Multiple sequence alignment - TraesCS2B01G341600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G341600 chr2B 100.000 3314 0 0 1 3314 486986397 486983084 0.000000e+00 6120.0
1 TraesCS2B01G341600 chr2B 89.617 183 15 3 3044 3223 731352391 731352210 2.570000e-56 230.0
2 TraesCS2B01G341600 chr2D 93.407 1623 49 24 1 1597 413778240 413776650 0.000000e+00 2351.0
3 TraesCS2B01G341600 chr2D 92.380 1168 58 17 1816 2972 413776648 413775501 0.000000e+00 1635.0
4 TraesCS2B01G341600 chr2D 80.631 222 39 3 4 223 612438396 612438177 5.690000e-38 169.0
5 TraesCS2B01G341600 chr2D 96.703 91 3 0 3224 3314 413775474 413775384 5.730000e-33 152.0
6 TraesCS2B01G341600 chr2D 89.796 49 5 0 2995 3043 413775513 413775465 2.760000e-06 63.9
7 TraesCS2B01G341600 chr2A 92.765 1631 61 16 1 1599 580853012 580851407 0.000000e+00 2305.0
8 TraesCS2B01G341600 chr2A 90.025 1193 86 20 1814 2993 580851409 580850237 0.000000e+00 1513.0
9 TraesCS2B01G341600 chr2A 81.081 222 38 3 4 223 744529621 744529402 1.220000e-39 174.0
10 TraesCS2B01G341600 chr2A 86.813 91 2 1 3224 3314 580850185 580850105 3.520000e-15 93.5
11 TraesCS2B01G341600 chr1B 96.957 230 7 0 1597 1826 530867992 530868221 1.440000e-103 387.0
12 TraesCS2B01G341600 chr1B 97.268 183 3 1 3043 3223 209129298 209129116 3.210000e-80 309.0
13 TraesCS2B01G341600 chr7B 97.768 224 4 1 1594 1816 648055897 648055674 5.190000e-103 385.0
14 TraesCS2B01G341600 chr7B 98.174 219 4 0 1597 1815 301590884 301591102 1.870000e-102 383.0
15 TraesCS2B01G341600 chr7B 90.811 185 14 2 3042 3223 640917695 640917879 9.190000e-61 244.0
16 TraesCS2B01G341600 chr7B 90.110 182 15 2 3044 3223 625944686 625944506 1.990000e-57 233.0
17 TraesCS2B01G341600 chr7D 98.174 219 4 0 1597 1815 227049056 227048838 1.870000e-102 383.0
18 TraesCS2B01G341600 chr7D 92.896 183 10 2 3043 3222 621980574 621980392 2.540000e-66 263.0
19 TraesCS2B01G341600 chr7A 97.321 224 6 0 1600 1823 650618242 650618019 6.710000e-102 381.0
20 TraesCS2B01G341600 chr7A 97.283 184 2 2 3043 3223 316240446 316240263 3.210000e-80 309.0
21 TraesCS2B01G341600 chr7A 89.071 183 18 2 3043 3224 566344661 566344842 3.330000e-55 226.0
22 TraesCS2B01G341600 chr6D 97.727 220 5 0 1596 1815 35626881 35627100 2.410000e-101 379.0
23 TraesCS2B01G341600 chr6D 96.491 228 7 1 1589 1815 329496947 329497174 3.120000e-100 375.0
24 TraesCS2B01G341600 chr6A 97.321 224 5 1 1599 1822 276454115 276453893 2.410000e-101 379.0
25 TraesCS2B01G341600 chr3B 96.104 231 8 1 1594 1823 216206537 216206767 3.120000e-100 375.0
26 TraesCS2B01G341600 chr5B 90.217 184 14 3 3044 3224 470518991 470518809 1.540000e-58 237.0
27 TraesCS2B01G341600 chr5B 90.476 84 6 2 23 105 388407745 388407827 3.500000e-20 110.0
28 TraesCS2B01G341600 chr1D 87.432 183 19 3 3044 3223 9667257 9667438 1.210000e-49 207.0
29 TraesCS2B01G341600 chr5D 90.476 84 6 2 23 105 332450216 332450298 3.500000e-20 110.0
30 TraesCS2B01G341600 chr5A 90.361 83 8 0 23 105 433312029 433312111 3.500000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G341600 chr2B 486983084 486986397 3313 True 6120.000000 6120 100.000000 1 3314 1 chr2B.!!$R1 3313
1 TraesCS2B01G341600 chr2D 413775384 413778240 2856 True 1050.475000 2351 93.071500 1 3314 4 chr2D.!!$R2 3313
2 TraesCS2B01G341600 chr2A 580850105 580853012 2907 True 1303.833333 2305 89.867667 1 3314 3 chr2A.!!$R2 3313

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
501 511 0.036164 TGCCCATTAACTGCGTCTGT 59.964 50.0 0.00 0.0 0.00 3.41 F
1195 1236 0.383949 AATTGTGTTGCCTTTCGCGT 59.616 45.0 5.77 0.0 42.08 6.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1626 1680 0.386476 TGGCAACCTAGGTATACGCG 59.614 55.0 16.67 3.53 0.0 6.01 R
3103 3186 0.030092 TGGAATCAGGGGGTAGAGGG 60.030 60.0 0.00 0.00 0.0 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
321 324 4.215185 TCGAGGTAACGTAATGTGTGTACA 59.785 41.667 0.00 0.00 46.39 2.90
340 343 4.783764 ACAGAACGTGTGATGACTGATA 57.216 40.909 5.22 0.00 38.28 2.15
501 511 0.036164 TGCCCATTAACTGCGTCTGT 59.964 50.000 0.00 0.00 0.00 3.41
534 547 7.928706 ACTACTCCACTATTTTATGCTCATGTC 59.071 37.037 0.00 0.00 0.00 3.06
569 582 6.205464 TCTCAACTTCTTATTTTGGACTGCTG 59.795 38.462 0.00 0.00 0.00 4.41
595 609 1.131883 AGTATACGTGACAGCACCGAC 59.868 52.381 0.00 0.00 42.09 4.79
599 616 1.664649 CGTGACAGCACCGACACAT 60.665 57.895 0.00 0.00 42.09 3.21
890 924 4.500116 GTCTCACTCGCCTCCGGC 62.500 72.222 0.00 0.00 46.75 6.13
914 948 1.004436 TACAAAAGGACCCCCATCCC 58.996 55.000 0.00 0.00 39.91 3.85
916 950 1.151131 AAAAGGACCCCCATCCCCT 60.151 57.895 0.00 0.00 39.91 4.79
993 1027 1.812571 CCAAACTTCCCAAGTGATCCG 59.187 52.381 0.00 0.00 41.91 4.18
1038 1078 2.020926 GGAGTACTCCTACGACGCC 58.979 63.158 31.12 5.20 46.16 5.68
1039 1079 1.640604 GAGTACTCCTACGACGCCG 59.359 63.158 12.13 0.00 42.50 6.46
1044 1084 2.512286 TCCTACGACGCCGACGAT 60.512 61.111 16.72 2.81 43.93 3.73
1068 1108 3.641906 AGGACGATTTCTACATCCGGAAT 59.358 43.478 9.01 1.67 34.46 3.01
1133 1173 3.715854 CGCGAGCCAGGGTATATAC 57.284 57.895 0.00 4.14 0.00 1.47
1136 1176 1.749634 GCGAGCCAGGGTATATACGAT 59.250 52.381 6.79 0.00 0.00 3.73
1181 1222 9.354673 CCCACTTATATATGGTTCTTGAATTGT 57.645 33.333 0.00 0.00 33.80 2.71
1195 1236 0.383949 AATTGTGTTGCCTTTCGCGT 59.616 45.000 5.77 0.00 42.08 6.01
1273 1314 8.034058 AGTAATTCTCTGCATTCTTGTGTTAC 57.966 34.615 0.00 0.00 0.00 2.50
1367 1419 5.139727 ACAGTTGGTTTCATGGATTCAGAA 58.860 37.500 0.00 0.00 0.00 3.02
1389 1441 4.428294 TTGGATCCCTTGCTAGATCTTG 57.572 45.455 9.90 0.00 39.12 3.02
1402 1454 6.172630 TGCTAGATCTTGTGTATTTTGCTCA 58.827 36.000 0.00 0.00 0.00 4.26
1610 1664 9.993454 AAATATTAGGAATACTACCTCCGTTTC 57.007 33.333 0.00 0.00 38.76 2.78
1611 1665 8.716674 ATATTAGGAATACTACCTCCGTTTCA 57.283 34.615 0.00 0.00 38.76 2.69
1612 1666 6.461110 TTAGGAATACTACCTCCGTTTCAG 57.539 41.667 0.00 0.00 38.76 3.02
1613 1667 4.351127 AGGAATACTACCTCCGTTTCAGT 58.649 43.478 0.00 0.00 36.78 3.41
1614 1668 4.776308 AGGAATACTACCTCCGTTTCAGTT 59.224 41.667 0.00 0.00 36.78 3.16
1615 1669 5.247792 AGGAATACTACCTCCGTTTCAGTTT 59.752 40.000 0.00 0.00 36.78 2.66
1616 1670 6.438425 AGGAATACTACCTCCGTTTCAGTTTA 59.562 38.462 0.00 0.00 36.78 2.01
1617 1671 6.533012 GGAATACTACCTCCGTTTCAGTTTAC 59.467 42.308 0.00 0.00 0.00 2.01
