Multiple sequence alignment - TraesCS2B01G342800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G342800 chr2B 100.000 3442 0 0 1 3442 488911868 488915309 0.000000e+00 6357.0
1 TraesCS2B01G342800 chr2B 81.532 444 79 3 1 443 385216152 385215711 2.520000e-96 363.0
2 TraesCS2B01G342800 chr2B 80.952 441 77 5 4 443 634363866 634363432 3.290000e-90 342.0
3 TraesCS2B01G342800 chr2B 96.923 130 4 0 2060 2189 11940446 11940317 5.780000e-53 219.0
4 TraesCS2B01G342800 chr2A 92.693 1615 94 17 1401 3006 573337261 573335662 0.000000e+00 2307.0
5 TraesCS2B01G342800 chr2A 92.808 723 35 11 685 1403 573338004 573337295 0.000000e+00 1031.0
6 TraesCS2B01G342800 chr2A 81.499 427 69 5 24 443 119077092 119077515 3.290000e-90 342.0
7 TraesCS2B01G342800 chr2D 92.583 1591 84 18 310 1885 416931593 416933164 0.000000e+00 2254.0
8 TraesCS2B01G342800 chr2D 93.947 1140 57 8 1871 3006 416933335 416934466 0.000000e+00 1712.0
9 TraesCS2B01G342800 chr2D 93.962 265 15 1 1 264 416931336 416931600 1.920000e-107 399.0
10 TraesCS2B01G342800 chr2D 100.000 28 0 0 3016 3043 422762033 422762060 6.000000e-03 52.8
11 TraesCS2B01G342800 chr4B 97.238 688 19 0 1744 2431 631234814 631235501 0.000000e+00 1166.0
12 TraesCS2B01G342800 chr4B 100.000 28 0 0 3015 3042 358485543 358485516 6.000000e-03 52.8
13 TraesCS2B01G342800 chr3B 95.574 723 32 0 1709 2431 743085380 743086102 0.000000e+00 1158.0
14 TraesCS2B01G342800 chr3B 80.235 425 77 5 19 441 60420283 60419864 2.580000e-81 313.0
15 TraesCS2B01G342800 chr3B 95.276 127 6 0 2063 2189 670975041 670974915 5.820000e-48 202.0
16 TraesCS2B01G342800 chr3B 88.889 99 10 1 458 555 556966951 556966853 1.680000e-23 121.0
17 TraesCS2B01G342800 chr7B 96.069 636 22 3 1801 2436 304271731 304271099 0.000000e+00 1033.0
18 TraesCS2B01G342800 chr7B 89.412 85 9 0 1196 1280 367496655 367496571 1.310000e-19 108.0
19 TraesCS2B01G342800 chr7B 100.000 28 0 0 3015 3042 582664128 582664101 6.000000e-03 52.8
20 TraesCS2B01G342800 chr1D 82.366 448 68 11 1 444 454780630 454781070 2.510000e-101 379.0
21 TraesCS2B01G342800 chr5D 81.306 444 81 2 1 443 490162358 490162800 3.270000e-95 359.0
22 TraesCS2B01G342800 chr5D 97.674 43 1 0 2147 2189 425527703 425527661 1.320000e-09 75.0
23 TraesCS2B01G342800 chr5D 100.000 28 0 0 3016 3043 48409886 48409913 6.000000e-03 52.8
24 TraesCS2B01G342800 chr7D 80.674 445 70 11 1 441 515827910 515828342 7.120000e-87 331.0
25 TraesCS2B01G342800 chr7D 100.000 48 0 0 2384 2431 335466755 335466802 4.730000e-14 89.8
26 TraesCS2B01G342800 chr7D 100.000 48 0 0 2384 2431 630001971 630002018 4.730000e-14 89.8
27 TraesCS2B01G342800 chr3D 81.793 357 63 2 88 443 313105312 313104957 7.220000e-77 298.0
28 TraesCS2B01G342800 chr3D 100.000 48 0 0 2384 2431 385610641 385610688 4.730000e-14 89.8
29 TraesCS2B01G342800 chr3D 80.392 102 20 0 501 602 17118727 17118828 1.020000e-10 78.7
30 TraesCS2B01G342800 chrUn 85.047 107 16 0 458 564 20499938 20499832 3.630000e-20 110.0
31 TraesCS2B01G342800 chr4D 98.039 51 1 0 2384 2434 492075028 492074978 4.730000e-14 89.8
32 TraesCS2B01G342800 chr4D 97.674 43 1 0 2147 2189 492075070 492075028 1.320000e-09 75.0
33 TraesCS2B01G342800 chr5A 83.908 87 13 1 512 598 408178615 408178530 7.920000e-12 82.4
34 TraesCS2B01G342800 chr5B 78.626 131 16 7 450 579 415662288 415662169 3.680000e-10 76.8
35 TraesCS2B01G342800 chr5B 100.000 28 0 0 3015 3042 513616461 513616434 6.000000e-03 52.8
36 TraesCS2B01G342800 chr7A 100.000 28 0 0 3015 3042 387213801 387213828 6.000000e-03 52.8
37 TraesCS2B01G342800 chr6B 100.000 28 0 0 3015 3042 88181068 88181095 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G342800 chr2B 488911868 488915309 3441 False 6357 6357 100.000000 1 3442 1 chr2B.!!$F1 3441
1 TraesCS2B01G342800 chr2A 573335662 573338004 2342 True 1669 2307 92.750500 685 3006 2 chr2A.!!$R1 2321
2 TraesCS2B01G342800 chr2D 416931336 416934466 3130 False 1455 2254 93.497333 1 3006 3 chr2D.!!$F2 3005
3 TraesCS2B01G342800 chr4B 631234814 631235501 687 False 1166 1166 97.238000 1744 2431 1 chr4B.!!$F1 687
4 TraesCS2B01G342800 chr3B 743085380 743086102 722 False 1158 1158 95.574000 1709 2431 1 chr3B.!!$F1 722
5 TraesCS2B01G342800 chr7B 304271099 304271731 632 True 1033 1033 96.069000 1801 2436 1 chr7B.!!$R1 635

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
585 588 0.034574 AATAGTGTTGGATGGCGGCA 60.035 50.0 16.34 16.34 0.0 5.69 F
865 874 0.175073 GAAGCCGTCCGATGTAGGTT 59.825 55.0 0.00 0.00 0.0 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1772 1827 0.378257 ATTGTTTATGCTCGCCTGCG 59.622 50.000 4.92 4.92 41.35 5.18 R
2758 2999 2.232696 TGCAAGCAGATGTACTCGGTTA 59.767 45.455 0.00 0.00 0.00 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.009695 AGGAGGAGAAGAAGACGAAGAGA 59.990 47.826 0.00 0.00 0.00 3.10
102 103 4.543590 TGATCAAAGAGAGGAAGGTCAC 57.456 45.455 0.00 0.00 0.00 3.67
115 116 0.038159 AGGTCACGCTCGAGGAAAAG 60.038 55.000 15.58 0.00 0.00 2.27
154 155 3.535561 CAATGCGGAGGAGTACAAGATT 58.464 45.455 0.00 0.00 0.00 2.40
161 162 4.565564 CGGAGGAGTACAAGATTTTTACCG 59.434 45.833 0.00 0.00 0.00 4.02
173 174 3.881780 TTTTTACCGTGAATGTGGACG 57.118 42.857 0.00 0.00 35.31 4.79
231 233 0.740868 GCTACCAGATGTTGCAGCGA 60.741 55.000 0.00 0.00 43.93 4.93
250 252 2.417719 GACAGAAAGATCAGTTGGCGT 58.582 47.619 0.00 0.00 0.00 5.68
252 254 1.391485 CAGAAAGATCAGTTGGCGTCG 59.609 52.381 0.00 0.00 0.00 5.12
272 274 2.278013 GGACGACGAGGATGCGAC 60.278 66.667 0.00 0.00 34.83 5.19
275 277 3.872728 CGACGAGGATGCGACGGA 61.873 66.667 10.69 0.00 43.43 4.69
276 278 2.024871 GACGAGGATGCGACGGAG 59.975 66.667 10.69 0.00 34.83 4.63
277 279 3.471244 GACGAGGATGCGACGGAGG 62.471 68.421 10.69 0.00 34.83 4.30
278 280 4.933064 CGAGGATGCGACGGAGGC 62.933 72.222 0.00 0.00 0.00 4.70
279 281 4.933064 GAGGATGCGACGGAGGCG 62.933 72.222 0.00 0.00 0.00 5.52
281 283 3.896133 GGATGCGACGGAGGCGTA 61.896 66.667 0.00 0.00 0.00 4.42
282 284 2.654404 GATGCGACGGAGGCGTAC 60.654 66.667 0.00 0.00 0.00 3.67
283 285 4.203076 ATGCGACGGAGGCGTACC 62.203 66.667 0.00 0.00 0.00 3.34
295 297 4.842091 CGTACCCGGACGCGAAGG 62.842 72.222 15.93 12.88 35.79 3.46
296 298 3.752339 GTACCCGGACGCGAAGGT 61.752 66.667 15.93 15.85 36.36 3.50
297 299 2.990967 TACCCGGACGCGAAGGTT 60.991 61.111 15.93 3.59 33.70 3.50
298 300 3.285523 TACCCGGACGCGAAGGTTG 62.286 63.158 15.93 3.64 33.70 3.77
302 304 2.263540 GGACGCGAAGGTTGCCTA 59.736 61.111 15.93 0.00 31.13 3.93
303 305 1.153429 GGACGCGAAGGTTGCCTAT 60.153 57.895 15.93 0.00 31.13 2.57
304 306 1.429148 GGACGCGAAGGTTGCCTATG 61.429 60.000 15.93 0.00 31.13 2.23
305 307 2.036764 GACGCGAAGGTTGCCTATGC 62.037 60.000 15.93 0.00 31.13 3.14
306 308 2.709475 GCGAAGGTTGCCTATGCG 59.291 61.111 0.00 0.00 41.78 4.73
307 309 2.823829 GCGAAGGTTGCCTATGCGG 61.824 63.158 0.00 0.00 41.78 5.69
326 328 1.575922 CGACGACGACACCACCTTA 59.424 57.895 0.00 0.00 42.66 2.69
328 330 1.401931 CGACGACGACACCACCTTAAT 60.402 52.381 0.00 0.00 42.66 1.40
330 332 1.067354 ACGACGACACCACCTTAATCC 60.067 52.381 0.00 0.00 0.00 3.01
337 339 0.988832 ACCACCTTAATCCGGAAGCA 59.011 50.000 9.01 0.00 0.00 3.91
