Multiple sequence alignment - TraesCS2B01G341200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G341200 chr2B 100.000 5161 0 0 1 5161 486840138 486845298 0.000000e+00 9531.0
1 TraesCS2B01G341200 chr2B 90.054 734 66 5 4431 5161 477530623 477531352 0.000000e+00 944.0
2 TraesCS2B01G341200 chr2B 88.933 750 76 5 4415 5161 23337055 23337800 0.000000e+00 918.0
3 TraesCS2B01G341200 chr2B 78.647 665 105 22 3515 4171 486952507 486953142 1.730000e-109 407.0
4 TraesCS2B01G341200 chr2B 100.000 121 0 0 203 323 486840221 486840341 1.870000e-54 224.0
5 TraesCS2B01G341200 chr2B 100.000 121 0 0 84 204 486840340 486840460 1.870000e-54 224.0
6 TraesCS2B01G341200 chr2D 86.257 1528 115 46 281 1736 413347711 413349215 0.000000e+00 1570.0
7 TraesCS2B01G341200 chr2D 93.233 1064 52 9 1980 3024 413352031 413353093 0.000000e+00 1548.0
8 TraesCS2B01G341200 chr2D 96.625 800 23 3 3494 4290 413353516 413354314 0.000000e+00 1325.0
9 TraesCS2B01G341200 chr2D 79.052 654 106 19 3515 4163 413691315 413691942 2.220000e-113 420.0
10 TraesCS2B01G341200 chr2D 93.333 225 9 2 1775 1994 413349294 413349517 1.390000e-85 327.0
11 TraesCS2B01G341200 chr2D 90.870 230 14 6 3045 3267 413353155 413353384 8.400000e-78 302.0
12 TraesCS2B01G341200 chr2D 93.162 117 8 0 3267 3383 81455760 81455876 6.870000e-39 172.0
13 TraesCS2B01G341200 chr2A 96.094 896 28 6 3494 4385 580384900 580385792 0.000000e+00 1454.0
14 TraesCS2B01G341200 chr2A 84.487 1199 101 41 281 1426 580381840 580383006 0.000000e+00 1105.0
15 TraesCS2B01G341200 chr2A 89.466 731 72 4 4434 5161 549954975 549954247 0.000000e+00 918.0
16 TraesCS2B01G341200 chr2A 87.925 795 49 20 2192 2976 580383663 580384420 0.000000e+00 893.0
17 TraesCS2B01G341200 chr2A 79.421 656 100 19 3515 4163 580721497 580722124 1.030000e-116 431.0
18 TraesCS2B01G341200 chr2A 79.098 665 101 22 3515 4171 580760487 580761121 1.720000e-114 424.0
19 TraesCS2B01G341200 chr2A 87.147 389 26 8 1775 2163 580383299 580383663 2.220000e-113 420.0
20 TraesCS2B01G341200 chr2A 92.275 233 12 5 3038 3267 580384538 580384767 4.980000e-85 326.0
21 TraesCS2B01G341200 chr1D 91.120 732 60 4 4434 5161 16205541 16204811 0.000000e+00 987.0
22 TraesCS2B01G341200 chr5D 89.727 769 65 9 4405 5161 69326225 69325459 0.000000e+00 970.0
23 TraesCS2B01G341200 chr5D 96.226 106 4 0 3270 3375 483565185 483565080 1.910000e-39 174.0
24 TraesCS2B01G341200 chr5D 94.444 108 6 0 3267 3374 76233517 76233624 3.200000e-37 167.0