1618 1672 4.942761 ACTACCTCCGTTTCAGTTTACA 57.057 40.909 0.00 0.00 0.00 2.41
1619 1673 5.280654 ACTACCTCCGTTTCAGTTTACAA 57.719 39.130 0.00 0.00 0.00 2.41
1620 1674 5.295152 ACTACCTCCGTTTCAGTTTACAAG 58.705 41.667 0.00 0.00 0.00 3.16
1621 1675 4.146745 ACCTCCGTTTCAGTTTACAAGT 57.853 40.909 0.00 0.00 0.00 3.16
1622 1676 4.124970 ACCTCCGTTTCAGTTTACAAGTC 58.875 43.478 0.00 0.00 0.00 3.01
1623 1677 3.497262 CCTCCGTTTCAGTTTACAAGTCC 59.503 47.826 0.00 0.00 0.00 3.85
1624 1678 4.377897 CTCCGTTTCAGTTTACAAGTCCT 58.622 43.478 0.00 0.00 0.00 3.85
1625 1679 5.510179 CCTCCGTTTCAGTTTACAAGTCCTA 60.510 44.000 0.00 0.00 0.00 2.94
1626 1680 5.291971 TCCGTTTCAGTTTACAAGTCCTAC 58.708 41.667 0.00 0.00 0.00 3.18
1627 1681 4.149396 CCGTTTCAGTTTACAAGTCCTACG 59.851 45.833 0.00 0.00 0.00 3.51
1628 1682 4.375706 CGTTTCAGTTTACAAGTCCTACGC 60.376 45.833 0.00 0.00 0.00 4.42
1629 1683 2.937591 TCAGTTTACAAGTCCTACGCG 58.062 47.619 3.53 3.53 0.00 6.01
1630 1684 2.294233 TCAGTTTACAAGTCCTACGCGT 59.706 45.455 19.17 19.17 0.00 6.01
1631 1685 3.501828 TCAGTTTACAAGTCCTACGCGTA 59.498 43.478 19.40 19.40 0.00 4.42
1632 1686 4.156556 TCAGTTTACAAGTCCTACGCGTAT 59.843 41.667 20.91 5.41 0.00 3.06
1633 1687 5.353956 TCAGTTTACAAGTCCTACGCGTATA 59.646 40.000 20.91 8.44 0.00 1.47
1634 1688 5.453587 CAGTTTACAAGTCCTACGCGTATAC 59.546 44.000 20.91 19.74 0.00 1.47
1635 1689 4.552166 TTACAAGTCCTACGCGTATACC 57.448 45.455 20.91 10.04 0.00 2.73
1636 1690 2.648059 ACAAGTCCTACGCGTATACCT 58.352 47.619 20.91 12.19 0.00 3.08
1637 1691 3.808728 ACAAGTCCTACGCGTATACCTA 58.191 45.455 20.91 0.00 0.00 3.08
1638 1692 3.812053 ACAAGTCCTACGCGTATACCTAG 59.188 47.826 20.91 8.56 0.00 3.02
1639 1693 3.051081 AGTCCTACGCGTATACCTAGG 57.949 52.381 20.91 18.03 0.00 3.02
1640 1694 2.370189 AGTCCTACGCGTATACCTAGGT 59.630 50.000 20.91 20.57 0.00 3.08
1641 1695 3.142174 GTCCTACGCGTATACCTAGGTT 58.858 50.000 22.11 10.62 0.00 3.50
1642 1696 3.058639 GTCCTACGCGTATACCTAGGTTG 60.059 52.174 22.11 9.15 0.00 3.77
1643 1697 2.351157 CCTACGCGTATACCTAGGTTGC 60.351 54.545 22.11 17.41 0.00 4.17
1644 1698 0.386838 ACGCGTATACCTAGGTTGCC 59.613 55.000 22.11 7.02 0.00 4.52
1645 1699 0.386476 CGCGTATACCTAGGTTGCCA 59.614 55.000 22.11 1.21 0.00 4.92
1646 1700 1.202440 CGCGTATACCTAGGTTGCCAA 60.202 52.381 22.11 0.75 0.00 4.52
1647 1701 2.547218 CGCGTATACCTAGGTTGCCAAT 60.547 50.000 22.11 9.64 0.00 3.16
1648 1702 3.473625 GCGTATACCTAGGTTGCCAATT 58.526 45.455 22.11 0.00 0.00 2.32
1649 1703 3.881089 GCGTATACCTAGGTTGCCAATTT 59.119 43.478 22.11 0.00 0.00 1.82
1650 1704 4.337274 GCGTATACCTAGGTTGCCAATTTT 59.663 41.667 22.11 0.00 0.00 1.82
1651 1705 5.528320 GCGTATACCTAGGTTGCCAATTTTA 59.472 40.000 22.11 0.00 0.00 1.52
1652 1706 6.206048 GCGTATACCTAGGTTGCCAATTTTAT 59.794 38.462 22.11 5.71 0.00 1.40
1653 1707 7.572539 GCGTATACCTAGGTTGCCAATTTTATC 60.573 40.741 22.11 0.00 0.00 1.75
1654 1708 7.442969 CGTATACCTAGGTTGCCAATTTTATCA 59.557 37.037 22.11 0.00 0.00 2.15
1655 1709 5.914898 ACCTAGGTTGCCAATTTTATCAC 57.085 39.130 9.21 0.00 0.00 3.06
1656 1710 4.709886 ACCTAGGTTGCCAATTTTATCACC 59.290 41.667 9.21 0.00 0.00 4.02
1657 1711 4.099419 CCTAGGTTGCCAATTTTATCACCC 59.901 45.833 0.00 0.00 0.00 4.61
1658 1712 3.790126 AGGTTGCCAATTTTATCACCCT 58.210 40.909 0.00 0.00 0.00 4.34
1659 1713 4.941713 AGGTTGCCAATTTTATCACCCTA 58.058 39.130 0.00 0.00 0.00 3.53
1660 1714 5.337788 AGGTTGCCAATTTTATCACCCTAA 58.662 37.500 0.00 0.00 0.00 2.69
1661 1715 5.963865 AGGTTGCCAATTTTATCACCCTAAT 59.036 36.000 0.00 0.00 0.00 1.73
1662 1716 7.129425 AGGTTGCCAATTTTATCACCCTAATA 58.871 34.615 0.00 0.00 0.00 0.98
1663 1717 7.789349 AGGTTGCCAATTTTATCACCCTAATAT 59.211 33.333 0.00 0.00 0.00 1.28
1664 1718 9.084533 GGTTGCCAATTTTATCACCCTAATATA 57.915 33.333 0.00 0.00 0.00 0.86
1713 1767 9.251440 ACCTTTTAAAAGTAGAAACTCCAAAGT 57.749 29.630 23.04 8.52 33.75 2.66
1764 1818 9.920946 ATATGACTTGTATTAGGTTGGTCAAAT 57.079 29.630 0.00 0.00 36.16 2.32
1765 1819 8.650143 ATGACTTGTATTAGGTTGGTCAAATT 57.350 30.769 0.00 0.00 36.16 1.82
1766 1820 7.881142 TGACTTGTATTAGGTTGGTCAAATTG 58.119 34.615 0.00 0.00 30.81 2.32
1767 1821 7.721842 TGACTTGTATTAGGTTGGTCAAATTGA 59.278 33.333 0.00 0.00 30.81 2.57
1768 1822 7.882179 ACTTGTATTAGGTTGGTCAAATTGAC 58.118 34.615 17.16 17.16 46.23 3.18
1778 1832 2.629051 GTCAAATTGACGACCTAGGGG 58.371 52.381 14.81 7.16 37.67 4.79
1779 1833 2.027469 GTCAAATTGACGACCTAGGGGT 60.027 50.000 14.81 10.74 42.37 4.95
1780 1834 3.196254 GTCAAATTGACGACCTAGGGGTA 59.804 47.826 14.81 0.00 40.90 3.69
1781 1835 4.916984 GTCAAATTGACGACCTAGGGGTAC 60.917 50.000 14.81 2.61 40.90 3.34
1795 1849 2.202824 GTACGCGCATGCCCTGTA 60.203 61.111 13.15 9.55 38.08 2.74
1796 1850 1.812093 GTACGCGCATGCCCTGTAA 60.812 57.895 13.15 0.00 38.08 2.41
1797 1851 1.079057 TACGCGCATGCCCTGTAAA 60.079 52.632 13.15 0.00 38.08 2.01
1798 1852 1.363145 TACGCGCATGCCCTGTAAAC 61.363 55.000 13.15 0.00 38.08 2.01
1799 1853 2.398554 CGCGCATGCCCTGTAAACT 61.399 57.895 13.15 0.00 38.08 2.66
1800 1854 1.137404 GCGCATGCCCTGTAAACTG 59.863 57.895 13.15 0.00 33.98 3.16
1801 1855 1.305219 GCGCATGCCCTGTAAACTGA 61.305 55.000 13.15 0.00 33.98 3.41
1802 1856 0.729116 CGCATGCCCTGTAAACTGAG 59.271 55.000 13.15 0.00 0.00 3.35
1803 1857 1.675714 CGCATGCCCTGTAAACTGAGA 60.676 52.381 13.15 0.00 0.00 3.27
1804 1858 2.012673 GCATGCCCTGTAAACTGAGAG 58.987 52.381 6.36 0.00 0.00 3.20
1805 1859 2.355108 GCATGCCCTGTAAACTGAGAGA 60.355 50.000 6.36 0.00 0.00 3.10
1806 1860 3.529533 CATGCCCTGTAAACTGAGAGAG 58.470 50.000 0.00 0.00 0.00 3.20
1807 1861 2.889512 TGCCCTGTAAACTGAGAGAGA 58.110 47.619 0.00 0.00 0.00 3.10
1808 1862 2.828520 TGCCCTGTAAACTGAGAGAGAG 59.171 50.000 0.00 0.00 0.00 3.20
1809 1863 2.167487 GCCCTGTAAACTGAGAGAGAGG 59.833 54.545 0.00 0.00 0.00 3.69
1810 1864 3.436243 CCCTGTAAACTGAGAGAGAGGT 58.564 50.000 0.00 0.00 0.00 3.85
1811 1865 4.601084 CCCTGTAAACTGAGAGAGAGGTA 58.399 47.826 0.00 0.00 0.00 3.08
1812 1866 4.642885 CCCTGTAAACTGAGAGAGAGGTAG 59.357 50.000 0.00 0.00 0.00 3.18
1813 1867 5.258051 CCTGTAAACTGAGAGAGAGGTAGT 58.742 45.833 0.00 0.00 0.00 2.73
1882 1936 6.069905 TCACATATTTGGGGAGCAACTTACTA 60.070 38.462 0.00 0.00 0.00 1.82
1883 1937 6.260936 CACATATTTGGGGAGCAACTTACTAG 59.739 42.308 0.00 0.00 0.00 2.57
