Multiple sequence alignment - TraesCS2B01G342000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G342000 chr2B 100.000 2772 0 0 1 2772 488008038 488010809 0.000000e+00 5120
1 TraesCS2B01G342000 chr2D 93.544 2788 114 35 1 2772 414400652 414403389 0.000000e+00 4091
2 TraesCS2B01G342000 chr2A 91.027 2006 129 26 814 2772 581577065 581579066 0.000000e+00 2660
3 TraesCS2B01G342000 chr2A 82.099 486 41 20 290 757 581566266 581566723 9.370000e-100 374
4 TraesCS2B01G342000 chr2A 95.045 222 7 4 1 221 581566018 581566236 2.040000e-91 346
5 TraesCS2B01G342000 chr5D 87.350 751 58 18 1044 1773 513978229 513978963 0.000000e+00 826
6 TraesCS2B01G342000 chr5A 85.874 807 67 28 989 1780 641733086 641733860 0.000000e+00 815
7 TraesCS2B01G342000 chr5B 92.574 404 30 0 1370 1773 644890066 644890469 5.150000e-162 580
8 TraesCS2B01G342000 chr5B 86.861 274 19 8 1044 1302 644889754 644890025 9.710000e-75 291
9 TraesCS2B01G342000 chr6B 85.484 186 23 3 1585 1770 39324848 39324667 1.010000e-44 191
10 TraesCS2B01G342000 chr3A 82.126 207 26 7 1598 1798 71235847 71235646 1.710000e-37 167


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G342000 chr2B 488008038 488010809 2771 False 5120.0 5120 100.0000 1 2772 1 chr2B.!!$F1 2771
1 TraesCS2B01G342000 chr2D 414400652 414403389 2737 False 4091.0 4091 93.5440 1 2772 1 chr2D.!!$F1 2771
2 TraesCS2B01G342000 chr2A 581577065 581579066 2001 False 2660.0 2660 91.0270 814 2772 1 chr2A.!!$F1 1958
3 TraesCS2B01G342000 chr2A 581566018 581566723 705 False 360.0 374 88.5720 1 757 2 chr2A.!!$F2 756
4 TraesCS2B01G342000 chr5D 513978229 513978963 734 False 826.0 826 87.3500 1044 1773 1 chr5D.!!$F1 729
5 TraesCS2B01G342000 chr5A 641733086 641733860 774 False 815.0 815 85.8740 989 1780 1 chr5A.!!$F1 791
6 TraesCS2B01G342000 chr5B 644889754 644890469 715 False 435.5 580 89.7175 1044 1773 2 chr5B.!!$F1 729

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
458 482 0.107654 GCCTTGGCTATCGTTGACCT 60.108 55.0 4.11 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2095 2274 0.882927 TTAACAGTCAGGTGTGCCGC 60.883 55.0 0.0 0.0 40.5 6.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
202 216 0.261696 GCTTCTCCCTCTCCCTCTCT 59.738 60.000 0.00 0.00 0.00 3.10
203 217 1.754201 GCTTCTCCCTCTCCCTCTCTC 60.754 61.905 0.00 0.00 0.00 3.20
204 218 0.930726 TTCTCCCTCTCCCTCTCTCC 59.069 60.000 0.00 0.00 0.00 3.71
222 236 2.045926 GGTGGCTGGCACTGTAGG 60.046 66.667 29.69 0.00 0.00 3.18
223 237 2.045926 GTGGCTGGCACTGTAGGG 60.046 66.667 25.10 0.00 0.00 3.53
224 238 3.329889 TGGCTGGCACTGTAGGGG 61.330 66.667 0.00 0.00 0.00 4.79
225 239 3.009115 GGCTGGCACTGTAGGGGA 61.009 66.667 0.00 0.00 0.00 4.81