25 TraesCS2B01G341200 chr3B 90.424 731 64 4 4434 5161 3135295 3136022 0.000000e+00 957.0
26 TraesCS2B01G341200 chr3B 94.595 74 4 0 1 74 671382636 671382563 1.170000e-21 115.0
27 TraesCS2B01G341200 chr3B 94.595 74 4 0 1 74 726494961 726494888 1.170000e-21 115.0
28 TraesCS2B01G341200 chr6D 89.863 730 65 8 4436 5161 143085394 143084670 0.000000e+00 929.0
29 TraesCS2B01G341200 chr6D 89.466 731 74 2 4434 5161 412057989 412057259 0.000000e+00 920.0
30 TraesCS2B01G341200 chr6D 89.388 735 70 6 4431 5161 411994608 411995338 0.000000e+00 918.0
31 TraesCS2B01G341200 chr7B 81.413 651 91 22 3514 4161 72437076 72437699 5.960000e-139 505.0
32 TraesCS2B01G341200 chr7B 79.701 670 105 22 3514 4178 72513159 72513802 6.090000e-124 455.0
33 TraesCS2B01G341200 chr7B 93.966 116 7 0 3267 3382 597243588 597243473 5.310000e-40 176.0
34 TraesCS2B01G341200 chr7B 95.946 74 3 0 1 74 502251638 502251711 2.520000e-23 121.0
35 TraesCS2B01G341200 chr7B 94.737 76 4 0 1 76 672644728 672644803 9.080000e-23 119.0
36 TraesCS2B01G341200 chr7B 94.595 74 4 0 1 74 154159622 154159695 1.170000e-21 115.0
37 TraesCS2B01G341200 chr7D 79.787 658 104 21 3514 4169 112947714 112948344 7.880000e-123 451.0
38 TraesCS2B01G341200 chr7D 79.570 651 102 19 3514 4161 113153624 113154246 2.210000e-118 436.0
39 TraesCS2B01G341200 chr7D 78.901 564 86 20 3610 4169 112951794 112952328 8.220000e-93 351.0
40 TraesCS2B01G341200 chr7D 82.400 250 36 6 3906 4153 113016504 113016747 1.460000e-50 211.0
41 TraesCS2B01G341200 chr7D 79.661 118 21 3 2522 2637 112947248 112947364 1.190000e-11 82.4
42 TraesCS2B01G341200 chr7D 82.759 87 12 2 2556 2639 113132345 113132431 1.990000e-09 75.0
43 TraesCS2B01G341200 chr7A 82.857 315 40 10 3853 4165 118208284 118208586 2.370000e-68 270.0
44 TraesCS2B01G341200 chr3D 75.552 589 107 30 3516 4094 517488853 517489414 6.630000e-64 255.0
45 TraesCS2B01G341200 chr3D 92.857 112 8 0 3267 3378 563635147 563635258 4.130000e-36 163.0
46 TraesCS2B01G341200 chr3A 96.226 106 4 0 3270 3375 186535545 186535440 1.910000e-39 174.0
47 TraesCS2B01G341200 chr3A 92.920 113 8 0 3267 3379 21172376 21172488 1.150000e-36 165.0
48 TraesCS2B01G341200 chr6A 93.750 112 7 0 3267 3378 22290267 22290378 8.890000e-38 169.0
49 TraesCS2B01G341200 chr6A 83.824 68 11 0 7 74 151474421 151474354 1.200000e-06 65.8
50 TraesCS2B01G341200 chr6A 82.432 74 13 0 1 74 604101181 604101108 1.200000e-06 65.8
