Multiple sequence alignment - TraesCS2B01G342400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G342400 chr2B 100.000 7194 0 0 632 7825 488204966 488197773 0.000000e+00 13285.0
1 TraesCS2B01G342400 chr2B 99.635 1371 5 0 3104 4474 45692132 45690762 0.000000e+00 2505.0
2 TraesCS2B01G342400 chr2B 100.000 293 0 0 1 293 488205597 488205305 6.910000e-150 542.0
3 TraesCS2B01G342400 chr2B 97.674 86 2 0 6248 6333 669186934 669186849 1.760000e-31 148.0
4 TraesCS2B01G342400 chr2B 96.629 89 2 1 6245 6332 620595345 620595257 6.330000e-31 147.0
5 TraesCS2B01G342400 chr2B 94.444 72 4 0 3029 3100 247930131 247930060 2.310000e-20 111.0
6 TraesCS2B01G342400 chr2B 82.836 134 12 8 2976 3099 718641070 718640938 8.300000e-20 110.0
7 TraesCS2B01G342400 chr2D 97.860 1776 33 4 4474 6249 416403733 416401963 0.000000e+00 3064.0
8 TraesCS2B01G342400 chr2D 93.750 2080 64 15 836 2863 416406216 416404151 0.000000e+00 3061.0
9 TraesCS2B01G342400 chr2D 94.147 1008 26 11 6331 7325 416401964 416400977 0.000000e+00 1504.0
10 TraesCS2B01G342400 chr2D 95.781 237 10 0 2864 3100 416404101 416403865 4.430000e-102 383.0
11 TraesCS2B01G342400 chr2D 86.957 253 16 9 7587 7825 416399278 416399029 1.290000e-67 268.0
12 TraesCS2B01G342400 chr2D 89.500 200 16 3 93 292 416406768 416406574 1.690000e-61 248.0
13 TraesCS2B01G342400 chr2D 91.603 131 9 2 632 761 416406356 416406227 6.240000e-41 180.0
14 TraesCS2B01G342400 chr2D 94.444 72 4 0 3029 3100 192742351 192742422 2.310000e-20 111.0
15 TraesCS2B01G342400 chr4B 99.564 1376 6 0 3098 4473 240104222 240105597 0.000000e+00 2508.0
16 TraesCS2B01G342400 chr7B 99.563 1373 6 0 3104 4476 399781250 399782622 0.000000e+00 2503.0
17 TraesCS2B01G342400 chr7B 89.041 146 12 2 2956 3100 574471900 574471758 2.240000e-40 178.0
18 TraesCS2B01G342400 chr7B 97.753 89 2 0 6247 6335 292839277 292839365 3.780000e-33 154.0
19 TraesCS2B01G342400 chr7B 95.556 90 4 0 6246 6335 263113300 263113389 2.280000e-30 145.0
20 TraesCS2B01G342400 chr3A 99.635 1371 3 1 3104 4474 212125718 212127086 0.000000e+00 2503.0
21 TraesCS2B01G342400 chr3B 99.563 1372 6 0 3104 4475 341961606 341960235 0.000000e+00 2501.0
22 TraesCS2B01G342400 chr3B 99.490 1373 4 1 3104 4476 368603138 368601769 0.000000e+00 2494.0
23 TraesCS2B01G342400 chr3B 99.489 1370 7 0 3104 4473 126480546 126481915 0.000000e+00 2492.0
24 TraesCS2B01G342400 chr3B 98.837 86 1 0 6247 6332 719826058 719826143 3.780000e-33 154.0
25 TraesCS2B01G342400 chr1B 99.635 1370 2 1 3104 4473 271101108 271102474 0.000000e+00 2499.0
26 TraesCS2B01G342400 chr5A 99.562 1370 3 1 3104 4473 572826658 572825292 0.000000e+00 2494.0
27 TraesCS2B01G342400 chr5A 88.034 117 8 4 4568 4679 172464736 172464621 4.930000e-27 134.0
28 TraesCS2B01G342400 chr5A 88.235 102 9 2 4575 4674 172509034 172508934 1.380000e-22 119.0
29 TraesCS2B01G342400 chr5A 78.571 140 19 7 7620 7750 29886706 29886569 1.810000e-11 82.4
30 TraesCS2B01G342400 chr2A 93.776 1430 51 12 836 2239 582642742 582641325 0.000000e+00 2113.0
31 TraesCS2B01G342400 chr2A 95.781 1185 40 6 5066 6249 582639964 582638789 0.000000e+00 1903.0
32 TraesCS2B01G342400 chr2A 89.455 1119 52 22 6336 7423 582638785 582637702 0.000000e+00 1352.0
33 TraesCS2B01G342400 chr2A 96.985 597 15 2 4474 5069 582640638 582640044 0.000000e+00 1000.0
34 TraesCS2B01G342400 chr2A 96.981 265 8 0 2599 2863 582641325 582641061 5.570000e-121 446.0
35 TraesCS2B01G342400 chr2A 95.102 245 7 2 2861 3100 582641014 582640770 1.590000e-101 381.0
36 TraesCS2B01G342400 chr2A 89.153 295 24 6 1 293 582643403 582643115 2.080000e-95 361.0
37 TraesCS2B01G342400 chr2A 89.922 258 20 4 2332 2583 606818537 606818280 2.110000e-85 327.0
38 TraesCS2B01G342400 chr2A 92.086 139 8 3 632 768 582642884 582642747 8.010000e-45 193.0
39 TraesCS2B01G342400 chr2A 93.056 72 5 0 3029 3100 205213669 205213598 1.070000e-18 106.0
40 TraesCS2B01G342400 chr5D 86.508 378 15 7 2245 2589 495306453 495306827 4.430000e-102 383.0
41 TraesCS2B01G342400 chr5D 96.591 88 3 0 6246 6333 56448547 56448460 6.330000e-31 147.0
42 TraesCS2B01G342400 chr1D 90.299 268 20 2 2338 2599 250068099 250068366 5.810000e-91 346.0
43 TraesCS2B01G342400 chr1D 95.161 62 3 0 2238 2299 250048713 250048774 1.800000e-16 99.0
44 TraesCS2B01G342400 chr1D 93.478 46 2 1 2291 2336 250068027 250068071 5.070000e-07 67.6
45 TraesCS2B01G342400 chrUn 90.708 226 13 4 2352 2571 132045000 132044777 2.140000e-75 294.0
46 TraesCS2B01G342400 chr7D 88.202 178 17 2 2923 3100 533907089 533906916 7.960000e-50 209.0
47 TraesCS2B01G342400 chr7D 86.047 86 10 1 4474 4557 285238608 285238523 3.010000e-14 91.6
48 TraesCS2B01G342400 chr7A 91.724 145 7 3 2956 3100 613634478 613634339 6.190000e-46 196.0
49 TraesCS2B01G342400 chr6B 98.824 85 1 0 6248 6332 6785937 6786021 1.360000e-32 152.0
50 TraesCS2B01G342400 chr5B 95.833 96 1 2 4474 4567 185723491 185723585 1.360000e-32 152.0
51 TraesCS2B01G342400 chr5B 97.674 86 2 0 6247 6332 22532644 22532729 1.760000e-31 148.0
52 TraesCS2B01G342400 chr4A 96.629 89 2 1 6248 6335 743141124 743141212 6.330000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G342400 chr2B 488197773 488205597 7824 True 6913.500 13285 100.000000 1 7825 2 chr2B.!!$R6 7824
1 TraesCS2B01G342400 chr2B 45690762 45692132 1370 True 2505.000 2505 99.635000 3104 4474 1 chr2B.!!$R1 1370
2 TraesCS2B01G342400 chr2D 416399029 416406768 7739 True 1244.000 3064 92.799714 93 7825 7 chr2D.!!$R1 7732
3 TraesCS2B01G342400 chr4B 240104222 240105597 1375 False 2508.000 2508 99.564000 3098 4473 1 chr4B.!!$F1 1375
4 TraesCS2B01G342400 chr7B 399781250 399782622 1372 False 2503.000 2503 99.563000 3104 4476 1 chr7B.!!$F3 1372
5 TraesCS2B01G342400 chr3A 212125718 212127086 1368 False 2503.000 2503 99.635000 3104 4474 1 chr3A.!!$F1 1370
6 TraesCS2B01G342400 chr3B 341960235 341961606 1371 True 2501.000 2501 99.563000 3104 4475 1 chr3B.!!$R1 1371
7 TraesCS2B01G342400 chr3B 368601769 368603138 1369 True 2494.000 2494 99.490000 3104 4476 1 chr3B.!!$R2 1372
8 TraesCS2B01G342400 chr3B 126480546 126481915 1369 False 2492.000 2492 99.489000 3104 4473 1 chr3B.!!$F1 1369
9 TraesCS2B01G342400 chr1B 271101108 271102474 1366 False 2499.000 2499 99.635000 3104 4473 1 chr1B.!!$F1 1369
10 TraesCS2B01G342400 chr5A 572825292 572826658 1366 True 2494.000 2494 99.562000 3104 4473 1 chr5A.!!$R4 1369