226 240 2.586792 GCTGGCACTGTAGGGGAG 59.413 66.667 0.00 0.00 0.00 4.30
227 241 2.294078 GCTGGCACTGTAGGGGAGT 61.294 63.158 0.00 0.00 0.00 3.85
230 244 0.115547 TGGCACTGTAGGGGAGTGTA 59.884 55.000 0.00 0.00 42.47 2.90
231 245 0.535797 GGCACTGTAGGGGAGTGTAC 59.464 60.000 0.00 0.00 42.47 2.90
232 246 1.558233 GCACTGTAGGGGAGTGTACT 58.442 55.000 0.00 0.00 42.47 2.73
236 250 3.637229 CACTGTAGGGGAGTGTACTATGG 59.363 52.174 0.00 0.00 36.79 2.74
237 251 3.271490 ACTGTAGGGGAGTGTACTATGGT 59.729 47.826 0.00 0.00 0.00 3.55
238 252 3.890147 CTGTAGGGGAGTGTACTATGGTC 59.110 52.174 0.00 0.00 0.00 4.02
239 253 3.530564 TGTAGGGGAGTGTACTATGGTCT 59.469 47.826 0.00 0.00 0.00 3.85
243 257 3.627747 GGGGAGTGTACTATGGTCTCTGT 60.628 52.174 0.00 0.00 0.00 3.41
244 258 4.024670 GGGAGTGTACTATGGTCTCTGTT 58.975 47.826 0.00 0.00 0.00 3.16
245 259 4.098196 GGGAGTGTACTATGGTCTCTGTTC 59.902 50.000 0.00 0.00 0.00 3.18
247 261 4.673968 AGTGTACTATGGTCTCTGTTCCA 58.326 43.478 0.00 0.00 38.14 3.53
248 262 4.463186 AGTGTACTATGGTCTCTGTTCCAC 59.537 45.833 0.00 0.00 36.50 4.02
249 263 4.463186 GTGTACTATGGTCTCTGTTCCACT 59.537 45.833 0.00 0.00 36.50 4.00
250 264 5.651139 GTGTACTATGGTCTCTGTTCCACTA 59.349 44.000 0.00 0.00 36.50 2.74
251 265 5.886474 TGTACTATGGTCTCTGTTCCACTAG 59.114 44.000 0.00 0.00 36.50 2.57
252 266 4.282496 ACTATGGTCTCTGTTCCACTAGG 58.718 47.826 0.00 0.00 36.50 3.02
253 267 1.267121 TGGTCTCTGTTCCACTAGGC 58.733 55.000 0.00 0.00 33.74 3.93
254 268 1.267121 GGTCTCTGTTCCACTAGGCA 58.733 55.000 0.00 0.00 33.74 4.75
255 269 1.066787 GGTCTCTGTTCCACTAGGCAC 60.067 57.143 0.00 0.00 33.74 5.01
256 270 1.896465 GTCTCTGTTCCACTAGGCACT 59.104 52.381 0.00 0.00 46.37 4.40
257 271 1.895798 TCTCTGTTCCACTAGGCACTG 59.104 52.381 0.00 0.00 41.52 3.66
258 272 0.976641 TCTGTTCCACTAGGCACTGG 59.023 55.000 0.00 0.00 44.86 4.00
259 273 0.674895 CTGTTCCACTAGGCACTGGC 60.675 60.000 0.00 0.00 42.26 4.85
260 274 1.741770 GTTCCACTAGGCACTGGCG 60.742 63.158 0.00 0.00 42.26 5.69
261 275 1.911269 TTCCACTAGGCACTGGCGA 60.911 57.895 0.00 0.00 42.26 5.54
262 276 1.476845 TTCCACTAGGCACTGGCGAA 61.477 55.000 0.00 0.00 42.26 4.70
263 277 1.448540 CCACTAGGCACTGGCGAAG 60.449 63.158 0.00 2.08 42.26 3.79
280 294 3.920553 GCGTGTGCGTTCGTGTGT 61.921 61.111 0.00 0.00 40.81 3.72
281 295 2.054328 CGTGTGCGTTCGTGTGTG 60.054 61.111 0.00 0.00 0.00 3.82
282 296 2.794355 CGTGTGCGTTCGTGTGTGT 61.794 57.895 0.00 0.00 0.00 3.72
283 297 1.473066 CGTGTGCGTTCGTGTGTGTA 61.473 55.000 0.00 0.00 0.00 2.90
284 298 0.228742 GTGTGCGTTCGTGTGTGTAG 59.771 55.000 0.00 0.00 0.00 2.74
285 299 0.872451 TGTGCGTTCGTGTGTGTAGG 60.872 55.000 0.00 0.00 0.00 3.18