51 TraesCS2B01G341200 chr6A 94.595 37 2 0 38 74 370468061 370468025 2.010000e-04 58.4
52 TraesCS2B01G341200 chr1B 92.857 112 8 0 3266 3377 82064273 82064384 4.130000e-36 163.0
53 TraesCS2B01G341200 chr1B 93.976 83 5 0 1 83 566054689 566054607 5.430000e-25 126.0
54 TraesCS2B01G341200 chr1B 89.189 74 8 0 1 74 614315390 614315463 5.500000e-15 93.5
55 TraesCS2B01G341200 chr1B 87.838 74 5 1 1 74 510833184 510833253 3.310000e-12 84.2
56 TraesCS2B01G341200 chr6B 95.946 74 3 0 1 74 19860703 19860776 2.520000e-23 121.0
57 TraesCS2B01G341200 chr4B 94.667 75 4 0 1 75 652921440 652921366 3.270000e-22 117.0
58 TraesCS2B01G341200 chr4B 93.243 74 5 0 1 74 652933976 652933903 5.460000e-20 110.0
59 TraesCS2B01G341200 chr4B 94.872 39 2 0 36 74 370416748 370416786 1.550000e-05 62.1
60 TraesCS2B01G341200 chr4B 82.353 68 12 0 5 72 543327458 543327525 5.580000e-05 60.2
61 TraesCS2B01G341200 chr5B 94.595 74 4 0 1 74 582993256 582993329 1.170000e-21 115.0
62 TraesCS2B01G341200 chr5B 90.541 74 7 0 1 74 313317674 313317601 1.180000e-16 99.0
63 TraesCS2B01G341200 chr5B 90.541 74 7 0 1 74 642772552 642772625 1.180000e-16 99.0
64 TraesCS2B01G341200 chr5B 89.189 74 8 0 1 74 123532029 123532102 5.500000e-15 93.5
65 TraesCS2B01G341200 chr5B 89.189 74 8 0 1 74 639799932 639800005 5.500000e-15 93.5
66 TraesCS2B01G341200 chrUn 83.784 74 12 0 1 74 298657766 298657839 2.580000e-08 71.3
67 TraesCS2B01G341200 chrUn 83.784 74 12 0 1 74 311035830 311035757 2.580000e-08 71.3
68 TraesCS2B01G341200 chrUn 83.784 74 12 0 1 74 311052523 311052596 2.580000e-08 71.3
69 TraesCS2B01G341200 chrUn 83.784 74 12 0 1 74 344524430 344524357 2.580000e-08 71.3
70 TraesCS2B01G341200 chr1A 94.737 38 2 0 38 75 365377223 365377186 5.580000e-05 60.2
71 TraesCS2B01G341200 chr1A 94.595 37 2 0 38 74 365389771 365389735 2.010000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G341200 chr2B 486840138 486845298 5160 False 9531.0 9531 100.000000 1 5161 1 chr2B.!!$F3 5160
1 TraesCS2B01G341200 chr2B 477530623 477531352 729 False 944.0 944 90.054000 4431 5161 1 chr2B.!!$F2 730
2 TraesCS2B01G341200 chr2B 23337055 23337800 745 False 918.0 918 88.933000 4415 5161 1 chr2B.!!$F1 746
3 TraesCS2B01G341200 chr2B 486952507 486953142 635 False 407.0 407 78.647000 3515 4171 1 chr2B.!!$F4 656
4 TraesCS2B01G341200 chr2D 413347711 413354314 6603 False 1014.4 1570 92.063600 281 4290 5 chr2D.!!$F3 4009
5 TraesCS2B01G341200 chr2D 413691315 413691942 627 False 420.0 420 79.052000 3515 4163 1 chr2D.!!$F2 648