11 TraesCS2B01G342400 chr2A 582637702 582643403 5701 True 968.625 2113 93.664875 1 7423 8 chr2A.!!$R3 7422

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
813 815 0.249489 AGACTCGACAGCTTGCGTTT 60.249 50.000 5.05 0.0 0.00 3.60 F
1587 1611 0.179020 TGTTTGTGAGCACTCCCAGG 60.179 55.000 1.99 0.0 0.00 4.45 F
2863 2925 0.390860 ATCCAAGCGAGAGGGATTCG 59.609 55.000 0.00 0.0 38.22 3.34 F
3081 3197 0.617413 ATCTGCTTCTCCACCCACAG 59.383 55.000 0.00 0.0 0.00 3.66 F
4838 4955 2.552315 CTGGTTGACTGCGGTTTGTAAT 59.448 45.455 0.00 0.0 0.00 1.89 F
6262 6462 0.030908 GCAATACTCCCTCCGTCTCG 59.969 60.000 0.00 0.0 0.00 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2773 2832 0.035458 AGCCAGTCTTTCCCGTGAAG 59.965 55.000 0.00 0.00 0.00 3.02 R
2953 3069 0.326264 GAAAGAGCAGAGGAGGGCAA 59.674 55.000 0.00 0.00 0.00 4.52 R
4548 4664 3.549794 GCACTCTAAATCTGGCCAGAAT 58.450 45.455 38.02 28.52 41.36 2.40 R
5028 5145 6.468333 TGCCACATTTGATACAAATGCTAT 57.532 33.333 26.44 12.42 40.35 2.97 R
6316 6516 0.324091 GAACTACTCCCTCCGTCCCA 60.324 60.000 0.00 0.00 0.00 4.37 R
7441 9343 0.033090 GAGGGGTTGAAGACGAACGT 59.967 55.000 0.00 0.00 0.00 3.99 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 8.587950 CACTAGAAAGTCTTCATTATCGACAAC 58.412 37.037 0.00 0.00 31.97 3.32
48 49 8.651391 TCATTATCGACAACGTTAACCATAAT 57.349 30.769 0.00 5.82 36.81 1.28
80 82 5.745294 CCATGTGCAAATATAGCTGTGAAAC 59.255 40.000 0.00 0.00 37.35 2.78
126 128 3.587797 TCTACAATCCCACGTCTCAAC 57.412 47.619 0.00 0.00 0.00 3.18
168 170 3.066064 CGAGATCCAAACACCACAAAACA 59.934 43.478 0.00 0.00 0.00 2.83
179 181 2.903798 CCACAAAACATGGTTGTTGCT 58.096 42.857 12.82 0.00 45.30 3.91
245 247 3.971245 TTTTTGTGTGAACCTGGCTTT 57.029 38.095 0.00 0.00 0.00 3.51
251 253 3.134985 TGTGTGAACCTGGCTTTACTACA 59.865 43.478 0.00 0.86 0.00 2.74
283 285 7.432148 AATATGTTAGAAAATCCCCAAACCC 57.568 36.000 0.00 0.00 0.00 4.11
284 286 3.512496 TGTTAGAAAATCCCCAAACCCC 58.488 45.455 0.00 0.00 0.00 4.95
285 287 2.494471 GTTAGAAAATCCCCAAACCCCG 59.506 50.000 0.00 0.00 0.00 5.73
286 288 0.902984 AGAAAATCCCCAAACCCCGC 60.903 55.000 0.00 0.00 0.00 6.13
287 289 1.152226 AAAATCCCCAAACCCCGCA 60.152 52.632 0.00 0.00 0.00 5.69
288 290 0.546507 AAAATCCCCAAACCCCGCAT 60.547 50.000 0.00 0.00 0.00 4.73
289 291 0.336737 AAATCCCCAAACCCCGCATA 59.663 50.000 0.00 0.00 0.00 3.14
290 292 0.560688 AATCCCCAAACCCCGCATAT 59.439 50.000 0.00 0.00 0.00 1.78
292 294 1.530655 CCCCAAACCCCGCATATCC 60.531 63.158 0.00 0.00 0.00 2.59
754 756 7.929941 TTTTTGGGCAAAAATACTGAAAGTT 57.070 28.000 0.00 0.00 43.98 2.66
755 757 7.929941 TTTTGGGCAAAAATACTGAAAGTTT 57.070 28.000 0.00 0.00 39.93 2.66
756 758 8.341892 TTTTGGGCAAAAATACTGAAAGTTTT 57.658 26.923 0.00 0.00 39.93 2.43
807 809 4.792521 AGAACAATAGACTCGACAGCTT 57.207 40.909 0.00 0.00 0.00 3.74
812 814 0.596577 TAGACTCGACAGCTTGCGTT 59.403 50.000 5.05 0.00 0.00 4.84
813 815 0.249489 AGACTCGACAGCTTGCGTTT 60.249 50.000 5.05 0.00 0.00 3.60
814 816 0.582005 GACTCGACAGCTTGCGTTTT 59.418 50.000 5.05 0.00 0.00 2.43
815 817 1.003866 GACTCGACAGCTTGCGTTTTT 60.004 47.619 5.05 0.00 0.00 1.94
848 850 0.468226 TGAGACAAACCCGACAGCTT 59.532 50.000 0.00 0.00 0.00 3.74
873 875 0.604243 ATAAAGGCACCGCGAACACA 60.604 50.000 8.23 0.00 0.00 3.72
888 890 1.153168 CACACGGCCCCCATAAGAG 60.153 63.158 0.00 0.00 0.00 2.85
904 906 3.941704 AAGAGGAGGCCCAATTAGAAG 57.058 47.619 0.00 0.00 33.88 2.85
912 914 2.774809 GGCCCAATTAGAAGTCTCCTCT 59.225 50.000 0.00 0.00 0.00 3.69
917 920 4.959210 CCAATTAGAAGTCTCCTCTCTCCA 59.041 45.833 0.00 0.00 0.00 3.86
920 923 3.085952 AGAAGTCTCCTCTCTCCACAG 57.914 52.381 0.00 0.00 0.00 3.66
921 924 1.476488 GAAGTCTCCTCTCTCCACAGC 59.524 57.143 0.00 0.00 0.00 4.40
922 925 0.407528 AGTCTCCTCTCTCCACAGCA 59.592 55.000 0.00 0.00 0.00 4.41
923 926 0.817013 GTCTCCTCTCTCCACAGCAG 59.183 60.000 0.00 0.00 0.00 4.24
963 972 2.848032 CCTCCCCGGAAACCCAAA 59.152 61.111 0.73 0.00 33.16 3.28
994 1003 2.358737 AGCTCGCGGAGGGTTTTG 60.359 61.111 6.13 0.00 42.82 2.44
999 1008 1.740296 CGCGGAGGGTTTTGTCGAT 60.740 57.895 0.00 0.00 34.98 3.59
1198 1207 1.005156 GCCTTTGATTTTGGCGCCA 60.005 52.632 29.03 29.03 37.11 5.69
1315 1324 2.034879 CGAGGCAGCGTTTGGTGAT 61.035 57.895 0.00 0.00 46.53 3.06
1329 1338 1.017387 GGTGATCGACTGATTTGGGC 58.983 55.000 0.00 0.00 34.09 5.36
1482 1500 2.203153 GTGGCCTGTGTCCGTGTT 60.203 61.111 3.32 0.00 0.00 3.32
1483 1501 2.110213 TGGCCTGTGTCCGTGTTC 59.890 61.111 3.32 0.00 0.00 3.18
1484 1502 2.426023 GGCCTGTGTCCGTGTTCT 59.574 61.111 0.00 0.00 0.00 3.01
1485 1503 1.668151 GGCCTGTGTCCGTGTTCTC 60.668 63.158 0.00 0.00 0.00 2.87
1486 1504 1.367840 GCCTGTGTCCGTGTTCTCT 59.632 57.895 0.00 0.00 0.00 3.10
1487 1505 0.667792 GCCTGTGTCCGTGTTCTCTC 60.668 60.000 0.00 0.00 0.00 3.20
1488 1506 0.962489 CCTGTGTCCGTGTTCTCTCT 59.038 55.000 0.00 0.00 0.00 3.10
1587 1611 0.179020 TGTTTGTGAGCACTCCCAGG 60.179 55.000 1.99 0.00 0.00 4.45
1763 1787 4.548669 AGAACCCCTATACTCTTCAGACC 58.451 47.826 0.00 0.00 0.00 3.85
1772 1796 8.254508 CCCTATACTCTTCAGACCAATATAAGC 58.745 40.741 0.00 0.00 0.00 3.09
1868 1892 4.220693 TGTCAATCTCCATTACCACCAG 57.779 45.455 0.00 0.00 0.00 4.00
1883 1907 1.869767 CACCAGATATGGCGCTTCTTC 59.130 52.381 6.21 0.00 0.00 2.87
1955 1982 8.515414 GCTCCATACTCCCATTATGTTAAATTC 58.485 37.037 0.00 0.00 0.00 2.17
1972 1999 9.868277 TGTTAAATTCTGTGTCAATGAAACTTT 57.132 25.926 5.05 0.11 0.00 2.66
2099 2126 6.183360 GCACCTTATCTGCTAATTAAACGGTT 60.183 38.462 0.00 0.00 0.00 4.44
2152 2179 8.677300 TCTGAAACAGAATTATTGCCTGAATAC 58.323 33.333 0.00 0.00 37.57 1.89
2239 2266 8.947115 CAGTTAAATTACTAGGCAGTTAGCTTT 58.053 33.333 0.00 0.00 44.79 3.51
2294 2321 6.561519 ACCTAAGCATTCCAATACTACAGT 57.438 37.500 0.00 0.00 0.00 3.55
2405 2458 2.619177 GCATGAGAGATCATTTGCTGCT 59.381 45.455 0.00 0.00 0.00 4.24
2418 2471 6.108015 TCATTTGCTGCTTTTCTCAGTTTTT 58.892 32.000 0.00 0.00 34.21 1.94
2516 2570 3.818773 TGCCACTTTAACTAGAGCCAAAC 59.181 43.478 0.00 0.00 0.00 2.93
2766 2825 2.577593 GGAAAGAGTAGCCCGCGT 59.422 61.111 4.92 0.00 0.00 6.01
2773 2832 1.152383 GAGTAGCCCGCGTGGAAATC 61.152 60.000 18.79 6.62 37.49 2.17
2834 2896 2.041216 GAGGAGGGAGGGAGAGAGTATC 59.959 59.091 0.00 0.00 0.00 2.24
2863 2925 0.390860 ATCCAAGCGAGAGGGATTCG 59.609 55.000 0.00 0.00 38.22 3.34
2864 2926 0.683179 TCCAAGCGAGAGGGATTCGA 60.683 55.000 0.00 0.00 40.36 3.71
