Multiple sequence alignment - TraesCS2B01G342700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G342700 chr2B 100.000 2309 0 0 1 2309 488867817 488870125 0.000000e+00 4265
1 TraesCS2B01G342700 chr2A 90.088 1695 63 29 1 1655 573368261 573366632 0.000000e+00 2102
2 TraesCS2B01G342700 chr2A 92.391 184 12 2 1783 1966 573366605 573366424 6.330000e-66 261
3 TraesCS2B01G342700 chr2A 96.703 91 3 0 1973 2063 475930546 475930456 3.970000e-33 152
4 TraesCS2B01G342700 chr2A 94.505 91 5 0 1973 2063 718725833 718725923 8.600000e-30 141
5 TraesCS2B01G342700 chr2D 87.820 1757 72 60 1 1663 416860636 416862344 0.000000e+00 1929
6 TraesCS2B01G342700 chr2D 94.915 177 8 1 1783 1959 416862377 416862552 2.260000e-70 276
7 TraesCS2B01G342700 chr7D 89.177 231 9 8 2085 2302 548149750 548149977 8.130000e-70 274
8 TraesCS2B01G342700 chr7D 86.695 233 17 7 2080 2301 637090469 637090240 1.770000e-61 246
9 TraesCS2B01G342700 chr7B 88.841 233 12 9 2080 2301 591375075 591375304 8.130000e-70 274
10 TraesCS2B01G342700 chr7A 87.124 233 16 7 2080 2301 728667357 728667586 3.810000e-63 252
11 TraesCS2B01G342700 chr7A 93.289 149 8 2 2153 2301 728786068 728786214 3.860000e-53 219
12 TraesCS2B01G342700 chr5D 86.695 233 17 7 2080 2301 497213426 497213655 1.770000e-61 246
13 TraesCS2B01G342700 chr5D 86.695 233 17 7 2080 2301 497404625 497404396 1.770000e-61 246
14 TraesCS2B01G342700 chr5D 86.266 233 18 7 2080 2301 497130616 497130845 8.240000e-60 241
15 TraesCS2B01G342700 chr5D 86.266 233 18 7 2080 2301 497437665 497437436 8.240000e-60 241
16 TraesCS2B01G342700 chr1A 97.778 90 2 0 1974 2063 19128769 19128858 3.070000e-34 156
17 TraesCS2B01G342700 chr4A 96.703 91 3 0 1973 2063 609633396 609633486 3.970000e-33 152
18 TraesCS2B01G342700 chr4A 96.667 90 3 0 1974 2063 555557803 555557714 1.430000e-32 150
19 TraesCS2B01G342700 chr6B 95.604 91 3 1 1974 2063 691861244 691861154 6.650000e-31 145
20 TraesCS2B01G342700 chr6B 95.604 91 3 1 1974 2063 692197443 692197533 6.650000e-31 145
21 TraesCS2B01G342700 chr3A 93.684 95 5 1 1974 2067 627995611 627995705 8.600000e-30 141
22 TraesCS2B01G342700 chr5B 91.667 96 8 0 1974 2069 43927811 43927716 1.440000e-27 134


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G342700 chr2B 488867817 488870125 2308 False 4265.0 4265 100.0000 1 2309 1 chr2B.!!$F1 2308
1 TraesCS2B01G342700 chr2A 573366424 573368261 1837 True 1181.5 2102 91.2395 1 1966 2 chr2A.!!$R2 1965
2 TraesCS2B01G342700 chr2D 416860636 416862552 1916 False 1102.5 1929 91.3675 1 1959 2 chr2D.!!$F1 1958

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
745 810 0.03831 TGTTGGGTGTGTGTGTCCAA 59.962 50.0 0.0 0.0 36.98 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2184 2308 0.031178 AGTACGTCACGACCGCTTTT 59.969 50.0 2.91 0.0 0.0 2.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
144 163 0.825840 TCTTTGAACGGGGGCTTTGG 60.826 55.000 0.00 0.00 0.00 3.28
176 195 0.682209 CCCCACTCAATCCAAGGCAG 60.682 60.000 0.00 0.00 0.00 4.85
177 196 1.318158 CCCACTCAATCCAAGGCAGC 61.318 60.000 0.00 0.00 0.00 5.25
178 197 0.609957 CCACTCAATCCAAGGCAGCA 60.610 55.000 0.00 0.00 0.00 4.41
216 256 4.828072 AGAAGAGTGGAGGGAACATAAC 57.172 45.455 0.00 0.00 0.00 1.89
217 257 4.168101 AGAAGAGTGGAGGGAACATAACA 58.832 43.478 0.00 0.00 0.00 2.41
218 258 4.785376 AGAAGAGTGGAGGGAACATAACAT 59.215 41.667 0.00 0.00 0.00 2.71
219 259 5.964477 AGAAGAGTGGAGGGAACATAACATA 59.036 40.000 0.00 0.00 0.00 2.29
220 260 6.443849 AGAAGAGTGGAGGGAACATAACATAA 59.556 38.462 0.00 0.00 0.00 1.90
293 336 1.876156 CCTCTCTTGTTTCTGGCACAC 59.124 52.381 0.00 0.00 0.00 3.82
294 337 2.564771 CTCTCTTGTTTCTGGCACACA 58.435 47.619 0.00 0.00 0.00 3.72
295 338 3.144506 CTCTCTTGTTTCTGGCACACAT 58.855 45.455 0.00 0.00 0.00 3.21
296 339 2.880268 TCTCTTGTTTCTGGCACACATG 59.120 45.455 0.00 0.00 0.00 3.21
400 452 5.276820 GCGATCCAAAGGAAAAACAACAAAG 60.277 40.000 0.00 0.00 34.34 2.77
401 453 6.039616 CGATCCAAAGGAAAAACAACAAAGA 58.960 36.000 0.00 0.00 34.34 2.52
402 454 6.019881 CGATCCAAAGGAAAAACAACAAAGAC 60.020 38.462 0.00 0.00 34.34 3.01
403 455 5.164954 TCCAAAGGAAAAACAACAAAGACG 58.835 37.500 0.00 0.00 0.00 4.18
404 456 5.047943 TCCAAAGGAAAAACAACAAAGACGA 60.048 36.000 0.00 0.00 0.00 4.20
405 457 5.288472 CCAAAGGAAAAACAACAAAGACGAG 59.712 40.000 0.00 0.00 0.00 4.18
406 458 5.890424 AAGGAAAAACAACAAAGACGAGA 57.110 34.783 0.00 0.00 0.00 4.04
503 562 4.719773 TGGCAGGACCATACTGTATTTAGT 59.280 41.667 0.00 0.00 46.36 2.24
512 571 3.729862 ACTGTATTTAGTAGCGCCCTC 57.270 47.619 2.29 0.00 0.00 4.30
513 572 2.034305 ACTGTATTTAGTAGCGCCCTCG 59.966 50.000 2.29 0.00 39.07 4.63
518 577 0.961857 TTAGTAGCGCCCTCGACACA 60.962 55.000 2.29 0.00 38.10 3.72
562 621 3.986006 TGGTCACGCTCACGGTCC 61.986 66.667 0.00 0.00 46.04 4.46
565 624 3.371063 TCACGCTCACGGTCCCTC 61.371 66.667 0.00 0.00 46.04 4.30
626 685 3.576982 CCCTGCATTACGGAAGATACCTA 59.423 47.826 0.00 0.00 0.00 3.08
629 688 3.006537 TGCATTACGGAAGATACCTAGGC 59.993 47.826 9.30 0.00 0.00 3.93
630 689 3.834610 CATTACGGAAGATACCTAGGCG 58.165 50.000 9.30 4.82 0.00 5.52
671 730 7.875041 ACTAGATTTTAGCAGGCTGTATGTATG 59.125 37.037 17.16 1.06 0.00 2.39
672 731 6.595682 AGATTTTAGCAGGCTGTATGTATGT 58.404 36.000 17.16 1.04 0.00 2.29
673 732 7.735917 AGATTTTAGCAGGCTGTATGTATGTA 58.264 34.615 17.16 0.00 0.00 2.29
674 733 8.378565 AGATTTTAGCAGGCTGTATGTATGTAT 58.621 33.333 17.16 0.00 0.00 2.29
675 734 9.653287 GATTTTAGCAGGCTGTATGTATGTATA 57.347 33.333 17.16 0.00 0.00 1.47
676 735 8.827177 TTTTAGCAGGCTGTATGTATGTATAC 57.173 34.615 17.16 0.00 34.78 1.47
677 736 5.060662 AGCAGGCTGTATGTATGTATACG 57.939 43.478 17.16 0.00 36.54 3.06
678 737 4.082190 AGCAGGCTGTATGTATGTATACGG 60.082 45.833 17.16 0.00 41.01 4.02
689 748 1.702182 TGTATACGGCCAATACGGGA 58.298 50.000 16.52 1.73 33.37 5.14
745 810 0.038310 TGTTGGGTGTGTGTGTCCAA 59.962 50.000 0.00 0.00 36.98 3.53
778 845 6.405953 CGTATCTCCCTCTCTTTGAGCTTTAA 60.406 42.308 0.00 0.00 41.35 1.52
902 990 1.136329 AAGGCTCCAAGCTTCCTCCA 61.136 55.000 4.98 0.00 41.99 3.86
903 991 1.377856 GGCTCCAAGCTTCCTCCAC 60.378 63.158 0.00 0.00 41.99 4.02
904 992 1.682257 GCTCCAAGCTTCCTCCACT 59.318 57.895 0.00 0.00 38.45 4.00
905 993 0.676151 GCTCCAAGCTTCCTCCACTG 60.676 60.000 0.00 0.00 38.45 3.66
906 994 0.676151 CTCCAAGCTTCCTCCACTGC 60.676 60.000 0.00 0.00 0.00 4.40
907 995 1.676967 CCAAGCTTCCTCCACTGCC 60.677 63.158 0.00 0.00 0.00 4.85
908 996 1.676967 CAAGCTTCCTCCACTGCCC 60.677 63.158 0.00 0.00 0.00 5.36
968 1056 1.213296 ACCTTGGGTGTCACAACTCT 58.787 50.000 5.12 0.00 32.98 3.24
969 1057 1.141053 ACCTTGGGTGTCACAACTCTC 59.859 52.381 5.12 0.00 32.98 3.20
970 1058 1.417890 CCTTGGGTGTCACAACTCTCT 59.582 52.381 5.12 0.00 0.00 3.10
971 1059 2.548920 CCTTGGGTGTCACAACTCTCTC 60.549 54.545 5.12 0.00 0.00 3.20
972 1060 2.088104 TGGGTGTCACAACTCTCTCT 57.912 50.000 5.12 0.00 0.00 3.10
973 1061 1.964223 TGGGTGTCACAACTCTCTCTC 59.036 52.381 5.12 0.00 0.00 3.20