6 TraesCS2B01G341200 chr2A 549954247 549954975 728 True 918.0 918 89.466000 4434 5161 1 chr2A.!!$R1 727
7 TraesCS2B01G341200 chr2A 580381840 580385792 3952 False 839.6 1454 89.585600 281 4385 5 chr2A.!!$F3 4104
8 TraesCS2B01G341200 chr2A 580721497 580722124 627 False 431.0 431 79.421000 3515 4163 1 chr2A.!!$F1 648
9 TraesCS2B01G341200 chr2A 580760487 580761121 634 False 424.0 424 79.098000 3515 4171 1 chr2A.!!$F2 656
10 TraesCS2B01G341200 chr1D 16204811 16205541 730 True 987.0 987 91.120000 4434 5161 1 chr1D.!!$R1 727
11 TraesCS2B01G341200 chr5D 69325459 69326225 766 True 970.0 970 89.727000 4405 5161 1 chr5D.!!$R1 756
12 TraesCS2B01G341200 chr3B 3135295 3136022 727 False 957.0 957 90.424000 4434 5161 1 chr3B.!!$F1 727
13 TraesCS2B01G341200 chr6D 143084670 143085394 724 True 929.0 929 89.863000 4436 5161 1 chr6D.!!$R1 725
14 TraesCS2B01G341200 chr6D 412057259 412057989 730 True 920.0 920 89.466000 4434 5161 1 chr6D.!!$R2 727
15 TraesCS2B01G341200 chr6D 411994608 411995338 730 False 918.0 918 89.388000 4431 5161 1 chr6D.!!$F1 730
16 TraesCS2B01G341200 chr7B 72437076 72437699 623 False 505.0 505 81.413000 3514 4161 1 chr7B.!!$F1 647
17 TraesCS2B01G341200 chr7B 72513159 72513802 643 False 455.0 455 79.701000 3514 4178 1 chr7B.!!$F2 664
18 TraesCS2B01G341200 chr7D 113153624 113154246 622 False 436.0 436 79.570000 3514 4161 1 chr7D.!!$F3 647
19 TraesCS2B01G341200 chr7D 112947248 112952328 5080 False 294.8 451 79.449667 2522 4169 3 chr7D.!!$F4 1647
20 TraesCS2B01G341200 chr3D 517488853 517489414 561 False 255.0 255 75.552000 3516 4094 1 chr3D.!!$F1 578

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
119 120 0.039256 GCAAGCTCACGCCATTTTCA 60.039 50.0 0.00 0.0 36.60 2.69 F
372 373 0.170561 ACGTACTACTTGAGGCGCTG 59.829 55.0 7.64 0.0 32.91 5.18 F
478 481 0.183731 AGAAATCCATTCTCCCGGGC 59.816 55.0 18.49 0.0 45.42 6.13 F
1748 1858 0.257328 TTCCACACAAGCTGGTCCAA 59.743 50.0 0.00 0.0 0.00 3.53 F
2352 5036 0.389948 GACGAGTAGCCAACAGGGTG 60.390 60.0 0.00 0.0 39.65 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1009 1077 0.108207 ATTGCTGCTGGCTAGGCTAG 59.892 55.0 17.33 17.33 42.39 3.42 R
1767 1877 0.299597 GCGCGGATTGTTTAGTACGG 59.700 55.0 8.83 0.00 0.00 4.02 R
2036 4720 0.315251 GTGAAGCTTGCCCCAAAGAC 59.685 55.0 2.10 0.00 0.00 3.01 R
3462 6291 0.247419 CGCGCATGCACTTTGTAGAG 60.247 55.0 19.57 0.00 42.97 2.43 R