383 385 2.099062 CAGAAATGCGCGGACTGC 59.901 61.111 8.83 0.00 41.47 4.40
384 386 2.046892 AGAAATGCGCGGACTGCT 60.047 55.556 8.83 0.00 43.27 4.24
385 387 1.083806 CAGAAATGCGCGGACTGCTA 61.084 55.000 8.83 0.00 43.27 3.49
396 398 3.522553 GCGGACTGCTAGACTTATGTTT 58.477 45.455 0.00 0.00 41.73 2.83
397 399 3.933332 GCGGACTGCTAGACTTATGTTTT 59.067 43.478 0.00 0.00 41.73 2.43
433 435 6.751888 GGGCATGTAAAAACTAAGCATACTTG 59.248 38.462 0.00 0.00 36.57 3.16
469 472 5.644636 CGGGTAACATACTTGCCTCTTTTTA 59.355 40.000 0.00 0.00 39.74 1.52
472 475 7.825761 GGGTAACATACTTGCCTCTTTTTAGTA 59.174 37.037 0.00 0.00 39.74 1.82
473 476 9.392259 GGTAACATACTTGCCTCTTTTTAGTAT 57.608 33.333 0.00 0.00 33.52 2.12
480 483 6.316390 ACTTGCCTCTTTTTAGTATTGATCGG 59.684 38.462 0.00 0.00 0.00 4.18
507 510 2.257409 ATCCGGTGCTGGTGTGATCC 62.257 60.000 0.00 0.00 0.00 3.36
571 574 6.814506 ACTAGCGAACATATACCGAATAGT 57.185 37.500 0.00 0.00 0.00 2.12
584 587 0.663153 GAATAGTGTTGGATGGCGGC 59.337 55.000 0.00 0.00 0.00 6.53
585 588 0.034574 AATAGTGTTGGATGGCGGCA 60.035 50.000 16.34 16.34 0.00 5.69
606 609 5.220261 GCATCCTGCATCTGTATTCACAGT 61.220 45.833 4.81 0.00 46.48 3.55
620 624 2.825223 TCACAGTCTGATCCTGTCCAT 58.175 47.619 6.91 0.00 41.10 3.41
621 625 3.981212 TCACAGTCTGATCCTGTCCATA 58.019 45.455 6.91 0.00 41.10 2.74
628 632 5.304101 AGTCTGATCCTGTCCATAGATGAAC 59.696 44.000 0.00 0.00 0.00 3.18
654 658 1.799994 ACGAATTTTACGGGTCGTTGG 59.200 47.619 0.00 0.00 43.78 3.77
655 659 2.067766 CGAATTTTACGGGTCGTTGGA 58.932 47.619 0.00 0.00 41.54 3.53
657 661 3.328505 GAATTTTACGGGTCGTTGGAGA 58.671 45.455 0.00 0.00 41.54 3.71
658 662 3.622166 ATTTTACGGGTCGTTGGAGAT 57.378 42.857 0.00 0.00 41.54 2.75
762 771 4.946784 CCGTAGAAAATGGGTTTGAGAG 57.053 45.455 0.00 0.00 0.00 3.20
827 836 1.628846 ACAAGCCATCCTAACCGTTCT 59.371 47.619 0.00 0.00 0.00 3.01
845 854 3.186345 TCGTTACATCGAGGCCTCT 57.814 52.632 29.73 14.17 34.85 3.69
865 874 0.175073 GAAGCCGTCCGATGTAGGTT 59.825 55.000 0.00 0.00 0.00 3.50
868 877 1.027357 GCCGTCCGATGTAGGTTAGA 58.973 55.000 0.00 0.00 0.00 2.10
1318 1335 2.359354 CCCGAACCATTGGCGTGA 60.359 61.111 1.54 0.00 0.00 4.35
1319 1336 2.398554 CCCGAACCATTGGCGTGAG 61.399 63.158 1.54 0.00 0.00 3.51
1412 1465 4.685169 TTTCATTTCTGATGGTTCGCTC 57.315 40.909 0.00 0.00 0.00 5.03
1547 1602 8.877808 TTCATCAGCTACATGTTCTAAGTATG 57.122 34.615 2.30 2.05 0.00 2.39
1549 1604 8.138074 TCATCAGCTACATGTTCTAAGTATGTC 58.862 37.037 2.30 0.00 36.52 3.06
1702 1757 5.678047 GTGTGAATGTTGAAAATTTTGCTGC 59.322 36.000 8.47 0.00 0.00 5.25
1772 1827 7.230510 TGGGTATAGTTGCAATTTATCACCATC 59.769 37.037 0.59 3.49 0.00 3.51
1795 1850 2.679837 CAGGCGAGCATAAACAATCTGT 59.320 45.455 0.00 0.00 0.00 3.41
1796 1851 3.127548 CAGGCGAGCATAAACAATCTGTT 59.872 43.478 0.00 0.00 43.41 3.16
2019 2254 8.854614 ATCTCCATTGTATGCTTATTTAGTCC 57.145 34.615 0.00 0.00 0.00 3.85
2286 2523 3.271490 AGGCTGTTAGGGAGAGGTTAGTA 59.729 47.826 0.00 0.00 0.00 1.82
2304 2541 6.649557 GGTTAGTACATCTTGTTGTAACTGCT 59.350 38.462 0.00 0.00 34.05 4.24
2575 2816 1.689233 TTCCGAGGGTGGATCTGGG 60.689 63.158 0.00 0.00 38.00 4.45
2580 2821 1.381872 AGGGTGGATCTGGGTCTCG 60.382 63.158 0.00 0.00 0.00 4.04
2830 3071 1.201424 GGTCCATCGAGTTACCCCTT 58.799 55.000 0.00 0.00 0.00 3.95
2866 3111 3.992643 CAGAGCTGAGCTATGCAACTAT 58.007 45.455 16.67 0.00 40.91 2.12
2867 3112 4.378774 CAGAGCTGAGCTATGCAACTATT 58.621 43.478 16.67 0.00 40.91 1.73
2868 3113 4.815308 CAGAGCTGAGCTATGCAACTATTT 59.185 41.667 16.67 0.00 40.91 1.40
2869 3114 5.987953 CAGAGCTGAGCTATGCAACTATTTA 59.012 40.000 16.67 0.00 40.91 1.40
2898 3143 0.974383 GAAAGTCTCTTCCGGGTCCA 59.026 55.000 0.00 0.00 0.00 4.02
2911 3156 0.107165 GGGTCCAGGGTGTGCTATTC 60.107 60.000 0.00 0.00 0.00 1.75
2978 3223 6.925610 ATAGCGATTGATTGAAACTGCTTA 57.074 33.333 0.00 0.00 32.93 3.09
2983 3234 6.402550 GCGATTGATTGAAACTGCTTAAGAGA 60.403 38.462 6.67 0.00 0.00 3.10
2985 3236 8.017373 CGATTGATTGAAACTGCTTAAGAGAAA 58.983 33.333 6.67 0.00 0.00 2.52
2987 3238 7.206981 TGATTGAAACTGCTTAAGAGAAAGG 57.793 36.000 6.67 0.00 0.00 3.11
2988 3239 6.772716 TGATTGAAACTGCTTAAGAGAAAGGT 59.227 34.615 6.67 0.00 0.00 3.50
2989 3240 7.936847 TGATTGAAACTGCTTAAGAGAAAGGTA 59.063 33.333 6.67 0.00 0.00 3.08
2990 3241 7.492352 TTGAAACTGCTTAAGAGAAAGGTAC 57.508 36.000 6.67 0.00 0.00 3.34
2991 3242 5.995897 TGAAACTGCTTAAGAGAAAGGTACC 59.004 40.000 6.67 2.73 0.00 3.34
3006 3257 1.102978 GTACCCATGCAACATGGTCC 58.897 55.000 21.80 8.27 37.48 4.46
3007 3258 0.998928 TACCCATGCAACATGGTCCT 59.001 50.000 21.80 9.11 37.48 3.85
3008 3259 0.114954 ACCCATGCAACATGGTCCTT 59.885 50.000 21.80 4.22 37.48 3.36
3009 3260 0.533491 CCCATGCAACATGGTCCTTG 59.467 55.000 21.80 3.21 37.48 3.61
3010 3261 0.108520 CCATGCAACATGGTCCTTGC 60.109 55.000 16.81 10.87 42.67 4.01
3011 3262 0.892755 CATGCAACATGGTCCTTGCT 59.107 50.000 16.78 3.63 42.77 3.91
3012 3263 2.093890 CATGCAACATGGTCCTTGCTA 58.906 47.619 16.78 6.77 42.77 3.49
3013 3264 2.512692 TGCAACATGGTCCTTGCTAT 57.487 45.000 16.78 0.00 42.77 2.97
3014 3265 3.643199 TGCAACATGGTCCTTGCTATA 57.357 42.857 16.78 0.00 42.77 1.31
3015 3266 3.278574 TGCAACATGGTCCTTGCTATAC 58.721 45.455 16.78 0.00 42.77 1.47
3016 3267 2.618709 GCAACATGGTCCTTGCTATACC 59.381 50.000 10.59 0.00 39.79 2.73
3017 3268 3.214328 CAACATGGTCCTTGCTATACCC 58.786 50.000 4.67 0.00 31.97 3.69
3018 3269 1.416401 ACATGGTCCTTGCTATACCCG 59.584 52.381 4.67 0.00 31.97 5.28
3019 3270 1.056660 ATGGTCCTTGCTATACCCGG 58.943 55.000 0.00 0.00 31.97 5.73
3020 3271 1.070957 GGTCCTTGCTATACCCGGC 59.929 63.158 0.00 0.00 0.00 6.13
3021 3272 1.070957 GTCCTTGCTATACCCGGCC 59.929 63.158 0.00 0.00 0.00 6.13
3022 3273 2.144738 TCCTTGCTATACCCGGCCC 61.145 63.158 0.00 0.00 0.00 5.80
3023 3274 2.030562 CTTGCTATACCCGGCCCG 59.969 66.667 0.00 0.00 0.00 6.13
3024 3275 2.444329 TTGCTATACCCGGCCCGA 60.444 61.111 3.71 0.00 0.00 5.14
3025 3276 2.035237 CTTGCTATACCCGGCCCGAA 62.035 60.000 3.71 0.00 0.00 4.30
3026 3277 1.624479 TTGCTATACCCGGCCCGAAA 61.624 55.000 3.71 0.00 0.00 3.46
3027 3278 1.146707 GCTATACCCGGCCCGAAAA 59.853 57.895 3.71 0.00 0.00 2.29
3028 3279 0.464193 GCTATACCCGGCCCGAAAAA 60.464 55.000 3.71 0.00 0.00 1.94
3029 3280 1.589803 CTATACCCGGCCCGAAAAAG 58.410 55.000 3.71 0.00 0.00 2.27
3030 3281 0.464193 TATACCCGGCCCGAAAAAGC 60.464 55.000 3.71 0.00 0.00 3.51
3031 3282 3.797398 TATACCCGGCCCGAAAAAGCC 62.797 57.143 3.71 0.00 46.17 4.35
3035 3286 3.744719 GGCCCGAAAAAGCCCGAC 61.745 66.667 0.00 0.00 43.76 4.79
3036 3287 3.744719 GCCCGAAAAAGCCCGACC 61.745 66.667 0.00 0.00 0.00 4.79
3037 3288 2.033602 CCCGAAAAAGCCCGACCT 59.966 61.111 0.00 0.00 0.00 3.85
3038 3289 2.332654 CCCGAAAAAGCCCGACCTG 61.333 63.158 0.00 0.00 0.00 4.00
3039 3290 2.332654 CCGAAAAAGCCCGACCTGG 61.333 63.158 0.00 0.00 37.55 4.45
3056 3307 4.865629 GCCTTGGGCCTAGGTTTT 57.134 55.556 30.45 0.00 44.06 2.43
3057 3308 2.276869 GCCTTGGGCCTAGGTTTTG 58.723 57.895 30.45 9.47 44.06 2.44
3058 3309 0.251608 GCCTTGGGCCTAGGTTTTGA 60.252 55.000 30.45 0.00 44.06 2.69
3059 3310 1.825641 GCCTTGGGCCTAGGTTTTGAA 60.826 52.381 30.45 1.49 44.06 2.69