974 1062 1.964223 GGGTGTCACAACTCTCTCTCA 59.036 52.381 5.12 0.00 0.00 3.27
975 1063 2.288518 GGGTGTCACAACTCTCTCTCAC 60.289 54.545 5.12 0.00 0.00 3.51
988 1105 1.613925 TCTCTCACACACACACTAGCC 59.386 52.381 0.00 0.00 0.00 3.93
995 1112 1.002430 CACACACACTAGCCAGGACAT 59.998 52.381 0.00 0.00 0.00 3.06
1039 1156 1.144936 CTGGCGATCCTTGTCCTCC 59.855 63.158 0.00 0.00 0.00 4.30
1113 1230 2.747686 GTCCTTCTCGCCCCAACA 59.252 61.111 0.00 0.00 0.00 3.33
1354 1472 0.827507 GACTTGAAGGGCCAGCCAAA 60.828 55.000 11.50 0.00 37.98 3.28
1368 1486 3.560882 CCAGCCAAATCTCTCTGTTTCCT 60.561 47.826 0.00 0.00 0.00 3.36
1369 1487 3.688673 CAGCCAAATCTCTCTGTTTCCTC 59.311 47.826 0.00 0.00 0.00 3.71
1375 1493 1.625818 TCTCTCTGTTTCCTCTTGCCC 59.374 52.381 0.00 0.00 0.00 5.36
1396 1514 4.822350 CCCCTCGTTTTCTTCTTCTTCTTT 59.178 41.667 0.00 0.00 0.00 2.52
1587 1711 3.493503 ACGCAACTCAGTTTTACAGTAGC 59.506 43.478 0.00 0.00 0.00 3.58
1592 1716 6.402226 GCAACTCAGTTTTACAGTAGCATACC 60.402 42.308 0.00 0.00 44.47 2.73
1660 1784 1.463214 TCATGGTGAGTGGGTGGGT 60.463 57.895 0.00 0.00 0.00 4.51
1661 1785 1.303561 CATGGTGAGTGGGTGGGTG 60.304 63.158 0.00 0.00 0.00 4.61
1662 1786 3.210012 ATGGTGAGTGGGTGGGTGC 62.210 63.158 0.00 0.00 0.00 5.01
1663 1787 4.660938 GGTGAGTGGGTGGGTGCC 62.661 72.222 0.00 0.00 0.00 5.01
1664 1788 3.570212 GTGAGTGGGTGGGTGCCT 61.570 66.667 0.00 0.00 0.00 4.75
1665 1789 2.776526 TGAGTGGGTGGGTGCCTT 60.777 61.111 0.00 0.00 0.00 4.35
1666 1790 2.282462 GAGTGGGTGGGTGCCTTG 60.282 66.667 0.00 0.00 0.00 3.61
1667 1791 3.868200 GAGTGGGTGGGTGCCTTGG 62.868 68.421 0.00 0.00 0.00 3.61
1668 1792 4.218686 GTGGGTGGGTGCCTTGGT 62.219 66.667 0.00 0.00 0.00 3.67
1669 1793 4.217210 TGGGTGGGTGCCTTGGTG 62.217 66.667 0.00 0.00 0.00 4.17
1670 1794 4.994756 GGGTGGGTGCCTTGGTGG 62.995 72.222 0.00 0.00 39.35 4.61
1671 1795 3.897122 GGTGGGTGCCTTGGTGGA 61.897 66.667 0.00 0.00 38.35 4.02
1672 1796 2.197324 GTGGGTGCCTTGGTGGAA 59.803 61.111 0.00 0.00 38.35 3.53
1673 1797 1.456705 GTGGGTGCCTTGGTGGAAA 60.457 57.895 0.00 0.00 38.35 3.13
1674 1798 1.045911 GTGGGTGCCTTGGTGGAAAA 61.046 55.000 0.00 0.00 38.35 2.29
1675 1799 0.105246 TGGGTGCCTTGGTGGAAAAT 60.105 50.000 0.00 0.00 38.35 1.82
1676 1800 0.321346 GGGTGCCTTGGTGGAAAATG 59.679 55.000 0.00 0.00 38.35 2.32
1677 1801 0.321346 GGTGCCTTGGTGGAAAATGG 59.679 55.000 0.00 0.00 38.35 3.16
1678 1802 0.320683 GTGCCTTGGTGGAAAATGGC 60.321 55.000 0.00 0.00 40.62 4.40
1679 1803 0.762082 TGCCTTGGTGGAAAATGGCA 60.762 50.000 0.00 0.00 46.59 4.92
1680 1804 0.320683 GCCTTGGTGGAAAATGGCAC 60.321 55.000 0.00 0.00 40.04 5.01
1681 1805 0.038343 CCTTGGTGGAAAATGGCACG 60.038 55.000 0.00 0.00 38.35 5.34
1682 1806 0.038343 CTTGGTGGAAAATGGCACGG 60.038 55.000 0.00 0.00 0.00 4.94
1683 1807 0.468214 TTGGTGGAAAATGGCACGGA 60.468 50.000 0.00 0.00 0.00 4.69
1684 1808 0.468214 TGGTGGAAAATGGCACGGAA 60.468 50.000 0.00 0.00 0.00 4.30
1685 1809 0.676736 GGTGGAAAATGGCACGGAAA 59.323 50.000 0.00 0.00 0.00 3.13
1686 1810 1.604438 GGTGGAAAATGGCACGGAAAC 60.604 52.381 0.00 0.00 0.00 2.78
1687 1811 1.339929 GTGGAAAATGGCACGGAAACT 59.660 47.619 0.00 0.00 0.00 2.66
1688 1812 2.035632 TGGAAAATGGCACGGAAACTT 58.964 42.857 0.00 0.00 0.00 2.66
1689 1813 2.035321 TGGAAAATGGCACGGAAACTTC 59.965 45.455 0.00 0.00 0.00 3.01
1690 1814 2.609491 GGAAAATGGCACGGAAACTTCC 60.609 50.000 0.00 0.00 44.05 3.46
1703 1827 1.048601 AACTTCCTGCTCCACTTCGA 58.951 50.000 0.00 0.00 0.00 3.71
1708 1832 1.581954 CTGCTCCACTTCGACGACT 59.418 57.895 0.00 0.00 0.00 4.18
1727 1851 5.241949 ACGACTAGATCACTTCACTTCAAGT 59.758 40.000 0.00 0.00 37.05 3.16
1728 1852 5.797934 CGACTAGATCACTTCACTTCAAGTC 59.202 44.000 0.00 0.00 34.17 3.01
1729 1853 6.348950 CGACTAGATCACTTCACTTCAAGTCT 60.349 42.308 0.00 0.00 34.17 3.24
1730 1854 7.296628 ACTAGATCACTTCACTTCAAGTCTT 57.703 36.000 0.00 0.00 34.17 3.01
1731 1855 7.375053 ACTAGATCACTTCACTTCAAGTCTTC 58.625 38.462 0.00 0.00 34.17 2.87
1732 1856 6.166984 AGATCACTTCACTTCAAGTCTTCA 57.833 37.500 0.00 0.00 34.17 3.02
1733 1857 6.586344 AGATCACTTCACTTCAAGTCTTCAA 58.414 36.000 0.00 0.00 34.17 2.69
1734 1858 6.481644 AGATCACTTCACTTCAAGTCTTCAAC 59.518 38.462 0.00 0.00 34.17 3.18
1735 1859 4.566759 TCACTTCACTTCAAGTCTTCAACG 59.433 41.667 0.00 0.00 34.17 4.10
1736 1860 4.330074 CACTTCACTTCAAGTCTTCAACGT 59.670 41.667 0.00 0.00 34.17 3.99
1737 1861 4.330074 ACTTCACTTCAAGTCTTCAACGTG 59.670 41.667 0.00 0.00 38.55 4.49
1738 1862 3.194861 TCACTTCAAGTCTTCAACGTGG 58.805 45.455 0.00 0.00 37.86 4.94
1739 1863 1.940613 ACTTCAAGTCTTCAACGTGGC 59.059 47.619 0.00 0.00 37.86 5.01
1740 1864 1.264288 CTTCAAGTCTTCAACGTGGCC 59.736 52.381 0.00 0.00 37.86 5.36
1741 1865 0.878523 TCAAGTCTTCAACGTGGCCG 60.879 55.000 0.00 0.00 37.86 6.13
1742 1866 1.597027 AAGTCTTCAACGTGGCCGG 60.597 57.895 0.00 0.00 38.78 6.13
1743 1867 2.280592 GTCTTCAACGTGGCCGGT 60.281 61.111 1.90 0.00 38.78 5.28
1748 1872 3.041940 CAACGTGGCCGGTGTCTC 61.042 66.667 1.90 0.00 46.65 3.36
1749 1873 3.542676 AACGTGGCCGGTGTCTCA 61.543 61.111 1.90 0.00 38.78 3.27
1750 1874 3.096633 AACGTGGCCGGTGTCTCAA 62.097 57.895 1.90 0.00 38.78 3.02
1751 1875 2.738521 CGTGGCCGGTGTCTCAAG 60.739 66.667 1.90 0.00 0.00 3.02
1752 1876 2.358737 GTGGCCGGTGTCTCAAGG 60.359 66.667 1.90 0.00 0.00 3.61
1757 1881 4.379243 CGGTGTCTCAAGGCGGCT 62.379 66.667 5.25 5.25 0.00 5.52
1758 1882 2.743928 GGTGTCTCAAGGCGGCTG 60.744 66.667 14.21 7.20 0.00 4.85
1759 1883 2.343758 GTGTCTCAAGGCGGCTGA 59.656 61.111 14.21 11.49 0.00 4.26
1760 1884 1.739562 GTGTCTCAAGGCGGCTGAG 60.740 63.158 23.28 23.28 41.47 3.35
1761 1885 2.817396 GTCTCAAGGCGGCTGAGC 60.817 66.667 23.98 17.93 40.18 4.26
1773 1897 3.710722 CTGAGCCAGGCGAAGGGT 61.711 66.667 5.55 0.00 40.09 4.34
1775 1899 4.475135 GAGCCAGGCGAAGGGTCC 62.475 72.222 5.55 0.00 45.55 4.46
1779 1903 3.072468 CAGGCGAAGGGTCCGGTA 61.072 66.667 0.00 0.00 0.00 4.02
1780 1904 3.073101 AGGCGAAGGGTCCGGTAC 61.073 66.667 0.00 0.00 0.00 3.34
1781 1905 3.073101 GGCGAAGGGTCCGGTACT 61.073 66.667 0.00 0.00 0.00 2.73
1782 1906 2.183555 GCGAAGGGTCCGGTACTG 59.816 66.667 0.00 0.00 0.00 2.74
1783 1907 2.890371 CGAAGGGTCCGGTACTGG 59.110 66.667 15.21 15.21 0.00 4.00
1784 1908 2.718073 CGAAGGGTCCGGTACTGGG 61.718 68.421 20.89 8.94 0.00 4.45
1785 1909 2.285144 AAGGGTCCGGTACTGGGG 60.285 66.667 20.89 6.36 0.00 4.96
1786 1910 2.810488 GAAGGGTCCGGTACTGGGGA 62.810 65.000 20.89 8.68 0.00 4.81
1917 2041 1.090052 AATCGAACAGCTTAGCCGGC 61.090 55.000 21.89 21.89 0.00 6.13
1935 2059 4.373116 GGGCCGAAGACGAGCACA 62.373 66.667 0.00 0.00 42.66 4.57
1966 2090 4.039703 CGCTGCGTGCTACTAGTATTTAA 58.960 43.478 14.93 0.00 40.11 1.52
1967 2091 4.501559 CGCTGCGTGCTACTAGTATTTAAA 59.498 41.667 14.93 0.00 40.11 1.52
1968 2092 5.175126 CGCTGCGTGCTACTAGTATTTAAAT 59.825 40.000 14.93 5.89 40.11 1.40
1969 2093 6.292168 CGCTGCGTGCTACTAGTATTTAAATT 60.292 38.462 14.93 0.00 40.11 1.82
1970 2094 7.407337 GCTGCGTGCTACTAGTATTTAAATTT 58.593 34.615 5.91 0.00 38.95 1.82