4189 11039 0.605319 TGAAGGTGCCTAAACAGCGG 60.605 55.0 0.00 0.00 42.81 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 6.380079 AGGATGTCCTTGATTATGGTATCC 57.620 41.667 14.51 14.51 46.09 2.59
32 33 6.094302 AGGATGTCCTTGATTATGGTATCCT 58.906 40.000 17.03 17.03 46.09 3.24
33 34 7.256399 AGGATGTCCTTGATTATGGTATCCTA 58.744 38.462 19.26 0.00 46.09 2.94
34 35 7.739444 AGGATGTCCTTGATTATGGTATCCTAA 59.261 37.037 19.26 0.00 46.09 2.69
35 36 8.383175 GGATGTCCTTGATTATGGTATCCTAAA 58.617 37.037 14.81 0.00 35.54 1.85
36 37 9.965902 GATGTCCTTGATTATGGTATCCTAAAT 57.034 33.333 0.00 0.00 0.00 1.40
39 40 9.892130 GTCCTTGATTATGGTATCCTAAATAGG 57.108 37.037 0.00 0.00 45.02 2.57
40 41 9.629649 TCCTTGATTATGGTATCCTAAATAGGT 57.370 33.333 6.39 0.00 44.02 3.08
41 42 9.892130 CCTTGATTATGGTATCCTAAATAGGTC 57.108 37.037 6.39 0.00 44.02 3.85
42 43 9.892130 CTTGATTATGGTATCCTAAATAGGTCC 57.108 37.037 6.39 8.24 44.02 4.46
43 44 8.982471 TGATTATGGTATCCTAAATAGGTCCA 57.018 34.615 16.43 16.43 44.02 4.02
44 45 9.574577 TGATTATGGTATCCTAAATAGGTCCAT 57.425 33.333 22.88 22.88 44.09 3.41
45 46 9.838339 GATTATGGTATCCTAAATAGGTCCATG 57.162 37.037 25.13 0.00 43.06 3.66
46 47 8.982471 TTATGGTATCCTAAATAGGTCCATGA 57.018 34.615 25.13 20.02 43.06 3.07
47 48 6.681729 TGGTATCCTAAATAGGTCCATGAC 57.318 41.667 6.39 0.00 44.02 3.06
55 56 4.831613 GGTCCATGACCCTACCCT 57.168 61.111 1.68 0.00 46.19 4.34
56 57 3.961588 GGTCCATGACCCTACCCTA 57.038 57.895 1.68 0.00 46.19 3.53
57 58 1.718280 GGTCCATGACCCTACCCTAG 58.282 60.000 1.68 0.00 46.19 3.02
58 59 1.219724 GGTCCATGACCCTACCCTAGA 59.780 57.143 1.68 0.00 46.19 2.43
59 60 2.158143 GGTCCATGACCCTACCCTAGAT 60.158 54.545 1.68 0.00 46.19 1.98
60 61 3.077088 GGTCCATGACCCTACCCTAGATA 59.923 52.174 1.68 0.00 46.19 1.98
61 62 4.087907 GTCCATGACCCTACCCTAGATAC 58.912 52.174 0.00 0.00 0.00 2.24
62 63 3.730594 TCCATGACCCTACCCTAGATACA 59.269 47.826 0.00 0.00 0.00 2.29
63 64 4.360140 TCCATGACCCTACCCTAGATACAT 59.640 45.833 0.00 0.00 0.00 2.29
64 65 5.558339 TCCATGACCCTACCCTAGATACATA 59.442 44.000 0.00 0.00 0.00 2.29
65 66 6.047479 TCCATGACCCTACCCTAGATACATAA 59.953 42.308 0.00 0.00 0.00 1.90
66 67 6.154706 CCATGACCCTACCCTAGATACATAAC 59.845 46.154 0.00 0.00 0.00 1.89
67 68 6.283948 TGACCCTACCCTAGATACATAACA 57.716 41.667 0.00 0.00 0.00 2.41
68 69 6.871035 TGACCCTACCCTAGATACATAACAT 58.129 40.000 0.00 0.00 0.00 2.71
69 70 6.952358 TGACCCTACCCTAGATACATAACATC 59.048 42.308 0.00 0.00 0.00 3.06
70 71 6.871035 ACCCTACCCTAGATACATAACATCA 58.129 40.000 0.00 0.00 0.00 3.07