3060 3311 1.893137 CCTTGGGCCTAGGTTTTGAAC 59.107 52.381 23.96 0.00 0.00 3.18
3099 3350 4.506255 GCCTAGGCCCGCCACATT 62.506 66.667 24.19 0.00 38.92 2.71
3100 3351 2.275418 CCTAGGCCCGCCACATTT 59.725 61.111 8.74 0.00 38.92 2.32
3101 3352 2.120909 CCTAGGCCCGCCACATTTG 61.121 63.158 8.74 0.00 38.92 2.32
3102 3353 2.753849 TAGGCCCGCCACATTTGC 60.754 61.111 8.74 0.00 38.92 3.68
3103 3354 3.575703 TAGGCCCGCCACATTTGCA 62.576 57.895 8.74 0.00 38.92 4.08
3104 3355 4.001226 GGCCCGCCACATTTGCAA 62.001 61.111 0.00 0.00 35.81 4.08
3105 3356 2.265424 GCCCGCCACATTTGCAAT 59.735 55.556 0.00 0.00 0.00 3.56
3106 3357 1.375780 GCCCGCCACATTTGCAATT 60.376 52.632 0.00 0.00 0.00 2.32
3107 3358 0.954938 GCCCGCCACATTTGCAATTT 60.955 50.000 0.00 0.00 0.00 1.82
3108 3359 1.674221 GCCCGCCACATTTGCAATTTA 60.674 47.619 0.00 0.00 0.00 1.40
3109 3360 1.999024 CCCGCCACATTTGCAATTTAC 59.001 47.619 0.00 0.00 0.00 2.01
3110 3361 2.353605 CCCGCCACATTTGCAATTTACT 60.354 45.455 0.00 0.00 0.00 2.24
3111 3362 2.667481 CCGCCACATTTGCAATTTACTG 59.333 45.455 0.00 0.00 0.00 2.74
3112 3363 3.573598 CGCCACATTTGCAATTTACTGA 58.426 40.909 0.00 0.00 0.00 3.41
3113 3364 3.986572 CGCCACATTTGCAATTTACTGAA 59.013 39.130 0.00 0.00 0.00 3.02
3114 3365 4.447054 CGCCACATTTGCAATTTACTGAAA 59.553 37.500 0.00 0.00 0.00 2.69
3115 3366 5.050499 CGCCACATTTGCAATTTACTGAAAA 60.050 36.000 0.00 0.00 0.00 2.29
3116 3367 6.365050 GCCACATTTGCAATTTACTGAAAAG 58.635 36.000 0.00 0.00 27.16 2.27
3117 3368 6.566376 GCCACATTTGCAATTTACTGAAAAGG 60.566 38.462 0.00 0.00 32.87 3.11
3118 3369 6.365050 CACATTTGCAATTTACTGAAAAGGC 58.635 36.000 0.00 0.00 30.25 4.35
3119 3370 6.203338 CACATTTGCAATTTACTGAAAAGGCT 59.797 34.615 0.00 0.00 30.25 4.58
3120 3371 6.203338 ACATTTGCAATTTACTGAAAAGGCTG 59.797 34.615 0.00 0.00 30.25 4.85
3121 3372 4.935352 TGCAATTTACTGAAAAGGCTGT 57.065 36.364 0.00 0.00 34.24 4.40
3122 3373 4.619973 TGCAATTTACTGAAAAGGCTGTG 58.380 39.130 0.00 0.00 34.24 3.66
3123 3374 3.989817 GCAATTTACTGAAAAGGCTGTGG 59.010 43.478 0.00 0.00 31.81 4.17
3124 3375 4.559153 CAATTTACTGAAAAGGCTGTGGG 58.441 43.478 0.00 0.00 0.00 4.61
3125 3376 3.306472 TTTACTGAAAAGGCTGTGGGT 57.694 42.857 0.00 0.00 0.00 4.51
3126 3377 3.306472 TTACTGAAAAGGCTGTGGGTT 57.694 42.857 0.00 0.00 0.00 4.11
3127 3378 2.159179 ACTGAAAAGGCTGTGGGTTT 57.841 45.000 0.00 0.00 0.00 3.27
3128 3379 2.466846 ACTGAAAAGGCTGTGGGTTTT 58.533 42.857 0.00 0.00 0.00 2.43
3129 3380 2.837591 ACTGAAAAGGCTGTGGGTTTTT 59.162 40.909 0.00 0.00 0.00 1.94
3144 3395 2.053618 TTTTTGTTGATGGGCCGGG 58.946 52.632 2.18 0.00 0.00 5.73
3145 3396 2.105806 TTTTTGTTGATGGGCCGGGC 62.106 55.000 22.00 22.00 0.00 6.13
3146 3397 3.521765 TTTGTTGATGGGCCGGGCT 62.522 57.895 28.80 9.11 0.00 5.19
3147 3398 3.521765 TTGTTGATGGGCCGGGCTT 62.522 57.895 28.80 15.95 0.00 4.35
3148 3399 3.451894 GTTGATGGGCCGGGCTTG 61.452 66.667 28.80 0.00 0.00 4.01
3149 3400 4.757355 TTGATGGGCCGGGCTTGG 62.757 66.667 28.80 0.00 0.00 3.61
3177 3428 2.611225 TTTTTGCATCGGGCTTTGTT 57.389 40.000 0.00 0.00 45.15 2.83
3178 3429 3.735237 TTTTTGCATCGGGCTTTGTTA 57.265 38.095 0.00 0.00 45.15 2.41
3179 3430 3.296322 TTTTGCATCGGGCTTTGTTAG 57.704 42.857 0.00 0.00 45.15 2.34
3180 3431 1.173043 TTGCATCGGGCTTTGTTAGG 58.827 50.000 0.00 0.00 45.15 2.69
3187 3438 2.568003 GGCTTTGTTAGGCCTGACC 58.432 57.895 23.81 8.96 44.48 4.02
3198 3449 4.767255 CCTGACCTGAGGCACGGC 62.767 72.222 0.00 0.00 0.00 5.68
3219 3470 2.423446 GCCCGACAGATGGCTAGG 59.577 66.667 0.00 0.00 44.46 3.02
3220 3471 2.435693 GCCCGACAGATGGCTAGGT 61.436 63.158 0.00 0.00 44.46 3.08
3221 3472 1.443407 CCCGACAGATGGCTAGGTG 59.557 63.158 0.00 0.00 0.00 4.00
3222 3473 1.330655 CCCGACAGATGGCTAGGTGT 61.331 60.000 0.00 0.00 0.00 4.16
3223 3474 1.399714 CCGACAGATGGCTAGGTGTA 58.600 55.000 0.00 0.00 0.00 2.90
3224 3475 1.964223 CCGACAGATGGCTAGGTGTAT 59.036 52.381 0.00 0.00 0.00 2.29
3225 3476 3.154710 CCGACAGATGGCTAGGTGTATA 58.845 50.000 0.00 0.00 0.00 1.47
3226 3477 3.191581 CCGACAGATGGCTAGGTGTATAG 59.808 52.174 0.00 0.00 0.00 1.31
3227 3478 3.821600 CGACAGATGGCTAGGTGTATAGT 59.178 47.826 0.00 0.00 0.00 2.12
3228 3479 4.083217 CGACAGATGGCTAGGTGTATAGTC 60.083 50.000 0.00 0.00 0.00 2.59
3229 3480 4.153411 ACAGATGGCTAGGTGTATAGTCC 58.847 47.826 0.00 0.00 0.00 3.85
3230 3481 4.140900 ACAGATGGCTAGGTGTATAGTCCT 60.141 45.833 0.00 1.92 37.80 3.85
3231 3482 5.074652 ACAGATGGCTAGGTGTATAGTCCTA 59.925 44.000 0.00 3.70 35.51 2.94
3240 3491 8.325421 CTAGGTGTATAGTCCTAGTACATGTG 57.675 42.308 9.11 0.00 44.71 3.21
3241 3492 6.907961 AGGTGTATAGTCCTAGTACATGTGA 58.092 40.000 9.11 0.00 31.71 3.58
3242 3493 6.771749 AGGTGTATAGTCCTAGTACATGTGAC 59.228 42.308 9.11 6.89 31.71 3.67
3243 3494 6.544931 GGTGTATAGTCCTAGTACATGTGACA 59.455 42.308 9.11 0.00 31.71 3.58
3244 3495 7.230913 GGTGTATAGTCCTAGTACATGTGACAT 59.769 40.741 9.11 0.00 31.71 3.06
3245 3496 8.291032 GTGTATAGTCCTAGTACATGTGACATC 58.709 40.741 9.11 0.59 31.71 3.06
3246 3497 8.218488 TGTATAGTCCTAGTACATGTGACATCT 58.782 37.037 9.11 2.01 0.00 2.90
3247 3498 5.843673 AGTCCTAGTACATGTGACATCTG 57.156 43.478 9.11 0.00 0.00 2.90
3248 3499 5.265191 AGTCCTAGTACATGTGACATCTGT 58.735 41.667 9.11 0.00 0.00 3.41
3249 3500 6.424032 AGTCCTAGTACATGTGACATCTGTA 58.576 40.000 9.11 0.00 0.00 2.74
3250 3501 7.063593 AGTCCTAGTACATGTGACATCTGTAT 58.936 38.462 9.11 0.00 0.00 2.29
3251 3502 8.218488 AGTCCTAGTACATGTGACATCTGTATA 58.782 37.037 9.11 0.00 0.00 1.47
3252 3503 8.508062 GTCCTAGTACATGTGACATCTGTATAG 58.492 40.741 9.11 2.94 0.00 1.31
3253 3504 8.437575 TCCTAGTACATGTGACATCTGTATAGA 58.562 37.037 9.11 0.00 37.35 1.98
3254 3505 8.508062 CCTAGTACATGTGACATCTGTATAGAC 58.492 40.741 9.11 0.00 35.34 2.59
3255 3506 9.278978 CTAGTACATGTGACATCTGTATAGACT 57.721 37.037 9.11 0.90 35.34 3.24
3256 3507 8.526667 AGTACATGTGACATCTGTATAGACTT 57.473 34.615 9.11 0.00 35.34 3.01
3257 3508 8.972127 AGTACATGTGACATCTGTATAGACTTT 58.028 33.333 9.11 0.00 35.34 2.66
3258 3509 9.239002 GTACATGTGACATCTGTATAGACTTTC 57.761 37.037 9.11 0.00 35.34 2.62
3259 3510 7.840931 ACATGTGACATCTGTATAGACTTTCA 58.159 34.615 0.00 0.00 35.34 2.69
3260 3511 8.314021 ACATGTGACATCTGTATAGACTTTCAA 58.686 33.333 0.00 0.00 35.34 2.69
3261 3512 8.815189 CATGTGACATCTGTATAGACTTTCAAG 58.185 37.037 0.00 0.00 35.34 3.02
3262 3513 7.896811 TGTGACATCTGTATAGACTTTCAAGT 58.103 34.615 0.00 0.00 43.16 3.16
3263 3514 7.814587 TGTGACATCTGTATAGACTTTCAAGTG 59.185 37.037 0.00 0.00 39.88 3.16
3264 3515 7.815068 GTGACATCTGTATAGACTTTCAAGTGT 59.185 37.037 0.00 0.00 39.88 3.55
3265 3516 8.029522 TGACATCTGTATAGACTTTCAAGTGTC 58.970 37.037 0.00 8.03 39.88 3.67
3266 3517 8.128322 ACATCTGTATAGACTTTCAAGTGTCT 57.872 34.615 0.00 0.00 44.56 3.41
3267 3518 8.247562 ACATCTGTATAGACTTTCAAGTGTCTC 58.752 37.037 0.00 0.00 41.92 3.36
3268 3519 8.465999 CATCTGTATAGACTTTCAAGTGTCTCT 58.534 37.037 0.00 0.00 41.92 3.10
3269 3520 8.410673 TCTGTATAGACTTTCAAGTGTCTCTT 57.589 34.615 0.00 0.00 41.92 2.85
3270 3521 8.516234 TCTGTATAGACTTTCAAGTGTCTCTTC 58.484 37.037 0.00 0.00 41.92 2.87
3271 3522 8.410673 TGTATAGACTTTCAAGTGTCTCTTCT 57.589 34.615 0.00 0.00 41.92 2.85
3272 3523 8.861086 TGTATAGACTTTCAAGTGTCTCTTCTT 58.139 33.333 0.00 0.00 41.92 2.52