286 300 1.952133 TGCGTTCGTGTGTGTAGGC 60.952 57.895 0.00 0.00 0.00 3.93
293 307 3.671008 TCGTGTGTGTAGGCAGTAAAT 57.329 42.857 0.00 0.00 0.00 1.40
302 316 2.338577 AGGCAGTAAATAGCAGCAGG 57.661 50.000 0.00 0.00 0.00 4.85
323 337 2.360801 GTGAGGTCCTCTGCTCTATGTC 59.639 54.545 19.82 0.00 0.00 3.06
324 338 1.960689 GAGGTCCTCTGCTCTATGTCC 59.039 57.143 12.02 0.00 0.00 4.02
457 481 0.392461 TGCCTTGGCTATCGTTGACC 60.392 55.000 13.18 0.00 0.00 4.02
458 482 0.107654 GCCTTGGCTATCGTTGACCT 60.108 55.000 4.11 0.00 0.00 3.85
463 487 0.461961 GGCTATCGTTGACCTCTGCT 59.538 55.000 0.00 0.00 0.00 4.24
469 493 2.033141 TTGACCTCTGCTGGCTGC 59.967 61.111 9.67 9.67 43.25 5.25
536 560 1.766059 CCCCCTCCATGATCCGTCA 60.766 63.158 0.00 0.00 39.04 4.35
592 616 5.594317 AGCACTAAATGAGGTGAAAACTTGT 59.406 36.000 0.00 0.00 35.69 3.16
604 633 0.738389 AAACTTGTGTTCACGGCAGG 59.262 50.000 0.00 0.00 34.96 4.85
742 787 5.118286 AGAAAATGGGTGTGCTTCTTTTTG 58.882 37.500 0.00 0.00 0.00 2.44
792 838 9.114952 GTATTTCCTTCATAAGAGAAGAAAGGG 57.885 37.037 5.34 0.00 46.18 3.95
805 851 1.095600 GAAAGGGAAGAATGGCCGAC 58.904 55.000 0.00 0.00 0.00 4.79
815 861 0.537188 AATGGCCGACTGTGGAGTAG 59.463 55.000 0.00 0.00 30.16 2.57
824 870 0.817654 CTGTGGAGTAGGCACATCGA 59.182 55.000 0.00 0.00 0.00 3.59
837 883 3.549827 GGCACATCGACACAATTTGACAA 60.550 43.478 2.79 0.00 0.00 3.18
850 896 0.401395 TTGACAAGGTCCCCTCCAGT 60.401 55.000 0.00 0.00 30.89 4.00
975 1045 1.153107 CATCTTCCATCTGCCGCCA 60.153 57.895 0.00 0.00 0.00 5.69
1007 1077 4.340019 CACGGCGCACATGGCAAA 62.340 61.111 10.83 0.00 45.17 3.68
1031 1101 2.183679 CTACCTCTCAAGCTTCCAGGT 58.816 52.381 19.62 19.62 40.67 4.00
1034 1104 1.558756 CCTCTCAAGCTTCCAGGTCAT 59.441 52.381 0.00 0.00 0.00 3.06
1037 1107 0.976641 TCAAGCTTCCAGGTCATCGT 59.023 50.000 0.00 0.00 0.00 3.73
1525 1656 2.347490 GAGGACCTGCTCGGCAAA 59.653 61.111 0.00 0.00 38.41 3.68
1528 1659 1.302511 GGACCTGCTCGGCAAAGAA 60.303 57.895 0.35 0.00 38.41 2.52
1796 1927 2.736670 AGCCAGGACAAACAGTTCTT 57.263 45.000 0.00 0.00 32.08 2.52
1822 1953 5.443185 TGAACTGAAAATTCTGCCTCAAG 57.557 39.130 0.57 0.00 0.00 3.02
1883 2014 4.944962 TTTGGTGATACTGAGAAATGCG 57.055 40.909 0.00 0.00 0.00 4.73
1943 2122 2.035832 ACAAGCCAAGCCATAACAACAC 59.964 45.455 0.00 0.00 0.00 3.32
2095 2274 3.185246 ACTGAAATGGATAGGTCAGCG 57.815 47.619 0.00 0.00 40.99 5.18
2098 2277 0.532862 AAATGGATAGGTCAGCGCGG 60.533 55.000 8.83 0.00 0.00 6.46
2221 2400 6.618770 TTATCAACAAACAAACAACACACG 57.381 33.333 0.00 0.00 0.00 4.49
2229 2408 7.082602 ACAAACAAACAACACACGTACATTAA 58.917 30.769 0.00 0.00 0.00 1.40
