTAGTATCCA 60.158 54.545 0.00 0.00 32.67 3.41
7719 8259 2.158400 ACGGAGGGGGTAGTTAGTATCC 60.158 54.545 0.00 0.00 0.00 2.59
7720 8260 3.153130 GACGGAGGGGGTAGTTAGTATC 58.847 54.545 0.00 0.00 0.00 2.24
7721 8261 2.788215 AGACGGAGGGGGTAGTTAGTAT 59.212 50.000 0.00 0.00 0.00 2.12
7722 8262 2.208872 AGACGGAGGGGGTAGTTAGTA 58.791 52.381 0.00 0.00 0.00 1.82
7723 8263 1.006020 AGACGGAGGGGGTAGTTAGT 58.994 55.000 0.00 0.00 0.00 2.24
7724 8264 3.303351 TTAGACGGAGGGGGTAGTTAG 57.697 52.381 0.00 0.00 0.00 2.34
7725 8265 3.979501 ATTAGACGGAGGGGGTAGTTA 57.020 47.619 0.00 0.00 0.00 2.24
7726 8266 2.862850 ATTAGACGGAGGGGGTAGTT 57.137 50.000 0.00 0.00 0.00 2.24
7727 8267 3.501751 CCATATTAGACGGAGGGGGTAGT 60.502 52.174 0.00 0.00 0.00 2.73
7728 8268 3.097614 CCATATTAGACGGAGGGGGTAG 58.902 54.545 0.00 0.00 0.00 3.18
7729 8269 2.225445 CCCATATTAGACGGAGGGGGTA 60.225 54.545 0.00 0.00 32.59 3.69
7730 8270 1.484446 CCCATATTAGACGGAGGGGGT 60.484 57.143 0.00 0.00 32.59 4.95
7732 8272 1.900486 GTCCCATATTAGACGGAGGGG 59.100 57.143 0.00 0.00 36.92 4.79
7739 8279 2.826725 CTCCCTCCGTCCCATATTAGAC 59.173 54.545 0.00 0.00 0.00 2.59
7740 8280 2.449730 ACTCCCTCCGTCCCATATTAGA 59.550 50.000 0.00 0.00 0.00 2.10
7741 8281 2.890814 ACTCCCTCCGTCCCATATTAG 58.109 52.381 0.00 0.00 0.00 1.73
7742 8282 3.816842 GCTACTCCCTCCGTCCCATATTA 60.817 52.174 0.00 0.00 0.00 0.98
7743 8283 2.890814 CTACTCCCTCCGTCCCATATT 58.109 52.381 0.00 0.00 0.00 1.28
7746 8286 1.457831 GCTACTCCCTCCGTCCCAT 60.458 63.158 0.00 0.00 0.00 4.00
7747 8287 2.043248 GCTACTCCCTCCGTCCCA 60.043 66.667 0.00 0.00 0.00 4.37
7748 8288 0.178970 TATGCTACTCCCTCCGTCCC 60.179 60.000 0.00 0.00 0.00 4.46
7749 8289 1.202903 TCTATGCTACTCCCTCCGTCC 60.203 57.143 0.00 0.00 0.00 4.79
7768 8308 4.935205 TGACTTGTACTATTGTGCACCATC 59.065 41.667 15.69 0.00 38.47 3.51
7780 8320 5.368145 GCATCATGGGAATGACTTGTACTA 58.632 41.667 0.00 0.00 32.79 1.82
7783 8323 3.205338 CGCATCATGGGAATGACTTGTA 58.795 45.455 0.00 0.00 32.79 2.41
7793 8333 1.438399 GCATTTGCGCATCATGGGA 59.562 52.632 24.12 2.13 31.21 4.37
7804 8344 0.097674 ACGAGAGATTGCGCATTTGC 59.902 50.000 12.75 4.03 37.78 3.68
7805 8345 2.159667 TGAACGAGAGATTGCGCATTTG 60.160 45.455 12.75 1.47 0.00 2.32
7806 8346 2.076100 TGAACGAGAGATTGCGCATTT 58.924 42.857 12.75 0.75 0.00 2.32
7807 8347 1.394917 GTGAACGAGAGATTGCGCATT 59.605 47.619 12.75 8.03 0.00 3.56
7822 8362 8.837059 GTGTGACGTTTATTCATAAATGTGAAC 58.163 33.333 17.94 15.61 46.68 3.18
7850 8390 6.464222 TCGAAGAAACATCTTCACAATAGGT 58.536 36.000 16.31 0.00 44.58 3.08
7859 8399 6.633668 TCGAGAAATCGAAGAAACATCTTC 57.366 37.500 8.22 8.22 43.58 2.87
7890 8430 0.108329 CATACGCCCGACCAAAGACT 60.108 55.000 0.00 0.00 0.00 3.24
7891 8431 1.702491 GCATACGCCCGACCAAAGAC 61.702 60.000 0.00 0.00 0.00 3.01
7948 8495 1.353022 ACCACCATTCACCACGGTAAT 59.647 47.619 0.00 0.00 0.00 1.89
7949 8496 0.766131 ACCACCATTCACCACGGTAA 59.234 50.000 0.00 0.00 0.00 2.85
7960 8507 2.791347 TAATACGCACCACCACCATT 57.209 45.000 0.00 0.00 0.00 3.16
7968 8515 3.127203 CCGACCAAAAATAATACGCACCA 59.873 43.478 0.00 0.00 0.00 4.17
7969 8516 3.487879 CCCGACCAAAAATAATACGCACC 60.488 47.826 0.00 0.00 0.00 5.01
7970 8517 3.687200 CCCGACCAAAAATAATACGCAC 58.313 45.455 0.00 0.00 0.00 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.