1884 1938 2.781681 TTGGGGAGCAACTTACTAGC 57.218 50.000 0.00 0.00 0.00 3.42
1933 1987 3.248602 CCGCAGCTGTATGAATTAACTCC 59.751 47.826 16.64 0.00 0.00 3.85
2052 2111 3.366374 GGCTTTCAAGATTTTCACCGAGG 60.366 47.826 0.00 0.00 0.00 4.63
2053 2112 3.253432 GCTTTCAAGATTTTCACCGAGGT 59.747 43.478 0.00 0.00 0.00 3.85
2054 2113 4.454504 GCTTTCAAGATTTTCACCGAGGTA 59.545 41.667 0.00 0.00 0.00 3.08
2218 2278 2.825836 CGCCATTGGGACTGGAGC 60.826 66.667 4.53 0.00 35.70 4.70
2230 2290 1.620819 GACTGGAGCAGAAGGACAAGA 59.379 52.381 0.00 0.00 35.18 3.02
2236 2296 1.296715 CAGAAGGACAAGACCCCGG 59.703 63.158 0.00 0.00 0.00 5.73
2289 2349 2.204059 AAGGAGCAGCCCCAGACT 60.204 61.111 0.00 0.00 37.37 3.24
2424 2487 4.849883 TGAATAATCGCGTGTTTGTTTGT 58.150 34.783 5.77 0.00 0.00 2.83
2428 2491 2.333389 TCGCGTGTTTGTTTGTTTGT 57.667 40.000 5.77 0.00 0.00 2.83
2429 2492 2.662700 TCGCGTGTTTGTTTGTTTGTT 58.337 38.095 5.77 0.00 0.00 2.83
2430 2493 3.050619 TCGCGTGTTTGTTTGTTTGTTT 58.949 36.364 5.77 0.00 0.00 2.83
2431 2494 3.121328 TCGCGTGTTTGTTTGTTTGTTTG 60.121 39.130 5.77 0.00 0.00 2.93
2432 2495 3.362110 CGCGTGTTTGTTTGTTTGTTTGT 60.362 39.130 0.00 0.00 0.00 2.83
2497 2561 0.107897 TCCACCGAATGAACCATCCG 60.108 55.000 0.00 0.00 0.00 4.18
2512 2576 3.126343 ACCATCCGTTTCGTTTAATGCTC 59.874 43.478 0.00 0.00 0.00 4.26
2513 2577 3.486875 CCATCCGTTTCGTTTAATGCTCC 60.487 47.826 0.00 0.00 0.00 4.70
2528 2592 1.198178 TGCTCCGGCGTTTATTTTGTC 59.802 47.619 6.01 0.00 42.25 3.18
2534 2598 2.235855 GGCGTTTATTTTGTCCGTTCG 58.764 47.619 0.00 0.00 0.00 3.95
2584 2648 1.003003 TCTCATGTTCCGATGTTGGCA 59.997 47.619 0.00 0.00 0.00 4.92
2585 2649 2.019249 CTCATGTTCCGATGTTGGCAT 58.981 47.619 0.00 0.00 38.18 4.40
2607 2672 2.481952 GGTCTATTCATCGAATGCCTGC 59.518 50.000 0.00 0.00 33.95 4.85
2616 2681 4.763279 TCATCGAATGCCTGCATATTTCAT 59.237 37.500 4.84 0.00 35.31 2.57
2623 2688 5.509716 TGCCTGCATATTTCATGAGAAAG 57.490 39.130 0.00 0.00 46.13 2.62
2647 2712 9.918630 AAGATAGACAATTTGTTGAAGATTTGG 57.081 29.630 3.08 0.00 0.00 3.28
2649 2714 4.984161 AGACAATTTGTTGAAGATTTGGCG 59.016 37.500 3.08 0.00 0.00 5.69
2674 2739 7.855904 CGTTTGGAAGCCTTTGTATATATGAAC 59.144 37.037 0.00 0.00 0.00 3.18
2699 2764 3.152341 CCAATCTTCAAGCCACACTCTT 58.848 45.455 0.00 0.00 0.00 2.85
2718 2783 8.778358 ACACTCTTTAGCAAAGAACTAGAAATG 58.222 33.333 0.00 0.00 46.13 2.32
2751 2816 1.194547 CGCTCACGTTGCACATAACTT 59.805 47.619 10.37 0.00 33.53 2.66
2756 2821 5.856455 GCTCACGTTGCACATAACTTAAAAT 59.144 36.000 5.53 0.00 0.00 1.82
2761 2826 5.629020 CGTTGCACATAACTTAAAATGCAGT 59.371 36.000 0.00 0.00 43.37 4.40
2762 2827 6.398830 CGTTGCACATAACTTAAAATGCAGTG 60.399 38.462 0.00 0.00 43.37 3.66
2763 2828 6.324561 TGCACATAACTTAAAATGCAGTGA 57.675 33.333 0.00 0.00 38.11 3.41
2783 2854 9.573166 GCAGTGACATCTCCTATATCTATATCT 57.427 37.037 0.00 0.00 0.00 1.98
2862 2933 2.279851 CGTGCACTGGTGACCGAA 60.280 61.111 16.19 0.00 0.00 4.30
2873 2944 5.685511 CACTGGTGACCGAAATTAACAAAAG 59.314 40.000 0.00 0.00 0.00 2.27
2976 3047 1.533731 CAACCGATGTTGTAGCCGTTT 59.466 47.619 0.00 0.00 45.51 3.60
3055 3138 3.471680 GGTTTTGCCCAAAAATGCTACA 58.528 40.909 7.67 0.00 41.37 2.74
3056 3139 3.249799 GGTTTTGCCCAAAAATGCTACAC 59.750 43.478 7.67 0.00 41.37 2.90
3057 3140 2.829741 TTGCCCAAAAATGCTACACC 57.170 45.000 0.00 0.00 0.00 4.16
3058 3141 2.008242 TGCCCAAAAATGCTACACCT 57.992 45.000 0.00 0.00 0.00 4.00
3059 3142 3.162147 TGCCCAAAAATGCTACACCTA 57.838 42.857 0.00 0.00 0.00 3.08
3060 3143 3.707316 TGCCCAAAAATGCTACACCTAT 58.293 40.909 0.00 0.00 0.00 2.57
3061 3144 4.861196 TGCCCAAAAATGCTACACCTATA 58.139 39.130 0.00 0.00 0.00 1.31
3062 3145 5.265191 TGCCCAAAAATGCTACACCTATAA 58.735 37.500 0.00 0.00 0.00 0.98
3063 3146 5.717178 TGCCCAAAAATGCTACACCTATAAA 59.283 36.000 0.00 0.00 0.00 1.40
3064 3147 6.211584 TGCCCAAAAATGCTACACCTATAAAA 59.788 34.615 0.00 0.00 0.00 1.52
3065 3148 7.093112 TGCCCAAAAATGCTACACCTATAAAAT 60.093 33.333 0.00 0.00 0.00 1.82
3066 3149 7.224557 GCCCAAAAATGCTACACCTATAAAATG 59.775 37.037 0.00 0.00 0.00 2.32
3067 3150 7.224557 CCCAAAAATGCTACACCTATAAAATGC 59.775 37.037 0.00 0.00 0.00 3.56
3068 3151 7.224557 CCAAAAATGCTACACCTATAAAATGCC 59.775 37.037 0.00 0.00 0.00 4.40
3069 3152 7.660030 AAAATGCTACACCTATAAAATGCCT 57.340 32.000 0.00 0.00 0.00 4.75
3070 3153 8.760980 AAAATGCTACACCTATAAAATGCCTA 57.239 30.769 0.00 0.00 0.00 3.93
3071 3154 7.745620 AATGCTACACCTATAAAATGCCTAC 57.254 36.000 0.00 0.00 0.00 3.18
3072 3155 5.294356 TGCTACACCTATAAAATGCCTACG 58.706 41.667 0.00 0.00 0.00 3.51
3073 3156 5.163385 TGCTACACCTATAAAATGCCTACGT 60.163 40.000 0.00 0.00 0.00 3.57
3074 3157 6.040729 TGCTACACCTATAAAATGCCTACGTA 59.959 38.462 0.00 0.00 0.00 3.57
3075 3158 6.364435 GCTACACCTATAAAATGCCTACGTAC 59.636 42.308 0.00 0.00 0.00 3.67
3076 3159 6.475596 ACACCTATAAAATGCCTACGTACT 57.524 37.500 0.00 0.00 0.00 2.73
3077 3160 6.278363 ACACCTATAAAATGCCTACGTACTG 58.722 40.000 0.00 0.00 0.00 2.74
3078 3161 6.127253 ACACCTATAAAATGCCTACGTACTGT 60.127 38.462 0.00 0.00 0.00 3.55
3079 3162 6.759827 CACCTATAAAATGCCTACGTACTGTT 59.240 38.462 0.00 0.00 0.00 3.16
3080 3163 7.922278 CACCTATAAAATGCCTACGTACTGTTA 59.078 37.037 0.00 0.00 0.00 2.41
3081 3164 7.922811 ACCTATAAAATGCCTACGTACTGTTAC 59.077 37.037 0.00 0.00 0.00 2.50
3097 3180 9.203668 CGTACTGTTACGTAATTAGACTAACTG 57.796 37.037 21.88 11.51 45.11 3.16
3098 3181 9.004146 GTACTGTTACGTAATTAGACTAACTGC 57.996 37.037 21.88 3.91 0.00 4.40
3099 3182 7.824672 ACTGTTACGTAATTAGACTAACTGCT 58.175 34.615 21.88 2.02 0.00 4.24
3100 3183 8.950210 ACTGTTACGTAATTAGACTAACTGCTA 58.050 33.333 21.88 0.00 0.00 3.49
3101 3184 9.778993 CTGTTACGTAATTAGACTAACTGCTAA 57.221 33.333 11.86 0.00 0.00 3.09
3104 3187 9.956720 TTACGTAATTAGACTAACTGCTAATCC 57.043 33.333 3.29 0.00 36.56 3.01
3105 3188 7.432059 ACGTAATTAGACTAACTGCTAATCCC 58.568 38.462 0.00 0.00 36.56 3.85
3106 3189 7.287235 ACGTAATTAGACTAACTGCTAATCCCT 59.713 37.037 0.00 0.00 36.56 4.20
3107 3190 7.808856 CGTAATTAGACTAACTGCTAATCCCTC 59.191 40.741 0.00 0.00 36.56 4.30
3108 3191 7.922699 AATTAGACTAACTGCTAATCCCTCT 57.077 36.000 0.00 0.00 36.56 3.69
3110 3193 7.820578 TTAGACTAACTGCTAATCCCTCTAC 57.179 40.000 0.00 0.00 0.00 2.59