3273 3524 9.699703 GTATAGACTTTCAAGTGTCTCTTCTTT 57.300 33.333 0.00 0.00 41.92 2.52
3274 3525 6.917217 AGACTTTCAAGTGTCTCTTCTTTG 57.083 37.500 0.00 0.00 39.04 2.77
3275 3526 5.819901 AGACTTTCAAGTGTCTCTTCTTTGG 59.180 40.000 0.00 0.00 39.04 3.28
3276 3527 4.336713 ACTTTCAAGTGTCTCTTCTTTGGC 59.663 41.667 0.00 0.00 37.98 4.52
3277 3528 2.851195 TCAAGTGTCTCTTCTTTGGCC 58.149 47.619 0.00 0.00 33.63 5.36
3278 3529 2.172505 TCAAGTGTCTCTTCTTTGGCCA 59.827 45.455 0.00 0.00 33.63 5.36
3279 3530 2.262423 AGTGTCTCTTCTTTGGCCAC 57.738 50.000 3.88 0.00 0.00 5.01
3280 3531 1.771255 AGTGTCTCTTCTTTGGCCACT 59.229 47.619 3.88 0.00 0.00 4.00
3281 3532 2.173569 AGTGTCTCTTCTTTGGCCACTT 59.826 45.455 3.88 0.00 0.00 3.16
3282 3533 2.291741 GTGTCTCTTCTTTGGCCACTTG 59.708 50.000 3.88 0.00 0.00 3.16
3283 3534 1.882623 GTCTCTTCTTTGGCCACTTGG 59.117 52.381 3.88 0.00 38.53 3.61
3284 3535 1.774254 TCTCTTCTTTGGCCACTTGGA 59.226 47.619 3.88 0.00 37.39 3.53
3285 3536 2.174639 TCTCTTCTTTGGCCACTTGGAA 59.825 45.455 3.88 6.81 37.39 3.53
3286 3537 2.555757 CTCTTCTTTGGCCACTTGGAAG 59.444 50.000 20.83 20.83 37.39 3.46
3287 3538 2.091885 TCTTCTTTGGCCACTTGGAAGT 60.092 45.455 23.49 0.00 40.60 3.01
3300 3551 4.739046 CTTGGAAGTGCACAAGTTAGAG 57.261 45.455 21.04 4.07 39.30 2.43
3301 3552 3.838244 TGGAAGTGCACAAGTTAGAGT 57.162 42.857 21.04 0.00 0.00 3.24
3302 3553 4.150897 TGGAAGTGCACAAGTTAGAGTT 57.849 40.909 21.04 0.05 0.00 3.01
3303 3554 3.876914 TGGAAGTGCACAAGTTAGAGTTG 59.123 43.478 21.04 0.00 34.77 3.16
3304 3555 3.304057 GGAAGTGCACAAGTTAGAGTTGC 60.304 47.826 21.04 2.40 31.85 4.17
3305 3556 2.917933 AGTGCACAAGTTAGAGTTGCA 58.082 42.857 21.04 0.00 31.85 4.08
3306 3557 2.874701 AGTGCACAAGTTAGAGTTGCAG 59.125 45.455 21.04 0.00 31.85 4.41
3307 3558 1.603802 TGCACAAGTTAGAGTTGCAGC 59.396 47.619 0.00 0.00 35.05 5.25
3308 3559 1.068954 GCACAAGTTAGAGTTGCAGCC 60.069 52.381 0.00 0.00 31.85 4.85
3309 3560 1.195448 CACAAGTTAGAGTTGCAGCCG 59.805 52.381 0.00 0.00 31.85 5.52
3310 3561 1.070134 ACAAGTTAGAGTTGCAGCCGA 59.930 47.619 0.00 0.00 31.85 5.54
3311 3562 2.143122 CAAGTTAGAGTTGCAGCCGAA 58.857 47.619 0.00 0.00 0.00 4.30
3312 3563 1.797025 AGTTAGAGTTGCAGCCGAAC 58.203 50.000 0.00 2.32 0.00 3.95
3313 3564 0.796927 GTTAGAGTTGCAGCCGAACC 59.203 55.000 0.00 0.00 0.00 3.62
3314 3565 0.685097 TTAGAGTTGCAGCCGAACCT 59.315 50.000 0.00 0.00 0.00 3.50
3315 3566 0.685097 TAGAGTTGCAGCCGAACCTT 59.315 50.000 0.00 0.00 0.00 3.50
3316 3567 0.603975 AGAGTTGCAGCCGAACCTTC 60.604 55.000 0.00 0.00 0.00 3.46
3317 3568 0.603975 GAGTTGCAGCCGAACCTTCT 60.604 55.000 0.00 0.00 0.00 2.85
3318 3569 0.685097 AGTTGCAGCCGAACCTTCTA 59.315 50.000 0.00 0.00 0.00 2.10
3319 3570 1.279271 AGTTGCAGCCGAACCTTCTAT 59.721 47.619 0.00 0.00 0.00 1.98
3320 3571 2.500098 AGTTGCAGCCGAACCTTCTATA 59.500 45.455 0.00 0.00 0.00 1.31
3321 3572 3.134804 AGTTGCAGCCGAACCTTCTATAT 59.865 43.478 0.00 0.00 0.00 0.86
3322 3573 3.838244 TGCAGCCGAACCTTCTATATT 57.162 42.857 0.00 0.00 0.00 1.28
3323 3574 3.466836 TGCAGCCGAACCTTCTATATTG 58.533 45.455 0.00 0.00 0.00 1.90
3324 3575 2.224314 GCAGCCGAACCTTCTATATTGC 59.776 50.000 0.00 0.00 0.00 3.56
3325 3576 2.808543 CAGCCGAACCTTCTATATTGCC 59.191 50.000 0.00 0.00 0.00 4.52
3326 3577 2.152016 GCCGAACCTTCTATATTGCCC 58.848 52.381 0.00 0.00 0.00 5.36
3327 3578 2.224548 GCCGAACCTTCTATATTGCCCT 60.225 50.000 0.00 0.00 0.00 5.19
3328 3579 3.403038 CCGAACCTTCTATATTGCCCTG 58.597 50.000 0.00 0.00 0.00 4.45
3329 3580 2.808543 CGAACCTTCTATATTGCCCTGC 59.191 50.000 0.00 0.00 0.00 4.85
3330 3581 3.744214 CGAACCTTCTATATTGCCCTGCA 60.744 47.826 0.00 0.00 36.47 4.41
3331 3582 3.214696 ACCTTCTATATTGCCCTGCAC 57.785 47.619 0.00 0.00 38.71 4.57
3332 3583 2.158608 ACCTTCTATATTGCCCTGCACC 60.159 50.000 0.00 0.00 38.71 5.01
3333 3584 2.146342 CTTCTATATTGCCCTGCACCG 58.854 52.381 0.00 0.00 38.71 4.94
3334 3585 1.419381 TCTATATTGCCCTGCACCGA 58.581 50.000 0.00 0.00 38.71 4.69
3335 3586 1.977854 TCTATATTGCCCTGCACCGAT 59.022 47.619 0.00 0.00 38.71 4.18
3336 3587 2.079158 CTATATTGCCCTGCACCGATG 58.921 52.381 0.00 0.00 38.71 3.84
3337 3588 0.538057 ATATTGCCCTGCACCGATGG 60.538 55.000 0.00 0.00 38.71 3.51
3341 3592 4.864334 CCCTGCACCGATGGCCTC 62.864 72.222 3.32 0.00 0.00 4.70
3343 3594 4.457496 CTGCACCGATGGCCTCGT 62.457 66.667 18.94 8.20 46.18 4.18
3344 3595 3.071837 TGCACCGATGGCCTCGTA 61.072 61.111 18.94 0.00 46.18 3.43
3345 3596 2.279517 GCACCGATGGCCTCGTAG 60.280 66.667 18.94 13.30 46.18 3.51
3346 3597 3.077519 GCACCGATGGCCTCGTAGT 62.078 63.158 18.94 10.65 46.18 2.73
3347 3598 1.226974 CACCGATGGCCTCGTAGTG 60.227 63.158 18.94 16.50 46.18 2.74
3348 3599 1.379443 ACCGATGGCCTCGTAGTGA 60.379 57.895 18.94 0.00 46.18 3.41
3349 3600 1.065928 CCGATGGCCTCGTAGTGAC 59.934 63.158 18.94 0.00 46.18 3.67
3350 3601 1.065928 CGATGGCCTCGTAGTGACC 59.934 63.158 3.32 0.00 42.56 4.02
3351 3602 1.065928 GATGGCCTCGTAGTGACCG 59.934 63.158 3.32 0.00 0.00 4.79
3352 3603 2.351336 GATGGCCTCGTAGTGACCGG 62.351 65.000 3.32 0.00 0.00 5.28
3353 3604 3.066814 GGCCTCGTAGTGACCGGT 61.067 66.667 6.92 6.92 0.00 5.28
3354 3605 2.488820 GCCTCGTAGTGACCGGTC 59.511 66.667 28.17 28.17 0.00 4.79
3355 3606 2.338015 GCCTCGTAGTGACCGGTCA 61.338 63.158 33.23 33.23 37.24 4.02
3356 3607 1.870055 GCCTCGTAGTGACCGGTCAA 61.870 60.000 37.75 21.85 41.85 3.18
3357 3608 0.599558 CCTCGTAGTGACCGGTCAAA 59.400 55.000 37.75 25.67 41.85 2.69
3358 3609 1.000060 CCTCGTAGTGACCGGTCAAAA 60.000 52.381 37.75 25.31 41.85 2.44
3359 3610 2.546373 CCTCGTAGTGACCGGTCAAAAA 60.546 50.000 37.75 22.77 41.85 1.94
3374 3625 3.605946 AAAAACTGTGACCCAGCCA 57.394 47.368 0.00 0.00 45.68 4.75
3375 3626 2.086610 AAAAACTGTGACCCAGCCAT 57.913 45.000 0.00 0.00 45.68 4.40
3376 3627 2.969821 AAAACTGTGACCCAGCCATA 57.030 45.000 0.00 0.00 45.68 2.74
3377 3628 2.200373 AAACTGTGACCCAGCCATAC 57.800 50.000 0.00 0.00 45.68 2.39
3378 3629 0.328258 AACTGTGACCCAGCCATACC 59.672 55.000 0.00 0.00 45.68 2.73
3379 3630 0.547712 ACTGTGACCCAGCCATACCT 60.548 55.000 0.00 0.00 45.68 3.08
3380 3631 0.179000 CTGTGACCCAGCCATACCTC 59.821 60.000 0.00 0.00 33.59 3.85
3381 3632 0.252696 TGTGACCCAGCCATACCTCT 60.253 55.000 0.00 0.00 0.00 3.69
3382 3633 0.466124 GTGACCCAGCCATACCTCTC 59.534 60.000 0.00 0.00 0.00 3.20
3383 3634 0.042581 TGACCCAGCCATACCTCTCA 59.957 55.000 0.00 0.00 0.00 3.27
3384 3635 1.344393 TGACCCAGCCATACCTCTCAT 60.344 52.381 0.00 0.00 0.00 2.90
3385 3636 2.090775 TGACCCAGCCATACCTCTCATA 60.091 50.000 0.00 0.00 0.00 2.15
3386 3637 3.177228 GACCCAGCCATACCTCTCATAT 58.823 50.000 0.00 0.00 0.00 1.78
3387 3638 3.584848 GACCCAGCCATACCTCTCATATT 59.415 47.826 0.00 0.00 0.00 1.28
3388 3639 3.328931 ACCCAGCCATACCTCTCATATTG 59.671 47.826 0.00 0.00 0.00 1.90
3389 3640 3.307975 CCCAGCCATACCTCTCATATTGG 60.308 52.174 0.00 0.00 0.00 3.16
3390 3641 3.328931 CCAGCCATACCTCTCATATTGGT 59.671 47.826 0.00 0.00 37.83 3.67
3391 3642 4.564406 CCAGCCATACCTCTCATATTGGTC 60.564 50.000 0.00 0.00 35.48 4.02
3392 3643 4.285517 CAGCCATACCTCTCATATTGGTCT 59.714 45.833 0.00 0.00 35.48 3.85
3393 3644 5.481824 CAGCCATACCTCTCATATTGGTCTA 59.518 44.000 0.00 0.00 35.48 2.59