2313 2492 1.136147 GCTGCGCATTTGAGTCTGG 59.864 57.895 12.24 0.00 0.00 3.86
2367 2546 1.003972 CGAGCAGCAAAACGAAGTGAA 60.004 47.619 0.00 0.00 45.00 3.18
2406 2585 0.841289 AAGACACTTCCGGGGACAAA 59.159 50.000 0.00 0.00 0.00 2.83
2412 2591 0.802494 CTTCCGGGGACAAATTCACG 59.198 55.000 0.00 0.00 0.00 4.35
2436 2615 3.312973 ACATTAGCGTCTTAGAGTCTCCG 59.687 47.826 0.00 0.00 0.00 4.63
2457 2638 1.466856 CCAAGCATGGCTGTGTACAT 58.533 50.000 0.00 0.00 40.58 2.29
2490 2671 6.206048 AGTTGTAGGTTGTAAAATGGCACTAC 59.794 38.462 0.00 0.00 0.00 2.73
2497 2678 9.640952 AGGTTGTAAAATGGCACTACATTATAT 57.359 29.630 6.72 0.00 40.01 0.86
2506 2687 5.991606 TGGCACTACATTATATTGAGACTGC 59.008 40.000 1.71 3.34 0.00 4.40
2515 2696 2.770164 ATTGAGACTGCACACCCTAC 57.230 50.000 0.00 0.00 0.00 3.18
2531 2712 6.938030 CACACCCTACTTTTGGTACTATGAAA 59.062 38.462 0.00 0.00 32.32 2.69
2544 2725 8.612486 TGGTACTATGAAATTACCTGGAGTAA 57.388 34.615 0.00 0.00 44.92 2.24
2710 2891 4.739195 TGTACACTTCACAAAACAAAGGC 58.261 39.130 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
125 126 1.071471 CTTCTTGGTGGTCGTGGCT 59.929 57.895 0.00 0.00 0.00 4.75
203 217 3.958147 CTACAGTGCCAGCCACCGG 62.958 68.421 0.00 0.00 45.83 5.28
204 218 2.434884 CTACAGTGCCAGCCACCG 60.435 66.667 0.00 0.00 45.83 4.94
222 236 3.633418 ACAGAGACCATAGTACACTCCC 58.367 50.000 0.00 0.00 0.00 4.30
223 237 4.098196 GGAACAGAGACCATAGTACACTCC 59.902 50.000 0.00 0.00 0.00 3.85
224 238 4.705507 TGGAACAGAGACCATAGTACACTC 59.294 45.833 0.00 0.00 0.00 3.51
225 239 4.463186 GTGGAACAGAGACCATAGTACACT 59.537 45.833 0.00 0.00 41.80 3.55
226 240 4.463186 AGTGGAACAGAGACCATAGTACAC 59.537 45.833 0.00 0.00 41.80 2.90
227 241 4.673968 AGTGGAACAGAGACCATAGTACA 58.326 43.478 0.00 0.00 41.80 2.90
230 244 4.282496 CCTAGTGGAACAGAGACCATAGT 58.718 47.826 0.00 0.00 41.80 2.12
231 245 3.068873 GCCTAGTGGAACAGAGACCATAG 59.931 52.174 0.00 0.00 41.80 2.23
232 246 3.031736 GCCTAGTGGAACAGAGACCATA 58.968 50.000 0.00 0.00 41.80 2.74
236 250 1.896465 AGTGCCTAGTGGAACAGAGAC 59.104 52.381 0.00 0.00 44.65 3.36
237 251 1.895798 CAGTGCCTAGTGGAACAGAGA 59.104 52.381 0.00 0.00 44.65 3.10
238 252 2.376808 CAGTGCCTAGTGGAACAGAG 57.623 55.000 0.00 0.00 44.65 3.35
247 261 2.266055 GCTTCGCCAGTGCCTAGT 59.734 61.111 0.00 0.00 0.00 2.57
248 262 2.887568 CGCTTCGCCAGTGCCTAG 60.888 66.667 0.00 0.00 0.00 3.02
249 263 3.691342 ACGCTTCGCCAGTGCCTA 61.691 61.111 0.00 0.00 36.33 3.93
252 266 4.374702 CACACGCTTCGCCAGTGC 62.375 66.667 0.00 0.00 39.31 4.40
253 267 4.374702 GCACACGCTTCGCCAGTG 62.375 66.667 0.00 0.00 41.28 3.66
257 271 4.719616 GAACGCACACGCTTCGCC 62.720 66.667 0.00 0.00 45.53 5.54
260 274 2.128128 CACGAACGCACACGCTTC 60.128 61.111 0.00 0.00 45.53 3.86