3111 3194 5.141910 AGACTAACTGCTAATCCCTCTACC 58.858 45.833 0.00 0.00 0.00 3.18
3112 3195 4.224762 ACTAACTGCTAATCCCTCTACCC 58.775 47.826 0.00 0.00 0.00 3.69
3113 3196 2.104669 ACTGCTAATCCCTCTACCCC 57.895 55.000 0.00 0.00 0.00 4.95
3114 3197 1.353091 CTGCTAATCCCTCTACCCCC 58.647 60.000 0.00 0.00 0.00 5.40
3115 3198 0.949582 TGCTAATCCCTCTACCCCCT 59.050 55.000 0.00 0.00 0.00 4.79
3116 3199 1.353091 GCTAATCCCTCTACCCCCTG 58.647 60.000 0.00 0.00 0.00 4.45
3117 3200 1.132817 GCTAATCCCTCTACCCCCTGA 60.133 57.143 0.00 0.00 0.00 3.86
3118 3201 2.495572 GCTAATCCCTCTACCCCCTGAT 60.496 54.545 0.00 0.00 0.00 2.90
3119 3202 2.918774 AATCCCTCTACCCCCTGATT 57.081 50.000 0.00 0.00 0.00 2.57
3120 3203 2.424684 ATCCCTCTACCCCCTGATTC 57.575 55.000 0.00 0.00 0.00 2.52
3121 3204 0.267960 TCCCTCTACCCCCTGATTCC 59.732 60.000 0.00 0.00 0.00 3.01
3122 3205 0.030092 CCCTCTACCCCCTGATTCCA 60.030 60.000 0.00 0.00 0.00 3.53
3123 3206 1.628043 CCCTCTACCCCCTGATTCCAA 60.628 57.143 0.00 0.00 0.00 3.53
3124 3207 1.490910 CCTCTACCCCCTGATTCCAAC 59.509 57.143 0.00 0.00 0.00 3.77
3125 3208 2.482494 CTCTACCCCCTGATTCCAACT 58.518 52.381 0.00 0.00 0.00 3.16
3126 3209 2.171448 CTCTACCCCCTGATTCCAACTG 59.829 54.545 0.00 0.00 0.00 3.16
3127 3210 1.212935 CTACCCCCTGATTCCAACTGG 59.787 57.143 0.00 0.00 0.00 4.00
3128 3211 1.307647 CCCCCTGATTCCAACTGGG 59.692 63.158 0.00 0.00 43.23 4.45
3129 3212 1.509548 CCCCCTGATTCCAACTGGGT 61.510 60.000 0.00 0.00 42.45 4.51
3130 3213 0.323725 CCCCTGATTCCAACTGGGTG 60.324 60.000 0.00 0.00 42.45 4.61
3131 3214 0.323725 CCCTGATTCCAACTGGGTGG 60.324 60.000 0.00 0.00 40.22 4.61
3132 3215 0.323725 CCTGATTCCAACTGGGTGGG 60.324 60.000 4.73 0.00 39.34 4.61
3133 3216 0.323725 CTGATTCCAACTGGGTGGGG 60.324 60.000 4.73 0.00 39.34 4.96
3134 3217 1.071314 TGATTCCAACTGGGTGGGGT 61.071 55.000 4.73 0.00 39.34 4.95
3135 3218 0.323451 GATTCCAACTGGGTGGGGTC 60.323 60.000 4.73 0.32 39.34 4.46
3136 3219 1.800229 ATTCCAACTGGGTGGGGTCC 61.800 60.000 4.73 0.00 39.34 4.46
3143 3226 2.125225 GGGTGGGGTCCCTCTTCT 59.875 66.667 8.15 0.00 43.85 2.85
3144 3227 1.394963 GGGTGGGGTCCCTCTTCTA 59.605 63.158 8.15 0.00 43.85 2.10
3145 3228 0.253020 GGGTGGGGTCCCTCTTCTAA 60.253 60.000 8.15 0.00 43.85 2.10
3146 3229 1.628327 GGGTGGGGTCCCTCTTCTAAT 60.628 57.143 8.15 0.00 43.85 1.73
3147 3230 2.206223 GGTGGGGTCCCTCTTCTAATT 58.794 52.381 8.15 0.00 36.94 1.40
3148 3231 2.581246 GGTGGGGTCCCTCTTCTAATTT 59.419 50.000 8.15 0.00 36.94 1.82
3149 3232 3.371702 GGTGGGGTCCCTCTTCTAATTTC 60.372 52.174 8.15 0.00 36.94 2.17
3150 3233 2.850568 TGGGGTCCCTCTTCTAATTTCC 59.149 50.000 8.15 0.00 36.94 3.13
3151 3234 3.124066 GGGGTCCCTCTTCTAATTTCCT 58.876 50.000 8.15 0.00 0.00 3.36
3152 3235 3.136809 GGGGTCCCTCTTCTAATTTCCTC 59.863 52.174 8.15 0.00 0.00 3.71
3153 3236 3.136809 GGGTCCCTCTTCTAATTTCCTCC 59.863 52.174 0.00 0.00 0.00 4.30
3154 3237 3.780850 GGTCCCTCTTCTAATTTCCTCCA 59.219 47.826 0.00 0.00 0.00 3.86
3155 3238 4.227527 GGTCCCTCTTCTAATTTCCTCCAA 59.772 45.833 0.00 0.00 0.00 3.53
3156 3239 5.186942 GTCCCTCTTCTAATTTCCTCCAAC 58.813 45.833 0.00 0.00 0.00 3.77
3157 3240 5.045505 GTCCCTCTTCTAATTTCCTCCAACT 60.046 44.000 0.00 0.00 0.00 3.16
3158 3241 5.045578 TCCCTCTTCTAATTTCCTCCAACTG 60.046 44.000 0.00 0.00 0.00 3.16
3159 3242 5.045578 CCCTCTTCTAATTTCCTCCAACTGA 60.046 44.000 0.00 0.00 0.00 3.41
3160 3243 6.476378 CCTCTTCTAATTTCCTCCAACTGAA 58.524 40.000 0.00 0.00 0.00 3.02
3161 3244 6.942576 CCTCTTCTAATTTCCTCCAACTGAAA 59.057 38.462 0.00 0.00 35.17 2.69
3162 3245 7.448469 CCTCTTCTAATTTCCTCCAACTGAAAA 59.552 37.037 0.00 0.00 34.43 2.29
3163 3246 8.760980 TCTTCTAATTTCCTCCAACTGAAAAA 57.239 30.769 0.00 0.00 34.43 1.94
3164 3247 9.367160 TCTTCTAATTTCCTCCAACTGAAAAAT 57.633 29.630 0.00 0.00 34.43 1.82
3165 3248 9.415544 CTTCTAATTTCCTCCAACTGAAAAATG 57.584 33.333 0.00 0.00 34.43 2.32
3166 3249 7.378181 TCTAATTTCCTCCAACTGAAAAATGC 58.622 34.615 0.00 0.00 34.43 3.56
3167 3250 4.335400 TTTCCTCCAACTGAAAAATGCC 57.665 40.909 0.00 0.00 0.00 4.40
3168 3251 2.956132 TCCTCCAACTGAAAAATGCCA 58.044 42.857 0.00 0.00 0.00 4.92
3169 3252 2.627699 TCCTCCAACTGAAAAATGCCAC 59.372 45.455 0.00 0.00 0.00 5.01
3170 3253 2.289010 CCTCCAACTGAAAAATGCCACC 60.289 50.000 0.00 0.00 0.00 4.61
3171 3254 2.629617 CTCCAACTGAAAAATGCCACCT 59.370 45.455 0.00 0.00 0.00 4.00
3172 3255 3.826157 CTCCAACTGAAAAATGCCACCTA 59.174 43.478 0.00 0.00 0.00 3.08
3173 3256 4.219115 TCCAACTGAAAAATGCCACCTAA 58.781 39.130 0.00 0.00 0.00 2.69
3174 3257 4.280677 TCCAACTGAAAAATGCCACCTAAG 59.719 41.667 0.00 0.00 0.00 2.18
3175 3258 3.942130 ACTGAAAAATGCCACCTAAGC 57.058 42.857 0.00 0.00 0.00 3.09
3176 3259 2.562738 ACTGAAAAATGCCACCTAAGCC 59.437 45.455 0.00 0.00 0.00 4.35
3177 3260 2.562298 CTGAAAAATGCCACCTAAGCCA 59.438 45.455 0.00 0.00 0.00 4.75
3178 3261 3.172339 TGAAAAATGCCACCTAAGCCAT 58.828 40.909 0.00 0.00 0.00 4.40
3179 3262 3.582208 TGAAAAATGCCACCTAAGCCATT 59.418 39.130 0.00 0.00 0.00 3.16
3180 3263 4.774726 TGAAAAATGCCACCTAAGCCATTA 59.225 37.500 0.00 0.00 0.00 1.90
3181 3264 4.736126 AAAATGCCACCTAAGCCATTAC 57.264 40.909 0.00 0.00 0.00 1.89
3182 3265 1.967319 ATGCCACCTAAGCCATTACG 58.033 50.000 0.00 0.00 0.00 3.18
3183 3266 0.616371 TGCCACCTAAGCCATTACGT 59.384 50.000 0.00 0.00 0.00 3.57
3184 3267 1.003812 TGCCACCTAAGCCATTACGTT 59.996 47.619 0.00 0.00 0.00 3.99
3185 3268 2.236644 TGCCACCTAAGCCATTACGTTA 59.763 45.455 0.00 0.00 0.00 3.18
3186 3269 2.610833 GCCACCTAAGCCATTACGTTAC 59.389 50.000 0.00 0.00 0.00 2.50
3187 3270 3.680754 GCCACCTAAGCCATTACGTTACT 60.681 47.826 0.00 0.00 0.00 2.24
3188 3271 4.510571 CCACCTAAGCCATTACGTTACTT 58.489 43.478 0.00 0.00 0.00 2.24
3189 3272 4.939439 CCACCTAAGCCATTACGTTACTTT 59.061 41.667 0.00 0.00 0.00 2.66
3190 3273 6.108015 CCACCTAAGCCATTACGTTACTTTA 58.892 40.000 0.00 0.00 0.00 1.85
3191 3274 6.036408 CCACCTAAGCCATTACGTTACTTTAC 59.964 42.308 0.00 0.00 0.00 2.01
3192 3275 5.807011 ACCTAAGCCATTACGTTACTTTACG 59.193 40.000 0.00 0.00 46.52 3.18
3205 3288 5.720339 CGTTACTTTACGTTTGATTGCTACG 59.280 40.000 0.00 0.00 40.85 3.51
3207 3290 7.409238 CGTTACTTTACGTTTGATTGCTACGTA 60.409 37.037 0.00 0.00 45.59 3.57
3223 3306 2.979006 CGTAAGTGTAGCATTGCTCG 57.021 50.000 15.81 6.85 40.44 5.03
3224 3307 1.588404 CGTAAGTGTAGCATTGCTCGG 59.412 52.381 15.81 0.00 40.44 4.63