1971 2095 8.545420 GCTGCGTGCTACTAGTATTTAAATTTA 58.455 33.333 5.91 0.00 38.95 1.40
1973 2097 9.590451 TGCGTGCTACTAGTATTTAAATTTAGT 57.410 29.630 20.05 20.05 0.00 2.24
1995 2119 3.740044 TTTTTAGGCAATCTCGCGAAG 57.260 42.857 11.33 4.62 0.00 3.79
2014 2138 6.984740 CGAAGCTTTATTAAACTGCAACAA 57.015 33.333 0.00 0.00 0.00 2.83
2015 2139 7.566858 CGAAGCTTTATTAAACTGCAACAAT 57.433 32.000 0.00 0.00 0.00 2.71
2016 2140 7.439490 CGAAGCTTTATTAAACTGCAACAATG 58.561 34.615 0.00 0.00 0.00 2.82
2017 2141 7.114811 CGAAGCTTTATTAAACTGCAACAATGT 59.885 33.333 0.00 0.00 0.00 2.71
2018 2142 8.661352 AAGCTTTATTAAACTGCAACAATGTT 57.339 26.923 0.00 0.00 0.00 2.71
2019 2143 8.661352 AGCTTTATTAAACTGCAACAATGTTT 57.339 26.923 0.00 6.31 37.60 2.83
2020 2144 9.757227 AGCTTTATTAAACTGCAACAATGTTTA 57.243 25.926 0.00 4.59 35.77 2.01
2021 2145 9.791838 GCTTTATTAAACTGCAACAATGTTTAC 57.208 29.630 7.51 0.00 36.35 2.01
2025 2149 8.801715 ATTAAACTGCAACAATGTTTACAGAG 57.198 30.769 24.33 8.34 36.35 3.35
2026 2150 6.449635 AAACTGCAACAATGTTTACAGAGA 57.550 33.333 24.33 0.00 32.92 3.10
2027 2151 6.639632 AACTGCAACAATGTTTACAGAGAT 57.360 33.333 24.33 12.24 0.00 2.75
2028 2152 7.744087 AACTGCAACAATGTTTACAGAGATA 57.256 32.000 24.33 0.00 0.00 1.98
2029 2153 7.744087 ACTGCAACAATGTTTACAGAGATAA 57.256 32.000 24.33 0.00 0.00 1.75
2030 2154 8.165239 ACTGCAACAATGTTTACAGAGATAAA 57.835 30.769 24.33 0.00 0.00 1.40
2031 2155 8.629158 ACTGCAACAATGTTTACAGAGATAAAA 58.371 29.630 24.33 0.00 0.00 1.52
2032 2156 9.121517 CTGCAACAATGTTTACAGAGATAAAAG 57.878 33.333 16.66 0.00 0.00 2.27
2033 2157 8.845227 TGCAACAATGTTTACAGAGATAAAAGA 58.155 29.630 0.00 0.00 0.00 2.52
2034 2158 9.846248 GCAACAATGTTTACAGAGATAAAAGAT 57.154 29.630 0.00 0.00 0.00 2.40
2043 2167 8.818141 TTACAGAGATAAAAGATAGATTGCCG 57.182 34.615 0.00 0.00 0.00 5.69
2044 2168 6.226787 ACAGAGATAAAAGATAGATTGCCGG 58.773 40.000 0.00 0.00 0.00 6.13
2045 2169 5.641209 CAGAGATAAAAGATAGATTGCCGGG 59.359 44.000 2.18 0.00 0.00 5.73
2046 2170 4.911390 AGATAAAAGATAGATTGCCGGGG 58.089 43.478 2.18 0.00 0.00 5.73
2047 2171 4.351111 AGATAAAAGATAGATTGCCGGGGT 59.649 41.667 2.18 0.00 0.00 4.95
2048 2172 2.348411 AAAGATAGATTGCCGGGGTG 57.652 50.000 2.18 0.00 0.00 4.61
2049 2173 1.213296 AAGATAGATTGCCGGGGTGT 58.787 50.000 2.18 0.00 0.00 4.16
2050 2174 0.759346 AGATAGATTGCCGGGGTGTC 59.241 55.000 2.18 0.00 0.00 3.67
2051 2175 0.250338 GATAGATTGCCGGGGTGTCC 60.250 60.000 2.18 0.00 0.00 4.02
2052 2176 0.694444 ATAGATTGCCGGGGTGTCCT 60.694 55.000 2.18 0.00 0.00 3.85
2053 2177 0.031917 TAGATTGCCGGGGTGTCCTA 60.032 55.000 2.18 0.00 0.00 2.94
2054 2178 0.912487 AGATTGCCGGGGTGTCCTAA 60.912 55.000 2.18 0.00 0.00 2.69
2055 2179 0.182775 GATTGCCGGGGTGTCCTAAT 59.817 55.000 2.18 0.00 0.00 1.73
2056 2180 0.182775 ATTGCCGGGGTGTCCTAATC 59.817 55.000 2.18 0.00 0.00 1.75
2057 2181 1.202099 TTGCCGGGGTGTCCTAATCA 61.202 55.000 2.18 0.00 0.00 2.57
2058 2182 1.202099 TGCCGGGGTGTCCTAATCAA 61.202 55.000 2.18 0.00 0.00 2.57
2059 2183 0.034863 GCCGGGGTGTCCTAATCAAA 60.035 55.000 2.18 0.00 0.00 2.69
2060 2184 1.746470 CCGGGGTGTCCTAATCAAAC 58.254 55.000 0.00 0.00 0.00 2.93
2061 2185 1.003812 CCGGGGTGTCCTAATCAAACA 59.996 52.381 0.00 0.00 0.00 2.83
2062 2186 2.356741 CCGGGGTGTCCTAATCAAACAT 60.357 50.000 0.00 0.00 0.00 2.71
2063 2187 3.118186 CCGGGGTGTCCTAATCAAACATA 60.118 47.826 0.00 0.00 0.00 2.29
2064 2188 4.519213 CGGGGTGTCCTAATCAAACATAA 58.481 43.478 0.00 0.00 0.00 1.90
2065 2189 4.334481 CGGGGTGTCCTAATCAAACATAAC 59.666 45.833 0.00 0.00 0.00 1.89
2066 2190 4.334481 GGGGTGTCCTAATCAAACATAACG 59.666 45.833 0.00 0.00 0.00 3.18
2067 2191 5.180271 GGGTGTCCTAATCAAACATAACGA 58.820 41.667 0.00 0.00 0.00 3.85
2068 2192 5.064325 GGGTGTCCTAATCAAACATAACGAC 59.936 44.000 0.00 0.00 0.00 4.34
2069 2193 5.640357 GGTGTCCTAATCAAACATAACGACA 59.360 40.000 0.00 0.00 0.00 4.35
2070 2194 6.183360 GGTGTCCTAATCAAACATAACGACAG 60.183 42.308 0.00 0.00 0.00 3.51
2071 2195 6.367969 GTGTCCTAATCAAACATAACGACAGT 59.632 38.462 0.00 0.00 0.00 3.55
2072 2196 7.543172 GTGTCCTAATCAAACATAACGACAGTA 59.457 37.037 0.00 0.00 0.00 2.74
2073 2197 8.255206 TGTCCTAATCAAACATAACGACAGTAT 58.745 33.333 0.00 0.00 0.00 2.12
2074 2198 9.095065 GTCCTAATCAAACATAACGACAGTATT 57.905 33.333 0.00 0.00 0.00 1.89
2075 2199 9.661563 TCCTAATCAAACATAACGACAGTATTT 57.338 29.630 0.00 0.00 0.00 1.40
2090 2214 9.709495 ACGACAGTATTTAAATTTAGTACCACA 57.291 29.630 5.91 0.00 0.00 4.17
2091 2215 9.962759 CGACAGTATTTAAATTTAGTACCACAC 57.037 33.333 5.91 0.00 0.00 3.82
2093 2217 8.938906 ACAGTATTTAAATTTAGTACCACACCG 58.061 33.333 5.91 0.00 0.00 4.94
2094 2218 7.906527 CAGTATTTAAATTTAGTACCACACCGC 59.093 37.037 5.91 0.00 0.00 5.68
2095 2219 7.825761 AGTATTTAAATTTAGTACCACACCGCT 59.174 33.333 5.91 0.00 0.00 5.52
2096 2220 6.484818 TTTAAATTTAGTACCACACCGCTC 57.515 37.500 0.00 0.00 0.00 5.03
2097 2221 2.288961 ATTTAGTACCACACCGCTCG 57.711 50.000 0.00 0.00 0.00 5.03
2098 2222 0.961019 TTTAGTACCACACCGCTCGT 59.039 50.000 0.00 0.00 0.00 4.18
2099 2223 0.961019 TTAGTACCACACCGCTCGTT 59.039 50.000 0.00 0.00 0.00 3.85
2100 2224 0.523072 TAGTACCACACCGCTCGTTC 59.477 55.000 0.00 0.00 0.00 3.95
2101 2225 2.084681 GTACCACACCGCTCGTTCG 61.085 63.158 0.00 0.00 0.00 3.95
2109 2233 4.492160 CGCTCGTTCGGCTAGCCA 62.492 66.667 32.47 17.27 32.86 4.75
2110 2234 2.886124 GCTCGTTCGGCTAGCCAC 60.886 66.667 32.47 22.43 35.37 5.01
2111 2235 2.885861 CTCGTTCGGCTAGCCACT 59.114 61.111 32.47 0.00 35.37 4.00
2112 2236 1.215647 CTCGTTCGGCTAGCCACTT 59.784 57.895 32.47 0.00 35.37 3.16
2113 2237 0.802607 CTCGTTCGGCTAGCCACTTC 60.803 60.000 32.47 17.69 35.37 3.01
2114 2238 2.158959 CGTTCGGCTAGCCACTTCG 61.159 63.158 32.47 24.25 35.37 3.79
2115 2239 2.125673 TTCGGCTAGCCACTTCGC 60.126 61.111 32.47 4.65 35.37 4.70
2116 2240 2.646175 TTCGGCTAGCCACTTCGCT 61.646 57.895 32.47 0.00 43.09 4.93
2117 2241 2.835701 TTCGGCTAGCCACTTCGCTG 62.836 60.000 32.47 14.15 40.08 5.18
2118 2242 3.198489 GGCTAGCCACTTCGCTGC 61.198 66.667 29.33 0.00 40.08 5.25
2119 2243 3.198489 GCTAGCCACTTCGCTGCC 61.198 66.667 2.29 0.00 40.08 4.85
2120 2244 2.581354 CTAGCCACTTCGCTGCCT 59.419 61.111 0.00 0.00 40.08 4.75
2121 2245 1.816537 CTAGCCACTTCGCTGCCTA 59.183 57.895 0.00 0.00 40.08 3.93
2122 2246 0.175760 CTAGCCACTTCGCTGCCTAA 59.824 55.000 0.00 0.00 40.08 2.69
2123 2247 0.611200 TAGCCACTTCGCTGCCTAAA 59.389 50.000 0.00 0.00 40.08 1.85
2124 2248 0.035056 AGCCACTTCGCTGCCTAAAT 60.035 50.000 0.00 0.00 37.82 1.40
2125 2249 1.209504 AGCCACTTCGCTGCCTAAATA 59.790 47.619 0.00 0.00 37.82 1.40
2126 2250 2.014128 GCCACTTCGCTGCCTAAATAA 58.986 47.619 0.00 0.00 0.00 1.40
2127 2251 2.223272 GCCACTTCGCTGCCTAAATAAC 60.223 50.000 0.00 0.00 0.00 1.89
2128 2252 2.030457 CCACTTCGCTGCCTAAATAACG 59.970 50.000 0.00 0.00 0.00 3.18
2129 2253 2.927477 CACTTCGCTGCCTAAATAACGA 59.073 45.455 0.00 0.00 0.00 3.85
2130 2254 3.000322 CACTTCGCTGCCTAAATAACGAG 60.000 47.826 0.00 0.00 0.00 4.18