3394 3645 5.482175 AGCCATACCTCTCATATTGGTCTAC 59.518 44.000 0.00 0.00 35.48 2.59
3395 3646 5.246203 GCCATACCTCTCATATTGGTCTACA 59.754 44.000 0.00 0.00 35.48 2.74
3396 3647 6.692486 CCATACCTCTCATATTGGTCTACAC 58.308 44.000 0.00 0.00 35.48 2.90
3397 3648 6.267699 CCATACCTCTCATATTGGTCTACACA 59.732 42.308 0.00 0.00 35.48 3.72
3398 3649 7.038729 CCATACCTCTCATATTGGTCTACACAT 60.039 40.741 0.00 0.00 35.48 3.21
3399 3650 6.814954 ACCTCTCATATTGGTCTACACATT 57.185 37.500 0.00 0.00 0.00 2.71
3400 3651 6.586344 ACCTCTCATATTGGTCTACACATTG 58.414 40.000 0.00 0.00 0.00 2.82
3401 3652 5.994054 CCTCTCATATTGGTCTACACATTGG 59.006 44.000 0.00 0.00 0.00 3.16
3402 3653 6.408548 CCTCTCATATTGGTCTACACATTGGT 60.409 42.308 0.00 0.00 0.00 3.67
3403 3654 6.957631 TCTCATATTGGTCTACACATTGGTT 58.042 36.000 0.00 0.00 0.00 3.67
3404 3655 6.823182 TCTCATATTGGTCTACACATTGGTTG 59.177 38.462 0.00 0.00 0.00 3.77
3405 3656 6.716284 TCATATTGGTCTACACATTGGTTGA 58.284 36.000 0.00 0.00 0.00 3.18
3406 3657 6.597672 TCATATTGGTCTACACATTGGTTGAC 59.402 38.462 9.58 9.58 41.00 3.18
3407 3658 4.431416 TTGGTCTACACATTGGTTGACT 57.569 40.909 14.34 0.00 41.32 3.41
3408 3659 3.738982 TGGTCTACACATTGGTTGACTG 58.261 45.455 14.34 0.00 41.32 3.51
3409 3660 3.389656 TGGTCTACACATTGGTTGACTGA 59.610 43.478 14.34 5.04 41.32 3.41
3410 3661 3.746492 GGTCTACACATTGGTTGACTGAC 59.254 47.826 14.34 0.00 41.32 3.51
3411 3662 4.377021 GTCTACACATTGGTTGACTGACA 58.623 43.478 10.32 0.00 39.42 3.58
3412 3663 4.211374 GTCTACACATTGGTTGACTGACAC 59.789 45.833 10.32 0.00 39.42 3.67
3413 3664 2.297701 ACACATTGGTTGACTGACACC 58.702 47.619 0.00 0.00 0.00 4.16
3414 3665 1.608590 CACATTGGTTGACTGACACCC 59.391 52.381 0.00 0.00 0.00 4.61
3415 3666 1.247567 CATTGGTTGACTGACACCCC 58.752 55.000 0.00 0.00 29.47 4.95
3416 3667 1.149101 ATTGGTTGACTGACACCCCT 58.851 50.000 0.00 0.00 29.47 4.79
3417 3668 0.472471 TTGGTTGACTGACACCCCTC 59.528 55.000 0.00 0.00 29.47 4.30
3418 3669 0.692756 TGGTTGACTGACACCCCTCA 60.693 55.000 0.00 0.00 29.47 3.86
3419 3670 0.693049 GGTTGACTGACACCCCTCAT 59.307 55.000 0.00 0.00 0.00 2.90
3420 3671 1.906574 GGTTGACTGACACCCCTCATA 59.093 52.381 0.00 0.00 0.00 2.15
3421 3672 2.354805 GGTTGACTGACACCCCTCATAC 60.355 54.545 0.00 0.00 0.00 2.39
3422 3673 1.568504 TGACTGACACCCCTCATACC 58.431 55.000 0.00 0.00 0.00 2.73
3423 3674 0.831307 GACTGACACCCCTCATACCC 59.169 60.000 0.00 0.00 0.00 3.69
3424 3675 0.118346 ACTGACACCCCTCATACCCA 59.882 55.000 0.00 0.00 0.00 4.51
3425 3676 0.833287 CTGACACCCCTCATACCCAG 59.167 60.000 0.00 0.00 0.00 4.45
3426 3677 0.118346 TGACACCCCTCATACCCAGT 59.882 55.000 0.00 0.00 0.00 4.00
3427 3678 1.286248 GACACCCCTCATACCCAGTT 58.714 55.000 0.00 0.00 0.00 3.16
3428 3679 1.209747 GACACCCCTCATACCCAGTTC 59.790 57.143 0.00 0.00 0.00 3.01
3429 3680 1.285280 CACCCCTCATACCCAGTTCA 58.715 55.000 0.00 0.00 0.00 3.18
3430 3681 1.846439 CACCCCTCATACCCAGTTCAT 59.154 52.381 0.00 0.00 0.00 2.57
3431 3682 3.045634 CACCCCTCATACCCAGTTCATA 58.954 50.000 0.00 0.00 0.00 2.15
3432 3683 3.652869 CACCCCTCATACCCAGTTCATAT 59.347 47.826 0.00 0.00 0.00 1.78
3433 3684 3.910627 ACCCCTCATACCCAGTTCATATC 59.089 47.826 0.00 0.00 0.00 1.63
3434 3685 3.264450 CCCCTCATACCCAGTTCATATCC 59.736 52.174 0.00 0.00 0.00 2.59
3435 3686 3.055819 CCCTCATACCCAGTTCATATCCG 60.056 52.174 0.00 0.00 0.00 4.18
3436 3687 3.055819 CCTCATACCCAGTTCATATCCGG 60.056 52.174 0.00 0.00 0.00 5.14
3437 3688 2.903784 TCATACCCAGTTCATATCCGGG 59.096 50.000 0.00 0.00 43.02 5.73
3438 3689 1.724545 TACCCAGTTCATATCCGGGG 58.275 55.000 0.00 0.00 41.55 5.73
3439 3690 1.073199 CCCAGTTCATATCCGGGGC 59.927 63.158 0.00 0.00 32.88 5.80
3440 3691 1.418908 CCCAGTTCATATCCGGGGCT 61.419 60.000 0.00 0.00 32.88 5.19
3441 3692 1.348064 CCAGTTCATATCCGGGGCTA 58.652 55.000 0.00 0.00 0.00 3.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 5.709164 CCTCCATCAACAGTTTGAATCTCTT 59.291 40.000 0.00 0.00 45.01 2.85
22 23 2.489329 CGCCTCCATCAACAGTTTGAAT 59.511 45.455 0.00 0.00 45.01 2.57
61 62 0.112606 TGGTCCTCCACTCTTCGAGT 59.887 55.000 0.00 0.00 44.44 4.18
86 87 1.273886 GAGCGTGACCTTCCTCTCTTT 59.726 52.381 0.00 0.00 0.00 2.52
102 103 1.071605 CACCTTCTTTTCCTCGAGCG 58.928 55.000 6.99 0.19 0.00 5.03
131 132 0.981183 TTGTACTCCTCCGCATTGGT 59.019 50.000 0.00 0.00 39.52 3.67
143 144 7.744715 CACATTCACGGTAAAAATCTTGTACTC 59.255 37.037 0.00 0.00 0.00 2.59
154 155 1.532007 GCGTCCACATTCACGGTAAAA 59.468 47.619 0.00 0.00 36.50 1.52
161 162 1.234821 TCCAAAGCGTCCACATTCAC 58.765 50.000 0.00 0.00 0.00 3.18
173 174 0.179215 CTTGCGTCGACATCCAAAGC 60.179 55.000 17.16 9.32 0.00 3.51
231 233 2.417719 GACGCCAACTGATCTTTCTGT 58.582 47.619 0.00 0.00 35.75 3.41
260 262 3.518998 CCTCCGTCGCATCCTCGT 61.519 66.667 0.00 0.00 0.00 4.18
261 263 4.933064 GCCTCCGTCGCATCCTCG 62.933 72.222 0.00 0.00 0.00 4.63
262 264 4.933064 CGCCTCCGTCGCATCCTC 62.933 72.222 0.00 0.00 0.00 3.71
264 266 3.896133 TACGCCTCCGTCGCATCC 61.896 66.667 0.00 0.00 46.39 3.51
265 267 2.654404 GTACGCCTCCGTCGCATC 60.654 66.667 0.00 0.00 46.39 3.91
266 268 4.203076 GGTACGCCTCCGTCGCAT 62.203 66.667 0.00 0.00 46.39 4.73
278 280 4.842091 CCTTCGCGTCCGGGTACG 62.842 72.222 11.11 11.11 45.58 3.67
279 281 3.286915 AACCTTCGCGTCCGGGTAC 62.287 63.158 5.77 0.00 30.37 3.34
280 282 2.990967 AACCTTCGCGTCCGGGTA 60.991 61.111 5.77 0.00 30.37 3.69
281 283 4.675029 CAACCTTCGCGTCCGGGT 62.675 66.667 5.77 7.60 31.57 5.28
284 286 2.901051 ATAGGCAACCTTCGCGTCCG 62.901 60.000 5.77 0.00 34.61 4.79
285 287 1.153429 ATAGGCAACCTTCGCGTCC 60.153 57.895 5.77 0.00 34.61 4.79
286 288 2.006772 CATAGGCAACCTTCGCGTC 58.993 57.895 5.77 0.00 34.61 5.19
287 289 2.106683 GCATAGGCAACCTTCGCGT 61.107 57.895 5.77 0.00 40.72 6.01
288 290 2.709475 GCATAGGCAACCTTCGCG 59.291 61.111 0.00 0.00 40.72 5.87
289 291 2.709475 CGCATAGGCAACCTTCGC 59.291 61.111 0.00 0.00 41.24 4.70
290 292 3.409856 CCGCATAGGCAACCTTCG 58.590 61.111 0.00 0.00 41.24 3.79
299 301 4.246206 TCGTCGTCGCCGCATAGG 62.246 66.667 0.00 0.00 44.97 2.57
300 302 3.017314 GTCGTCGTCGCCGCATAG 61.017 66.667 0.00 0.00 36.96 2.23
301 303 3.801971 TGTCGTCGTCGCCGCATA 61.802 61.111 0.00 0.00 36.96 3.14
307 309 2.462255 TAAGGTGGTGTCGTCGTCGC 62.462 60.000 0.00 0.00 36.96 5.19
308 310 0.040157 TTAAGGTGGTGTCGTCGTCG 60.040 55.000 0.00 0.00 38.55 5.12
309 311 2.257034 GATTAAGGTGGTGTCGTCGTC 58.743 52.381 0.00 0.00 0.00 4.20
310 312 1.067354 GGATTAAGGTGGTGTCGTCGT 60.067 52.381 0.00 0.00 0.00 4.34
311 313 1.636988 GGATTAAGGTGGTGTCGTCG 58.363 55.000 0.00 0.00 0.00 5.12
312 314 1.636988 CGGATTAAGGTGGTGTCGTC 58.363 55.000 0.00 0.00 0.00 4.20
313 315 0.248289 CCGGATTAAGGTGGTGTCGT 59.752 55.000 0.00 0.00 0.00 4.34
354 356 2.905996 ATTTCTGCCCAGCCGGACA 61.906 57.895 5.05 0.00 0.00 4.02
362 364 4.713735 TCCGCGCATTTCTGCCCA 62.714 61.111 8.75 0.00 46.07 5.36
397 399 4.873746 TTTACATGCCCGAATCCAAAAA 57.126 36.364 0.00 0.00 0.00 1.94
445 448 2.981859 AGAGGCAAGTATGTTACCCG 57.018 50.000 0.00 0.00 0.00 5.28
469 472 0.392706 TCGCATGCCCGATCAATACT 59.607 50.000 13.15 0.00 31.36 2.12
472 475 4.806936 ATCGCATGCCCGATCAAT 57.193 50.000 13.15 0.00 43.91 2.57