2865 2927 0.390860 CCAAGCGAGAGGGATTCGAT 59.609 55.000 0.00 0.00 40.36 3.59
2953 3069 3.829601 CTGTACTTGTCTCACTTCTCCCT 59.170 47.826 0.00 0.00 0.00 4.20
2984 3100 3.331889 TCTGCTCTTTCTTTCATCCCCTT 59.668 43.478 0.00 0.00 0.00 3.95
2996 3112 1.919600 ATCCCCTTCCAGTGCTCTGC 61.920 60.000 10.32 0.00 40.09 4.26
3006 3122 0.835543 AGTGCTCTGCTTCTCCCAGT 60.836 55.000 0.00 0.00 0.00 4.00
3043 3159 2.690510 GGCTGCTCCTTCCCCTCT 60.691 66.667 0.00 0.00 0.00 3.69
3081 3197 0.617413 ATCTGCTTCTCCACCCACAG 59.383 55.000 0.00 0.00 0.00 3.66
4838 4955 2.552315 CTGGTTGACTGCGGTTTGTAAT 59.448 45.455 0.00 0.00 0.00 1.89
4855 4972 9.884465 GGTTTGTAATATGTTCTATGCTGATTC 57.116 33.333 0.00 0.00 0.00 2.52
4998 5115 9.260002 GATGATCAAAAGGTACATTGTTTTGTT 57.740 29.630 0.00 10.83 40.50 2.83
5000 5117 8.253810 TGATCAAAAGGTACATTGTTTTGTTCA 58.746 29.630 19.21 19.21 42.24 3.18
5176 5376 3.509967 ACACTTGGTGTCTATCGATGTGA 59.490 43.478 8.54 3.42 43.92 3.58
5343 5543 6.567769 ACAAAGCTTACAAAAACATGTTCG 57.432 33.333 12.39 6.32 34.75 3.95
5385 5585 0.540365 CTGTGAAGGCCACCACCATT 60.540 55.000 20.36 0.00 45.09 3.16
5520 5720 4.822685 TTGCAAATGGAAAGGCATACAT 57.177 36.364 0.00 0.00 35.98 2.29
5820 6020 6.724441 TGATGGATGAGGTATAGGATTACGTT 59.276 38.462 0.00 0.00 0.00 3.99
6151 6351 6.127814 GGCTGAAGATGAATTTGAAGATGACA 60.128 38.462 0.00 0.00 0.00 3.58
6249 6449 0.958091 TGTGTGCCCTTGTGCAATAC 59.042 50.000 0.00 0.00 44.11 1.89
6251 6451 1.200020 GTGTGCCCTTGTGCAATACTC 59.800 52.381 0.00 0.00 44.11 2.59
6252 6452 0.811281 GTGCCCTTGTGCAATACTCC 59.189 55.000 0.00 0.00 44.11 3.85
6253 6453 0.323360 TGCCCTTGTGCAATACTCCC 60.323 55.000 0.00 0.00 38.56 4.30
6254 6454 0.034089 GCCCTTGTGCAATACTCCCT 60.034 55.000 0.00 0.00 0.00 4.20
6255 6455 2.019156 GCCCTTGTGCAATACTCCCTC 61.019 57.143 0.00 0.00 0.00 4.30
6256 6456 1.408822 CCCTTGTGCAATACTCCCTCC 60.409 57.143 0.00 0.00 0.00 4.30
6257 6457 1.656652 CTTGTGCAATACTCCCTCCG 58.343 55.000 0.00 0.00 0.00 4.63
6258 6458 0.981183 TTGTGCAATACTCCCTCCGT 59.019 50.000 0.00 0.00 0.00 4.69
6259 6459 0.535335 TGTGCAATACTCCCTCCGTC 59.465 55.000 0.00 0.00 0.00 4.79
6260 6460 0.824759 GTGCAATACTCCCTCCGTCT 59.175 55.000 0.00 0.00 0.00 4.18
6261 6461 1.112113 TGCAATACTCCCTCCGTCTC 58.888 55.000 0.00 0.00 0.00 3.36
6262 6462 0.030908 GCAATACTCCCTCCGTCTCG 59.969 60.000 0.00 0.00 0.00 4.04
6263 6463 1.390565 CAATACTCCCTCCGTCTCGT 58.609 55.000 0.00 0.00 0.00 4.18
6264 6464 2.569059 CAATACTCCCTCCGTCTCGTA 58.431 52.381 0.00 0.00 0.00 3.43
6265 6465 2.947652 CAATACTCCCTCCGTCTCGTAA 59.052 50.000 0.00 0.00 0.00 3.18
6266 6466 3.505480 ATACTCCCTCCGTCTCGTAAT 57.495 47.619 0.00 0.00 0.00 1.89
6267 6467 1.390565 ACTCCCTCCGTCTCGTAATG 58.609 55.000 0.00 0.00 0.00 1.90
6268 6468 1.340795 ACTCCCTCCGTCTCGTAATGT 60.341 52.381 0.00 0.00 0.00 2.71
6269 6469 2.092753 ACTCCCTCCGTCTCGTAATGTA 60.093 50.000 0.00 0.00 0.00 2.29
6270 6470 2.947652 CTCCCTCCGTCTCGTAATGTAA 59.052 50.000 0.00 0.00 0.00 2.41
6271 6471 2.947652 TCCCTCCGTCTCGTAATGTAAG 59.052 50.000 0.00 0.00 0.00 2.34
6272 6472 2.947652 CCCTCCGTCTCGTAATGTAAGA 59.052 50.000 0.00 0.00 0.00 2.10
6273 6473 3.243002 CCCTCCGTCTCGTAATGTAAGAC 60.243 52.174 0.00 0.00 36.82 3.01
6324 6524 3.720949 CGTCTTACATTATGGGACGGA 57.279 47.619 20.50 2.30 43.69 4.69
6325 6525 3.639538 CGTCTTACATTATGGGACGGAG 58.360 50.000 20.50 2.74 43.69 4.63
6326 6526 3.552273 CGTCTTACATTATGGGACGGAGG 60.552 52.174 20.50 5.87 43.69 4.30
6327 6527 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
6328 6528 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
6329 6529 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
6330 6530 1.344087 ACATTATGGGACGGAGGGAGT 60.344 52.381 0.00 0.00 0.00 3.85
6331 6531 2.090943 ACATTATGGGACGGAGGGAGTA 60.091 50.000 0.00 0.00 0.00 2.59
6332 6532 2.376695 TTATGGGACGGAGGGAGTAG 57.623 55.000 0.00 0.00 0.00 2.57
6333 6533 1.229131 TATGGGACGGAGGGAGTAGT 58.771 55.000 0.00 0.00 0.00 2.73
6334 6534 0.338814 ATGGGACGGAGGGAGTAGTT 59.661 55.000 0.00 0.00 0.00 2.24
6448 6648 9.844790 CTTGTTTGACTTCTCAATGCATATTTA 57.155 29.630 0.00 0.00 36.26 1.40
6468 6668 5.963176 TTACTGTTCATACCACGACACTA 57.037 39.130 0.00 0.00 0.00 2.74
6535 6735 8.773033 AAAGGAATTTAGGATGACATTAGCAT 57.227 30.769 0.00 0.00 0.00 3.79
6671 6896 7.242783 GGCCTTATTTTTGTTTTATGCACATG 58.757 34.615 0.00 0.00 0.00 3.21
6702 6927 3.286751 GCCTGACGCTGTTTGCCA 61.287 61.111 0.00 0.00 38.78 4.92
6779 7004 9.790344 CAACTTCTATAGGGATTTGATGAAGAT 57.210 33.333 0.00 0.00 35.20 2.40
6829 7054 2.761809 AGATGATGAGGAGTGAAGCCT 58.238 47.619 0.00 0.00 38.81 4.58
6892 7117 0.629596 TGTAGAGTGGAGATCCCGGT 59.370 55.000 0.00 0.00 37.93 5.28
6968 7196 5.303078 TGACTTAGCTGGATCTGTAGGATTC 59.697 44.000 0.00 0.00 34.33 2.52
6973 7201 4.283212 AGCTGGATCTGTAGGATTCTAAGC 59.717 45.833 0.00 0.00 34.33 3.09
7045 7273 3.202818 AGATTCCCATATGTGGCACTTCA 59.797 43.478 19.83 3.99 44.62 3.02
7125 7355 4.619760 TGAGATACAGTTGCTTTAACGACG 59.380 41.667 0.00 0.00 44.15 5.12
7225 7455 7.028962 ACCATTTTTGTATCACATCATTCACG 58.971 34.615 0.00 0.00 0.00 4.35
7420 9322 9.567776 TTATTTTGTCAGTCACTTTTATCCTGA 57.432 29.630 0.00 0.00 0.00 3.86
7421 9323 7.873719 TTTTGTCAGTCACTTTTATCCTGAA 57.126 32.000 0.00 0.00 34.24 3.02
7422 9324 6.861065 TTGTCAGTCACTTTTATCCTGAAC 57.139 37.500 0.00 0.00 34.24 3.18
7423 9325 4.988540 TGTCAGTCACTTTTATCCTGAACG 59.011 41.667 0.00 0.00 34.24 3.95
7424 9326 4.389077 GTCAGTCACTTTTATCCTGAACGG 59.611 45.833 0.00 0.00 34.24 4.44
7425 9327 3.125316 CAGTCACTTTTATCCTGAACGGC 59.875 47.826 0.00 0.00 0.00 5.68
7426 9328 2.418976 GTCACTTTTATCCTGAACGGCC 59.581 50.000 0.00 0.00 0.00 6.13
7427 9329 1.743394 CACTTTTATCCTGAACGGCCC 59.257 52.381 0.00 0.00 0.00 5.80
7428 9330 1.353022 ACTTTTATCCTGAACGGCCCA 59.647 47.619 0.00 0.00 0.00 5.36
7429 9331 2.224917 ACTTTTATCCTGAACGGCCCAA 60.225 45.455 0.00 0.00 0.00 4.12
7430 9332 2.588464 TTTATCCTGAACGGCCCAAA 57.412 45.000 0.00 0.00 0.00 3.28
7431 9333 2.588464 TTATCCTGAACGGCCCAAAA 57.412 45.000 0.00 0.00 0.00 2.44
7432 9334 1.828979 TATCCTGAACGGCCCAAAAC 58.171 50.000 0.00 0.00 0.00 2.43
7433 9335 0.178975 ATCCTGAACGGCCCAAAACA 60.179 50.000 0.00 0.00 0.00 2.83
7434 9336 0.178975 TCCTGAACGGCCCAAAACAT 60.179 50.000 0.00 0.00 0.00 2.71
7435 9337 1.074084 TCCTGAACGGCCCAAAACATA 59.926 47.619 0.00 0.00 0.00 2.29
7436 9338 1.201414 CCTGAACGGCCCAAAACATAC 59.799 52.381 0.00 0.00 0.00 2.39