3225 3308 1.933853 GTAAGTGTAGCATTGCTCGGG 59.066 52.381 15.81 0.00 40.44 5.14
3226 3309 0.324943 AAGTGTAGCATTGCTCGGGT 59.675 50.000 15.81 0.00 40.44 5.28
3227 3310 0.324943 AGTGTAGCATTGCTCGGGTT 59.675 50.000 15.81 0.00 40.44 4.11
3228 3311 1.165270 GTGTAGCATTGCTCGGGTTT 58.835 50.000 15.81 0.00 40.44 3.27
3229 3312 1.539827 GTGTAGCATTGCTCGGGTTTT 59.460 47.619 15.81 0.00 40.44 2.43
3230 3313 1.539388 TGTAGCATTGCTCGGGTTTTG 59.461 47.619 15.81 0.00 40.44 2.44
3231 3314 0.525761 TAGCATTGCTCGGGTTTTGC 59.474 50.000 15.81 0.00 40.44 3.68
3232 3315 1.737735 GCATTGCTCGGGTTTTGCC 60.738 57.895 0.16 0.00 0.00 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
321 324 5.164233 CAAGTATCAGTCATCACACGTTCT 58.836 41.667 0.00 0.00 0.00 3.01
340 343 4.026356 AGGTTTAGCTGATCTTGCAAGT 57.974 40.909 25.19 13.20 0.00 3.16
453 463 9.130661 TGAATGATACATTTTCCGGTTAATCAT 57.869 29.630 0.00 5.48 35.04 2.45
501 511 7.494625 GCATAAAATAGTGGAGTAGTAGCAACA 59.505 37.037 0.00 0.00 0.00 3.33
534 547 2.424557 AGAAGTTGAGATGTGCAGCAG 58.575 47.619 0.00 0.00 0.00 4.24
595 609 3.328382 TTGGAGAGGTTCGGTTATGTG 57.672 47.619 0.00 0.00 0.00 3.21
599 616 5.070047 GGAGATTATTGGAGAGGTTCGGTTA 59.930 44.000 0.00 0.00 0.00 2.85
890 924 0.039180 GGGGGTCCTTTTGTAGGTGG 59.961 60.000 0.00 0.00 45.03 4.61
892 926 1.639108 GATGGGGGTCCTTTTGTAGGT 59.361 52.381 0.00 0.00 45.03 3.08
914 948 0.107017 CAATGCAGGTAGGGTGGAGG 60.107 60.000 0.00 0.00 0.00 4.30
916 950 0.327924 CACAATGCAGGTAGGGTGGA 59.672 55.000 0.00 0.00 0.00 4.02
944 978 1.979308 GGAAAGGGGATAGCTAGGGAC 59.021 57.143 0.00 0.00 0.00 4.46
993 1027 1.043816 TGATCGAGCCCATCCTCTTC 58.956 55.000 0.00 0.00 0.00 2.87
1034 1074 4.175489 CGTCCTCATCGTCGGCGT 62.175 66.667 10.18 0.00 39.49 5.68
1035 1075 2.663630 AATCGTCCTCATCGTCGGCG 62.664 60.000 1.15 1.15 39.92 6.46
1036 1076 0.527817 AAATCGTCCTCATCGTCGGC 60.528 55.000 0.00 0.00 0.00 5.54
1037 1077 1.065701 AGAAATCGTCCTCATCGTCGG 59.934 52.381 0.00 0.00 0.00 4.79
1038 1078 2.476873 AGAAATCGTCCTCATCGTCG 57.523 50.000 0.00 0.00 0.00 5.12
1039 1079 4.288670 TGTAGAAATCGTCCTCATCGTC 57.711 45.455 0.00 0.00 0.00 4.20
1044 1084 2.361119 CCGGATGTAGAAATCGTCCTCA 59.639 50.000 0.00 0.00 38.44 3.86
1119 1159 4.585162 GCATAGATCGTATATACCCTGGCT 59.415 45.833 7.30 1.50 0.00 4.75
1131 1171 7.145985 GGTACTGAAATTGAGCATAGATCGTA 58.854 38.462 0.00 0.00 0.00 3.43
1133 1173 5.406780 GGGTACTGAAATTGAGCATAGATCG 59.593 44.000 0.00 0.00 0.00 3.69
1136 1176 5.189736 AGTGGGTACTGAAATTGAGCATAGA 59.810 40.000 0.00 0.00 35.34 1.98
1179 1220 2.712539 CACGCGAAAGGCAACACA 59.287 55.556 15.93 0.00 43.84 3.72
1181 1222 1.999071 AAAGCACGCGAAAGGCAACA 61.999 50.000 15.93 0.00 43.84 3.33
1184 1225 1.435515 AAAAAGCACGCGAAAGGCA 59.564 47.368 15.93 0.00 43.84 4.75
1255 1296 5.106948 ACAATCGTAACACAAGAATGCAGAG 60.107 40.000 0.00 0.00 0.00 3.35
1264 1305 8.858003 ATCTATGACTACAATCGTAACACAAG 57.142 34.615 0.00 0.00 0.00 3.16
1273 1314 9.645059 AATTGTATGGATCTATGACTACAATCG 57.355 33.333 14.63 0.00 38.28 3.34
1367 1419 4.414846 ACAAGATCTAGCAAGGGATCCAAT 59.585 41.667 15.23 0.00 39.12 3.16
1389 1441 8.315391 TCTATGAGCATATGAGCAAAATACAC 57.685 34.615 6.97 0.00 36.85 2.90
1597 1651 4.942761 TGTAAACTGAAACGGAGGTAGT 57.057 40.909 0.00 0.00 0.00 2.73
1598 1652 5.295152 ACTTGTAAACTGAAACGGAGGTAG 58.705 41.667 0.00 0.00 0.00 3.18
1599 1653 5.280654 ACTTGTAAACTGAAACGGAGGTA 57.719 39.130 0.00 0.00 0.00 3.08
1600 1654 4.124970 GACTTGTAAACTGAAACGGAGGT 58.875 43.478 0.00 0.00 0.00 3.85
1601 1655 3.497262 GGACTTGTAAACTGAAACGGAGG 59.503 47.826 0.00 0.00 0.00 4.30
1602 1656 4.377897 AGGACTTGTAAACTGAAACGGAG 58.622 43.478 0.00 0.00 0.00 4.63
1603 1657 4.411256 AGGACTTGTAAACTGAAACGGA 57.589 40.909 0.00 0.00 0.00 4.69
1604 1658 4.149396 CGTAGGACTTGTAAACTGAAACGG 59.851 45.833 0.00 0.00 0.00 4.44
1605 1659 4.375706 GCGTAGGACTTGTAAACTGAAACG 60.376 45.833 0.00 0.00 0.00 3.60
1606 1660 4.375706 CGCGTAGGACTTGTAAACTGAAAC 60.376 45.833 0.00 0.00 0.00 2.78
1607 1661 3.737266 CGCGTAGGACTTGTAAACTGAAA 59.263 43.478 0.00 0.00 0.00 2.69
1608 1662 3.243501 ACGCGTAGGACTTGTAAACTGAA 60.244 43.478 11.67 0.00 0.00 3.02
1609 1663 2.294233 ACGCGTAGGACTTGTAAACTGA 59.706 45.455 11.67 0.00 0.00 3.41
1610 1664 2.669364 ACGCGTAGGACTTGTAAACTG 58.331 47.619 11.67 0.00 0.00 3.16
1611 1665 4.708726 ATACGCGTAGGACTTGTAAACT 57.291 40.909 24.78 0.00 0.00 2.66
1612 1666 4.735338 GGTATACGCGTAGGACTTGTAAAC 59.265 45.833 24.78 6.78 0.00 2.01
1613 1667 4.640201 AGGTATACGCGTAGGACTTGTAAA 59.360 41.667 24.78 0.00 0.00 2.01
1614 1668 4.199310 AGGTATACGCGTAGGACTTGTAA 58.801 43.478 24.78 0.00 0.00 2.41
1615 1669 3.808728 AGGTATACGCGTAGGACTTGTA 58.191 45.455 24.78 7.25 0.00 2.41
1616 1670 2.648059 AGGTATACGCGTAGGACTTGT 58.352 47.619 24.78 8.30 0.00 3.16
1617 1671 3.188048 CCTAGGTATACGCGTAGGACTTG 59.812 52.174 24.78 19.23 45.08 3.16
1618 1672 3.181450 ACCTAGGTATACGCGTAGGACTT 60.181 47.826 25.95 21.88 45.08 3.01
1619 1673 2.370189 ACCTAGGTATACGCGTAGGACT 59.630 50.000 25.95 22.11 45.08 3.85
1620 1674 2.772287 ACCTAGGTATACGCGTAGGAC 58.228 52.381 25.95 22.99 45.08 3.85
1621 1675 3.141398 CAACCTAGGTATACGCGTAGGA 58.859 50.000 25.95 14.03 45.08 2.94
1622 1676 2.351157 GCAACCTAGGTATACGCGTAGG 60.351 54.545 24.78 21.85 46.64 3.18
1623 1677 2.351157 GGCAACCTAGGTATACGCGTAG 60.351 54.545 24.78 11.28 0.00 3.51
1624 1678 1.608590 GGCAACCTAGGTATACGCGTA 59.391 52.381 22.94 22.94 0.00 4.42
1625 1679 0.386838 GGCAACCTAGGTATACGCGT 59.613 55.000 19.17 19.17 0.00 6.01
1626 1680 0.386476 TGGCAACCTAGGTATACGCG 59.614 55.000 16.67 3.53 0.00 6.01
1627 1681 2.607631 TTGGCAACCTAGGTATACGC 57.392 50.000 16.67 15.11 0.00 4.42
1628 1682 7.442969 TGATAAAATTGGCAACCTAGGTATACG 59.557 37.037 16.67 5.52 0.00 3.06
1629 1683 8.565416 GTGATAAAATTGGCAACCTAGGTATAC 58.435 37.037 16.67 8.74 0.00 1.47
1630 1684 7.722285 GGTGATAAAATTGGCAACCTAGGTATA 59.278 37.037 16.67 0.00 0.00 1.47
1631 1685 6.549736 GGTGATAAAATTGGCAACCTAGGTAT 59.450 38.462 16.67 0.83 0.00 2.73
1632 1686 5.889289 GGTGATAAAATTGGCAACCTAGGTA 59.111 40.000 16.67 0.00 0.00 3.08
1633 1687 4.709886 GGTGATAAAATTGGCAACCTAGGT 59.290 41.667 9.21 9.21 0.00 3.08
1634 1688 4.099419 GGGTGATAAAATTGGCAACCTAGG 59.901 45.833 7.41 7.41 35.26 3.02