494 497 2.261361 CGTCGGATCACACCAGCA 59.739 61.111 0.00 0.00 0.00 4.41
507 510 1.537289 CCGATCCATACAACGCGTCG 61.537 60.000 14.44 2.72 0.00 5.12
555 558 6.934645 CCATCCAACACTATTCGGTATATGTT 59.065 38.462 0.00 0.00 0.00 2.71
606 609 4.279420 CGTTCATCTATGGACAGGATCAGA 59.721 45.833 2.43 0.00 36.01 3.27
610 613 2.700371 TGCGTTCATCTATGGACAGGAT 59.300 45.455 2.43 0.00 36.01 3.24
620 624 5.856126 AAAATTCGTTCTGCGTTCATCTA 57.144 34.783 0.00 0.00 42.13 1.98
621 625 4.749245 AAAATTCGTTCTGCGTTCATCT 57.251 36.364 0.00 0.00 42.13 2.90
628 632 1.461897 ACCCGTAAAATTCGTTCTGCG 59.538 47.619 0.00 0.00 43.01 5.18
639 643 2.299582 TCATCTCCAACGACCCGTAAAA 59.700 45.455 0.00 0.00 39.99 1.52
643 647 0.175760 CATCATCTCCAACGACCCGT 59.824 55.000 0.00 0.00 43.97 5.28
654 658 6.400834 CGCTTGTATATGAAGTGCATCATCTC 60.401 42.308 6.08 0.68 40.44 2.75
655 659 5.407691 CGCTTGTATATGAAGTGCATCATCT 59.592 40.000 6.08 0.33 40.44 2.90
657 661 5.059161 ACGCTTGTATATGAAGTGCATCAT 58.941 37.500 7.87 7.87 42.52 2.45
658 662 4.441792 ACGCTTGTATATGAAGTGCATCA 58.558 39.130 8.88 0.00 38.44 3.07
704 711 8.500837 TGTTCGTTAGAAAAGCAACATTAATG 57.499 30.769 14.01 14.01 38.23 1.90
772 781 2.159000 ACTTTTCTCCTTGACGGTCGTT 60.159 45.455 3.34 0.00 0.00 3.85
827 836 0.738975 CAGAGGCCTCGATGTAACGA 59.261 55.000 26.95 0.00 40.00 3.85
845 854 0.968901 ACCTACATCGGACGGCTTCA 60.969 55.000 0.00 0.00 0.00 3.02
865 874 1.646447 AGGGAGGATGCGGGATATCTA 59.354 52.381 2.05 0.00 0.00 1.98
868 877 1.747444 AAAGGGAGGATGCGGGATAT 58.253 50.000 0.00 0.00 0.00 1.63
960 977 4.847444 GCTTCTCTCTGCGGGGGC 62.847 72.222 0.00 0.00 0.00 5.80
1291 1308 1.562672 ATGGTTCGGGAAGGGGTGAG 61.563 60.000 0.00 0.00 0.00 3.51
1293 1310 0.965363 CAATGGTTCGGGAAGGGGTG 60.965 60.000 0.00 0.00 0.00 4.61
1330 1347 6.092259 ACGAAGATGAAACTACAATAGGCAAC 59.908 38.462 0.00 0.00 0.00 4.17
1331 1348 6.170506 ACGAAGATGAAACTACAATAGGCAA 58.829 36.000 0.00 0.00 0.00 4.52
1332 1349 5.730550 ACGAAGATGAAACTACAATAGGCA 58.269 37.500 0.00 0.00 0.00 4.75
1333 1350 6.663944 AACGAAGATGAAACTACAATAGGC 57.336 37.500 0.00 0.00 0.00 3.93
1412 1465 2.203001 TACCATCGCCACGCCATG 60.203 61.111 0.00 0.00 0.00 3.66
1452 1505 9.341078 TGTGTATACATGCAACATCAAATAGAT 57.659 29.630 9.18 0.00 37.48 1.98
1614 1669 7.285629 TGTTGTATGTAATCAGTTTTGGGTTCA 59.714 33.333 0.00 0.00 0.00 3.18
1619 1674 7.083858 CCACTGTTGTATGTAATCAGTTTTGG 58.916 38.462 0.00 0.00 37.27 3.28
1702 1757 9.638300 GTTCATTTGTAATAGTAGCAATCTTCG 57.362 33.333 0.00 0.00 0.00 3.79
1732 1787 8.994429 CAACTATACCCAATGTTGCAATTAAA 57.006 30.769 0.59 0.00 34.38 1.52
1772 1827 0.378257 ATTGTTTATGCTCGCCTGCG 59.622 50.000 4.92 4.92 41.35 5.18
1795 1850 7.507733 TCTACGGTTTTTAGGCATTACAAAA 57.492 32.000 0.00 0.00 0.00 2.44
1796 1851 7.507733 TTCTACGGTTTTTAGGCATTACAAA 57.492 32.000 0.00 0.00 0.00 2.83
2286 2523 3.569701 CCCAAGCAGTTACAACAAGATGT 59.430 43.478 0.00 0.00 37.32 3.06
2304 2541 4.885907 AGACGATAGAGAACGATAACCCAA 59.114 41.667 0.00 0.00 41.38 4.12
2580 2821 6.536224 ACACAAAGTAATAGCATACGGGTAAC 59.464 38.462 0.00 0.00 32.33 2.50
2758 2999 2.232696 TGCAAGCAGATGTACTCGGTTA 59.767 45.455 0.00 0.00 0.00 2.85
2830 3071 6.348786 GCTCAGCTCTGTTTCATGACAAATAA 60.349 38.462 0.00 0.00 0.00 1.40
2866 3111 1.342174 AGACTTTCGCCGACACCTAAA 59.658 47.619 0.00 0.00 0.00 1.85
2867 3112 0.963962 AGACTTTCGCCGACACCTAA 59.036 50.000 0.00 0.00 0.00 2.69
2868 3113 0.524862 GAGACTTTCGCCGACACCTA 59.475 55.000 0.00 0.00 0.00 3.08
2869 3114 1.179814 AGAGACTTTCGCCGACACCT 61.180 55.000 0.00 0.00 0.00 4.00
2898 3143 3.043999 GCCGGGAATAGCACACCCT 62.044 63.158 2.18 0.00 41.28 4.34
2911 3156 3.053896 GGGAGAAAACGTGCCGGG 61.054 66.667 2.18 0.00 0.00 5.73
2987 3238 1.102978 GGACCATGTTGCATGGGTAC 58.897 55.000 26.01 17.84 43.32 3.34
2988 3239 0.998928 AGGACCATGTTGCATGGGTA 59.001 50.000 26.01 0.00 43.32 3.69
2989 3240 0.114954 AAGGACCATGTTGCATGGGT 59.885 50.000 26.01 14.91 43.32 4.51
2990 3241 0.533491 CAAGGACCATGTTGCATGGG 59.467 55.000 26.01 12.41 43.32 4.00
2991 3242 0.108520 GCAAGGACCATGTTGCATGG 60.109 55.000 22.35 22.35 46.83 3.66
3006 3257 2.030562 CGGGCCGGGTATAGCAAG 59.969 66.667 20.56 0.00 0.00 4.01
3007 3258 1.624479 TTTCGGGCCGGGTATAGCAA 61.624 55.000 27.98 7.27 0.00 3.91
3008 3259 1.624479 TTTTCGGGCCGGGTATAGCA 61.624 55.000 27.98 0.00 0.00 3.49
3009 3260 0.464193 TTTTTCGGGCCGGGTATAGC 60.464 55.000 27.98 0.00 0.00 2.97
3010 3261 1.589803 CTTTTTCGGGCCGGGTATAG 58.410 55.000 27.98 13.25 0.00 1.31
3011 3262 0.464193 GCTTTTTCGGGCCGGGTATA 60.464 55.000 27.98 2.30 0.00 1.47
3012 3263 1.751544 GCTTTTTCGGGCCGGGTAT 60.752 57.895 27.98 0.00 0.00 2.73
3013 3264 2.360225 GCTTTTTCGGGCCGGGTA 60.360 61.111 27.98 9.28 0.00 3.69
3018 3269 3.744719 GTCGGGCTTTTTCGGGCC 61.745 66.667 0.00 0.00 46.89 5.80
3019 3270 3.744719 GGTCGGGCTTTTTCGGGC 61.745 66.667 0.00 0.00 0.00 6.13
3020 3271 2.033602 AGGTCGGGCTTTTTCGGG 59.966 61.111 0.00 0.00 0.00 5.14
3021 3272 2.332654 CCAGGTCGGGCTTTTTCGG 61.333 63.158 0.00 0.00 0.00 4.30
3022 3273 3.263941 CCAGGTCGGGCTTTTTCG 58.736 61.111 0.00 0.00 0.00 3.46
3040 3291 1.893137 GTTCAAAACCTAGGCCCAAGG 59.107 52.381 18.27 18.27 40.20 3.61
3082 3333 4.506255 AATGTGGCGGGCCTAGGC 62.506 66.667 26.55 26.55 41.06 3.93
3083 3334 2.120909 CAAATGTGGCGGGCCTAGG 61.121 63.158 11.55 3.67 36.94 3.02
3084 3335 2.774799 GCAAATGTGGCGGGCCTAG 61.775 63.158 11.55 0.00 36.94 3.02
3085 3336 2.753849 GCAAATGTGGCGGGCCTA 60.754 61.111 11.55 0.40 36.94 3.93
3086 3337 4.992740 TGCAAATGTGGCGGGCCT 62.993 61.111 11.55 0.00 36.94 5.19
3087 3338 2.801483 AATTGCAAATGTGGCGGGCC 62.801 55.000 1.71 1.86 0.00 5.80
3088 3339 0.954938 AAATTGCAAATGTGGCGGGC 60.955 50.000 1.71 0.00 0.00 6.13
3089 3340 1.999024 GTAAATTGCAAATGTGGCGGG 59.001 47.619 1.71 0.00 0.00 6.13
3090 3341 2.667481 CAGTAAATTGCAAATGTGGCGG 59.333 45.455 1.71 0.00 0.00 6.13
3091 3342 3.573598 TCAGTAAATTGCAAATGTGGCG 58.426 40.909 1.71 0.00 0.00 5.69
3092 3343 5.921004 TTTCAGTAAATTGCAAATGTGGC 57.079 34.783 1.71 0.00 0.00 5.01
3093 3344 6.566376 GCCTTTTCAGTAAATTGCAAATGTGG 60.566 38.462 1.71 0.00 0.00 4.17
3094 3345 6.203338 AGCCTTTTCAGTAAATTGCAAATGTG 59.797 34.615 1.71 0.00 0.00 3.21
3095 3346 6.203338 CAGCCTTTTCAGTAAATTGCAAATGT 59.797 34.615 1.71 0.00 0.00 2.71
3096 3347 6.203338 ACAGCCTTTTCAGTAAATTGCAAATG 59.797 34.615 1.71 0.00 0.00 2.32
3097 3348 6.203338 CACAGCCTTTTCAGTAAATTGCAAAT 59.797 34.615 1.71 0.00 0.00 2.32
3098 3349 5.523188 CACAGCCTTTTCAGTAAATTGCAAA 59.477 36.000 1.71 0.00 0.00 3.68
3099 3350 5.049167 CACAGCCTTTTCAGTAAATTGCAA 58.951 37.500 0.00 0.00 0.00 4.08
3100 3351 4.501229 CCACAGCCTTTTCAGTAAATTGCA 60.501 41.667 0.00 0.00 0.00 4.08
3101 3352 3.989817 CCACAGCCTTTTCAGTAAATTGC 59.010 43.478 0.00 0.00 0.00 3.56
3102 3353 4.039124 ACCCACAGCCTTTTCAGTAAATTG 59.961 41.667 0.00 0.00 0.00 2.32
3103 3354 4.223144 ACCCACAGCCTTTTCAGTAAATT 58.777 39.130 0.00 0.00 0.00 1.82
3104 3355 3.844640 ACCCACAGCCTTTTCAGTAAAT 58.155 40.909 0.00 0.00 0.00 1.40
3105 3356 3.306472 ACCCACAGCCTTTTCAGTAAA 57.694 42.857 0.00 0.00 0.00 2.01
3106 3357 3.306472 AACCCACAGCCTTTTCAGTAA 57.694 42.857 0.00 0.00 0.00 2.24