7437 9339 1.201414 CTGAACGGCCCAAAACATACC 59.799 52.381 0.00 0.00 0.00 2.73
7439 9341 0.250814 AACGGCCCAAAACATACCGA 60.251 50.000 6.76 0.00 46.71 4.69
7440 9342 0.034863 ACGGCCCAAAACATACCGAT 60.035 50.000 6.76 0.00 46.71 4.18
7441 9343 1.209990 ACGGCCCAAAACATACCGATA 59.790 47.619 6.76 0.00 46.71 2.92
7442 9344 1.600485 CGGCCCAAAACATACCGATAC 59.400 52.381 0.00 0.00 46.71 2.24
7443 9345 1.600485 GGCCCAAAACATACCGATACG 59.400 52.381 0.00 0.00 0.00 3.06
7444 9346 2.282407 GCCCAAAACATACCGATACGT 58.718 47.619 0.00 0.00 0.00 3.57
7445 9347 2.679336 GCCCAAAACATACCGATACGTT 59.321 45.455 0.00 0.00 0.00 3.99
7446 9348 3.242511 GCCCAAAACATACCGATACGTTC 60.243 47.826 0.00 0.00 0.00 3.95
7448 9350 3.613737 CCAAAACATACCGATACGTTCGT 59.386 43.478 15.48 2.91 46.65 3.85
7449 9351 4.259530 CCAAAACATACCGATACGTTCGTC 60.260 45.833 15.48 3.17 46.65 4.20
7450 9352 4.361451 AAACATACCGATACGTTCGTCT 57.639 40.909 15.48 0.00 46.65 4.18
7451 9353 4.361451 AACATACCGATACGTTCGTCTT 57.639 40.909 15.48 5.79 46.65 3.01
7452 9354 3.945179 ACATACCGATACGTTCGTCTTC 58.055 45.455 15.48 0.18 46.65 2.87
7453 9355 3.374988 ACATACCGATACGTTCGTCTTCA 59.625 43.478 15.48 0.00 46.65 3.02
7454 9356 2.995466 ACCGATACGTTCGTCTTCAA 57.005 45.000 15.48 0.00 46.65 2.69
7455 9357 2.589014 ACCGATACGTTCGTCTTCAAC 58.411 47.619 15.48 0.00 46.65 3.18
7456 9358 1.916000 CCGATACGTTCGTCTTCAACC 59.084 52.381 15.48 0.00 46.65 3.77
7457 9359 1.916000 CGATACGTTCGTCTTCAACCC 59.084 52.381 0.00 0.00 43.01 4.11
7458 9360 2.265683 GATACGTTCGTCTTCAACCCC 58.734 52.381 0.00 0.00 0.00 4.95
7459 9361 1.331214 TACGTTCGTCTTCAACCCCT 58.669 50.000 0.00 0.00 0.00 4.79
7460 9362 0.033090 ACGTTCGTCTTCAACCCCTC 59.967 55.000 0.00 0.00 0.00 4.30
7461 9363 0.669625 CGTTCGTCTTCAACCCCTCC 60.670 60.000 0.00 0.00 0.00 4.30
7462 9364 0.321387 GTTCGTCTTCAACCCCTCCC 60.321 60.000 0.00 0.00 0.00 4.30
7463 9365 1.486145 TTCGTCTTCAACCCCTCCCC 61.486 60.000 0.00 0.00 0.00 4.81
7464 9366 1.918800 CGTCTTCAACCCCTCCCCT 60.919 63.158 0.00 0.00 0.00 4.79
7465 9367 1.900545 CGTCTTCAACCCCTCCCCTC 61.901 65.000 0.00 0.00 0.00 4.30
7466 9368 0.547954 GTCTTCAACCCCTCCCCTCT 60.548 60.000 0.00 0.00 0.00 3.69
7467 9369 1.098589 TCTTCAACCCCTCCCCTCTA 58.901 55.000 0.00 0.00 0.00 2.43
7468 9370 1.439543 TCTTCAACCCCTCCCCTCTAA 59.560 52.381 0.00 0.00 0.00 2.10
7469 9371 2.047296 TCTTCAACCCCTCCCCTCTAAT 59.953 50.000 0.00 0.00 0.00 1.73
7470 9372 2.680439 TCAACCCCTCCCCTCTAATT 57.320 50.000 0.00 0.00 0.00 1.40
7471 9373 3.807288 TCAACCCCTCCCCTCTAATTA 57.193 47.619 0.00 0.00 0.00 1.40
7472 9374 4.097017 TCAACCCCTCCCCTCTAATTAA 57.903 45.455 0.00 0.00 0.00 1.40
7473 9375 4.045022 TCAACCCCTCCCCTCTAATTAAG 58.955 47.826 0.00 0.00 0.00 1.85
7474 9376 3.786450 CAACCCCTCCCCTCTAATTAAGT 59.214 47.826 0.00 0.00 0.00 2.24
7475 9377 4.104051 ACCCCTCCCCTCTAATTAAGTT 57.896 45.455 0.00 0.00 0.00 2.66
7476 9378 4.455161 ACCCCTCCCCTCTAATTAAGTTT 58.545 43.478 0.00 0.00 0.00 2.66
7477 9379 4.477581 ACCCCTCCCCTCTAATTAAGTTTC 59.522 45.833 0.00 0.00 0.00 2.78
7478 9380 4.727332 CCCCTCCCCTCTAATTAAGTTTCT 59.273 45.833 0.00 0.00 0.00 2.52
7479 9381 5.193930 CCCCTCCCCTCTAATTAAGTTTCTT 59.806 44.000 0.00 0.00 0.00 2.52
7480 9382 6.358178 CCCTCCCCTCTAATTAAGTTTCTTC 58.642 44.000 0.00 0.00 0.00 2.87
7481 9383 6.358178 CCTCCCCTCTAATTAAGTTTCTTCC 58.642 44.000 0.00 0.00 0.00 3.46
7482 9384 6.158871 CCTCCCCTCTAATTAAGTTTCTTCCT 59.841 42.308 0.00 0.00 0.00 3.36
7483 9385 7.196637 TCCCCTCTAATTAAGTTTCTTCCTC 57.803 40.000 0.00 0.00 0.00 3.71
7484 9386 6.049790 CCCCTCTAATTAAGTTTCTTCCTCG 58.950 44.000 0.00 0.00 0.00 4.63
7485 9387 5.524281 CCCTCTAATTAAGTTTCTTCCTCGC 59.476 44.000 0.00 0.00 0.00 5.03
7486 9388 5.232414 CCTCTAATTAAGTTTCTTCCTCGCG 59.768 44.000 0.00 0.00 0.00 5.87
7487 9389 3.741805 AATTAAGTTTCTTCCTCGCGC 57.258 42.857 0.00 0.00 0.00 6.86
7488 9390 2.450609 TTAAGTTTCTTCCTCGCGCT 57.549 45.000 5.56 0.00 0.00 5.92
7489 9391 1.992170 TAAGTTTCTTCCTCGCGCTC 58.008 50.000 5.56 0.00 0.00 5.03
7490 9392 0.670854 AAGTTTCTTCCTCGCGCTCC 60.671 55.000 5.56 0.00 0.00 4.70
7491 9393 1.374252 GTTTCTTCCTCGCGCTCCA 60.374 57.895 5.56 0.00 0.00 3.86
7492 9394 1.374252 TTTCTTCCTCGCGCTCCAC 60.374 57.895 5.56 0.00 0.00 4.02
7493 9395 2.781595 TTTCTTCCTCGCGCTCCACC 62.782 60.000 5.56 0.00 0.00 4.61
7494 9396 3.764466 CTTCCTCGCGCTCCACCT 61.764 66.667 5.56 0.00 0.00 4.00
7495 9397 3.997064 CTTCCTCGCGCTCCACCTG 62.997 68.421 5.56 0.00 0.00 4.00
7497 9399 4.504916 CCTCGCGCTCCACCTGAG 62.505 72.222 5.56 2.17 44.47 3.35
7498 9400 3.443925 CTCGCGCTCCACCTGAGA 61.444 66.667 5.56 0.00 44.42 3.27
7499 9401 3.408501 CTCGCGCTCCACCTGAGAG 62.409 68.421 5.56 0.00 44.42 3.20
7500 9402 4.504916 CGCGCTCCACCTGAGAGG 62.505 72.222 5.56 0.00 44.42 3.69
7509 9411 4.286447 CCTGAGAGGTCCTAGCCC 57.714 66.667 0.00 0.00 0.00 5.19
7510 9412 1.311403 CCTGAGAGGTCCTAGCCCA 59.689 63.158 0.00 0.00 0.00 5.36
7511 9413 0.758685 CCTGAGAGGTCCTAGCCCAG 60.759 65.000 0.00 0.00 0.00 4.45
7512 9414 1.381872 TGAGAGGTCCTAGCCCAGC 60.382 63.158 0.00 0.00 0.00 4.85
7513 9415 2.041405 AGAGGTCCTAGCCCAGCC 60.041 66.667 0.00 0.00 0.00 4.85
7514 9416 2.041405 GAGGTCCTAGCCCAGCCT 60.041 66.667 0.00 0.00 0.00 4.58
7515 9417 2.041405 AGGTCCTAGCCCAGCCTC 60.041 66.667 0.00 0.00 0.00 4.70
7516 9418 3.541713 GGTCCTAGCCCAGCCTCG 61.542 72.222 0.00 0.00 0.00 4.63
7517 9419 3.541713 GTCCTAGCCCAGCCTCGG 61.542 72.222 0.00 0.00 0.00 4.63
7518 9420 4.075793 TCCTAGCCCAGCCTCGGT 62.076 66.667 0.00 0.00 0.00 4.69
7519 9421 3.854669 CCTAGCCCAGCCTCGGTG 61.855 72.222 0.00 0.00 0.00 4.94
7520 9422 3.077556 CTAGCCCAGCCTCGGTGT 61.078 66.667 0.00 0.00 0.00 4.16
7521 9423 3.376935 CTAGCCCAGCCTCGGTGTG 62.377 68.421 0.00 0.00 0.00 3.82
7533 9435 4.760047 GGTGTGGCCGACGCTCAT 62.760 66.667 15.41 0.00 35.23 2.90
7534 9436 3.188786 GTGTGGCCGACGCTCATC 61.189 66.667 0.00 0.00 34.44 2.92
7535 9437 4.794439 TGTGGCCGACGCTCATCG 62.794 66.667 0.00 0.00 45.38 3.84
7558 9460 4.717313 GCTCCCCACGTTGTCCCC 62.717 72.222 0.00 0.00 0.00 4.81
7559 9461 3.246112 CTCCCCACGTTGTCCCCA 61.246 66.667 0.00 0.00 0.00 4.96
7560 9462 3.546714 CTCCCCACGTTGTCCCCAC 62.547 68.421 0.00 0.00 0.00 4.61
7561 9463 4.653888 CCCCACGTTGTCCCCACC 62.654 72.222 0.00 0.00 0.00 4.61
7562 9464 3.566210 CCCACGTTGTCCCCACCT 61.566 66.667 0.00 0.00 0.00 4.00