2131 2255 3.119245 ACTTCGCTGCCTAAATAACGAGA 60.119 43.478 0.00 0.00 0.00 4.04
2132 2256 2.805845 TCGCTGCCTAAATAACGAGAC 58.194 47.619 0.00 0.00 0.00 3.36
2133 2257 1.517276 CGCTGCCTAAATAACGAGACG 59.483 52.381 0.00 0.00 0.00 4.18
2134 2258 2.793585 CGCTGCCTAAATAACGAGACGA 60.794 50.000 0.00 0.00 0.00 4.20
2135 2259 3.381949 GCTGCCTAAATAACGAGACGAT 58.618 45.455 0.00 0.00 0.00 3.73
2136 2260 3.182572 GCTGCCTAAATAACGAGACGATG 59.817 47.826 0.00 0.00 0.00 3.84
2137 2261 4.607955 CTGCCTAAATAACGAGACGATGA 58.392 43.478 0.00 0.00 0.00 2.92
2138 2262 5.001237 TGCCTAAATAACGAGACGATGAA 57.999 39.130 0.00 0.00 0.00 2.57
2139 2263 5.041287 TGCCTAAATAACGAGACGATGAAG 58.959 41.667 0.00 0.00 0.00 3.02
2140 2264 4.085004 GCCTAAATAACGAGACGATGAAGC 60.085 45.833 0.00 0.00 0.00 3.86
2141 2265 5.041287 CCTAAATAACGAGACGATGAAGCA 58.959 41.667 0.00 0.00 0.00 3.91
2142 2266 5.692204 CCTAAATAACGAGACGATGAAGCAT 59.308 40.000 0.00 0.00 0.00 3.79
2143 2267 5.395325 AAATAACGAGACGATGAAGCATG 57.605 39.130 0.00 0.00 0.00 4.06
2144 2268 2.370281 AACGAGACGATGAAGCATGT 57.630 45.000 0.00 0.00 0.00 3.21
2145 2269 3.503827 AACGAGACGATGAAGCATGTA 57.496 42.857 0.00 0.00 0.00 2.29
2146 2270 3.717400 ACGAGACGATGAAGCATGTAT 57.283 42.857 0.00 0.00 0.00 2.29
2147 2271 3.633235 ACGAGACGATGAAGCATGTATC 58.367 45.455 0.00 0.00 0.00 2.24
2148 2272 2.654056 CGAGACGATGAAGCATGTATCG 59.346 50.000 16.49 16.49 46.55 2.92
2149 2273 2.398498 AGACGATGAAGCATGTATCGC 58.602 47.619 17.40 12.62 45.43 4.58
2150 2274 2.127251 GACGATGAAGCATGTATCGCA 58.873 47.619 17.40 2.37 45.43 5.10
2151 2275 2.130395 ACGATGAAGCATGTATCGCAG 58.870 47.619 17.40 5.69 45.43 5.18
2152 2276 1.458445 CGATGAAGCATGTATCGCAGG 59.542 52.381 9.56 0.00 37.49 4.85
2158 2282 3.593834 CATGTATCGCAGGCTAGCA 57.406 52.632 18.24 0.00 0.00 3.49
2159 2283 1.143305 CATGTATCGCAGGCTAGCAC 58.857 55.000 18.24 6.06 0.00 4.40
2160 2284 1.043816 ATGTATCGCAGGCTAGCACT 58.956 50.000 18.24 8.50 0.00 4.40
2161 2285 1.687563 TGTATCGCAGGCTAGCACTA 58.312 50.000 18.24 0.00 0.00 2.74
2162 2286 1.609072 TGTATCGCAGGCTAGCACTAG 59.391 52.381 18.24 5.11 36.29 2.57
2173 2297 4.055654 GCACTAGCTATGCTGGCC 57.944 61.111 16.28 0.00 40.85 5.36
2174 2298 1.449353 GCACTAGCTATGCTGGCCT 59.551 57.895 3.32 0.00 40.85 5.19
2175 2299 0.883814 GCACTAGCTATGCTGGCCTG 60.884 60.000 3.32 4.26 40.85 4.85
2176 2300 0.883814 CACTAGCTATGCTGGCCTGC 60.884 60.000 26.46 26.46 40.85 4.85
2177 2301 1.302351 CTAGCTATGCTGGCCTGCC 60.302 63.158 29.35 15.26 40.10 4.85
2178 2302 3.169155 TAGCTATGCTGGCCTGCCG 62.169 63.158 29.35 18.88 40.10 5.69
2179 2303 4.552365 GCTATGCTGGCCTGCCGA 62.552 66.667 29.35 17.05 39.42 5.54
2180 2304 2.280660 CTATGCTGGCCTGCCGAG 60.281 66.667 29.35 21.80 39.42 4.63
2181 2305 3.821636 CTATGCTGGCCTGCCGAGG 62.822 68.421 29.35 14.22 43.19 4.63
2198 2322 4.205584 GCAAAAAGCGGTCGTGAC 57.794 55.556 0.00 0.00 0.00 3.67
2199 2323 1.721133 GCAAAAAGCGGTCGTGACG 60.721 57.895 0.00 0.00 0.00 4.35
2200 2324 1.639534 CAAAAAGCGGTCGTGACGT 59.360 52.632 4.40 0.00 0.00 4.34
2201 2325 0.854062 CAAAAAGCGGTCGTGACGTA 59.146 50.000 4.40 0.00 0.00 3.57
2202 2326 0.854705 AAAAAGCGGTCGTGACGTAC 59.145 50.000 4.40 1.85 0.00 3.67
2203 2327 0.031178 AAAAGCGGTCGTGACGTACT 59.969 50.000 4.40 0.00 0.00 2.73
2204 2328 0.031178 AAAGCGGTCGTGACGTACTT 59.969 50.000 4.40 1.96 0.00 2.24
2205 2329 0.386478 AAGCGGTCGTGACGTACTTC 60.386 55.000 4.40 0.00 0.00 3.01
2206 2330 1.208614 GCGGTCGTGACGTACTTCT 59.791 57.895 4.40 0.00 0.00 2.85
2207 2331 1.063951 GCGGTCGTGACGTACTTCTG 61.064 60.000 4.40 0.00 0.00 3.02
2208 2332 0.453950 CGGTCGTGACGTACTTCTGG 60.454 60.000 4.40 0.00 0.00 3.86
2209 2333 0.731855 GGTCGTGACGTACTTCTGGC 60.732 60.000 4.40 0.00 0.00 4.85
2210 2334 0.731855 GTCGTGACGTACTTCTGGCC 60.732 60.000 4.40 0.00 0.00 5.36
2211 2335 1.800315 CGTGACGTACTTCTGGCCG 60.800 63.158 0.00 0.00 0.00 6.13
2212 2336 1.445582 GTGACGTACTTCTGGCCGG 60.446 63.158 4.71 4.71 0.00 6.13
2213 2337 2.183555 GACGTACTTCTGGCCGGG 59.816 66.667 12.87 0.00 0.00 5.73
2214 2338 4.078516 ACGTACTTCTGGCCGGGC 62.079 66.667 23.42 23.42 0.00 6.13
2215 2339 3.771160 CGTACTTCTGGCCGGGCT 61.771 66.667 29.87 11.02 0.00 5.19
2216 2340 2.669240 GTACTTCTGGCCGGGCTT 59.331 61.111 29.87 10.43 0.00 4.35
2217 2341 1.745489 GTACTTCTGGCCGGGCTTG 60.745 63.158 29.87 20.91 0.00 4.01
2218 2342 2.966732 TACTTCTGGCCGGGCTTGG 61.967 63.158 29.87 18.29 0.00 3.61
2236 2360 2.044946 CCCAGCAGGCCTGTTACC 60.045 66.667 32.81 16.86 40.06 2.85
2237 2361 2.044946 CCAGCAGGCCTGTTACCC 60.045 66.667 32.81 16.47 40.06 3.69
2238 2362 2.606587 CCAGCAGGCCTGTTACCCT 61.607 63.158 32.81 18.54 40.06 4.34
2239 2363 1.271840 CCAGCAGGCCTGTTACCCTA 61.272 60.000 32.81 0.00 40.06 3.53
2240 2364 0.179000 CAGCAGGCCTGTTACCCTAG 59.821 60.000 32.81 11.17 36.79 3.02
2241 2365 0.983378 AGCAGGCCTGTTACCCTAGG 60.983 60.000 32.81 0.06 37.14 3.02
2242 2366 1.272554 GCAGGCCTGTTACCCTAGGT 61.273 60.000 32.81 0.00 40.16 3.08
2243 2367 0.831307 CAGGCCTGTTACCCTAGGTC 59.169 60.000 25.53 0.00 38.99 3.85
2244 2368 0.686769 AGGCCTGTTACCCTAGGTCG 60.687 60.000 3.11 0.00 43.42 4.79
2245 2369 1.143401 GCCTGTTACCCTAGGTCGC 59.857 63.158 8.29 0.00 37.09 5.19
2246 2370 1.328430 GCCTGTTACCCTAGGTCGCT 61.328 60.000 8.29 0.00 37.09 4.93
2247 2371 0.460311 CCTGTTACCCTAGGTCGCTG 59.540 60.000 8.29 0.00 37.09 5.18
2248 2372 1.183549 CTGTTACCCTAGGTCGCTGT 58.816 55.000 8.29 0.03 37.09 4.40
2249 2373 1.549170 CTGTTACCCTAGGTCGCTGTT 59.451 52.381 8.29 0.00 37.09 3.16
2250 2374 2.756760 CTGTTACCCTAGGTCGCTGTTA 59.243 50.000 8.29 0.00 37.09 2.41
2251 2375 3.164268 TGTTACCCTAGGTCGCTGTTAA 58.836 45.455 8.29 0.00 37.09 2.01
2252 2376 3.056607 TGTTACCCTAGGTCGCTGTTAAC 60.057 47.826 8.29 0.00 37.09 2.01
2253 2377 1.934410 ACCCTAGGTCGCTGTTAACT 58.066 50.000 8.29 0.00 0.00 2.24
2254 2378 1.823610 ACCCTAGGTCGCTGTTAACTC 59.176 52.381 8.29 0.00 0.00 3.01
2255 2379 1.202268 CCCTAGGTCGCTGTTAACTCG 60.202 57.143 8.29 10.36 0.00 4.18
2256 2380 1.471684 CCTAGGTCGCTGTTAACTCGT 59.528 52.381 16.29 4.92 0.00 4.18
2257 2381 2.516923 CTAGGTCGCTGTTAACTCGTG 58.483 52.381 16.29 10.32 0.00 4.35
2258 2382 0.666577 AGGTCGCTGTTAACTCGTGC 60.667 55.000 16.29 10.43 0.00 5.34
2259 2383 0.942410 GGTCGCTGTTAACTCGTGCA 60.942 55.000 16.29 0.00 0.00 4.57
2260 2384 1.068474 GTCGCTGTTAACTCGTGCAT 58.932 50.000 16.29 0.00 0.00 3.96
2261 2385 1.067693 TCGCTGTTAACTCGTGCATG 58.932 50.000 16.29 0.00 0.00 4.06
2262 2386 0.790207 CGCTGTTAACTCGTGCATGT 59.210 50.000 7.22 0.00 0.00 3.21
2263 2387 1.194547 CGCTGTTAACTCGTGCATGTT 59.805 47.619 7.22 6.85 0.00 2.71
2264 2388 2.574322 GCTGTTAACTCGTGCATGTTG 58.426 47.619 7.22 3.12 0.00 3.33
2265 2389 2.665519 GCTGTTAACTCGTGCATGTTGG 60.666 50.000 7.22 0.64 0.00 3.77
2266 2390 1.876799 TGTTAACTCGTGCATGTTGGG 59.123 47.619 7.22 0.00 0.00 4.12
2267 2391 1.199097 GTTAACTCGTGCATGTTGGGG 59.801 52.381 5.68 0.00 0.00 4.96
2268 2392 0.322098 TAACTCGTGCATGTTGGGGG 60.322 55.000 5.68 0.00 0.00 5.40