261 275 2.888534 ACACGAACGCACACGCTT 60.889 55.556 0.00 0.00 45.53 4.68
262 276 3.626244 CACACGAACGCACACGCT 61.626 61.111 0.00 0.00 45.53 5.07
263 277 3.920553 ACACACGAACGCACACGC 61.921 61.111 0.00 0.00 45.53 5.34
265 279 0.228742 CTACACACACGAACGCACAC 59.771 55.000 0.00 0.00 0.00 3.82
266 280 0.872451 CCTACACACACGAACGCACA 60.872 55.000 0.00 0.00 0.00 4.57
267 281 1.850640 CCTACACACACGAACGCAC 59.149 57.895 0.00 0.00 0.00 5.34
268 282 1.952133 GCCTACACACACGAACGCA 60.952 57.895 0.00 0.00 0.00 5.24
269 283 1.886861 CTGCCTACACACACGAACGC 61.887 60.000 0.00 0.00 0.00 4.84
270 284 0.596600 ACTGCCTACACACACGAACG 60.597 55.000 0.00 0.00 0.00 3.95
271 285 2.427232 TACTGCCTACACACACGAAC 57.573 50.000 0.00 0.00 0.00 3.95
272 286 3.455990 TTTACTGCCTACACACACGAA 57.544 42.857 0.00 0.00 0.00 3.85
273 287 3.671008 ATTTACTGCCTACACACACGA 57.329 42.857 0.00 0.00 0.00 4.35
274 288 3.306166 GCTATTTACTGCCTACACACACG 59.694 47.826 0.00 0.00 0.00 4.49
275 289 4.250464 TGCTATTTACTGCCTACACACAC 58.750 43.478 0.00 0.00 0.00 3.82
276 290 4.503910 CTGCTATTTACTGCCTACACACA 58.496 43.478 0.00 0.00 0.00 3.72
277 291 3.309954 GCTGCTATTTACTGCCTACACAC 59.690 47.826 0.00 0.00 0.00 3.82
278 292 3.055458 TGCTGCTATTTACTGCCTACACA 60.055 43.478 0.00 0.00 0.00 3.72
279 293 3.531538 TGCTGCTATTTACTGCCTACAC 58.468 45.455 0.00 0.00 0.00 2.90
280 294 3.432186 CCTGCTGCTATTTACTGCCTACA 60.432 47.826 0.00 0.00 0.00 2.74
281 295 3.134458 CCTGCTGCTATTTACTGCCTAC 58.866 50.000 0.00 0.00 0.00 3.18
282 296 2.771943 ACCTGCTGCTATTTACTGCCTA 59.228 45.455 0.00 0.00 0.00 3.93
283 297 1.561542 ACCTGCTGCTATTTACTGCCT 59.438 47.619 0.00 0.00 0.00 4.75
284 298 1.672881 CACCTGCTGCTATTTACTGCC 59.327 52.381 0.00 0.00 0.00 4.85
285 299 2.611292 CTCACCTGCTGCTATTTACTGC 59.389 50.000 0.00 0.00 0.00 4.40
286 300 3.201290 CCTCACCTGCTGCTATTTACTG 58.799 50.000 0.00 0.00 0.00 2.74
293 307 0.972983 GAGGACCTCACCTGCTGCTA 60.973 60.000 17.10 0.00 40.73 3.49
302 316 2.360801 GACATAGAGCAGAGGACCTCAC 59.639 54.545 23.60 14.59 32.06 3.51
323 337 3.074999 GCTGACCGAGCTCTCCAGG 62.075 68.421 20.73 13.99 45.21 4.45
324 338 2.493973 GCTGACCGAGCTCTCCAG 59.506 66.667 12.85 15.62 45.21 3.86
486 510 4.767255 GGAGCACCGAGCACCCAG 62.767 72.222 5.26 0.00 46.94 4.45
492 516 1.153667 CTTGAGAGGAGCACCGAGC 60.154 63.158 0.00 0.00 46.19 5.03
493 517 1.515020 CCTTGAGAGGAGCACCGAG 59.485 63.158 0.00 0.00 46.74 4.63
494 518 3.700109 CCTTGAGAGGAGCACCGA 58.300 61.111 0.00 0.00 46.74 4.69
522 546 2.354503 GGATGGATGACGGATCATGGAG 60.355 54.545 0.00 0.00 46.01 3.86
536 560 2.105477 CAAAGGAGACGGATGGATGGAT 59.895 50.000 0.00 0.00 0.00 3.41