7563 9465 2.513895 CCACGTTGTCCCCACCTT 59.486 61.111 0.00 0.00 0.00 3.50
7564 9466 1.152839 CCACGTTGTCCCCACCTTT 60.153 57.895 0.00 0.00 0.00 3.11
7565 9467 0.108963 CCACGTTGTCCCCACCTTTA 59.891 55.000 0.00 0.00 0.00 1.85
7566 9468 1.519408 CACGTTGTCCCCACCTTTAG 58.481 55.000 0.00 0.00 0.00 1.85
7567 9469 0.250597 ACGTTGTCCCCACCTTTAGC 60.251 55.000 0.00 0.00 0.00 3.09
7568 9470 0.958876 CGTTGTCCCCACCTTTAGCC 60.959 60.000 0.00 0.00 0.00 3.93
7569 9471 0.111639 GTTGTCCCCACCTTTAGCCA 59.888 55.000 0.00 0.00 0.00 4.75
7570 9472 1.080638 TTGTCCCCACCTTTAGCCAT 58.919 50.000 0.00 0.00 0.00 4.40
7571 9473 0.331278 TGTCCCCACCTTTAGCCATG 59.669 55.000 0.00 0.00 0.00 3.66
7572 9474 0.331616 GTCCCCACCTTTAGCCATGT 59.668 55.000 0.00 0.00 0.00 3.21
7573 9475 0.331278 TCCCCACCTTTAGCCATGTG 59.669 55.000 0.00 0.00 0.00 3.21
7574 9476 1.322538 CCCCACCTTTAGCCATGTGC 61.323 60.000 0.00 0.00 41.71 4.57
7583 9485 2.747460 GCCATGTGCTGCGAGGAA 60.747 61.111 0.00 0.00 36.87 3.36
7584 9486 2.117156 GCCATGTGCTGCGAGGAAT 61.117 57.895 0.00 0.00 36.87 3.01
7585 9487 1.725665 CCATGTGCTGCGAGGAATG 59.274 57.895 0.00 0.00 0.00 2.67
7586 9488 1.721664 CCATGTGCTGCGAGGAATGG 61.722 60.000 0.00 0.11 0.00 3.16
7587 9489 1.452651 ATGTGCTGCGAGGAATGGG 60.453 57.895 0.00 0.00 0.00 4.00
7588 9490 1.913951 ATGTGCTGCGAGGAATGGGA 61.914 55.000 0.00 0.00 0.00 4.37
7589 9491 1.817099 GTGCTGCGAGGAATGGGAG 60.817 63.158 0.00 0.00 0.00 4.30
7590 9492 1.989508 TGCTGCGAGGAATGGGAGA 60.990 57.895 0.00 0.00 0.00 3.71
7591 9493 1.227497 GCTGCGAGGAATGGGAGAG 60.227 63.158 0.00 0.00 0.00 3.20
7592 9494 1.227497 CTGCGAGGAATGGGAGAGC 60.227 63.158 0.00 0.00 0.00 4.09
7593 9495 2.110006 GCGAGGAATGGGAGAGCC 59.890 66.667 0.00 0.00 0.00 4.70
7594 9496 2.439104 GCGAGGAATGGGAGAGCCT 61.439 63.158 0.00 0.00 0.00 4.58
7595 9497 1.115930 GCGAGGAATGGGAGAGCCTA 61.116 60.000 0.00 0.00 0.00 3.93
7596 9498 1.638529 CGAGGAATGGGAGAGCCTAT 58.361 55.000 0.00 0.00 36.87 2.57
7597 9499 2.808919 CGAGGAATGGGAGAGCCTATA 58.191 52.381 0.00 0.00 33.71 1.31
7598 9500 2.757868 CGAGGAATGGGAGAGCCTATAG 59.242 54.545 0.00 0.00 33.71 1.31
7599 9501 3.562393 CGAGGAATGGGAGAGCCTATAGA 60.562 52.174 0.00 0.00 33.71 1.98
7600 9502 4.619679 GAGGAATGGGAGAGCCTATAGAT 58.380 47.826 0.00 0.00 33.71 1.98
7601 9503 4.619679 AGGAATGGGAGAGCCTATAGATC 58.380 47.826 0.00 0.00 33.71 2.75
7602 9504 4.046489 AGGAATGGGAGAGCCTATAGATCA 59.954 45.833 0.00 0.00 33.71 2.92
7603 9505 4.780021 GGAATGGGAGAGCCTATAGATCAA 59.220 45.833 0.00 0.00 33.71 2.57
7604 9506 5.104982 GGAATGGGAGAGCCTATAGATCAAG 60.105 48.000 0.00 0.00 33.71 3.02
7605 9507 3.169099 TGGGAGAGCCTATAGATCAAGC 58.831 50.000 0.00 0.00 0.00 4.01
7606 9508 3.169099 GGGAGAGCCTATAGATCAAGCA 58.831 50.000 0.00 0.00 0.00 3.91
7607 9509 3.056179 GGGAGAGCCTATAGATCAAGCAC 60.056 52.174 0.00 0.00 0.00 4.40
7608 9510 3.576118 GGAGAGCCTATAGATCAAGCACA 59.424 47.826 0.00 0.00 0.00 4.57
7609 9511 4.222588 GGAGAGCCTATAGATCAAGCACAT 59.777 45.833 0.00 0.00 0.00 3.21
7610 9512 5.420421 GGAGAGCCTATAGATCAAGCACATA 59.580 44.000 0.00 0.00 0.00 2.29
7611 9513 6.071108 GGAGAGCCTATAGATCAAGCACATAA 60.071 42.308 0.00 0.00 0.00 1.90
7612 9514 7.364585 GGAGAGCCTATAGATCAAGCACATAAT 60.365 40.741 0.00 0.00 0.00 1.28
7613 9515 7.915930 AGAGCCTATAGATCAAGCACATAATT 58.084 34.615 0.00 0.00 0.00 1.40
7614 9516 8.040132 AGAGCCTATAGATCAAGCACATAATTC 58.960 37.037 0.00 0.00 0.00 2.17
7615 9517 7.915930 AGCCTATAGATCAAGCACATAATTCT 58.084 34.615 0.00 0.00 0.00 2.40
7616 9518 8.381636 AGCCTATAGATCAAGCACATAATTCTT 58.618 33.333 0.00 0.00 0.00 2.52
7617 9519 9.007901 GCCTATAGATCAAGCACATAATTCTTT 57.992 33.333 0.00 0.00 0.00 2.52
7668 9570 0.181350 AGATCTTCATCCAACGGCCC 59.819 55.000 0.00 0.00 0.00 5.80
7679 9581 1.821753 CCAACGGCCCAAAACATATCA 59.178 47.619 0.00 0.00 0.00 2.15
7704 9606 8.997323 CAATATGTTCATCTTCAACCTCCTATC 58.003 37.037 0.00 0.00 0.00 2.08
7714 9616 0.261991 ACCTCCTATCCTTCCTCGCA 59.738 55.000 0.00 0.00 0.00 5.10
7754 9656 0.749454 CCTAAGTGCATGCCTCCACC 60.749 60.000 16.68 0.00 32.48 4.61
7756 9658 2.210144 TAAGTGCATGCCTCCACCCC 62.210 60.000 16.68 0.00 32.48 4.95
7805 9720 0.465460 GCTGAGTTGTTGTCACCCCA 60.465 55.000 0.00 0.00 0.00 4.96
7811 9726 2.203582 GTTGTCACCCCAACCCCC 60.204 66.667 0.00 0.00 39.01 5.40
7812 9727 2.370403 TTGTCACCCCAACCCCCT 60.370 61.111 0.00 0.00 0.00 4.79
7813 9728 2.466186 TTGTCACCCCAACCCCCTC 61.466 63.158 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 7.485277 ACGTTGTCGATAATGAAGACTTTCTAG 59.515 37.037 19.49 0.00 40.62 2.43
13 14 7.310664 ACGTTGTCGATAATGAAGACTTTCTA 58.689 34.615 19.49 0.00 40.62 2.10
14 15 6.157211 ACGTTGTCGATAATGAAGACTTTCT 58.843 36.000 19.49 0.00 40.62 2.52
15 16 6.390987 ACGTTGTCGATAATGAAGACTTTC 57.609 37.500 19.49 0.00 40.62 2.62
36 37 3.622163 TGGTGCGGTTATTATGGTTAACG 59.378 43.478 0.00 0.00 31.66 3.18
146 148 3.066064 TGTTTTGTGGTGTTTGGATCTCG 59.934 43.478 0.00 0.00 0.00 4.04
151 153 3.533606 CCATGTTTTGTGGTGTTTGGA 57.466 42.857 0.00 0.00 31.96 3.53
193 195 3.612251 GCCTCATGCTGCCAATGT 58.388 55.556 0.00 0.00 36.87 2.71
225 227 3.971245 AAAGCCAGGTTCACACAAAAA 57.029 38.095 0.00 0.00 0.00 1.94
226 228 4.020543 AGTAAAGCCAGGTTCACACAAAA 58.979 39.130 0.00 0.00 0.00 2.44
230 232 3.735591 TGTAGTAAAGCCAGGTTCACAC 58.264 45.455 0.00 0.00 0.00 3.82
275 277 4.174305 GGATATGCGGGGTTTGGG 57.826 61.111 0.00 0.00 0.00 4.12
682 684 9.880157 CAAAATGAAGGATTGGAGAATACAAAT 57.120 29.630 0.00 0.00 0.00 2.32
699 701 4.053295 CTGGTGCCTCAAACAAAATGAAG 58.947 43.478 0.00 0.00 0.00 3.02
795 797 0.582005 AAAACGCAAGCTGTCGAGTC 59.418 50.000 13.81 0.00 45.62 3.36
797 799 3.825812 AAAAACGCAAGCTGTCGAG 57.174 47.368 13.81 0.00 45.62 4.04
825 827 2.098443 GCTGTCGGGTTTGTCTCAAAAA 59.902 45.455 0.00 0.00 0.00 1.94
826 828 1.673920 GCTGTCGGGTTTGTCTCAAAA 59.326 47.619 0.00 0.00 0.00 2.44
827 829 1.134220 AGCTGTCGGGTTTGTCTCAAA 60.134 47.619 0.00 0.00 0.00 2.69
828 830 0.468226 AGCTGTCGGGTTTGTCTCAA 59.532 50.000 0.00 0.00 0.00 3.02
829 831 0.468226 AAGCTGTCGGGTTTGTCTCA 59.532 50.000 0.00 0.00 30.77 3.27
830 832 0.868406 CAAGCTGTCGGGTTTGTCTC 59.132 55.000 0.00 0.00 32.86 3.36
831 833 1.166531 GCAAGCTGTCGGGTTTGTCT 61.167 55.000 0.00 0.00 32.86 3.41
832 834 1.282875 GCAAGCTGTCGGGTTTGTC 59.717 57.895 0.00 0.00 32.86 3.18
833 835 2.542907 CGCAAGCTGTCGGGTTTGT 61.543 57.895 0.00 0.00 32.86 2.83