2269 2393 3.443045 CTCGTGCATGTTGGGGGC 61.443 66.667 5.68 0.00 0.00 5.80
2272 2396 2.921972 GTGCATGTTGGGGGCCAA 60.922 61.111 4.39 0.00 41.69 4.52
2273 2397 2.604079 TGCATGTTGGGGGCCAAG 60.604 61.111 4.39 0.00 44.82 3.61
2274 2398 2.283821 GCATGTTGGGGGCCAAGA 60.284 61.111 4.39 0.00 44.82 3.02
2275 2399 1.912763 GCATGTTGGGGGCCAAGAA 60.913 57.895 4.39 0.00 44.82 2.52
2276 2400 1.891722 GCATGTTGGGGGCCAAGAAG 61.892 60.000 4.39 0.00 44.82 2.85
2277 2401 0.542702 CATGTTGGGGGCCAAGAAGT 60.543 55.000 4.39 0.00 44.82 3.01
2278 2402 0.542702 ATGTTGGGGGCCAAGAAGTG 60.543 55.000 4.39 0.00 44.82 3.16
2279 2403 2.203625 TTGGGGGCCAAGAAGTGC 60.204 61.111 4.39 0.00 38.75 4.40
2280 2404 4.659172 TGGGGGCCAAGAAGTGCG 62.659 66.667 4.39 0.00 0.00 5.34
2282 2406 4.344865 GGGGCCAAGAAGTGCGGA 62.345 66.667 4.39 0.00 0.00 5.54
2283 2407 2.747855 GGGCCAAGAAGTGCGGAG 60.748 66.667 4.39 0.00 0.00 4.63
2297 2421 3.396491 CGGAGCGTCGTTAGTCTTT 57.604 52.632 0.00 0.00 0.00 2.52
2298 2422 1.694639 CGGAGCGTCGTTAGTCTTTT 58.305 50.000 0.00 0.00 0.00 2.27
2299 2423 2.056577 CGGAGCGTCGTTAGTCTTTTT 58.943 47.619 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
144 163 2.200092 TGGGGCCAGTCCAAAACC 59.800 61.111 4.39 0.00 36.21 3.27
216 256 4.256090 GCTGGCCGCCGCTTTATG 62.256 66.667 16.04 0.00 34.44 1.90
293 336 3.214123 CACGGCTCCCCATGCATG 61.214 66.667 20.19 20.19 0.00 4.06
361 413 1.670949 ATCGCAGATCACAGGCTCGT 61.671 55.000 0.00 0.00 45.12 4.18
364 416 1.332889 TGGATCGCAGATCACAGGCT 61.333 55.000 16.61 0.00 45.12 4.58
369 421 2.315925 TCCTTTGGATCGCAGATCAC 57.684 50.000 16.61 9.17 45.12 3.06
400 452 2.755655 TGGAGACCATCTTCTTCTCGTC 59.244 50.000 0.00 0.00 37.28 4.20
401 453 2.494073 GTGGAGACCATCTTCTTCTCGT 59.506 50.000 0.00 0.00 37.28 4.18
402 454 2.757868 AGTGGAGACCATCTTCTTCTCG 59.242 50.000 0.00 0.00 37.28 4.04
403 455 4.023291 AGAGTGGAGACCATCTTCTTCTC 58.977 47.826 0.00 0.00 35.28 2.87
404 456 4.059773 AGAGTGGAGACCATCTTCTTCT 57.940 45.455 0.00 0.00 35.28 2.85
405 457 4.707448 TGTAGAGTGGAGACCATCTTCTTC 59.293 45.833 0.00 0.00 35.28 2.87
406 458 4.678256 TGTAGAGTGGAGACCATCTTCTT 58.322 43.478 0.00 0.00 35.28 2.52
452 504 6.152379 GGAAAACAAAAATGCTCTCTACTGG 58.848 40.000 0.00 0.00 0.00 4.00
495 554 2.033801 TGTCGAGGGCGCTACTAAATAC 59.966 50.000 7.64 3.74 37.46 1.89
496 555 2.033801 GTGTCGAGGGCGCTACTAAATA 59.966 50.000 7.64 0.00 37.46 1.40
503 562 0.249953 TTTTTGTGTCGAGGGCGCTA 60.250 50.000 7.64 0.00 37.46 4.26
512 571 3.420839 AAAGCAGAGGTTTTTGTGTCG 57.579 42.857 0.00 0.00 28.33 4.35
553 612 2.837371 GAAAGGCGAGGGACCGTGAG 62.837 65.000 0.00 0.00 0.00 3.51
559 618 2.077627 GAAAAGAGAAAGGCGAGGGAC 58.922 52.381 0.00 0.00 0.00 4.46
562 621 2.481952 CACAGAAAAGAGAAAGGCGAGG 59.518 50.000 0.00 0.00 0.00 4.63
565 624 3.499918 ACATCACAGAAAAGAGAAAGGCG 59.500 43.478 0.00 0.00 0.00 5.52
630 689 2.666596 CTAGTGGGGGCGAATCAGGC 62.667 65.000 0.00 0.00 0.00 4.85
671 730 3.323751 AATCCCGTATTGGCCGTATAC 57.676 47.619 14.74 14.74 35.87 1.47
672 731 4.771577 TCTAAATCCCGTATTGGCCGTATA 59.228 41.667 0.00 0.00 35.87 1.47
673 732 2.943036 AAATCCCGTATTGGCCGTAT 57.057 45.000 0.00 0.00 35.87 3.06
674 733 2.964464 TCTAAATCCCGTATTGGCCGTA 59.036 45.455 0.00 0.00 35.87 4.02
675 734 1.764134 TCTAAATCCCGTATTGGCCGT 59.236 47.619 0.00 0.00 35.87 5.68
676 735 2.536761 TCTAAATCCCGTATTGGCCG 57.463 50.000 0.00 0.00 35.87 6.13
677 736 2.488153 GCATCTAAATCCCGTATTGGCC 59.512 50.000 0.00 0.00 35.87 5.36
678 737 3.146066 TGCATCTAAATCCCGTATTGGC 58.854 45.455 0.00 0.00 35.87 4.52
679 738 4.320494 GCTTGCATCTAAATCCCGTATTGG 60.320 45.833 0.00 0.00 37.55 3.16
680 739 4.275689 TGCTTGCATCTAAATCCCGTATTG 59.724 41.667 0.00 0.00 0.00 1.90
681 740 4.460263 TGCTTGCATCTAAATCCCGTATT 58.540 39.130 0.00 0.00 0.00 1.89
682 741 4.085357 TGCTTGCATCTAAATCCCGTAT 57.915 40.909 0.00 0.00 0.00 3.06
683 742 3.552132 TGCTTGCATCTAAATCCCGTA 57.448 42.857 0.00 0.00 0.00 4.02
689 748 6.095377 GCTTTACACTTGCTTGCATCTAAAT 58.905 36.000 0.00 0.00 0.00 1.40
745 810 2.560542 GAGAGGGAGATACGATGTGCAT 59.439 50.000 0.00 0.00 0.00 3.96
778 845 5.522641 AGATCTTGGTCCAAAGGCATAAAT 58.477 37.500 5.64 0.00 0.00 1.40
863 951 1.809547 TGGACCATGTTATTGCGTGTG 59.190 47.619 0.00 0.00 0.00 3.82
902 990 2.247358 CACAAGTTTTATGGGGGCAGT 58.753 47.619 0.00 0.00 0.00 4.40
903 991 1.066929 GCACAAGTTTTATGGGGGCAG 60.067 52.381 0.00 0.00 0.00 4.85
904 992 0.972883 GCACAAGTTTTATGGGGGCA 59.027 50.000 0.00 0.00 0.00 5.36
905 993 0.108851 CGCACAAGTTTTATGGGGGC 60.109 55.000 0.00 0.00 0.00 5.80
906 994 0.108851 GCGCACAAGTTTTATGGGGG 60.109 55.000 0.30 0.00 37.22 5.40
907 995 0.108851 GGCGCACAAGTTTTATGGGG 60.109 55.000 10.83 0.00 0.00 4.96
908 996 0.455972 CGGCGCACAAGTTTTATGGG 60.456 55.000 10.83 0.00 0.00 4.00
968 1056 1.613925 GGCTAGTGTGTGTGTGAGAGA 59.386 52.381 0.00 0.00 0.00 3.10
969 1057 1.341209 TGGCTAGTGTGTGTGTGAGAG 59.659 52.381 0.00 0.00 0.00 3.20
970 1058 1.341209 CTGGCTAGTGTGTGTGTGAGA 59.659 52.381 0.00 0.00 0.00 3.27
971 1059 1.606480 CCTGGCTAGTGTGTGTGTGAG 60.606 57.143 0.00 0.00 0.00 3.51
972 1060 0.392706 CCTGGCTAGTGTGTGTGTGA 59.607 55.000 0.00 0.00 0.00 3.58
973 1061 0.392706 TCCTGGCTAGTGTGTGTGTG 59.607 55.000 0.00 0.00 0.00 3.82
974 1062 0.393077 GTCCTGGCTAGTGTGTGTGT 59.607 55.000 0.00 0.00 0.00 3.72
975 1063 0.392706 TGTCCTGGCTAGTGTGTGTG 59.607 55.000 0.00 0.00 0.00 3.82
988 1105 3.244146 GGGACTCTCATCATGATGTCCTG 60.244 52.174 30.01 21.04 43.31 3.86
995 1112 1.126488 GCTGGGGACTCTCATCATGA 58.874 55.000 0.00 0.00 0.00 3.07
1354 1472 2.238395 GGGCAAGAGGAAACAGAGAGAT 59.762 50.000 0.00 0.00 0.00 2.75
1368 1486 1.420138 AGAAGAAAACGAGGGGCAAGA 59.580 47.619 0.00 0.00 0.00 3.02
1369 1487 1.897560 AGAAGAAAACGAGGGGCAAG 58.102 50.000 0.00 0.00 0.00 4.01
1375 1493 6.852858 AGAAAGAAGAAGAAGAAAACGAGG 57.147 37.500 0.00 0.00 0.00 4.63
1587 1711 8.175716 GGAACTGAACGAATCTTAAAAGGTATG 58.824 37.037 0.00 0.00 0.00 2.39
1592 1716 5.407387 TCGGGAACTGAACGAATCTTAAAAG 59.593 40.000 0.00 0.00 43.00 2.27
1660 1784 2.056985 GCCATTTTCCACCAAGGCA 58.943 52.632 0.00 0.00 41.63 4.75
1661 1785 0.320683 GTGCCATTTTCCACCAAGGC 60.321 55.000 0.00 0.00 42.32 4.35
1662 1786 0.038343 CGTGCCATTTTCCACCAAGG 60.038 55.000 0.00 0.00 39.47 3.61
1663 1787 0.038343 CCGTGCCATTTTCCACCAAG 60.038 55.000 0.00 0.00 0.00 3.61
1664 1788 0.468214 TCCGTGCCATTTTCCACCAA 60.468 50.000 0.00 0.00 0.00 3.67
1665 1789 0.468214 TTCCGTGCCATTTTCCACCA 60.468 50.000 0.00 0.00 0.00 4.17
1666 1790 0.676736 TTTCCGTGCCATTTTCCACC 59.323 50.000 0.00 0.00 0.00 4.61
1667 1791 1.339929 AGTTTCCGTGCCATTTTCCAC 59.660 47.619 0.00 0.00 0.00 4.02
1668 1792 1.698506 AGTTTCCGTGCCATTTTCCA 58.301 45.000 0.00 0.00 0.00 3.53
1669 1793 2.609491 GGAAGTTTCCGTGCCATTTTCC 60.609 50.000 0.00 0.00 37.65 3.13
1670 1794 2.672714 GGAAGTTTCCGTGCCATTTTC 58.327 47.619 0.00 0.00 37.65 2.29
1671 1795 2.812358 GGAAGTTTCCGTGCCATTTT 57.188 45.000 0.00 0.00 37.65 1.82
1682 1806 1.801178 CGAAGTGGAGCAGGAAGTTTC 59.199 52.381 0.00 0.00 0.00 2.78