71 72 7.488205 ACCCTACCCTAGATACATAACATCAT 58.512 38.462 0.00 0.00 0.00 2.45
72 73 7.620094 ACCCTACCCTAGATACATAACATCATC 59.380 40.741 0.00 0.00 0.00 2.92
73 74 7.619698 CCCTACCCTAGATACATAACATCATCA 59.380 40.741 0.00 0.00 0.00 3.07
74 75 8.470805 CCTACCCTAGATACATAACATCATCAC 58.529 40.741 0.00 0.00 0.00 3.06
75 76 7.246171 ACCCTAGATACATAACATCATCACC 57.754 40.000 0.00 0.00 0.00 4.02
76 77 7.019388 ACCCTAGATACATAACATCATCACCT 58.981 38.462 0.00 0.00 0.00 4.00
77 78 7.179338 ACCCTAGATACATAACATCATCACCTC 59.821 40.741 0.00 0.00 0.00 3.85
78 79 7.364232 CCCTAGATACATAACATCATCACCTCC 60.364 44.444 0.00 0.00 0.00 4.30
79 80 6.365970 AGATACATAACATCATCACCTCCC 57.634 41.667 0.00 0.00 0.00 4.30
80 81 3.475566 ACATAACATCATCACCTCCCG 57.524 47.619 0.00 0.00 0.00 5.14
81 82 2.146342 CATAACATCATCACCTCCCGC 58.854 52.381 0.00 0.00 0.00 6.13
82 83 0.468226 TAACATCATCACCTCCCGCC 59.532 55.000 0.00 0.00 0.00 6.13
83 84 2.280389 CATCATCACCTCCCGCCG 60.280 66.667 0.00 0.00 0.00 6.46
84 85 2.443952 ATCATCACCTCCCGCCGA 60.444 61.111 0.00 0.00 0.00 5.54
85 86 1.838846 ATCATCACCTCCCGCCGAT 60.839 57.895 0.00 0.00 0.00 4.18
86 87 1.410850 ATCATCACCTCCCGCCGATT 61.411 55.000 0.00 0.00 0.00 3.34
87 88 1.153168 CATCACCTCCCGCCGATTT 60.153 57.895 0.00 0.00 0.00 2.17
88 89 0.748005 CATCACCTCCCGCCGATTTT 60.748 55.000 0.00 0.00 0.00 1.82
89 90 0.463833 ATCACCTCCCGCCGATTTTC 60.464 55.000 0.00 0.00 0.00 2.29
90 91 2.125269 ACCTCCCGCCGATTTTCG 60.125 61.111 0.00 0.00 40.07 3.46
100 101 1.351707 CGATTTTCGGGGATGCACG 59.648 57.895 0.80 0.80 36.00 5.34
101 102 1.064134 GATTTTCGGGGATGCACGC 59.936 57.895 3.00 0.00 0.00 5.34
102 103 1.653094 GATTTTCGGGGATGCACGCA 61.653 55.000 3.00 0.00 0.00 5.24
103 104 1.247419 ATTTTCGGGGATGCACGCAA 61.247 50.000 3.00 0.00 0.00 4.85
107 108 3.512516 GGGGATGCACGCAAGCTC 61.513 66.667 0.00 0.00 45.62 4.09
108 109 2.747460 GGGATGCACGCAAGCTCA 60.747 61.111 0.00 0.00 45.62 4.26
109 110 2.482374 GGATGCACGCAAGCTCAC 59.518 61.111 0.00 0.00 45.62 3.51
110 111 2.097160 GATGCACGCAAGCTCACG 59.903 61.111 6.78 6.78 45.62 4.35
111 112 3.989566 GATGCACGCAAGCTCACGC 62.990 63.158 8.14 0.70 45.62 5.34
114 115 3.425713 CACGCAAGCTCACGCCAT 61.426 61.111 8.14 0.00 45.62 4.40
115 116 2.669569 ACGCAAGCTCACGCCATT 60.670 55.556 8.14 0.00 45.62 3.16
116 117 2.260869 ACGCAAGCTCACGCCATTT 61.261 52.632 8.14 0.00 45.62 2.32
117 118 1.081242 CGCAAGCTCACGCCATTTT 60.081 52.632 0.00 0.00 36.60 1.82