834 836 1.225376 TACGCAAGCTGTCGGGTTTG 61.225 55.000 11.74 0.00 45.62 2.93
841 843 2.418628 TGCCTTTATTACGCAAGCTGTC 59.581 45.455 0.00 0.00 45.62 3.51
848 850 1.697772 CGCGGTGCCTTTATTACGCA 61.698 55.000 0.00 0.00 46.47 5.24
873 875 1.766461 CTCCTCTTATGGGGGCCGT 60.766 63.158 0.00 0.00 0.00 5.68
888 890 2.158740 GGAGACTTCTAATTGGGCCTCC 60.159 54.545 4.53 0.00 33.17 4.30
904 906 0.817013 CTGCTGTGGAGAGAGGAGAC 59.183 60.000 0.00 0.00 33.14 3.36
917 920 4.996434 GCGCACCCACTCTGCTGT 62.996 66.667 0.30 0.00 32.03 4.40
929 932 4.395583 GCTTGACTGGCTGCGCAC 62.396 66.667 5.66 3.30 0.00 5.34
1070 1079 0.313672 CTCGATGGAGAGCAGTAGGC 59.686 60.000 0.00 0.00 43.27 3.93
1198 1207 5.712152 ACTGCTCCGAAAATGAAAAGAAT 57.288 34.783 0.00 0.00 0.00 2.40
1315 1324 2.032634 GCACGCCCAAATCAGTCGA 61.033 57.895 0.00 0.00 0.00 4.20
1393 1402 7.387643 ACCTAAAAGTCTAAGAAAGCTCGAAT 58.612 34.615 0.00 0.00 0.00 3.34
1482 1500 5.735766 TGAAGTATCGACAGAGAAGAGAGA 58.264 41.667 0.00 0.00 0.00 3.10
1483 1501 6.429791 TTGAAGTATCGACAGAGAAGAGAG 57.570 41.667 0.00 0.00 0.00 3.20
1484 1502 6.819397 TTTGAAGTATCGACAGAGAAGAGA 57.181 37.500 0.00 0.00 0.00 3.10
1485 1503 7.219917 GTGATTTGAAGTATCGACAGAGAAGAG 59.780 40.741 0.00 0.00 0.00 2.85
1486 1504 7.030165 GTGATTTGAAGTATCGACAGAGAAGA 58.970 38.462 0.00 0.00 0.00 2.87
1487 1505 7.032580 AGTGATTTGAAGTATCGACAGAGAAG 58.967 38.462 0.00 0.00 0.00 2.85
1488 1506 6.925211 AGTGATTTGAAGTATCGACAGAGAA 58.075 36.000 0.00 0.00 0.00 2.87
1587 1611 1.152963 AGTTGTCACACACCCTGCC 60.153 57.895 0.00 0.00 0.00 4.85
1674 1698 7.769272 TTCCACAACAAAACTTCAATCAATC 57.231 32.000 0.00 0.00 0.00 2.67
1868 1892 2.139118 GAGTGGAAGAAGCGCCATATC 58.861 52.381 2.29 0.00 36.41 1.63
1883 1907 7.716998 AGCTGATTTGGTAATATAACAGAGTGG 59.283 37.037 0.00 0.00 0.00 4.00
1955 1982 6.324819 ACAGAACAAAGTTTCATTGACACAG 58.675 36.000 5.79 0.00 0.00 3.66
1972 1999 2.035449 CACCGAGTCCAGTTACAGAACA 59.965 50.000 0.00 0.00 38.10 3.18
2152 2179 6.873605 TCACAATATGTTCTTGTCACTGTAGG 59.126 38.462 0.00 0.00 34.69 3.18
2239 2266 1.079405 CGCTTCCAAACGGAGCCTA 60.079 57.895 0.00 0.00 32.88 3.93
2571 2630 6.183360 GGTGGGTTTGGTTCCAAAGTATTTTA 60.183 38.462 16.05 0.00 35.03 1.52
2583 2642 1.618343 CAATGAGGGTGGGTTTGGTTC 59.382 52.381 0.00 0.00 0.00 3.62
2697 2756 2.892425 GCCGATTCAGACGCCCTG 60.892 66.667 0.00 0.00 44.27 4.45
2766 2825 3.072476 AGTCTTTCCCGTGAAGATTTCCA 59.928 43.478 0.00 0.00 35.74 3.53
2773 2832 0.035458 AGCCAGTCTTTCCCGTGAAG 59.965 55.000 0.00 0.00 0.00 3.02
2834 2896 0.391130 TCGCTTGGATTGGAGGTTCG 60.391 55.000 0.00 0.00 0.00 3.95
2863 2925 1.283321 AGAGGAGGAAGGGCACAAATC 59.717 52.381 0.00 0.00 0.00 2.17
2864 2926 1.283321 GAGAGGAGGAAGGGCACAAAT 59.717 52.381 0.00 0.00 0.00 2.32
2865 2927 0.693049 GAGAGGAGGAAGGGCACAAA 59.307 55.000 0.00 0.00 0.00 2.83
2920 3031 1.488812 ACAAGTACAGGAGCCACACAA 59.511 47.619 0.00 0.00 0.00 3.33
2953 3069 0.326264 GAAAGAGCAGAGGAGGGCAA 59.674 55.000 0.00 0.00 0.00 4.52
2984 3100 1.548357 GGGAGAAGCAGAGCACTGGA 61.548 60.000 13.26 0.00 43.62 3.86
2996 3112 4.783055 TCTAGCTACACTACTGGGAGAAG 58.217 47.826 0.00 0.00 0.00 2.85
3006 3122 3.181475 GCCAAGCACATCTAGCTACACTA 60.181 47.826 0.00 0.00 42.53 2.74
3043 3159 2.673775 TTTGGGAGGAAACAGATGCA 57.326 45.000 0.00 0.00 0.00 3.96
3100 3216 2.815503 GCCTTACCGCCTTAAAAACTGA 59.184 45.455 0.00 0.00 0.00 3.41
3102 3218 1.808343 CGCCTTACCGCCTTAAAAACT 59.192 47.619 0.00 0.00 0.00 2.66
4548 4664 3.549794 GCACTCTAAATCTGGCCAGAAT 58.450 45.455 38.02 28.52 41.36 2.40
4838 4955 8.306761 ACGACATATGAATCAGCATAGAACATA 58.693 33.333 10.38 0.00 34.50 2.29
4855 4972 7.770801 TCAGGAAATAAACAGACGACATATG 57.229 36.000 0.00 0.00 0.00 1.78
5028 5145 6.468333 TGCCACATTTGATACAAATGCTAT 57.532 33.333 26.44 12.42 40.35 2.97
5343 5543 7.094205 ACAGTTATTTTCCCATCATCACTGAAC 60.094 37.037 0.00 0.00 34.37 3.18
5385 5585 6.590656 AGTACCATTCCATCCTTCCAATTA 57.409 37.500 0.00 0.00 0.00 1.40
5520 5720 1.278127 GTCGTTTCTCCCCATTCTCCA 59.722 52.381 0.00 0.00 0.00 3.86
5735 5935 4.021544 ACCAAGTGAAGAAACTGCAAAACA 60.022 37.500 0.00 0.00 0.00 2.83
5820 6020 3.386078 CAGGAGCTACAAGCATAGGAGAA 59.614 47.826 0.00 0.00 45.56 2.87
5869 6069 6.279882 CAGACTTCAGAGAGACAAAACTTCT 58.720 40.000 0.00 0.00 0.00 2.85
6151 6351 6.394345 AAACAGGATTACCTCTTCATCCTT 57.606 37.500 0.00 0.00 43.77 3.36
6249 6449 1.390565 ACATTACGAGACGGAGGGAG 58.609 55.000 0.00 0.00 0.00 4.30
6251 6451 2.947652 TCTTACATTACGAGACGGAGGG 59.052 50.000 0.00 0.00 0.00 4.30
6252 6452 3.950078 GTCTTACATTACGAGACGGAGG 58.050 50.000 0.00 0.00 31.54 4.30
6299 6499 5.122711 CCGTCCCATAATGTAAGACGTTTTT 59.877 40.000 9.63 0.00 46.62 1.94
6300 6500 4.632688 CCGTCCCATAATGTAAGACGTTTT 59.367 41.667 9.63 0.00 46.62 2.43
6301 6501 4.081531 TCCGTCCCATAATGTAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
6302 6502 3.448301 TCCGTCCCATAATGTAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
6303 6503 3.025978 TCCGTCCCATAATGTAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
6305 6505 3.244112 CCCTCCGTCCCATAATGTAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
6306 6506 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
6307 6507 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
6308 6508 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
6309 6509 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
6310 6510 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
6311 6511 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
6312 6512 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
6313 6513 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
6314 6514 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
6315 6515 0.338814 AACTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00
6316 6516 0.324091 GAACTACTCCCTCCGTCCCA 60.324 60.000 0.00 0.00 0.00 4.37
6317 6517 0.324091 TGAACTACTCCCTCCGTCCC 60.324 60.000 0.00 0.00 0.00 4.46
6318 6518 1.777941 ATGAACTACTCCCTCCGTCC 58.222 55.000 0.00 0.00 0.00 4.79
6319 6519 3.243002 CGTTATGAACTACTCCCTCCGTC 60.243 52.174 0.00 0.00 0.00 4.79
6320 6520 2.686915 CGTTATGAACTACTCCCTCCGT 59.313 50.000 0.00 0.00 0.00 4.69
6321 6521 2.686915 ACGTTATGAACTACTCCCTCCG 59.313 50.000 0.00 0.00 0.00 4.63
6322 6522 4.401837 AGAACGTTATGAACTACTCCCTCC 59.598 45.833 0.00 0.00 0.00 4.30
6323 6523 5.579564 AGAACGTTATGAACTACTCCCTC 57.420 43.478 0.00 0.00 0.00 4.30