1683 1807 1.416401 TCGAAGTGGAGCAGGAAGTTT 59.584 47.619 0.00 0.00 0.00 2.66
1684 1808 1.048601 TCGAAGTGGAGCAGGAAGTT 58.951 50.000 0.00 0.00 0.00 2.66
1685 1809 0.318762 GTCGAAGTGGAGCAGGAAGT 59.681 55.000 0.00 0.00 0.00 3.01
1686 1810 0.734253 CGTCGAAGTGGAGCAGGAAG 60.734 60.000 0.00 0.00 0.00 3.46
1687 1811 1.176619 TCGTCGAAGTGGAGCAGGAA 61.177 55.000 0.00 0.00 0.00 3.36
1688 1812 1.602605 TCGTCGAAGTGGAGCAGGA 60.603 57.895 0.00 0.00 0.00 3.86
1689 1813 1.444553 GTCGTCGAAGTGGAGCAGG 60.445 63.158 0.00 0.00 0.00 4.85
1690 1814 0.803117 TAGTCGTCGAAGTGGAGCAG 59.197 55.000 0.00 0.00 0.00 4.24
1703 1827 5.241949 ACTTGAAGTGAAGTGATCTAGTCGT 59.758 40.000 0.00 0.00 34.79 4.34
1708 1832 7.290110 TGAAGACTTGAAGTGAAGTGATCTA 57.710 36.000 0.90 0.00 36.27 1.98
1727 1851 2.280524 CACCGGCCACGTTGAAGA 60.281 61.111 0.00 0.00 34.06 2.87
1728 1852 2.590575 ACACCGGCCACGTTGAAG 60.591 61.111 0.00 0.00 35.92 3.02
1729 1853 2.589442 GACACCGGCCACGTTGAA 60.589 61.111 0.00 0.00 35.92 2.69
1730 1854 3.509137 GAGACACCGGCCACGTTGA 62.509 63.158 0.00 0.00 35.92 3.18
1731 1855 3.041940 GAGACACCGGCCACGTTG 61.042 66.667 0.00 0.00 38.58 4.10
1732 1856 2.989055 CTTGAGACACCGGCCACGTT 62.989 60.000 0.00 0.00 38.78 3.99
1733 1857 3.515316 CTTGAGACACCGGCCACGT 62.515 63.158 0.00 0.00 38.78 4.49
1734 1858 2.738521 CTTGAGACACCGGCCACG 60.739 66.667 0.00 0.00 40.55 4.94
1735 1859 2.358737 CCTTGAGACACCGGCCAC 60.359 66.667 0.00 0.00 0.00 5.01
1736 1860 4.329545 GCCTTGAGACACCGGCCA 62.330 66.667 0.00 0.00 36.56 5.36
1740 1864 4.379243 AGCCGCCTTGAGACACCG 62.379 66.667 0.00 0.00 0.00 4.94
1741 1865 2.743928 CAGCCGCCTTGAGACACC 60.744 66.667 0.00 0.00 0.00 4.16
1742 1866 1.739562 CTCAGCCGCCTTGAGACAC 60.740 63.158 4.02 0.00 43.75 3.67
1743 1867 2.659016 CTCAGCCGCCTTGAGACA 59.341 61.111 4.02 0.00 43.75 3.41
1744 1868 2.817396 GCTCAGCCGCCTTGAGAC 60.817 66.667 12.58 2.31 43.75 3.36
1745 1869 4.087892 GGCTCAGCCGCCTTGAGA 62.088 66.667 0.00 0.00 46.63 3.27
1756 1880 3.672295 GACCCTTCGCCTGGCTCAG 62.672 68.421 17.92 11.74 0.00 3.35
1757 1881 3.706373 GACCCTTCGCCTGGCTCA 61.706 66.667 17.92 0.00 0.00 4.26
1758 1882 4.475135 GGACCCTTCGCCTGGCTC 62.475 72.222 17.92 5.95 0.00 4.70
1762 1886 3.072468 TACCGGACCCTTCGCCTG 61.072 66.667 9.46 0.00 0.00 4.85
1763 1887 3.073101 GTACCGGACCCTTCGCCT 61.073 66.667 9.46 0.00 0.00 5.52
1764 1888 3.073101 AGTACCGGACCCTTCGCC 61.073 66.667 9.46 0.00 0.00 5.54
1765 1889 2.183555 CAGTACCGGACCCTTCGC 59.816 66.667 9.46 0.00 0.00 4.70
1766 1890 2.718073 CCCAGTACCGGACCCTTCG 61.718 68.421 9.46 0.00 0.00 3.79
1767 1891 2.364780 CCCCAGTACCGGACCCTTC 61.365 68.421 9.46 0.00 0.00 3.46
1768 1892 2.285144 CCCCAGTACCGGACCCTT 60.285 66.667 9.46 0.00 0.00 3.95
1769 1893 3.278519 TCCCCAGTACCGGACCCT 61.279 66.667 9.46 0.00 0.00 4.34
1770 1894 3.079478 GTCCCCAGTACCGGACCC 61.079 72.222 9.46 0.00 42.39 4.46
1771 1895 3.455469 CGTCCCCAGTACCGGACC 61.455 72.222 9.46 0.00 44.88 4.46
1772 1896 4.139234 GCGTCCCCAGTACCGGAC 62.139 72.222 9.46 12.34 44.36 4.79
1868 1992 2.946947 GCAGGCAGCCAAGAACTAA 58.053 52.632 15.80 0.00 37.23 2.24
1975 2099 2.159572 GCTTCGCGAGATTGCCTAAAAA 60.160 45.455 9.59 0.00 41.60 1.94
1976 2100 1.396996 GCTTCGCGAGATTGCCTAAAA 59.603 47.619 9.59 0.00 41.60 1.52
1977 2101 1.006832 GCTTCGCGAGATTGCCTAAA 58.993 50.000 9.59 0.00 41.60 1.85
1978 2102 0.175760 AGCTTCGCGAGATTGCCTAA 59.824 50.000 9.59 0.00 41.60 2.69
1979 2103 0.175760 AAGCTTCGCGAGATTGCCTA 59.824 50.000 9.59 0.00 41.60 3.93
1980 2104 0.674895 AAAGCTTCGCGAGATTGCCT 60.675 50.000 9.59 0.00 41.60 4.75
1981 2105 1.006832 TAAAGCTTCGCGAGATTGCC 58.993 50.000 9.59 0.00 41.60 4.52
1982 2106 3.325230 AATAAAGCTTCGCGAGATTGC 57.675 42.857 9.59 12.72 41.60 3.56
1983 2107 6.409185 CAGTTTAATAAAGCTTCGCGAGATTG 59.591 38.462 9.59 2.43 41.60 2.67
1984 2108 6.478588 CAGTTTAATAAAGCTTCGCGAGATT 58.521 36.000 9.59 6.06 41.60 2.40
1985 2109 5.502544 GCAGTTTAATAAAGCTTCGCGAGAT 60.503 40.000 9.59 0.00 41.60 2.75
1986 2110 4.201685 GCAGTTTAATAAAGCTTCGCGAGA 60.202 41.667 9.59 0.00 39.20 4.04
1987 2111 4.022475 GCAGTTTAATAAAGCTTCGCGAG 58.978 43.478 9.59 4.97 0.00 5.03
1988 2112 3.433957 TGCAGTTTAATAAAGCTTCGCGA 59.566 39.130 3.71 3.71 0.00 5.87
1989 2113 3.742786 TGCAGTTTAATAAAGCTTCGCG 58.257 40.909 0.00 0.00 0.00 5.87
1990 2114 4.915085 TGTTGCAGTTTAATAAAGCTTCGC 59.085 37.500 0.00 0.00 0.00 4.70
1991 2115 6.984740 TTGTTGCAGTTTAATAAAGCTTCG 57.015 33.333 0.00 0.00 0.00 3.79
1992 2116 8.298030 ACATTGTTGCAGTTTAATAAAGCTTC 57.702 30.769 0.00 0.00 0.00 3.86
1993 2117 8.661352 AACATTGTTGCAGTTTAATAAAGCTT 57.339 26.923 0.15 0.00 0.00 3.74
1994 2118 8.661352 AAACATTGTTGCAGTTTAATAAAGCT 57.339 26.923 2.13 0.00 34.03 3.74
1995 2119 9.791838 GTAAACATTGTTGCAGTTTAATAAAGC 57.208 29.630 2.13 0.00 38.85 3.51
1999 2123 9.891828 CTCTGTAAACATTGTTGCAGTTTAATA 57.108 29.630 22.59 10.21 40.76 0.98
2000 2124 8.629158 TCTCTGTAAACATTGTTGCAGTTTAAT 58.371 29.630 22.59 3.22 40.76 1.40
2001 2125 7.990917 TCTCTGTAAACATTGTTGCAGTTTAA 58.009 30.769 22.59 10.90 40.76 1.52
2002 2126 7.561021 TCTCTGTAAACATTGTTGCAGTTTA 57.439 32.000 22.59 4.59 40.76 2.01
2003 2127 6.449635 TCTCTGTAAACATTGTTGCAGTTT 57.550 33.333 22.59 6.31 40.76 2.66
2004 2128 6.639632 ATCTCTGTAAACATTGTTGCAGTT 57.360 33.333 22.59 12.92 40.76 3.16
2005 2129 7.744087 TTATCTCTGTAAACATTGTTGCAGT 57.256 32.000 22.59 13.15 40.76 4.40
2006 2130 9.121517 CTTTTATCTCTGTAAACATTGTTGCAG 57.878 33.333 19.84 19.84 41.15 4.41
2007 2131 8.845227 TCTTTTATCTCTGTAAACATTGTTGCA 58.155 29.630 2.13 5.04 0.00 4.08
2008 2132 9.846248 ATCTTTTATCTCTGTAAACATTGTTGC 57.154 29.630 2.13 0.45 0.00 4.17
2017 2141 9.261180 CGGCAATCTATCTTTTATCTCTGTAAA 57.739 33.333 0.00 0.00 0.00 2.01
2018 2142 7.872993 CCGGCAATCTATCTTTTATCTCTGTAA 59.127 37.037 0.00 0.00 0.00 2.41
2019 2143 7.378966 CCGGCAATCTATCTTTTATCTCTGTA 58.621 38.462 0.00 0.00 0.00 2.74
2020 2144 6.226787 CCGGCAATCTATCTTTTATCTCTGT 58.773 40.000 0.00 0.00 0.00 3.41
2021 2145 5.641209 CCCGGCAATCTATCTTTTATCTCTG 59.359 44.000 0.00 0.00 0.00 3.35
2022 2146 5.280215 CCCCGGCAATCTATCTTTTATCTCT 60.280 44.000 0.00 0.00 0.00 3.10
2023 2147 4.938226 CCCCGGCAATCTATCTTTTATCTC 59.062 45.833 0.00 0.00 0.00 2.75
2024 2148 4.351111 ACCCCGGCAATCTATCTTTTATCT 59.649 41.667 0.00 0.00 0.00 1.98
2025 2149 4.455877 CACCCCGGCAATCTATCTTTTATC 59.544 45.833 0.00 0.00 0.00 1.75
2026 2150 4.141251 ACACCCCGGCAATCTATCTTTTAT 60.141 41.667 0.00 0.00 0.00 1.40
2027 2151 3.201266 ACACCCCGGCAATCTATCTTTTA 59.799 43.478 0.00 0.00 0.00 1.52
2028 2152 2.025321 ACACCCCGGCAATCTATCTTTT 60.025 45.455 0.00 0.00 0.00 2.27
2029 2153 1.564348 ACACCCCGGCAATCTATCTTT 59.436 47.619 0.00 0.00 0.00 2.52
2030 2154 1.141053 GACACCCCGGCAATCTATCTT 59.859 52.381 0.00 0.00 0.00 2.40
2031 2155 0.759346 GACACCCCGGCAATCTATCT 59.241 55.000 0.00 0.00 0.00 1.98
2032 2156 0.250338 GGACACCCCGGCAATCTATC 60.250 60.000 0.00 0.00 0.00 2.08