3107 3358 3.306472 AAACCCACAGCCTTTTCAGTA 57.694 42.857 0.00 0.00 0.00 2.74
3108 3359 2.159179 AAACCCACAGCCTTTTCAGT 57.841 45.000 0.00 0.00 0.00 3.41
3109 3360 3.541996 AAAAACCCACAGCCTTTTCAG 57.458 42.857 0.00 0.00 0.00 3.02
3126 3377 2.053618 CCCGGCCCATCAACAAAAA 58.946 52.632 0.00 0.00 0.00 1.94
3127 3378 2.578714 GCCCGGCCCATCAACAAAA 61.579 57.895 0.00 0.00 0.00 2.44
3128 3379 2.994417 GCCCGGCCCATCAACAAA 60.994 61.111 0.00 0.00 0.00 2.83
3129 3380 3.521765 AAGCCCGGCCCATCAACAA 62.522 57.895 5.55 0.00 0.00 2.83
3130 3381 3.978193 AAGCCCGGCCCATCAACA 61.978 61.111 5.55 0.00 0.00 3.33
3131 3382 3.451894 CAAGCCCGGCCCATCAAC 61.452 66.667 5.55 0.00 0.00 3.18
3132 3383 4.757355 CCAAGCCCGGCCCATCAA 62.757 66.667 5.55 0.00 0.00 2.57
3158 3409 2.611225 AACAAAGCCCGATGCAAAAA 57.389 40.000 0.00 0.00 44.83 1.94
3159 3410 2.029470 CCTAACAAAGCCCGATGCAAAA 60.029 45.455 0.00 0.00 44.83 2.44
3160 3411 1.543802 CCTAACAAAGCCCGATGCAAA 59.456 47.619 0.00 0.00 44.83 3.68
3161 3412 1.173043 CCTAACAAAGCCCGATGCAA 58.827 50.000 0.00 0.00 44.83 4.08
3162 3413 1.312371 GCCTAACAAAGCCCGATGCA 61.312 55.000 0.00 0.00 44.83 3.96
3163 3414 1.433471 GCCTAACAAAGCCCGATGC 59.567 57.895 0.00 0.00 41.71 3.91
3164 3415 2.106844 GGCCTAACAAAGCCCGATG 58.893 57.895 0.00 0.00 43.76 3.84
3165 3416 4.657952 GGCCTAACAAAGCCCGAT 57.342 55.556 0.00 0.00 43.76 4.18
3181 3432 4.767255 GCCGTGCCTCAGGTCAGG 62.767 72.222 0.00 0.00 36.50 3.86
3182 3433 4.767255 GGCCGTGCCTCAGGTCAG 62.767 72.222 7.58 0.00 46.69 3.51
3203 3454 1.330655 ACACCTAGCCATCTGTCGGG 61.331 60.000 0.00 0.00 0.00 5.14
3204 3455 1.399714 TACACCTAGCCATCTGTCGG 58.600 55.000 0.00 0.00 0.00 4.79
3205 3456 3.821600 ACTATACACCTAGCCATCTGTCG 59.178 47.826 0.00 0.00 0.00 4.35
3206 3457 4.218852 GGACTATACACCTAGCCATCTGTC 59.781 50.000 0.00 0.00 0.00 3.51
3207 3458 4.140900 AGGACTATACACCTAGCCATCTGT 60.141 45.833 0.00 0.00 34.47 3.41
3208 3459 4.411927 AGGACTATACACCTAGCCATCTG 58.588 47.826 0.00 0.00 34.47 2.90
3209 3460 4.750833 AGGACTATACACCTAGCCATCT 57.249 45.455 0.00 0.00 34.47 2.90
3216 3467 7.935755 GTCACATGTACTAGGACTATACACCTA 59.064 40.741 6.66 0.00 37.68 3.08
3217 3468 6.771749 GTCACATGTACTAGGACTATACACCT 59.228 42.308 6.66 0.00 39.95 4.00
3218 3469 6.544931 TGTCACATGTACTAGGACTATACACC 59.455 42.308 6.66 0.00 31.88 4.16
3219 3470 7.563888 TGTCACATGTACTAGGACTATACAC 57.436 40.000 6.66 0.00 31.88 2.90
3220 3471 8.218488 AGATGTCACATGTACTAGGACTATACA 58.782 37.037 6.66 4.48 33.54 2.29
3221 3472 8.508062 CAGATGTCACATGTACTAGGACTATAC 58.492 40.741 6.66 0.00 0.00 1.47
3222 3473 8.218488 ACAGATGTCACATGTACTAGGACTATA 58.782 37.037 6.66 0.00 0.00 1.31
3223 3474 7.063593 ACAGATGTCACATGTACTAGGACTAT 58.936 38.462 6.66 6.43 0.00 2.12
3224 3475 6.424032 ACAGATGTCACATGTACTAGGACTA 58.576 40.000 6.66 0.00 0.00 2.59
3225 3476 5.265191 ACAGATGTCACATGTACTAGGACT 58.735 41.667 6.66 1.55 0.00 3.85
3226 3477 5.584253 ACAGATGTCACATGTACTAGGAC 57.416 43.478 0.00 0.00 0.00 3.85
3227 3478 8.437575 TCTATACAGATGTCACATGTACTAGGA 58.562 37.037 0.00 0.00 32.58 2.94
3228 3479 8.508062 GTCTATACAGATGTCACATGTACTAGG 58.492 40.741 0.00 0.00 32.58 3.02
3229 3480 9.278978 AGTCTATACAGATGTCACATGTACTAG 57.721 37.037 0.00 0.00 32.58 2.57
3230 3481 9.628500 AAGTCTATACAGATGTCACATGTACTA 57.372 33.333 0.00 0.00 32.58 1.82
3231 3482 8.526667 AAGTCTATACAGATGTCACATGTACT 57.473 34.615 0.00 0.00 32.58 2.73
3232 3483 9.239002 GAAAGTCTATACAGATGTCACATGTAC 57.761 37.037 0.00 0.00 32.58 2.90
3233 3484 8.966868 TGAAAGTCTATACAGATGTCACATGTA 58.033 33.333 0.00 0.00 34.17 2.29
3234 3485 7.840931 TGAAAGTCTATACAGATGTCACATGT 58.159 34.615 0.00 0.00 32.09 3.21
3235 3486 8.707938 TTGAAAGTCTATACAGATGTCACATG 57.292 34.615 0.00 0.00 32.09 3.21
3236 3487 8.535335 ACTTGAAAGTCTATACAGATGTCACAT 58.465 33.333 0.00 0.00 32.86 3.21
3237 3488 7.814587 CACTTGAAAGTCTATACAGATGTCACA 59.185 37.037 0.00 0.00 37.08 3.58
3238 3489 7.815068 ACACTTGAAAGTCTATACAGATGTCAC 59.185 37.037 0.00 0.00 37.08 3.67
3239 3490 7.896811 ACACTTGAAAGTCTATACAGATGTCA 58.103 34.615 0.00 0.00 37.08 3.58
3240 3491 8.247562 AGACACTTGAAAGTCTATACAGATGTC 58.752 37.037 0.00 0.00 42.92 3.06
3241 3492 8.128322 AGACACTTGAAAGTCTATACAGATGT 57.872 34.615 0.00 0.00 42.92 3.06
3242 3493 8.465999 AGAGACACTTGAAAGTCTATACAGATG 58.534 37.037 0.00 0.00 44.61 2.90
3243 3494 8.588290 AGAGACACTTGAAAGTCTATACAGAT 57.412 34.615 0.00 0.00 44.61 2.90
3244 3495 8.410673 AAGAGACACTTGAAAGTCTATACAGA 57.589 34.615 0.00 0.00 44.61 3.41
3245 3496 8.519526 AGAAGAGACACTTGAAAGTCTATACAG 58.480 37.037 0.00 0.00 44.61 2.74
3246 3497 8.410673 AGAAGAGACACTTGAAAGTCTATACA 57.589 34.615 0.00 0.00 44.61 2.29
3247 3498 9.699703 AAAGAAGAGACACTTGAAAGTCTATAC 57.300 33.333 0.00 0.00 44.61 1.47
3248 3499 9.698309 CAAAGAAGAGACACTTGAAAGTCTATA 57.302 33.333 0.00 0.00 44.61 1.31
3249 3500 7.659390 CCAAAGAAGAGACACTTGAAAGTCTAT 59.341 37.037 0.00 0.00 44.61 1.98
3250 3501 6.986817 CCAAAGAAGAGACACTTGAAAGTCTA 59.013 38.462 0.00 0.00 44.61 2.59
3252 3503 5.504830 GCCAAAGAAGAGACACTTGAAAGTC 60.505 44.000 0.00 0.00 39.13 3.01
3253 3504 4.336713 GCCAAAGAAGAGACACTTGAAAGT 59.663 41.667 0.00 0.00 39.13 2.66
3254 3505 4.261363 GGCCAAAGAAGAGACACTTGAAAG 60.261 45.833 0.00 0.00 39.13 2.62
3255 3506 3.632145 GGCCAAAGAAGAGACACTTGAAA 59.368 43.478 0.00 0.00 39.13 2.69
3256 3507 3.214328 GGCCAAAGAAGAGACACTTGAA 58.786 45.455 0.00 0.00 39.13 2.69
3257 3508 2.172505 TGGCCAAAGAAGAGACACTTGA 59.827 45.455 0.61 0.00 39.13 3.02
3258 3509 2.291741 GTGGCCAAAGAAGAGACACTTG 59.708 50.000 7.24 0.00 39.13 3.16
3259 3510 2.173569 AGTGGCCAAAGAAGAGACACTT 59.826 45.455 7.24 0.00 42.03 3.16
3260 3511 1.771255 AGTGGCCAAAGAAGAGACACT 59.229 47.619 7.24 0.00 33.30 3.55
3261 3512 2.262423 AGTGGCCAAAGAAGAGACAC 57.738 50.000 7.24 0.00 0.00 3.67
3262 3513 2.575532 CAAGTGGCCAAAGAAGAGACA 58.424 47.619 7.24 0.00 0.00 3.41
3263 3514 1.882623 CCAAGTGGCCAAAGAAGAGAC 59.117 52.381 7.24 0.00 0.00 3.36
3264 3515 1.774254 TCCAAGTGGCCAAAGAAGAGA 59.226 47.619 7.24 0.00 34.44 3.10
3265 3516 2.276732 TCCAAGTGGCCAAAGAAGAG 57.723 50.000 7.24 0.00 34.44 2.85
3266 3517 2.091885 ACTTCCAAGTGGCCAAAGAAGA 60.092 45.455 28.45 13.65 37.98 2.87
3267 3518 2.310538 ACTTCCAAGTGGCCAAAGAAG 58.689 47.619 23.56 23.56 37.98 2.85
3268 3519 2.452600 ACTTCCAAGTGGCCAAAGAA 57.547 45.000 18.81 12.86 37.98 2.52
3279 3530 4.130118 ACTCTAACTTGTGCACTTCCAAG 58.870 43.478 19.41 15.15 42.91 3.61
3280 3531 4.150897 ACTCTAACTTGTGCACTTCCAA 57.849 40.909 19.41 2.61 0.00 3.53
3281 3532 3.838244 ACTCTAACTTGTGCACTTCCA 57.162 42.857 19.41 0.00 0.00 3.53
3282 3533 3.304057 GCAACTCTAACTTGTGCACTTCC 60.304 47.826 19.41 0.00 0.00 3.46
3283 3534 3.312421 TGCAACTCTAACTTGTGCACTTC 59.688 43.478 19.41 0.00 0.00 3.01
3284 3535 3.278574 TGCAACTCTAACTTGTGCACTT 58.721 40.909 19.41 6.73 0.00 3.16
3285 3536 2.874701 CTGCAACTCTAACTTGTGCACT 59.125 45.455 19.41 0.00 0.00 4.40
3286 3537 2.603173 GCTGCAACTCTAACTTGTGCAC 60.603 50.000 10.75 10.75 0.00 4.57
3287 3538 1.603802 GCTGCAACTCTAACTTGTGCA 59.396 47.619 0.00 0.00 0.00 4.57
3288 3539 1.068954 GGCTGCAACTCTAACTTGTGC 60.069 52.381 0.50 0.00 0.00 4.57