6324 6524 5.245526 ACAAGAACGTTATGAACTACTCCCT 59.754 40.000 17.62 0.00 0.00 4.20
6325 6525 5.476614 ACAAGAACGTTATGAACTACTCCC 58.523 41.667 17.62 0.00 0.00 4.30
6326 6526 7.311408 ACTACAAGAACGTTATGAACTACTCC 58.689 38.462 17.62 0.00 0.00 3.85
6327 6527 8.739649 AACTACAAGAACGTTATGAACTACTC 57.260 34.615 17.62 0.00 0.00 2.59
6328 6528 8.355169 TGAACTACAAGAACGTTATGAACTACT 58.645 33.333 17.62 0.00 0.00 2.57
6329 6529 8.511465 TGAACTACAAGAACGTTATGAACTAC 57.489 34.615 17.62 8.35 0.00 2.73
6330 6530 9.701098 AATGAACTACAAGAACGTTATGAACTA 57.299 29.630 17.62 2.63 0.00 2.24
6331 6531 8.603242 AATGAACTACAAGAACGTTATGAACT 57.397 30.769 17.62 0.92 0.00 3.01
6332 6532 9.103048 CAAATGAACTACAAGAACGTTATGAAC 57.897 33.333 17.62 0.00 0.00 3.18
6333 6533 7.801315 GCAAATGAACTACAAGAACGTTATGAA 59.199 33.333 17.62 0.00 0.00 2.57
6334 6534 7.041712 TGCAAATGAACTACAAGAACGTTATGA 60.042 33.333 17.62 3.98 0.00 2.15
6448 6648 4.744570 CATAGTGTCGTGGTATGAACAGT 58.255 43.478 0.00 0.00 0.00 3.55
6535 6735 1.278699 TCAGATGTGTAGTGCATGGCA 59.721 47.619 0.00 0.00 35.60 4.92
6671 6896 5.686771 GCGTCAGGCTCAATTTTAAATTC 57.313 39.130 0.00 0.00 39.11 2.17
6702 6927 5.542779 AGAGATAAAGTGCAACGAAACTCT 58.457 37.500 0.00 0.00 45.86 3.24
6761 6986 6.425210 TCGTCATCTTCATCAAATCCCTAT 57.575 37.500 0.00 0.00 0.00 2.57
6779 7004 6.212888 TCTTCTTCATCTTCATCATCGTCA 57.787 37.500 0.00 0.00 0.00 4.35
6892 7117 1.073923 GCTTTTCAGTCCCCAGGAGAA 59.926 52.381 0.00 0.00 29.39 2.87
6968 7196 4.213564 AGTTCCCACAGATCAAGCTTAG 57.786 45.455 0.00 0.00 0.00 2.18
6973 7201 5.067674 TCAAAACAAGTTCCCACAGATCAAG 59.932 40.000 0.00 0.00 0.00 3.02
7030 7258 8.623903 ACAATATACTTTGAAGTGCCACATATG 58.376 33.333 6.64 0.00 40.07 1.78
7267 7497 3.849911 TCTAGCTTTCATCAACACCTCG 58.150 45.455 0.00 0.00 0.00 4.63
7396 9298 8.352942 GTTCAGGATAAAAGTGACTGACAAAAT 58.647 33.333 0.00 0.00 37.86 1.82
7397 9299 7.466725 CGTTCAGGATAAAAGTGACTGACAAAA 60.467 37.037 0.00 0.00 37.86 2.44
7398 9300 6.018262 CGTTCAGGATAAAAGTGACTGACAAA 60.018 38.462 0.00 0.00 37.86 2.83
7399 9301 5.465390 CGTTCAGGATAAAAGTGACTGACAA 59.535 40.000 0.00 0.00 37.86 3.18
7400 9302 4.988540 CGTTCAGGATAAAAGTGACTGACA 59.011 41.667 0.00 0.00 37.86 3.58
7401 9303 4.389077 CCGTTCAGGATAAAAGTGACTGAC 59.611 45.833 0.00 0.00 45.00 3.51
7402 9304 4.566004 CCGTTCAGGATAAAAGTGACTGA 58.434 43.478 0.00 0.00 45.00 3.41
7403 9305 3.125316 GCCGTTCAGGATAAAAGTGACTG 59.875 47.826 0.00 0.00 45.00 3.51
7404 9306 3.335579 GCCGTTCAGGATAAAAGTGACT 58.664 45.455 0.00 0.00 45.00 3.41
7405 9307 2.418976 GGCCGTTCAGGATAAAAGTGAC 59.581 50.000 0.00 0.00 45.00 3.67
7406 9308 2.617021 GGGCCGTTCAGGATAAAAGTGA 60.617 50.000 0.00 0.00 45.00 3.41
7407 9309 1.743394 GGGCCGTTCAGGATAAAAGTG 59.257 52.381 0.00 0.00 45.00 3.16
7408 9310 1.353022 TGGGCCGTTCAGGATAAAAGT 59.647 47.619 0.00 0.00 45.00 2.66
7409 9311 2.122783 TGGGCCGTTCAGGATAAAAG 57.877 50.000 0.00 0.00 45.00 2.27
7410 9312 2.588464 TTGGGCCGTTCAGGATAAAA 57.412 45.000 0.00 0.00 45.00 1.52
7411 9313 2.559231 GTTTTGGGCCGTTCAGGATAAA 59.441 45.455 0.00 0.00 45.00 1.40
7412 9314 2.164338 GTTTTGGGCCGTTCAGGATAA 58.836 47.619 0.00 0.00 45.00 1.75
7413 9315 1.074084 TGTTTTGGGCCGTTCAGGATA 59.926 47.619 0.00 0.00 45.00 2.59
7414 9316 0.178975 TGTTTTGGGCCGTTCAGGAT 60.179 50.000 0.00 0.00 45.00 3.24
7415 9317 0.178975 ATGTTTTGGGCCGTTCAGGA 60.179 50.000 0.00 0.00 45.00 3.86
7416 9318 1.201414 GTATGTTTTGGGCCGTTCAGG 59.799 52.381 0.00 0.00 44.97 3.86
7417 9319 1.201414 GGTATGTTTTGGGCCGTTCAG 59.799 52.381 0.00 0.00 0.00 3.02
7418 9320 1.249407 GGTATGTTTTGGGCCGTTCA 58.751 50.000 0.00 0.00 0.00 3.18
7419 9321 0.169451 CGGTATGTTTTGGGCCGTTC 59.831 55.000 0.00 0.00 37.87 3.95
7420 9322 0.250814 TCGGTATGTTTTGGGCCGTT 60.251 50.000 0.00 0.00 42.62 4.44
7421 9323 0.034863 ATCGGTATGTTTTGGGCCGT 60.035 50.000 0.00 0.00 42.62 5.68
7422 9324 1.600485 GTATCGGTATGTTTTGGGCCG 59.400 52.381 0.00 0.00 43.32 6.13
7423 9325 1.600485 CGTATCGGTATGTTTTGGGCC 59.400 52.381 0.00 0.00 0.00 5.80
7424 9326 2.282407 ACGTATCGGTATGTTTTGGGC 58.718 47.619 0.00 0.00 0.00 5.36
7425 9327 4.525411 GAACGTATCGGTATGTTTTGGG 57.475 45.455 14.30 0.00 39.52 4.12
7438 9340 2.094338 AGGGGTTGAAGACGAACGTATC 60.094 50.000 0.00 3.11 0.00 2.24
7439 9341 1.897802 AGGGGTTGAAGACGAACGTAT 59.102 47.619 0.00 0.00 0.00 3.06
7440 9342 1.270550 GAGGGGTTGAAGACGAACGTA 59.729 52.381 0.00 0.00 0.00 3.57
7441 9343 0.033090 GAGGGGTTGAAGACGAACGT 59.967 55.000 0.00 0.00 0.00 3.99
7442 9344 0.669625 GGAGGGGTTGAAGACGAACG 60.670 60.000 0.00 0.00 0.00 3.95
7443 9345 0.321387 GGGAGGGGTTGAAGACGAAC 60.321 60.000 0.00 0.00 0.00 3.95
7444 9346 1.486145 GGGGAGGGGTTGAAGACGAA 61.486 60.000 0.00 0.00 0.00 3.85
7445 9347 1.916777 GGGGAGGGGTTGAAGACGA 60.917 63.158 0.00 0.00 0.00 4.20
7446 9348 1.900545 GAGGGGAGGGGTTGAAGACG 61.901 65.000 0.00 0.00 0.00 4.18
7447 9349 0.547954 AGAGGGGAGGGGTTGAAGAC 60.548 60.000 0.00 0.00 0.00 3.01
7448 9350 1.098589 TAGAGGGGAGGGGTTGAAGA 58.901 55.000 0.00 0.00 0.00 2.87
7449 9351 1.966845 TTAGAGGGGAGGGGTTGAAG 58.033 55.000 0.00 0.00 0.00 3.02
7450 9352 2.680439 ATTAGAGGGGAGGGGTTGAA 57.320 50.000 0.00 0.00 0.00 2.69
7451 9353 2.680439 AATTAGAGGGGAGGGGTTGA 57.320 50.000 0.00 0.00 0.00 3.18
7452 9354 3.786450 ACTTAATTAGAGGGGAGGGGTTG 59.214 47.826 0.00 0.00 0.00 3.77
7453 9355 4.104051 ACTTAATTAGAGGGGAGGGGTT 57.896 45.455 0.00 0.00 0.00 4.11
7454 9356 3.816967 ACTTAATTAGAGGGGAGGGGT 57.183 47.619 0.00 0.00 0.00 4.95
7455 9357 4.727332 AGAAACTTAATTAGAGGGGAGGGG 59.273 45.833 0.00 0.00 0.00 4.79
7456 9358 5.977821 AGAAACTTAATTAGAGGGGAGGG 57.022 43.478 0.00 0.00 0.00 4.30
7457 9359 6.158871 AGGAAGAAACTTAATTAGAGGGGAGG 59.841 42.308 0.00 0.00 0.00 4.30
7458 9360 7.201702 AGGAAGAAACTTAATTAGAGGGGAG 57.798 40.000 0.00 0.00 0.00 4.30
7459 9361 6.127140 CGAGGAAGAAACTTAATTAGAGGGGA 60.127 42.308 0.00 0.00 0.00 4.81
7460 9362 6.049790 CGAGGAAGAAACTTAATTAGAGGGG 58.950 44.000 0.00 0.00 0.00 4.79
7461 9363 5.524281 GCGAGGAAGAAACTTAATTAGAGGG 59.476 44.000 0.00 0.00 0.00 4.30
7462 9364 5.232414 CGCGAGGAAGAAACTTAATTAGAGG 59.768 44.000 0.00 0.00 0.00 3.69
7463 9365 5.276442 GCGCGAGGAAGAAACTTAATTAGAG 60.276 44.000 12.10 0.00 0.00 2.43
7464 9366 4.565564 GCGCGAGGAAGAAACTTAATTAGA 59.434 41.667 12.10 0.00 0.00 2.10
7465 9367 4.567159 AGCGCGAGGAAGAAACTTAATTAG 59.433 41.667 12.10 0.00 0.00 1.73