2033 2157 0.694444 AGGACACCCCGGCAATCTAT 60.694 55.000 0.00 0.00 40.87 1.98
2034 2158 0.031917 TAGGACACCCCGGCAATCTA 60.032 55.000 0.00 0.00 40.87 1.98
2035 2159 0.912487 TTAGGACACCCCGGCAATCT 60.912 55.000 0.00 0.00 40.87 2.40
2036 2160 0.182775 ATTAGGACACCCCGGCAATC 59.817 55.000 0.00 0.00 40.87 2.67
2037 2161 0.182775 GATTAGGACACCCCGGCAAT 59.817 55.000 0.00 0.00 40.87 3.56
2038 2162 1.202099 TGATTAGGACACCCCGGCAA 61.202 55.000 0.00 0.00 40.87 4.52
2039 2163 1.202099 TTGATTAGGACACCCCGGCA 61.202 55.000 0.00 0.00 40.87 5.69
2040 2164 0.034863 TTTGATTAGGACACCCCGGC 60.035 55.000 0.00 0.00 40.87 6.13
2041 2165 1.003812 TGTTTGATTAGGACACCCCGG 59.996 52.381 0.00 0.00 40.87 5.73
2042 2166 2.483014 TGTTTGATTAGGACACCCCG 57.517 50.000 0.00 0.00 40.87 5.73
2043 2167 4.334481 CGTTATGTTTGATTAGGACACCCC 59.666 45.833 0.00 0.00 0.00 4.95
2044 2168 5.064325 GTCGTTATGTTTGATTAGGACACCC 59.936 44.000 0.00 0.00 0.00 4.61
2045 2169 5.640357 TGTCGTTATGTTTGATTAGGACACC 59.360 40.000 0.00 0.00 0.00 4.16
2046 2170 6.367969 ACTGTCGTTATGTTTGATTAGGACAC 59.632 38.462 0.00 0.00 0.00 3.67
2047 2171 6.460781 ACTGTCGTTATGTTTGATTAGGACA 58.539 36.000 0.00 0.00 0.00 4.02
2048 2172 6.963049 ACTGTCGTTATGTTTGATTAGGAC 57.037 37.500 0.00 0.00 0.00 3.85
2049 2173 9.661563 AAATACTGTCGTTATGTTTGATTAGGA 57.338 29.630 0.00 0.00 0.00 2.94
2064 2188 9.709495 TGTGGTACTAAATTTAAATACTGTCGT 57.291 29.630 0.01 3.84 0.00 4.34
2065 2189 9.962759 GTGTGGTACTAAATTTAAATACTGTCG 57.037 33.333 0.01 0.00 0.00 4.35
2067 2191 8.938906 CGGTGTGGTACTAAATTTAAATACTGT 58.061 33.333 0.01 3.57 0.00 3.55
2068 2192 7.906527 GCGGTGTGGTACTAAATTTAAATACTG 59.093 37.037 0.01 0.00 0.00 2.74
2069 2193 7.825761 AGCGGTGTGGTACTAAATTTAAATACT 59.174 33.333 0.01 0.00 0.00 2.12
2070 2194 7.977904 AGCGGTGTGGTACTAAATTTAAATAC 58.022 34.615 0.01 5.30 0.00 1.89
2071 2195 7.010367 CGAGCGGTGTGGTACTAAATTTAAATA 59.990 37.037 0.01 0.00 0.00 1.40
2072 2196 6.183360 CGAGCGGTGTGGTACTAAATTTAAAT 60.183 38.462 0.00 0.00 0.00 1.40
2073 2197 5.120519 CGAGCGGTGTGGTACTAAATTTAAA 59.879 40.000 0.00 0.00 0.00 1.52
2074 2198 4.626604 CGAGCGGTGTGGTACTAAATTTAA 59.373 41.667 0.00 0.00 0.00 1.52
2075 2199 4.175516 CGAGCGGTGTGGTACTAAATTTA 58.824 43.478 0.00 0.00 0.00 1.40
2076 2200 2.997986 CGAGCGGTGTGGTACTAAATTT 59.002 45.455 0.00 0.00 0.00 1.82
2077 2201 2.028748 ACGAGCGGTGTGGTACTAAATT 60.029 45.455 0.00 0.00 0.00 1.82
2078 2202 1.547372 ACGAGCGGTGTGGTACTAAAT 59.453 47.619 0.00 0.00 0.00 1.40
2079 2203 0.961019 ACGAGCGGTGTGGTACTAAA 59.039 50.000 0.00 0.00 0.00 1.85
2080 2204 0.961019 AACGAGCGGTGTGGTACTAA 59.039 50.000 0.00 0.00 0.00 2.24
2081 2205 0.523072 GAACGAGCGGTGTGGTACTA 59.477 55.000 0.00 0.00 0.00 1.82
2082 2206 1.288127 GAACGAGCGGTGTGGTACT 59.712 57.895 0.00 0.00 0.00 2.73
2083 2207 2.084681 CGAACGAGCGGTGTGGTAC 61.085 63.158 0.00 0.00 0.00 3.34
2084 2208 2.256158 CGAACGAGCGGTGTGGTA 59.744 61.111 0.00 0.00 0.00 3.25
2085 2209 4.657824 CCGAACGAGCGGTGTGGT 62.658 66.667 11.54 0.00 46.07 4.16
2093 2217 2.837371 AAGTGGCTAGCCGAACGAGC 62.837 60.000 28.28 11.84 45.50 5.03
2094 2218 0.802607 GAAGTGGCTAGCCGAACGAG 60.803 60.000 28.28 0.00 39.42 4.18
2095 2219 1.214589 GAAGTGGCTAGCCGAACGA 59.785 57.895 28.28 8.05 39.42 3.85
2096 2220 2.158959 CGAAGTGGCTAGCCGAACG 61.159 63.158 28.28 24.05 39.42 3.95
2097 2221 2.453638 GCGAAGTGGCTAGCCGAAC 61.454 63.158 28.28 21.28 39.42 3.95
2098 2222 2.125673 GCGAAGTGGCTAGCCGAA 60.126 61.111 28.28 9.71 39.42 4.30
2099 2223 3.068691 AGCGAAGTGGCTAGCCGA 61.069 61.111 28.28 14.97 42.62 5.54
2100 2224 2.887568 CAGCGAAGTGGCTAGCCG 60.888 66.667 28.28 16.79 42.53 5.52
2101 2225 3.198489 GCAGCGAAGTGGCTAGCC 61.198 66.667 27.71 27.71 42.53 3.93
2102 2226 3.198489 GGCAGCGAAGTGGCTAGC 61.198 66.667 6.04 6.04 42.53 3.42
2106 2230 1.663695 TATTTAGGCAGCGAAGTGGC 58.336 50.000 0.00 0.00 43.28 5.01
2107 2231 2.030457 CGTTATTTAGGCAGCGAAGTGG 59.970 50.000 0.00 0.00 0.00 4.00
2108 2232 2.927477 TCGTTATTTAGGCAGCGAAGTG 59.073 45.455 0.00 0.00 0.00 3.16
2109 2233 3.119245 TCTCGTTATTTAGGCAGCGAAGT 60.119 43.478 0.00 0.00 0.00 3.01
2110 2234 3.243177 GTCTCGTTATTTAGGCAGCGAAG 59.757 47.826 0.00 0.00 0.00 3.79
2111 2235 3.184541 GTCTCGTTATTTAGGCAGCGAA 58.815 45.455 0.00 0.00 0.00 4.70
2112 2236 2.793585 CGTCTCGTTATTTAGGCAGCGA 60.794 50.000 0.00 0.00 0.00 4.93
2113 2237 1.517276 CGTCTCGTTATTTAGGCAGCG 59.483 52.381 0.00 0.00 0.00 5.18
2114 2238 2.805845 TCGTCTCGTTATTTAGGCAGC 58.194 47.619 0.00 0.00 0.00 5.25
2115 2239 4.607955 TCATCGTCTCGTTATTTAGGCAG 58.392 43.478 0.00 0.00 0.00 4.85
2116 2240 4.642445 TCATCGTCTCGTTATTTAGGCA 57.358 40.909 0.00 0.00 0.00 4.75
2117 2241 4.085004 GCTTCATCGTCTCGTTATTTAGGC 60.085 45.833 0.00 0.00 0.00 3.93
2118 2242 5.041287 TGCTTCATCGTCTCGTTATTTAGG 58.959 41.667 0.00 0.00 0.00 2.69
2119 2243 6.199154 ACATGCTTCATCGTCTCGTTATTTAG 59.801 38.462 0.00 0.00 0.00 1.85
2120 2244 6.040247 ACATGCTTCATCGTCTCGTTATTTA 58.960 36.000 0.00 0.00 0.00 1.40
2121 2245 4.870426 ACATGCTTCATCGTCTCGTTATTT 59.130 37.500 0.00 0.00 0.00 1.40
2122 2246 4.433615 ACATGCTTCATCGTCTCGTTATT 58.566 39.130 0.00 0.00 0.00 1.40
2123 2247 4.046938 ACATGCTTCATCGTCTCGTTAT 57.953 40.909 0.00 0.00 0.00 1.89
2124 2248 3.503827 ACATGCTTCATCGTCTCGTTA 57.496 42.857 0.00 0.00 0.00 3.18
2125 2249 2.370281 ACATGCTTCATCGTCTCGTT 57.630 45.000 0.00 0.00 0.00 3.85
2126 2250 3.633235 GATACATGCTTCATCGTCTCGT 58.367 45.455 0.00 0.00 0.00 4.18
2127 2251 2.654056 CGATACATGCTTCATCGTCTCG 59.346 50.000 9.97 0.00 37.40 4.04
2128 2252 2.406691 GCGATACATGCTTCATCGTCTC 59.593 50.000 16.18 2.62 42.65 3.36
2129 2253 2.223805 TGCGATACATGCTTCATCGTCT 60.224 45.455 16.18 0.00 42.65 4.18
2130 2254 2.127251 TGCGATACATGCTTCATCGTC 58.873 47.619 16.18 11.23 42.65 4.20
2131 2255 2.130395 CTGCGATACATGCTTCATCGT 58.870 47.619 16.18 0.00 42.65 3.73
2132 2256 1.458445 CCTGCGATACATGCTTCATCG 59.542 52.381 12.59 12.59 43.34 3.84
2133 2257 1.196354 GCCTGCGATACATGCTTCATC 59.804 52.381 0.00 0.00 37.00 2.92
2134 2258 1.202734 AGCCTGCGATACATGCTTCAT 60.203 47.619 0.00 0.00 46.74 2.57
2135 2259 0.178767 AGCCTGCGATACATGCTTCA 59.821 50.000 0.00 0.00 46.74 3.02
2136 2260 2.064762 CTAGCCTGCGATACATGCTTC 58.935 52.381 0.89 0.00 46.74 3.86
2137 2261 1.875576 GCTAGCCTGCGATACATGCTT 60.876 52.381 2.29 0.00 46.74 3.91
2139 2263 0.601046 TGCTAGCCTGCGATACATGC 60.601 55.000 13.29 0.00 39.96 4.06
2140 2264 1.143305 GTGCTAGCCTGCGATACATG 58.857 55.000 13.29 0.00 35.36 3.21
2141 2265 1.043816 AGTGCTAGCCTGCGATACAT 58.956 50.000 13.29 0.00 35.36 2.29
2142 2266 1.609072 CTAGTGCTAGCCTGCGATACA 59.391 52.381 13.29 0.00 35.36 2.29
2143 2267 2.339728 CTAGTGCTAGCCTGCGATAC 57.660 55.000 13.29 1.20 35.36 2.24
2156 2280 0.883814 CAGGCCAGCATAGCTAGTGC 60.884 60.000 5.01 15.97 42.81 4.40
2157 2281 0.883814 GCAGGCCAGCATAGCTAGTG 60.884 60.000 16.36 0.00 36.40 2.74
2158 2282 1.449353 GCAGGCCAGCATAGCTAGT 59.551 57.895 16.36 0.00 36.40 2.57
2159 2283 1.302351 GGCAGGCCAGCATAGCTAG 60.302 63.158 22.80 0.00 36.40 3.42