568 592 5.594317 ACAAGTTTTCACCTCATTTAGTGCT 59.406 36.000 0.00 0.00 33.90 4.40
572 596 7.432252 GTGAACACAAGTTTTCACCTCATTTAG 59.568 37.037 17.19 0.00 43.90 1.85
604 633 0.666913 TACGTAGCGAGAGAATGGCC 59.333 55.000 0.00 0.00 32.00 5.36
792 838 0.036388 TCCACAGTCGGCCATTCTTC 60.036 55.000 2.24 0.00 0.00 2.87
805 851 0.817654 TCGATGTGCCTACTCCACAG 59.182 55.000 0.68 0.00 45.35 3.66
815 861 2.031245 TGTCAAATTGTGTCGATGTGCC 60.031 45.455 0.00 0.00 0.00 5.01
850 896 0.249238 GTTGATTTGTGTTGGGCGCA 60.249 50.000 10.83 0.00 35.54 6.09
854 900 4.697352 TGTTTTTGGTTGATTTGTGTTGGG 59.303 37.500 0.00 0.00 0.00 4.12
950 1005 2.559440 GCAGATGGAAGATGACTGGTC 58.441 52.381 0.00 0.00 0.00 4.02
975 1045 2.786495 CGTGGGACTGGATAGCGCT 61.786 63.158 17.26 17.26 0.00 5.92
1007 1077 1.903183 GGAAGCTTGAGAGGTAGGTGT 59.097 52.381 2.10 0.00 32.23 4.16
1184 1278 4.498520 CCTCATCGGCGTCAGCGT 62.499 66.667 6.85 0.00 46.35 5.07
1525 1656 3.327757 TGTTGACATAGTTGGAGGCTTCT 59.672 43.478 0.00 0.00 0.00 2.85
1528 1659 3.073062 ACTTGTTGACATAGTTGGAGGCT 59.927 43.478 0.00 0.00 0.00 4.58
1778 1909 2.687935 TGAAAGAACTGTTTGTCCTGGC 59.312 45.455 0.00 0.00 0.00 4.85
1796 1927 5.535783 TGAGGCAGAATTTTCAGTTCATGAA 59.464 36.000 3.38 3.38 46.31 2.57
1822 1953 2.760092 CTGAGGCTATCCTGGATAGAGC 59.240 54.545 36.49 27.95 43.17 4.09
1883 2014 7.582435 TTGTTCATTCAAGACTAGAATCGTC 57.418 36.000 0.00 0.00 33.64 4.20
2095 2274 0.882927 TTAACAGTCAGGTGTGCCGC 60.883 55.000 0.00 0.00 40.50 6.53
2098 2277 7.786178 TGATTATATTAACAGTCAGGTGTGC 57.214 36.000 0.00 0.00 0.00 4.57
2221 2400 3.511146 CCCATGGGCCATCATTAATGTAC 59.489 47.826 20.41 3.79 33.13 2.90
2229 2408 2.610501 CCACCCATGGGCCATCAT 59.389 61.111 31.73 7.16 43.04 2.45
2364 2543 6.020971 TCTACAAGCGAGTCTATTTGTTCA 57.979 37.500 8.44 0.00 35.55 3.18
2367 2546 6.094061 GTCTTCTACAAGCGAGTCTATTTGT 58.906 40.000 8.28 8.28 37.51 2.83
2406 2585 5.647589 TCTAAGACGCTAATGTTCGTGAAT 58.352 37.500 0.00 0.00 39.22 2.57
2412 2591 5.275494 GGAGACTCTAAGACGCTAATGTTC 58.725 45.833 1.74 0.00 0.00 3.18
2457 2638 7.463961 TTTTACAACCTACAACTGTTTTCCA 57.536 32.000 0.00 0.00 0.00 3.53
2490 2671 5.371526 AGGGTGTGCAGTCTCAATATAATG 58.628 41.667 0.00 0.00 0.00 1.90
2497 2678 1.717032 AGTAGGGTGTGCAGTCTCAA 58.283 50.000 0.00 0.00 0.00 3.02
2506 2687 6.045072 TCATAGTACCAAAAGTAGGGTGTG 57.955 41.667 0.00 0.00 38.06 3.82
2531 2712 6.786967 ACTGACGTATTTACTCCAGGTAAT 57.213 37.500 0.00 0.00 39.75 1.89
2544 2725 4.039973 TCAGGAACTCCAAACTGACGTATT 59.960 41.667 0.00 0.00 34.60 1.89
2710 2891 3.694566 GGAAACCCAGGTAGTTTGCTATG 59.305 47.826 5.81 0.00 40.96 2.23


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.