7466 9368 4.501071 AGCGCGAGGAAGAAACTTAATTA 58.499 39.130 12.10 0.00 0.00 1.40
7467 9369 3.335579 AGCGCGAGGAAGAAACTTAATT 58.664 40.909 12.10 0.00 0.00 1.40
7468 9370 2.930682 GAGCGCGAGGAAGAAACTTAAT 59.069 45.455 12.10 0.00 0.00 1.40
7469 9371 2.334838 GAGCGCGAGGAAGAAACTTAA 58.665 47.619 12.10 0.00 0.00 1.85
7470 9372 1.403780 GGAGCGCGAGGAAGAAACTTA 60.404 52.381 12.10 0.00 0.00 2.24
7471 9373 0.670854 GGAGCGCGAGGAAGAAACTT 60.671 55.000 12.10 0.00 0.00 2.66
7472 9374 1.079750 GGAGCGCGAGGAAGAAACT 60.080 57.895 12.10 0.00 0.00 2.66
7473 9375 1.374252 TGGAGCGCGAGGAAGAAAC 60.374 57.895 12.10 0.00 0.00 2.78
7474 9376 1.374252 GTGGAGCGCGAGGAAGAAA 60.374 57.895 12.10 0.00 0.00 2.52
7475 9377 2.261671 GTGGAGCGCGAGGAAGAA 59.738 61.111 12.10 0.00 0.00 2.52
7476 9378 3.760035 GGTGGAGCGCGAGGAAGA 61.760 66.667 12.10 0.00 0.00 2.87
7477 9379 3.764466 AGGTGGAGCGCGAGGAAG 61.764 66.667 12.10 0.00 0.00 3.46
7478 9380 4.069232 CAGGTGGAGCGCGAGGAA 62.069 66.667 12.10 0.00 0.00 3.36
7480 9382 4.504916 CTCAGGTGGAGCGCGAGG 62.505 72.222 12.10 0.00 36.69 4.63
7481 9383 3.408501 CTCTCAGGTGGAGCGCGAG 62.409 68.421 12.10 0.05 43.70 5.03
7482 9384 3.443925 CTCTCAGGTGGAGCGCGA 61.444 66.667 12.10 0.00 43.70 5.87
7483 9385 4.504916 CCTCTCAGGTGGAGCGCG 62.505 72.222 0.00 0.00 43.70 6.86
7492 9394 0.758685 CTGGGCTAGGACCTCTCAGG 60.759 65.000 0.00 0.00 42.49 3.86
7493 9395 1.398958 GCTGGGCTAGGACCTCTCAG 61.399 65.000 0.00 0.73 0.00 3.35
7494 9396 1.381872 GCTGGGCTAGGACCTCTCA 60.382 63.158 0.00 0.00 0.00 3.27
7495 9397 2.137528 GGCTGGGCTAGGACCTCTC 61.138 68.421 0.00 0.00 0.00 3.20
7496 9398 2.041405 GGCTGGGCTAGGACCTCT 60.041 66.667 0.00 0.00 0.00 3.69
7497 9399 2.041405 AGGCTGGGCTAGGACCTC 60.041 66.667 0.00 0.00 0.00 3.85
7498 9400 2.041405 GAGGCTGGGCTAGGACCT 60.041 66.667 0.00 0.00 0.00 3.85
7499 9401 3.541713 CGAGGCTGGGCTAGGACC 61.542 72.222 0.00 0.00 0.00 4.46
7500 9402 3.541713 CCGAGGCTGGGCTAGGAC 61.542 72.222 15.94 0.00 0.00 3.85
7501 9403 4.075793 ACCGAGGCTGGGCTAGGA 62.076 66.667 24.73 0.00 0.00 2.94
7502 9404 3.854669 CACCGAGGCTGGGCTAGG 61.855 72.222 16.21 18.49 0.00 3.02
7503 9405 3.077556 ACACCGAGGCTGGGCTAG 61.078 66.667 16.21 8.48 0.00 3.42
7504 9406 3.390521 CACACCGAGGCTGGGCTA 61.391 66.667 16.21 0.00 0.00 3.93
7516 9418 4.760047 ATGAGCGTCGGCCACACC 62.760 66.667 2.24 0.00 41.24 4.16
7517 9419 3.188786 GATGAGCGTCGGCCACAC 61.189 66.667 2.24 0.00 41.24 3.82
7518 9420 4.794439 CGATGAGCGTCGGCCACA 62.794 66.667 2.24 0.00 41.24 4.17
7541 9443 4.717313 GGGGACAACGTGGGGAGC 62.717 72.222 0.00 0.00 0.00 4.70
7542 9444 3.246112 TGGGGACAACGTGGGGAG 61.246 66.667 0.00 0.00 37.44 4.30
7543 9445 3.562232 GTGGGGACAACGTGGGGA 61.562 66.667 0.00 0.00 46.06 4.81
7544 9446 4.653888 GGTGGGGACAACGTGGGG 62.654 72.222 0.00 0.00 46.06 4.96
7551 9453 1.080638 ATGGCTAAAGGTGGGGACAA 58.919 50.000 0.00 0.00 46.06 3.18
7552 9454 0.331278 CATGGCTAAAGGTGGGGACA 59.669 55.000 0.00 0.00 38.70 4.02
7553 9455 0.331616 ACATGGCTAAAGGTGGGGAC 59.668 55.000 0.00 0.00 0.00 4.46
7554 9456 0.331278 CACATGGCTAAAGGTGGGGA 59.669 55.000 0.00 0.00 0.00 4.81
7555 9457 1.322538 GCACATGGCTAAAGGTGGGG 61.323 60.000 0.00 0.00 40.25 4.96
7556 9458 2.192605 GCACATGGCTAAAGGTGGG 58.807 57.895 0.00 0.00 40.25 4.61
7566 9468 2.117156 ATTCCTCGCAGCACATGGC 61.117 57.895 0.00 0.00 45.30 4.40
7567 9469 1.721664 CCATTCCTCGCAGCACATGG 61.722 60.000 0.00 0.00 0.00 3.66
7568 9470 1.721664 CCCATTCCTCGCAGCACATG 61.722 60.000 0.00 0.00 0.00 3.21
7569 9471 1.452651 CCCATTCCTCGCAGCACAT 60.453 57.895 0.00 0.00 0.00 3.21
7570 9472 2.046023 CCCATTCCTCGCAGCACA 60.046 61.111 0.00 0.00 0.00 4.57
7571 9473 1.817099 CTCCCATTCCTCGCAGCAC 60.817 63.158 0.00 0.00 0.00 4.40
7572 9474 1.964608 CTCTCCCATTCCTCGCAGCA 61.965 60.000 0.00 0.00 0.00 4.41
7573 9475 1.227497 CTCTCCCATTCCTCGCAGC 60.227 63.158 0.00 0.00 0.00 5.25
7574 9476 1.227497 GCTCTCCCATTCCTCGCAG 60.227 63.158 0.00 0.00 0.00 5.18
7575 9477 2.735772 GGCTCTCCCATTCCTCGCA 61.736 63.158 0.00 0.00 0.00 5.10
7576 9478 1.115930 TAGGCTCTCCCATTCCTCGC 61.116 60.000 0.00 0.00 35.39 5.03
7577 9479 1.638529 ATAGGCTCTCCCATTCCTCG 58.361 55.000 0.00 0.00 35.39 4.63
7578 9480 4.054359 TCTATAGGCTCTCCCATTCCTC 57.946 50.000 0.00 0.00 35.39 3.71
7579 9481 4.046489 TGATCTATAGGCTCTCCCATTCCT 59.954 45.833 0.00 0.00 35.39 3.36
7580 9482 4.357325 TGATCTATAGGCTCTCCCATTCC 58.643 47.826 0.00 0.00 35.39 3.01
7581 9483 5.626578 GCTTGATCTATAGGCTCTCCCATTC 60.627 48.000 0.00 0.00 35.39 2.67
7582 9484 4.224818 GCTTGATCTATAGGCTCTCCCATT 59.775 45.833 0.00 0.00 35.39 3.16
7583 9485 3.774216 GCTTGATCTATAGGCTCTCCCAT 59.226 47.826 0.00 0.00 35.39 4.00
7584 9486 3.169099 GCTTGATCTATAGGCTCTCCCA 58.831 50.000 0.00 0.00 35.39 4.37
7585 9487 3.056179 GTGCTTGATCTATAGGCTCTCCC 60.056 52.174 0.00 0.00 0.00 4.30
7586 9488 3.576118 TGTGCTTGATCTATAGGCTCTCC 59.424 47.826 0.00 0.00 0.00 3.71
7587 9489 4.862902 TGTGCTTGATCTATAGGCTCTC 57.137 45.455 0.00 0.00 0.00 3.20
7588 9490 6.924913 TTATGTGCTTGATCTATAGGCTCT 57.075 37.500 0.00 0.00 0.00 4.09
7589 9491 8.040132 AGAATTATGTGCTTGATCTATAGGCTC 58.960 37.037 0.00 0.00 0.00 4.70
7590 9492 7.915930 AGAATTATGTGCTTGATCTATAGGCT 58.084 34.615 0.00 0.00 0.00 4.58
7591 9493 8.558973 AAGAATTATGTGCTTGATCTATAGGC 57.441 34.615 0.00 0.00 0.00 3.93
7616 9518 9.763465 GGATAAAAGTGATCGACGAAATAAAAA 57.237 29.630 0.00 0.00 0.00 1.94
7617 9519 9.158233 AGGATAAAAGTGATCGACGAAATAAAA 57.842 29.630 0.00 0.00 0.00 1.52
7618 9520 8.600625 CAGGATAAAAGTGATCGACGAAATAAA 58.399 33.333 0.00 0.00 0.00 1.40
7619 9521 7.977293 TCAGGATAAAAGTGATCGACGAAATAA 59.023 33.333 0.00 0.00 0.00 1.40
7627 9529 7.640597 TCTAGTTCAGGATAAAAGTGATCGA 57.359 36.000 0.00 0.00 0.00 3.59
7679 9581 8.160106 GGATAGGAGGTTGAAGATGAACATATT 58.840 37.037 0.00 0.00 0.00 1.28
7687 9589 4.657969 AGGAAGGATAGGAGGTTGAAGATG 59.342 45.833 0.00 0.00 0.00 2.90
7688 9590 4.901927 AGGAAGGATAGGAGGTTGAAGAT 58.098 43.478 0.00 0.00 0.00 2.40
7704 9606 2.663188 GCGGCTATGCGAGGAAGG 60.663 66.667 0.00 0.00 0.00 3.46
7758 9660 2.434884 CAGTAGCCACCAGCCGTG 60.435 66.667 0.00 0.00 45.47 4.94
7759 9661 4.394712 GCAGTAGCCACCAGCCGT 62.395 66.667 0.00 0.00 45.47 5.68
7795 9709 2.370403 AGGGGGTTGGGGTGACAA 60.370 61.111 0.00 0.00 0.00 3.18
7805 9720 0.124522 TAATTGGAGGGGAGGGGGTT 59.875 55.000 0.00 0.00 0.00 4.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.