2160 2284 2.831770 GGCAGGCCAGCATAGCTA 59.168 61.111 22.80 0.00 36.40 3.32
2161 2285 4.559063 CGGCAGGCCAGCATAGCT 62.559 66.667 22.80 0.00 40.77 3.32
2162 2286 4.552365 TCGGCAGGCCAGCATAGC 62.552 66.667 22.80 7.09 35.83 2.97
2163 2287 2.280660 CTCGGCAGGCCAGCATAG 60.281 66.667 22.80 13.97 35.83 2.23
2164 2288 3.865383 CCTCGGCAGGCCAGCATA 61.865 66.667 22.80 7.96 35.83 3.14
2175 2299 3.610791 GACCGCTTTTTGCCTCGGC 62.611 63.158 0.00 0.00 45.23 5.54
2176 2300 2.561373 GACCGCTTTTTGCCTCGG 59.439 61.111 0.00 0.00 46.61 4.63
2177 2301 2.173382 CGACCGCTTTTTGCCTCG 59.827 61.111 0.00 0.00 38.78 4.63
2178 2302 1.082104 CACGACCGCTTTTTGCCTC 60.082 57.895 0.00 0.00 38.78 4.70
2179 2303 1.525077 TCACGACCGCTTTTTGCCT 60.525 52.632 0.00 0.00 38.78 4.75
2180 2304 1.370051 GTCACGACCGCTTTTTGCC 60.370 57.895 0.00 0.00 38.78 4.52
2181 2305 1.721133 CGTCACGACCGCTTTTTGC 60.721 57.895 0.00 0.00 38.57 3.68
2182 2306 0.854062 TACGTCACGACCGCTTTTTG 59.146 50.000 2.91 0.00 0.00 2.44
2183 2307 0.854705 GTACGTCACGACCGCTTTTT 59.145 50.000 2.91 0.00 0.00 1.94
2184 2308 0.031178 AGTACGTCACGACCGCTTTT 59.969 50.000 2.91 0.00 0.00 2.27
2185 2309 0.031178 AAGTACGTCACGACCGCTTT 59.969 50.000 2.91 0.00 0.00 3.51
2186 2310 0.386478 GAAGTACGTCACGACCGCTT 60.386 55.000 2.91 1.94 0.00 4.68
2187 2311 1.208614 GAAGTACGTCACGACCGCT 59.791 57.895 2.91 0.00 0.00 5.52
2188 2312 1.063951 CAGAAGTACGTCACGACCGC 61.064 60.000 2.91 0.00 0.00 5.68
2189 2313 0.453950 CCAGAAGTACGTCACGACCG 60.454 60.000 2.91 0.00 0.00 4.79
2190 2314 0.731855 GCCAGAAGTACGTCACGACC 60.732 60.000 2.91 0.00 0.00 4.79
2191 2315 0.731855 GGCCAGAAGTACGTCACGAC 60.732 60.000 2.91 0.00 0.00 4.34
2192 2316 1.582968 GGCCAGAAGTACGTCACGA 59.417 57.895 2.91 0.00 0.00 4.35
2193 2317 1.800315 CGGCCAGAAGTACGTCACG 60.800 63.158 11.47 0.00 0.00 4.35
2194 2318 1.445582 CCGGCCAGAAGTACGTCAC 60.446 63.158 11.47 0.33 0.00 3.67
2195 2319 2.642254 CCCGGCCAGAAGTACGTCA 61.642 63.158 11.47 0.00 0.00 4.35
2196 2320 2.183555 CCCGGCCAGAAGTACGTC 59.816 66.667 2.24 0.00 0.00 4.34
2197 2321 4.078516 GCCCGGCCAGAAGTACGT 62.079 66.667 2.24 0.00 0.00 3.57
2198 2322 3.310860 AAGCCCGGCCAGAAGTACG 62.311 63.158 5.55 0.00 0.00 3.67
2199 2323 1.745489 CAAGCCCGGCCAGAAGTAC 60.745 63.158 5.55 0.00 0.00 2.73
2200 2324 2.668632 CAAGCCCGGCCAGAAGTA 59.331 61.111 5.55 0.00 0.00 2.24
2201 2325 4.351054 CCAAGCCCGGCCAGAAGT 62.351 66.667 5.55 0.00 0.00 3.01
2219 2343 2.044946 GGTAACAGGCCTGCTGGG 60.045 66.667 33.06 9.34 38.36 4.45
2220 2344 1.271840 TAGGGTAACAGGCCTGCTGG 61.272 60.000 33.06 9.77 39.74 4.85
2221 2345 0.179000 CTAGGGTAACAGGCCTGCTG 59.821 60.000 33.06 11.22 39.74 4.41
2222 2346 0.983378 CCTAGGGTAACAGGCCTGCT 60.983 60.000 33.06 23.84 39.74 4.24
2223 2347 1.272554 ACCTAGGGTAACAGGCCTGC 61.273 60.000 33.06 16.45 35.14 4.85
2224 2348 0.831307 GACCTAGGGTAACAGGCCTG 59.169 60.000 31.60 31.60 35.25 4.85
2225 2349 0.686769 CGACCTAGGGTAACAGGCCT 60.687 60.000 14.81 0.00 35.25 5.19
2226 2350 1.821258 CGACCTAGGGTAACAGGCC 59.179 63.158 14.81 0.00 35.25 5.19
2227 2351 1.143401 GCGACCTAGGGTAACAGGC 59.857 63.158 14.81 1.61 35.25 4.85
2228 2352 0.460311 CAGCGACCTAGGGTAACAGG 59.540 60.000 14.81 0.00 35.25 4.00
2229 2353 1.183549 ACAGCGACCTAGGGTAACAG 58.816 55.000 14.81 0.72 35.25 3.16
2230 2354 1.636148 AACAGCGACCTAGGGTAACA 58.364 50.000 14.81 0.00 35.25 2.41
2231 2355 3.194329 AGTTAACAGCGACCTAGGGTAAC 59.806 47.826 14.81 4.09 35.25 2.50
2232 2356 3.434309 AGTTAACAGCGACCTAGGGTAA 58.566 45.455 14.81 0.00 35.25 2.85
2233 2357 3.019564 GAGTTAACAGCGACCTAGGGTA 58.980 50.000 14.81 0.00 35.25 3.69
2234 2358 1.823610 GAGTTAACAGCGACCTAGGGT 59.176 52.381 14.81 0.00 39.44 4.34
2235 2359 1.202268 CGAGTTAACAGCGACCTAGGG 60.202 57.143 14.81 0.00 0.00 3.53
2236 2360 1.471684 ACGAGTTAACAGCGACCTAGG 59.528 52.381 22.26 7.41 0.00 3.02
2237 2361 2.516923 CACGAGTTAACAGCGACCTAG 58.483 52.381 22.26 7.39 0.00 3.02
2238 2362 1.401931 GCACGAGTTAACAGCGACCTA 60.402 52.381 22.26 0.00 0.00 3.08
2239 2363 0.666577 GCACGAGTTAACAGCGACCT 60.667 55.000 22.26 3.16 0.00 3.85
2240 2364 0.942410 TGCACGAGTTAACAGCGACC 60.942 55.000 22.26 14.26 0.00 4.79
2241 2365 1.068474 ATGCACGAGTTAACAGCGAC 58.932 50.000 22.26 15.38 0.00 5.19
2242 2366 1.067693 CATGCACGAGTTAACAGCGA 58.932 50.000 22.26 5.79 0.00 4.93
2243 2367 0.790207 ACATGCACGAGTTAACAGCG 59.210 50.000 16.21 16.21 0.00 5.18
2244 2368 2.574322 CAACATGCACGAGTTAACAGC 58.426 47.619 8.61 6.87 0.00 4.40
2245 2369 2.095768 CCCAACATGCACGAGTTAACAG 60.096 50.000 8.61 3.98 0.00 3.16
2246 2370 1.876799 CCCAACATGCACGAGTTAACA 59.123 47.619 8.61 0.00 0.00 2.41
2247 2371 1.199097 CCCCAACATGCACGAGTTAAC 59.801 52.381 0.00 0.00 0.00 2.01
2248 2372 1.529226 CCCCAACATGCACGAGTTAA 58.471 50.000 0.00 0.00 0.00 2.01
2249 2373 0.322098 CCCCCAACATGCACGAGTTA 60.322 55.000 0.00 0.00 0.00 2.24
2250 2374 1.603455 CCCCCAACATGCACGAGTT 60.603 57.895 0.00 0.00 0.00 3.01
2251 2375 2.034066 CCCCCAACATGCACGAGT 59.966 61.111 0.00 0.00 0.00 4.18
2252 2376 3.443045 GCCCCCAACATGCACGAG 61.443 66.667 0.00 0.00 0.00 4.18
2255 2379 2.921972 TTGGCCCCCAACATGCAC 60.922 61.111 0.00 0.00 38.75 4.57
2256 2380 2.604079 CTTGGCCCCCAACATGCA 60.604 61.111 0.00 0.00 38.75 3.96
2257 2381 1.891722 CTTCTTGGCCCCCAACATGC 61.892 60.000 0.00 0.00 38.75 4.06
2258 2382 0.542702 ACTTCTTGGCCCCCAACATG 60.543 55.000 0.00 0.00 38.75 3.21
2259 2383 0.542702 CACTTCTTGGCCCCCAACAT 60.543 55.000 0.00 0.00 38.75 2.71
2260 2384 1.152567 CACTTCTTGGCCCCCAACA 60.153 57.895 0.00 0.00 38.75 3.33
2261 2385 2.574018 GCACTTCTTGGCCCCCAAC 61.574 63.158 0.00 0.00 38.75 3.77
2262 2386 2.203625 GCACTTCTTGGCCCCCAA 60.204 61.111 0.00 0.00 41.69 4.12
2263 2387 4.659172 CGCACTTCTTGGCCCCCA 62.659 66.667 0.00 0.00 0.00 4.96
2265 2389 4.344865 TCCGCACTTCTTGGCCCC 62.345 66.667 0.00 0.00 0.00 5.80
2266 2390 2.747855 CTCCGCACTTCTTGGCCC 60.748 66.667 0.00 0.00 0.00 5.80
2267 2391 3.435186 GCTCCGCACTTCTTGGCC 61.435 66.667 0.00 0.00 0.00 5.36
2268 2392 3.793144 CGCTCCGCACTTCTTGGC 61.793 66.667 0.00 0.00 0.00 4.52
2269 2393 2.357517 ACGCTCCGCACTTCTTGG 60.358 61.111 0.00 0.00 0.00 3.61
2270 2394 2.720758 CGACGCTCCGCACTTCTTG 61.721 63.158 0.00 0.00 0.00 3.02
2271 2395 2.430921 CGACGCTCCGCACTTCTT 60.431 61.111 0.00 0.00 0.00 2.52
2272 2396 1.859427 TAACGACGCTCCGCACTTCT 61.859 55.000 0.00 0.00 0.00 2.85
2273 2397 1.403972 CTAACGACGCTCCGCACTTC 61.404 60.000 0.00 0.00 0.00 3.01
2274 2398 1.443872 CTAACGACGCTCCGCACTT 60.444 57.895 0.00 0.00 0.00 3.16
2275 2399 2.178521 CTAACGACGCTCCGCACT 59.821 61.111 0.00 0.00 0.00 4.40
2276 2400 2.126580 ACTAACGACGCTCCGCAC 60.127 61.111 0.00 0.00 0.00 5.34
2277 2401 1.859427 AAGACTAACGACGCTCCGCA 61.859 55.000 0.00 0.00 0.00 5.69
2278 2402 0.731855 AAAGACTAACGACGCTCCGC 60.732 55.000 0.00 0.00 0.00 5.54
2279 2403 1.694639 AAAAGACTAACGACGCTCCG 58.305 50.000 0.00 0.00 0.00 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.