1635 1689 4.956075 AGGGTGATAAAATTGGCAACCTAG 59.044 41.667 0.00 0.00 46.13 3.02
1636 1690 4.941713 AGGGTGATAAAATTGGCAACCTA 58.058 39.130 0.00 0.00 46.13 3.08
1637 1691 3.790126 AGGGTGATAAAATTGGCAACCT 58.210 40.909 0.00 0.00 43.35 3.50
1638 1692 5.669164 TTAGGGTGATAAAATTGGCAACC 57.331 39.130 0.00 0.00 38.39 3.77
1687 1741 9.251440 ACTTTGGAGTTTCTACTTTTAAAAGGT 57.749 29.630 27.23 16.86 34.81 3.50
1738 1792 9.920946 ATTTGACCAACCTAATACAAGTCATAT 57.079 29.630 0.00 0.00 33.21 1.78
1739 1793 9.747898 AATTTGACCAACCTAATACAAGTCATA 57.252 29.630 0.00 0.00 33.21 2.15
1740 1794 8.522830 CAATTTGACCAACCTAATACAAGTCAT 58.477 33.333 0.00 0.00 33.21 3.06
1741 1795 7.721842 TCAATTTGACCAACCTAATACAAGTCA 59.278 33.333 0.00 0.00 0.00 3.41
1742 1796 8.021396 GTCAATTTGACCAACCTAATACAAGTC 58.979 37.037 17.07 0.00 41.37 3.01
1743 1797 7.308348 CGTCAATTTGACCAACCTAATACAAGT 60.308 37.037 20.87 0.00 44.20 3.16
1744 1798 7.021196 CGTCAATTTGACCAACCTAATACAAG 58.979 38.462 20.87 1.46 44.20 3.16
1745 1799 6.711194 TCGTCAATTTGACCAACCTAATACAA 59.289 34.615 20.87 0.00 44.20 2.41
1746 1800 6.148150 GTCGTCAATTTGACCAACCTAATACA 59.852 38.462 20.87 0.00 44.20 2.29
1747 1801 6.540205 GTCGTCAATTTGACCAACCTAATAC 58.460 40.000 20.87 5.03 44.20 1.89
1748 1802 6.730960 GTCGTCAATTTGACCAACCTAATA 57.269 37.500 20.87 0.00 44.20 0.98
1749 1803 5.622770 GTCGTCAATTTGACCAACCTAAT 57.377 39.130 20.87 0.00 44.20 1.73
1757 1811 5.201262 ACCCCTAGGTCGTCAATTTGACC 62.201 52.174 20.87 10.15 46.45 4.02
1758 1812 2.027469 ACCCCTAGGTCGTCAATTTGAC 60.027 50.000 17.76 17.76 46.45 3.18
1759 1813 2.262637 ACCCCTAGGTCGTCAATTTGA 58.737 47.619 8.29 0.00 46.45 2.69
1760 1814 2.781681 ACCCCTAGGTCGTCAATTTG 57.218 50.000 8.29 0.00 46.45 2.32
1761 1815 2.167075 CGTACCCCTAGGTCGTCAATTT 59.833 50.000 8.29 0.00 46.45 1.82
1762 1816 1.753073 CGTACCCCTAGGTCGTCAATT 59.247 52.381 8.29 0.00 46.45 2.32
1763 1817 1.396653 CGTACCCCTAGGTCGTCAAT 58.603 55.000 8.29 0.00 46.45 2.57
1764 1818 1.315257 GCGTACCCCTAGGTCGTCAA 61.315 60.000 8.29 0.00 46.45 3.18
1765 1819 1.750399 GCGTACCCCTAGGTCGTCA 60.750 63.158 8.29 0.00 46.45 4.35
1766 1820 2.828128 CGCGTACCCCTAGGTCGTC 61.828 68.421 8.29 3.46 46.45 4.20
1767 1821 2.825836 CGCGTACCCCTAGGTCGT 60.826 66.667 8.29 6.00 46.45 4.34
1768 1822 4.261781 GCGCGTACCCCTAGGTCG 62.262 72.222 8.43 8.12 46.45 4.79
1769 1823 2.496291 ATGCGCGTACCCCTAGGTC 61.496 63.158 8.43 0.00 46.45 3.85
1771 1825 2.029073 CATGCGCGTACCCCTAGG 59.971 66.667 8.43 0.06 40.04 3.02
1772 1826 2.661866 GCATGCGCGTACCCCTAG 60.662 66.667 8.43 0.00 0.00 3.02
1773 1827 4.230002 GGCATGCGCGTACCCCTA 62.230 66.667 12.44 0.00 39.92 3.53
1777 1831 3.726595 TACAGGGCATGCGCGTACC 62.727 63.158 26.71 10.65 39.92 3.34
1778 1832 1.363145 TTTACAGGGCATGCGCGTAC 61.363 55.000 26.71 5.72 39.92 3.67
1779 1833 1.079057 TTTACAGGGCATGCGCGTA 60.079 52.632 26.71 25.35 39.92 4.42
1780 1834 2.359354 TTTACAGGGCATGCGCGT 60.359 55.556 26.71 26.25 39.92 6.01
1781 1835 2.100216 GTTTACAGGGCATGCGCG 59.900 61.111 26.71 22.63 39.92 6.86
1782 1836 1.137404 CAGTTTACAGGGCATGCGC 59.863 57.895 26.04 26.04 37.44 6.09
1783 1837 0.729116 CTCAGTTTACAGGGCATGCG 59.271 55.000 12.44 0.00 0.00 4.73
1784 1838 2.012673 CTCTCAGTTTACAGGGCATGC 58.987 52.381 9.90 9.90 0.00 4.06
1785 1839 3.196469 TCTCTCTCAGTTTACAGGGCATG 59.804 47.826 0.00 0.00 0.00 4.06
1786 1840 3.445008 TCTCTCTCAGTTTACAGGGCAT 58.555 45.455 0.00 0.00 0.00 4.40
1787 1841 2.828520 CTCTCTCTCAGTTTACAGGGCA 59.171 50.000 0.00 0.00 0.00 5.36
1788 1842 2.167487 CCTCTCTCTCAGTTTACAGGGC 59.833 54.545 0.00 0.00 0.00 5.19
1789 1843 3.436243 ACCTCTCTCTCAGTTTACAGGG 58.564 50.000 0.00 0.00 0.00 4.45
1790 1844 5.258051 ACTACCTCTCTCTCAGTTTACAGG 58.742 45.833 0.00 0.00 0.00 4.00
1791 1845 6.879993 TGTACTACCTCTCTCTCAGTTTACAG 59.120 42.308 0.00 0.00 0.00 2.74
1792 1846 6.776744 TGTACTACCTCTCTCTCAGTTTACA 58.223 40.000 0.00 0.00 0.00 2.41
1793 1847 7.553402 TGATGTACTACCTCTCTCTCAGTTTAC 59.447 40.741 0.00 0.00 0.00 2.01
1794 1848 7.631007 TGATGTACTACCTCTCTCTCAGTTTA 58.369 38.462 0.00 0.00 0.00 2.01
1795 1849 6.486056 TGATGTACTACCTCTCTCTCAGTTT 58.514 40.000 0.00 0.00 0.00 2.66
1796 1850 6.068461 TGATGTACTACCTCTCTCTCAGTT 57.932 41.667 0.00 0.00 0.00 3.16
1797 1851 5.702065 TGATGTACTACCTCTCTCTCAGT 57.298 43.478 0.00 0.00 0.00 3.41
1799 1853 9.898152 CATATATGATGTACTACCTCTCTCTCA 57.102 37.037 6.92 0.00 0.00 3.27
1800 1854 9.337396 CCATATATGATGTACTACCTCTCTCTC 57.663 40.741 14.54 0.00 0.00 3.20
1801 1855 9.063484 TCCATATATGATGTACTACCTCTCTCT 57.937 37.037 14.54 0.00 0.00 3.10
1802 1856 9.337396 CTCCATATATGATGTACTACCTCTCTC 57.663 40.741 14.54 0.00 0.00 3.20
1803 1857 8.841757 ACTCCATATATGATGTACTACCTCTCT 58.158 37.037 14.54 0.00 0.00 3.10
1810 1864 9.920946 TGCATCTACTCCATATATGATGTACTA 57.079 33.333 14.54 6.21 35.22 1.82
1811 1865 8.829373 TGCATCTACTCCATATATGATGTACT 57.171 34.615 14.54 3.08 35.22 2.73
1812 1866 9.875691 TTTGCATCTACTCCATATATGATGTAC 57.124 33.333 14.54 5.70 35.22 2.90
1916 1970 3.805207 ACCGGGAGTTAATTCATACAGC 58.195 45.455 6.32 0.00 0.00 4.40
1933 1987 1.453155 CACCAGGAAATTGAGACCGG 58.547 55.000 0.00 0.00 0.00 5.28
2052 2111 6.452494 TCAAAGGAGTGATGCTACTACTAC 57.548 41.667 2.23 0.00 41.00 2.73
2053 2112 7.124298 ACAATCAAAGGAGTGATGCTACTACTA 59.876 37.037 0.00 0.00 41.00 1.82
2054 2113 6.070538 ACAATCAAAGGAGTGATGCTACTACT 60.071 38.462 0.00 0.00 43.72 2.57
2134 2194 9.405587 TCCGAACTTAATTTGTGAATGATTTTC 57.594 29.630 0.00 0.00 0.00 2.29
2190 2250 1.963855 CAATGGCGGACCGTCAACA 60.964 57.895 27.15 14.59 46.66 3.33
2213 2273 0.687354 GGTCTTGTCCTTCTGCTCCA 59.313 55.000 0.00 0.00 0.00 3.86
2218 2278 1.296715 CCGGGGTCTTGTCCTTCTG 59.703 63.158 0.00 0.00 0.00 3.02
2424 2487 8.740906 TCTTAGGTTCACATACAAACAAACAAA 58.259 29.630 0.00 0.00 0.00 2.83
2428 2491 6.488683 CCCTCTTAGGTTCACATACAAACAAA 59.511 38.462 0.00 0.00 31.93 2.83
2429 2492 6.001460 CCCTCTTAGGTTCACATACAAACAA 58.999 40.000 0.00 0.00 31.93 2.83
2430 2493 5.308497 TCCCTCTTAGGTTCACATACAAACA 59.692 40.000 0.00 0.00 31.93 2.83
2431 2494 5.642491 GTCCCTCTTAGGTTCACATACAAAC 59.358 44.000 0.00 0.00 31.93 2.93
2432 2495 5.280317 GGTCCCTCTTAGGTTCACATACAAA 60.280 44.000 0.00 0.00 31.93 2.83
2497 2561 1.789054 CGCCGGAGCATTAAACGAAAC 60.789 52.381 5.05 0.00 39.83 2.78