3289 3540 1.195448 CGGCTGCAACTCTAACTTGTG 59.805 52.381 0.50 0.00 0.00 3.33
3290 3541 1.070134 TCGGCTGCAACTCTAACTTGT 59.930 47.619 0.50 0.00 0.00 3.16
3291 3542 1.795768 TCGGCTGCAACTCTAACTTG 58.204 50.000 0.50 0.00 0.00 3.16
3292 3543 2.143925 GTTCGGCTGCAACTCTAACTT 58.856 47.619 0.50 0.00 0.00 2.66
3293 3544 1.608283 GGTTCGGCTGCAACTCTAACT 60.608 52.381 0.50 0.00 0.00 2.24
3294 3545 0.796927 GGTTCGGCTGCAACTCTAAC 59.203 55.000 0.50 0.00 0.00 2.34
3295 3546 0.685097 AGGTTCGGCTGCAACTCTAA 59.315 50.000 0.50 0.00 0.00 2.10
3296 3547 0.685097 AAGGTTCGGCTGCAACTCTA 59.315 50.000 0.50 0.00 0.00 2.43
3297 3548 0.603975 GAAGGTTCGGCTGCAACTCT 60.604 55.000 0.50 0.00 0.00 3.24
3298 3549 0.603975 AGAAGGTTCGGCTGCAACTC 60.604 55.000 0.50 0.00 0.00 3.01
3299 3550 0.685097 TAGAAGGTTCGGCTGCAACT 59.315 50.000 0.50 0.00 0.00 3.16
3300 3551 1.739067 ATAGAAGGTTCGGCTGCAAC 58.261 50.000 0.50 0.00 0.00 4.17
3301 3552 3.838244 ATATAGAAGGTTCGGCTGCAA 57.162 42.857 0.50 0.00 0.00 4.08
3302 3553 3.466836 CAATATAGAAGGTTCGGCTGCA 58.533 45.455 0.50 0.00 0.00 4.41
3303 3554 2.224314 GCAATATAGAAGGTTCGGCTGC 59.776 50.000 0.00 0.00 0.00 5.25
3304 3555 2.808543 GGCAATATAGAAGGTTCGGCTG 59.191 50.000 0.00 0.00 0.00 4.85
3305 3556 2.224548 GGGCAATATAGAAGGTTCGGCT 60.225 50.000 0.00 0.00 0.00 5.52
3306 3557 2.152016 GGGCAATATAGAAGGTTCGGC 58.848 52.381 0.00 0.00 0.00 5.54
3307 3558 3.403038 CAGGGCAATATAGAAGGTTCGG 58.597 50.000 0.00 0.00 0.00 4.30
3308 3559 2.808543 GCAGGGCAATATAGAAGGTTCG 59.191 50.000 0.00 0.00 0.00 3.95
3309 3560 3.565902 GTGCAGGGCAATATAGAAGGTTC 59.434 47.826 0.00 0.00 41.47 3.62
3310 3561 3.555966 GTGCAGGGCAATATAGAAGGTT 58.444 45.455 0.00 0.00 41.47 3.50
3311 3562 2.158608 GGTGCAGGGCAATATAGAAGGT 60.159 50.000 0.00 0.00 41.47 3.50
3312 3563 2.508526 GGTGCAGGGCAATATAGAAGG 58.491 52.381 0.00 0.00 41.47 3.46
3313 3564 2.146342 CGGTGCAGGGCAATATAGAAG 58.854 52.381 0.00 0.00 41.47 2.85
3314 3565 1.765904 TCGGTGCAGGGCAATATAGAA 59.234 47.619 0.00 0.00 41.47 2.10
3315 3566 1.419381 TCGGTGCAGGGCAATATAGA 58.581 50.000 0.00 0.00 41.47 1.98
3316 3567 2.079158 CATCGGTGCAGGGCAATATAG 58.921 52.381 0.00 0.00 41.47 1.31
3317 3568 1.271325 CCATCGGTGCAGGGCAATATA 60.271 52.381 0.00 0.00 41.47 0.86
3318 3569 0.538057 CCATCGGTGCAGGGCAATAT 60.538 55.000 0.00 0.00 41.47 1.28
3319 3570 1.152984 CCATCGGTGCAGGGCAATA 60.153 57.895 0.00 0.00 41.47 1.90
3320 3571 2.440796 CCATCGGTGCAGGGCAAT 60.441 61.111 0.00 0.00 41.47 3.56
3324 3575 4.864334 GAGGCCATCGGTGCAGGG 62.864 72.222 5.01 0.00 0.00 4.45
3333 3584 1.065928 CGGTCACTACGAGGCCATC 59.934 63.158 5.01 0.00 0.00 3.51
3334 3585 2.423898 CCGGTCACTACGAGGCCAT 61.424 63.158 5.01 0.00 0.00 4.40
3335 3586 3.066190 CCGGTCACTACGAGGCCA 61.066 66.667 5.01 0.00 0.00 5.36
3336 3587 3.061260 GACCGGTCACTACGAGGCC 62.061 68.421 29.75 0.00 0.00 5.19
3337 3588 1.870055 TTGACCGGTCACTACGAGGC 61.870 60.000 36.40 6.19 39.66 4.70
3338 3589 0.599558 TTTGACCGGTCACTACGAGG 59.400 55.000 36.40 0.00 39.66 4.63
3339 3590 2.427232 TTTTGACCGGTCACTACGAG 57.573 50.000 36.40 0.00 39.66 4.18
3340 3591 2.886862 TTTTTGACCGGTCACTACGA 57.113 45.000 36.40 19.37 39.66 3.43
3362 3613 0.252696 AGAGGTATGGCTGGGTCACA 60.253 55.000 0.00 0.00 0.00 3.58
3363 3614 0.466124 GAGAGGTATGGCTGGGTCAC 59.534 60.000 0.00 0.00 0.00 3.67
3364 3615 0.042581 TGAGAGGTATGGCTGGGTCA 59.957 55.000 0.00 0.00 0.00 4.02
3365 3616 1.428869 ATGAGAGGTATGGCTGGGTC 58.571 55.000 0.00 0.00 0.00 4.46
3366 3617 2.795291 TATGAGAGGTATGGCTGGGT 57.205 50.000 0.00 0.00 0.00 4.51
3367 3618 3.307975 CCAATATGAGAGGTATGGCTGGG 60.308 52.174 0.00 0.00 0.00 4.45
3368 3619 3.328931 ACCAATATGAGAGGTATGGCTGG 59.671 47.826 0.00 0.00 32.92 4.85
3369 3620 4.285517 AGACCAATATGAGAGGTATGGCTG 59.714 45.833 0.00 0.00 35.36 4.85
3370 3621 4.497516 AGACCAATATGAGAGGTATGGCT 58.502 43.478 0.00 0.00 35.36 4.75
3371 3622 4.899352 AGACCAATATGAGAGGTATGGC 57.101 45.455 0.00 0.00 35.36 4.40
3372 3623 6.267699 TGTGTAGACCAATATGAGAGGTATGG 59.732 42.308 0.00 0.00 35.36 2.74
3373 3624 7.290110 TGTGTAGACCAATATGAGAGGTATG 57.710 40.000 0.00 0.00 35.36 2.39
3374 3625 8.370940 CAATGTGTAGACCAATATGAGAGGTAT 58.629 37.037 0.00 0.00 35.36 2.73
3375 3626 7.202001 CCAATGTGTAGACCAATATGAGAGGTA 60.202 40.741 0.00 0.00 35.36 3.08
3376 3627 6.408548 CCAATGTGTAGACCAATATGAGAGGT 60.409 42.308 0.00 0.00 38.63 3.85
3377 3628 5.994054 CCAATGTGTAGACCAATATGAGAGG 59.006 44.000 0.00 0.00 0.00 3.69
3378 3629 6.586344 ACCAATGTGTAGACCAATATGAGAG 58.414 40.000 0.00 0.00 0.00 3.20
3379 3630 6.560003 ACCAATGTGTAGACCAATATGAGA 57.440 37.500 0.00 0.00 0.00 3.27
3380 3631 6.823182 TCAACCAATGTGTAGACCAATATGAG 59.177 38.462 0.00 0.00 0.00 2.90
3381 3632 6.597672 GTCAACCAATGTGTAGACCAATATGA 59.402 38.462 0.00 0.00 0.00 2.15
3382 3633 6.599244 AGTCAACCAATGTGTAGACCAATATG 59.401 38.462 0.00 0.00 0.00 1.78
3383 3634 6.599244 CAGTCAACCAATGTGTAGACCAATAT 59.401 38.462 0.00 0.00 0.00 1.28
3384 3635 5.937540 CAGTCAACCAATGTGTAGACCAATA 59.062 40.000 0.00 0.00 0.00 1.90
3385 3636 4.761739 CAGTCAACCAATGTGTAGACCAAT 59.238 41.667 0.00 0.00 0.00 3.16
3386 3637 4.133820 CAGTCAACCAATGTGTAGACCAA 58.866 43.478 0.00 0.00 0.00 3.67
3387 3638 3.389656 TCAGTCAACCAATGTGTAGACCA 59.610 43.478 0.00 0.00 0.00 4.02
3388 3639 3.746492 GTCAGTCAACCAATGTGTAGACC 59.254 47.826 0.00 0.00 0.00 3.85
3389 3640 4.211374 GTGTCAGTCAACCAATGTGTAGAC 59.789 45.833 0.00 0.00 0.00 2.59
3390 3641 4.377021 GTGTCAGTCAACCAATGTGTAGA 58.623 43.478 0.00 0.00 0.00 2.59
3391 3642 3.498397 GGTGTCAGTCAACCAATGTGTAG 59.502 47.826 0.00 0.00 0.00 2.74
3392 3643 3.472652 GGTGTCAGTCAACCAATGTGTA 58.527 45.455 0.00 0.00 0.00 2.90
3393 3644 2.297701 GGTGTCAGTCAACCAATGTGT 58.702 47.619 0.00 0.00 0.00 3.72
3401 3652 2.354805 GGTATGAGGGGTGTCAGTCAAC 60.355 54.545 0.00 0.00 0.00 3.18
3402 3653 1.906574 GGTATGAGGGGTGTCAGTCAA 59.093 52.381 0.00 0.00 0.00 3.18
3403 3654 1.568504 GGTATGAGGGGTGTCAGTCA 58.431 55.000 0.00 0.00 0.00 3.41
3404 3655 0.831307 GGGTATGAGGGGTGTCAGTC 59.169 60.000 0.00 0.00 0.00 3.51
3405 3656 0.118346 TGGGTATGAGGGGTGTCAGT 59.882 55.000 0.00 0.00 0.00 3.41
3406 3657 0.833287 CTGGGTATGAGGGGTGTCAG 59.167 60.000 0.00 0.00 0.00 3.51
3407 3658 0.118346 ACTGGGTATGAGGGGTGTCA 59.882 55.000 0.00 0.00 0.00 3.58
3408 3659 1.209747 GAACTGGGTATGAGGGGTGTC 59.790 57.143 0.00 0.00 0.00 3.67
3409 3660 1.286248 GAACTGGGTATGAGGGGTGT 58.714 55.000 0.00 0.00 0.00 4.16
3410 3661 1.285280 TGAACTGGGTATGAGGGGTG 58.715 55.000 0.00 0.00 0.00 4.61
3411 3662 2.286935 ATGAACTGGGTATGAGGGGT 57.713 50.000 0.00 0.00 0.00 4.95
3412 3663 3.264450 GGATATGAACTGGGTATGAGGGG 59.736 52.174 0.00 0.00 0.00 4.79
3413 3664 3.055819 CGGATATGAACTGGGTATGAGGG 60.056 52.174 0.00 0.00 0.00 4.30
3414 3665 3.055819 CCGGATATGAACTGGGTATGAGG 60.056 52.174 0.00 0.00 0.00 3.86
3415 3666 3.055819 CCCGGATATGAACTGGGTATGAG 60.056 52.174 0.73 0.00 45.91 2.90
3416 3667 2.903784 CCCGGATATGAACTGGGTATGA 59.096 50.000 0.73 0.00 45.91 2.15
3417 3668 3.334583 CCCGGATATGAACTGGGTATG 57.665 52.381 0.73 0.00 45.91 2.39
3422 3673 1.348064 TAGCCCCGGATATGAACTGG 58.652 55.000 0.73 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.