2512 2576 0.518195 ACGGACAAAATAAACGCCGG 59.482 50.000 0.00 0.00 42.76 6.13
2513 2577 2.235855 GAACGGACAAAATAAACGCCG 58.764 47.619 0.00 0.00 43.95 6.46
2528 2592 0.450482 GTTGACACGCATTCGAACGG 60.450 55.000 12.10 3.97 39.41 4.44
2534 2598 2.118228 TTTGCTGTTGACACGCATTC 57.882 45.000 8.38 0.00 32.85 2.67
2584 2648 4.321718 CAGGCATTCGATGAATAGACCAT 58.678 43.478 0.00 0.00 30.44 3.55
2585 2649 3.732212 CAGGCATTCGATGAATAGACCA 58.268 45.455 0.00 0.00 30.44 4.02
2616 2681 9.559732 TCTTCAACAAATTGTCTATCTTTCTCA 57.440 29.630 0.00 0.00 37.11 3.27
2623 2688 7.008628 CGCCAAATCTTCAACAAATTGTCTATC 59.991 37.037 0.00 0.00 37.11 2.08
2646 2711 0.955905 TACAAAGGCTTCCAAACGCC 59.044 50.000 0.00 0.00 46.65 5.68
2647 2712 4.632538 ATATACAAAGGCTTCCAAACGC 57.367 40.909 0.00 0.00 0.00 4.84
2649 2714 8.682710 TGTTCATATATACAAAGGCTTCCAAAC 58.317 33.333 0.00 0.00 0.00 2.93
2665 2730 8.800332 GGCTTGAAGATTGGATTGTTCATATAT 58.200 33.333 0.00 0.00 0.00 0.86
2666 2731 7.779326 TGGCTTGAAGATTGGATTGTTCATATA 59.221 33.333 0.00 0.00 0.00 0.86
2667 2732 6.608405 TGGCTTGAAGATTGGATTGTTCATAT 59.392 34.615 0.00 0.00 0.00 1.78
2674 2739 3.508793 AGTGTGGCTTGAAGATTGGATTG 59.491 43.478 0.00 0.00 0.00 2.67
2699 2764 9.302345 CTATCGTCATTTCTAGTTCTTTGCTAA 57.698 33.333 0.00 0.00 0.00 3.09
2751 2816 8.874156 AGATATAGGAGATGTCACTGCATTTTA 58.126 33.333 0.00 0.00 0.00 1.52
2756 2821 9.348476 GATATAGATATAGGAGATGTCACTGCA 57.652 37.037 0.00 0.00 0.00 4.41
2783 2854 9.209175 GGGTTGTGTGTATTTTGCATTAATTAA 57.791 29.630 0.00 0.00 0.00 1.40
2784 2855 8.589338 AGGGTTGTGTGTATTTTGCATTAATTA 58.411 29.630 0.00 0.00 0.00 1.40
2785 2856 7.449247 AGGGTTGTGTGTATTTTGCATTAATT 58.551 30.769 0.00 0.00 0.00 1.40
2786 2857 7.003402 AGGGTTGTGTGTATTTTGCATTAAT 57.997 32.000 0.00 0.00 0.00 1.40
2873 2944 7.530861 GTCGATCGCTTTAACAAATTATGGATC 59.469 37.037 11.09 0.00 0.00 3.36
2901 2972 6.537566 GCTTTTGCGACATATATGGACATAG 58.462 40.000 16.96 11.63 34.86 2.23
3043 3126 7.981225 AGGCATTTTATAGGTGTAGCATTTTTG 59.019 33.333 0.00 0.00 0.00 2.44
3044 3127 8.078060 AGGCATTTTATAGGTGTAGCATTTTT 57.922 30.769 0.00 0.00 0.00 1.94
3045 3128 7.660030 AGGCATTTTATAGGTGTAGCATTTT 57.340 32.000 0.00 0.00 0.00 1.82
3046 3129 7.041372 CGTAGGCATTTTATAGGTGTAGCATTT 60.041 37.037 0.00 0.00 0.00 2.32
3047 3130 6.426937 CGTAGGCATTTTATAGGTGTAGCATT 59.573 38.462 0.00 0.00 0.00 3.56
3048 3131 5.932303 CGTAGGCATTTTATAGGTGTAGCAT 59.068 40.000 0.00 0.00 0.00 3.79
3049 3132 5.163385 ACGTAGGCATTTTATAGGTGTAGCA 60.163 40.000 0.00 0.00 0.00 3.49
3050 3133 5.295152 ACGTAGGCATTTTATAGGTGTAGC 58.705 41.667 0.00 0.00 0.00 3.58
3051 3134 7.594015 CAGTACGTAGGCATTTTATAGGTGTAG 59.406 40.741 0.00 0.00 0.00 2.74
3052 3135 7.068593 ACAGTACGTAGGCATTTTATAGGTGTA 59.931 37.037 0.00 0.00 0.00 2.90
3053 3136 6.127253 ACAGTACGTAGGCATTTTATAGGTGT 60.127 38.462 0.00 0.00 0.00 4.16
3054 3137 6.278363 ACAGTACGTAGGCATTTTATAGGTG 58.722 40.000 0.00 0.00 0.00 4.00
3055 3138 6.475596 ACAGTACGTAGGCATTTTATAGGT 57.524 37.500 0.00 0.00 0.00 3.08
3056 3139 7.113965 CGTAACAGTACGTAGGCATTTTATAGG 59.886 40.741 0.00 0.00 46.49 2.57
3057 3140 7.989609 CGTAACAGTACGTAGGCATTTTATAG 58.010 38.462 0.00 0.00 46.49 1.31
3058 3141 7.912949 CGTAACAGTACGTAGGCATTTTATA 57.087 36.000 0.00 0.00 46.49 0.98
3059 3142 6.817270 CGTAACAGTACGTAGGCATTTTAT 57.183 37.500 0.00 0.00 46.49 1.40
3072 3155 9.004146 GCAGTTAGTCTAATTACGTAACAGTAC 57.996 37.037 10.81 7.30 0.00 2.73
3073 3156 8.950210 AGCAGTTAGTCTAATTACGTAACAGTA 58.050 33.333 10.81 2.86 0.00 2.74
3074 3157 7.824672 AGCAGTTAGTCTAATTACGTAACAGT 58.175 34.615 10.81 1.73 0.00 3.55
3075 3158 9.778993 TTAGCAGTTAGTCTAATTACGTAACAG 57.221 33.333 10.81 10.92 0.00 3.16
3078 3161 9.956720 GGATTAGCAGTTAGTCTAATTACGTAA 57.043 33.333 11.02 11.02 36.09 3.18
3079 3162 8.571336 GGGATTAGCAGTTAGTCTAATTACGTA 58.429 37.037 0.00 0.00 36.09 3.57
3080 3163 7.287235 AGGGATTAGCAGTTAGTCTAATTACGT 59.713 37.037 0.00 0.00 36.09 3.57
3081 3164 7.659186 AGGGATTAGCAGTTAGTCTAATTACG 58.341 38.462 0.00 0.00 36.09 3.18
3082 3165 8.862085 AGAGGGATTAGCAGTTAGTCTAATTAC 58.138 37.037 0.00 0.00 36.09 1.89
3084 3167 7.922699 AGAGGGATTAGCAGTTAGTCTAATT 57.077 36.000 0.00 0.00 36.09 1.40
3085 3168 7.452189 GGTAGAGGGATTAGCAGTTAGTCTAAT 59.548 40.741 0.00 0.00 37.98 1.73
3086 3169 6.776603 GGTAGAGGGATTAGCAGTTAGTCTAA 59.223 42.308 0.00 0.00 0.00 2.10
3087 3170 6.305411 GGTAGAGGGATTAGCAGTTAGTCTA 58.695 44.000 0.00 0.00 0.00 2.59
3088 3171 5.141910 GGTAGAGGGATTAGCAGTTAGTCT 58.858 45.833 0.00 0.00 0.00 3.24
3089 3172 4.281435 GGGTAGAGGGATTAGCAGTTAGTC 59.719 50.000 0.00 0.00 0.00 2.59
3090 3173 4.224762 GGGTAGAGGGATTAGCAGTTAGT 58.775 47.826 0.00 0.00 0.00 2.24
3091 3174 3.579151 GGGGTAGAGGGATTAGCAGTTAG 59.421 52.174 0.00 0.00 0.00 2.34
3092 3175 3.584294 GGGGTAGAGGGATTAGCAGTTA 58.416 50.000 0.00 0.00 0.00 2.24
3093 3176 2.409570 GGGGTAGAGGGATTAGCAGTT 58.590 52.381 0.00 0.00 0.00 3.16
3094 3177 1.414685 GGGGGTAGAGGGATTAGCAGT 60.415 57.143 0.00 0.00 0.00 4.40
3095 3178 1.132689 AGGGGGTAGAGGGATTAGCAG 60.133 57.143 0.00 0.00 0.00 4.24
3096 3179 0.949582 AGGGGGTAGAGGGATTAGCA 59.050 55.000 0.00 0.00 0.00 3.49
3097 3180 1.132817 TCAGGGGGTAGAGGGATTAGC 60.133 57.143 0.00 0.00 0.00 3.09
3098 3181 3.569135 ATCAGGGGGTAGAGGGATTAG 57.431 52.381 0.00 0.00 0.00 1.73
3099 3182 3.441054 GGAATCAGGGGGTAGAGGGATTA 60.441 52.174 0.00 0.00 0.00 1.75
3100 3183 2.700540 GGAATCAGGGGGTAGAGGGATT 60.701 54.545 0.00 0.00 0.00 3.01
3101 3184 1.132365 GGAATCAGGGGGTAGAGGGAT 60.132 57.143 0.00 0.00 0.00 3.85
3102 3185 0.267960 GGAATCAGGGGGTAGAGGGA 59.732 60.000 0.00 0.00 0.00 4.20
3103 3186 0.030092 TGGAATCAGGGGGTAGAGGG 60.030 60.000 0.00 0.00 0.00 4.30
3104 3187 1.490910 GTTGGAATCAGGGGGTAGAGG 59.509 57.143 0.00 0.00 0.00 3.69
3105 3188 2.171448 CAGTTGGAATCAGGGGGTAGAG 59.829 54.545 0.00 0.00 0.00 2.43
3106 3189 2.196595 CAGTTGGAATCAGGGGGTAGA 58.803 52.381 0.00 0.00 0.00 2.59
3107 3190 1.212935 CCAGTTGGAATCAGGGGGTAG 59.787 57.143 0.00 0.00 37.39 3.18
3108 3191 1.295020 CCAGTTGGAATCAGGGGGTA 58.705 55.000 0.00 0.00 37.39 3.69
3109 3192 1.509548 CCCAGTTGGAATCAGGGGGT 61.510 60.000 0.00 0.00 37.39 4.95
3110 3193 1.307647 CCCAGTTGGAATCAGGGGG 59.692 63.158 0.00 0.00 37.39 5.40
3111 3194 0.323725 CACCCAGTTGGAATCAGGGG 60.324 60.000 0.00 0.00 43.96 4.79
3112 3195 0.323725 CCACCCAGTTGGAATCAGGG 60.324 60.000 0.00 0.00 45.20 4.45
3113 3196 0.323725 CCCACCCAGTTGGAATCAGG 60.324 60.000 0.00 0.00 39.24 3.86
3114 3197 0.323725 CCCCACCCAGTTGGAATCAG 60.324 60.000 0.00 0.00 39.24 2.90
3115 3198 1.071314 ACCCCACCCAGTTGGAATCA 61.071 55.000 0.00 0.00 39.24 2.57
3116 3199 0.323451 GACCCCACCCAGTTGGAATC 60.323 60.000 0.00 0.00 39.24 2.52
3117 3200 1.774300 GACCCCACCCAGTTGGAAT 59.226 57.895 0.00 0.00 39.24 3.01
3118 3201 2.466186 GGACCCCACCCAGTTGGAA 61.466 63.158 0.00 0.00 39.24 3.53
3119 3202 2.856988 GGACCCCACCCAGTTGGA 60.857 66.667 0.00 0.00 39.24 3.53
3127 3210 1.894699 ATTAGAAGAGGGACCCCACC 58.105 55.000 7.00 0.00 38.92 4.61
3128 3211 3.371702 GGAAATTAGAAGAGGGACCCCAC 60.372 52.174 7.00 1.55 38.92 4.61
3129 3212 2.850568 GGAAATTAGAAGAGGGACCCCA 59.149 50.000 7.00 0.00 38.92 4.96
3130 3213 3.124066 AGGAAATTAGAAGAGGGACCCC 58.876 50.000 7.00 1.17 0.00 4.95
3131 3214 3.136809 GGAGGAAATTAGAAGAGGGACCC 59.863 52.174 0.59 0.59 0.00 4.46
3132 3215 3.780850 TGGAGGAAATTAGAAGAGGGACC 59.219 47.826 0.00 0.00 0.00 4.46
3133 3216 5.045505 AGTTGGAGGAAATTAGAAGAGGGAC 60.046 44.000 0.00 0.00 0.00 4.46
3134 3217 5.045578 CAGTTGGAGGAAATTAGAAGAGGGA 60.046 44.000 0.00 0.00 0.00 4.20
3135 3218 5.045578 TCAGTTGGAGGAAATTAGAAGAGGG 60.046 44.000 0.00 0.00 0.00 4.30
3136 3219 6.054860 TCAGTTGGAGGAAATTAGAAGAGG 57.945 41.667 0.00 0.00 0.00 3.69
3137 3220 7.986085 TTTCAGTTGGAGGAAATTAGAAGAG 57.014 36.000 0.00 0.00 0.00 2.85
3138 3221 8.760980 TTTTTCAGTTGGAGGAAATTAGAAGA 57.239 30.769 0.00 0.00 33.43 2.87
3139 3222 9.415544 CATTTTTCAGTTGGAGGAAATTAGAAG 57.584 33.333 0.00 0.00 33.43 2.85
3140 3223 7.872483 GCATTTTTCAGTTGGAGGAAATTAGAA 59.128 33.333 0.00 0.00 33.43 2.10
3141 3224 7.378181 GCATTTTTCAGTTGGAGGAAATTAGA 58.622 34.615 0.00 0.00 33.43 2.10
3142 3225 6.591448 GGCATTTTTCAGTTGGAGGAAATTAG 59.409 38.462 0.00 0.00 33.43 1.73
3143 3226 6.042552 TGGCATTTTTCAGTTGGAGGAAATTA 59.957 34.615 0.00 0.00 33.43 1.40
3144 3227 5.163216 TGGCATTTTTCAGTTGGAGGAAATT 60.163 36.000 0.00 0.00 33.43 1.82
3145 3228 4.347583 TGGCATTTTTCAGTTGGAGGAAAT 59.652 37.500 0.00 0.00 33.43 2.17
3146 3229 3.708631 TGGCATTTTTCAGTTGGAGGAAA 59.291 39.130 0.00 0.00 0.00 3.13
3147 3230 3.069443 GTGGCATTTTTCAGTTGGAGGAA 59.931 43.478 0.00 0.00 0.00 3.36
3148 3231 2.627699 GTGGCATTTTTCAGTTGGAGGA 59.372 45.455 0.00 0.00 0.00 3.71
3149 3232 2.289010 GGTGGCATTTTTCAGTTGGAGG 60.289 50.000 0.00 0.00 0.00 4.30
3150 3233 2.629617 AGGTGGCATTTTTCAGTTGGAG 59.370 45.455 0.00 0.00 0.00 3.86
3151 3234 2.676748 AGGTGGCATTTTTCAGTTGGA 58.323 42.857 0.00 0.00 0.00 3.53
3152 3235 4.559153 CTTAGGTGGCATTTTTCAGTTGG 58.441 43.478 0.00 0.00 0.00 3.77
3153 3236 3.989817 GCTTAGGTGGCATTTTTCAGTTG 59.010 43.478 0.00 0.00 0.00 3.16
3154 3237 3.006859 GGCTTAGGTGGCATTTTTCAGTT 59.993 43.478 0.00 0.00 0.00 3.16
3155 3238 2.562738 GGCTTAGGTGGCATTTTTCAGT 59.437 45.455 0.00 0.00 0.00 3.41
3156 3239 2.562298 TGGCTTAGGTGGCATTTTTCAG 59.438 45.455 0.00 0.00 37.59 3.02
3157 3240 2.603021 TGGCTTAGGTGGCATTTTTCA 58.397 42.857 0.00 0.00 37.59 2.69
3164 3247 0.616371 ACGTAATGGCTTAGGTGGCA 59.384 50.000 0.00 0.00 46.31 4.92
3165 3248 1.746470 AACGTAATGGCTTAGGTGGC 58.254 50.000 0.00 0.00 36.38 5.01
3166 3249 4.133013 AGTAACGTAATGGCTTAGGTGG 57.867 45.455 0.00 0.00 36.38 4.61
3167 3250 6.237648 CGTAAAGTAACGTAATGGCTTAGGTG 60.238 42.308 0.00 0.00 36.38 4.00
3168 3251 5.807011 CGTAAAGTAACGTAATGGCTTAGGT 59.193 40.000 0.00 0.00 37.50 3.08
3169 3252 6.264909 CGTAAAGTAACGTAATGGCTTAGG 57.735 41.667 0.00 0.00 38.07 2.69
3191 3274 4.640805 ACACTTACGTAGCAATCAAACG 57.359 40.909 0.00 0.00 42.17 3.60
3201 3284 3.482472 CGAGCAATGCTACACTTACGTAG 59.518 47.826 8.12 0.00 39.88 3.51
3202 3285 3.431856 CGAGCAATGCTACACTTACGTA 58.568 45.455 8.12 0.00 39.88 3.57
3203 3286 2.259618 CGAGCAATGCTACACTTACGT 58.740 47.619 8.12 0.00 39.88 3.57
3204 3287 1.588404 CCGAGCAATGCTACACTTACG 59.412 52.381 8.12 5.43 39.88 3.18
3205 3288 1.933853 CCCGAGCAATGCTACACTTAC 59.066 52.381 8.12 0.00 39.88 2.34
3206 3289 1.553248 ACCCGAGCAATGCTACACTTA 59.447 47.619 8.12 0.00 39.88 2.24
3207 3290 0.324943 ACCCGAGCAATGCTACACTT 59.675 50.000 8.12 0.00 39.88 3.16
3208 3291 0.324943 AACCCGAGCAATGCTACACT 59.675 50.000 8.12 0.00 39.88 3.55
3209 3292 1.165270 AAACCCGAGCAATGCTACAC 58.835 50.000 8.12 0.00 39.88 2.90
3210 3293 1.539388 CAAAACCCGAGCAATGCTACA 59.461 47.619 8.12 0.00 39.88 2.74
3211 3294 1.732405 GCAAAACCCGAGCAATGCTAC 60.732 52.381 8.12 0.90 39.88 3.58
3212 3295 0.525761 GCAAAACCCGAGCAATGCTA 59.474 50.000 8.12 0.00 39.88 3.49
3213 3296 1.290009 GCAAAACCCGAGCAATGCT 59.710 52.632 7.79 7.79 43.88 3.79
3214 3297 1.737735 GGCAAAACCCGAGCAATGC 60.738 57.895 0.00 0.00 0.00 3.56
3215 3298 0.318120 AAGGCAAAACCCGAGCAATG 59.682 50.000 0.00 0.00 40.58 2.82
3216 3299 1.047801 AAAGGCAAAACCCGAGCAAT 58.952 45.000 0.00 0.00 40.58 3.56
3217 3300 0.103937 CAAAGGCAAAACCCGAGCAA 59.896 50.000 0.00 0.00 40.58 3.91
3218 3301 1.739049 CAAAGGCAAAACCCGAGCA 59.261 52.632 0.00 0.00 40.58 4.26
3219 3302 1.664649 GCAAAGGCAAAACCCGAGC 60.665 57.895 0.00 0.00 40.58 5.03
3220 3303 1.006220 GGCAAAGGCAAAACCCGAG 60.006 57.895 0.00 0.00 43.71 4.63
3221 3304 1.758514 TGGCAAAGGCAAAACCCGA 60.759 52.632 0.00 0.00 43.71 5.14
3222 3305 1.594021 GTGGCAAAGGCAAAACCCG 60.594 57.895 0.00 0.00 43.71 5.28
3223 3306 1.227823 GGTGGCAAAGGCAAAACCC 60.228 57.895 0.00 0.00 43.71 4.11
3224 3307 0.532640 CAGGTGGCAAAGGCAAAACC 60.533 55.000 0.00 0.00 43.71 3.27
3225 3308 0.463620 TCAGGTGGCAAAGGCAAAAC 59.536 50.000 0.00 0.00 43.71 2.43
3226 3309 0.463620 GTCAGGTGGCAAAGGCAAAA 59.536 50.000 0.00 0.00 43.71 2.44
3227 3310 1.398958 GGTCAGGTGGCAAAGGCAAA 61.399 55.000 0.00 0.00 43.71 3.68
3228 3311 1.832167 GGTCAGGTGGCAAAGGCAA 60.832 57.895 0.00 0.00 43.71 4.52
3229 3312 2.203480 GGTCAGGTGGCAAAGGCA 60.203 61.111 0.00 0.00 43.71 4.75
3230 3313 2.991540 GGGTCAGGTGGCAAAGGC 60.992 66.667 0.00 0.00 40.13 4.35
3231 3314 1.303643 GAGGGTCAGGTGGCAAAGG 60.304 63.158 0.00 0.00 0.00 3.11
3232 3315 1.303643 GGAGGGTCAGGTGGCAAAG 60.304 63.158 0.00 0.00 0.00 2.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.