118 119 1.067199 CGCAAGCTCACGCCATTTTC 61.067 55.000 0.00 0.00 36.60 2.29
119 120 0.039256 GCAAGCTCACGCCATTTTCA 60.039 50.000 0.00 0.00 36.60 2.69
120 121 1.403249 GCAAGCTCACGCCATTTTCAT 60.403 47.619 0.00 0.00 36.60 2.57
121 122 2.256174 CAAGCTCACGCCATTTTCATG 58.744 47.619 0.00 0.00 36.60 3.07
122 123 0.171903 AGCTCACGCCATTTTCATGC 59.828 50.000 0.00 0.00 36.60 4.06
123 124 0.171903 GCTCACGCCATTTTCATGCT 59.828 50.000 0.00 0.00 0.00 3.79
124 125 1.796617 GCTCACGCCATTTTCATGCTC 60.797 52.381 0.00 0.00 0.00 4.26
125 126 0.447406 TCACGCCATTTTCATGCTCG 59.553 50.000 0.00 0.00 33.58 5.03
126 127 1.135699 CACGCCATTTTCATGCTCGC 61.136 55.000 0.00 0.00 31.73 5.03
127 128 1.137194 CGCCATTTTCATGCTCGCA 59.863 52.632 0.00 0.00 0.00 5.10
128 129 0.248743 CGCCATTTTCATGCTCGCAT 60.249 50.000 0.00 0.00 37.08 4.73
159 160 3.411517 CGTTCCCCTCCCCTGCAT 61.412 66.667 0.00 0.00 0.00 3.96
160 161 2.070039 CGTTCCCCTCCCCTGCATA 61.070 63.158 0.00 0.00 0.00 3.14
161 162 1.532238 GTTCCCCTCCCCTGCATAC 59.468 63.158 0.00 0.00 0.00 2.39
162 163 2.070039 TTCCCCTCCCCTGCATACG 61.070 63.158 0.00 0.00 0.00 3.06
163 164 2.768344 CCCCTCCCCTGCATACGT 60.768 66.667 0.00 0.00 0.00 3.57
164 165 2.505982 CCCTCCCCTGCATACGTG 59.494 66.667 0.00 0.00 0.00 4.49
165 166 2.063979 CCCTCCCCTGCATACGTGA 61.064 63.158 0.00 0.00 0.00 4.35
166 167 1.410850 CCCTCCCCTGCATACGTGAT 61.411 60.000 0.00 0.00 0.00 3.06
167 168 0.469917 CCTCCCCTGCATACGTGATT 59.530 55.000 0.00 0.00 0.00 2.57
168 169 1.134098 CCTCCCCTGCATACGTGATTT 60.134 52.381 0.00 0.00 0.00 2.17
169 170 2.104111 CCTCCCCTGCATACGTGATTTA 59.896 50.000 0.00 0.00 0.00 1.40
170 171 3.393800 CTCCCCTGCATACGTGATTTAG 58.606 50.000 0.00 0.00 0.00 1.85
171 172 2.104111 TCCCCTGCATACGTGATTTAGG 59.896 50.000 0.00 0.00 0.00 2.69
172 173 2.494059 CCCTGCATACGTGATTTAGGG 58.506 52.381 0.00 5.32 37.63 3.53
173 174 2.494059 CCTGCATACGTGATTTAGGGG 58.506 52.381 0.00 0.00 0.00 4.79
174 175 2.104111 CCTGCATACGTGATTTAGGGGA 59.896 50.000 0.00 0.00 0.00 4.81
175 176 3.433031 CCTGCATACGTGATTTAGGGGAA 60.433 47.826 0.00 0.00 0.00 3.97
176 177 4.389374 CTGCATACGTGATTTAGGGGAAT 58.611 43.478 0.00 0.00 0.00 3.01
177 178 5.512404 CCTGCATACGTGATTTAGGGGAATA 60.512 44.000 0.00 0.00 0.00 1.75
178 179 5.302360 TGCATACGTGATTTAGGGGAATAC 58.698 41.667 0.00 0.00 0.00 1.89
179 180 5.163290 TGCATACGTGATTTAGGGGAATACA 60.163 40.000 0.00 0.00 0.00 2.29
180 181 5.761234 GCATACGTGATTTAGGGGAATACAA 59.239 40.000 0.00 0.00 0.00 2.41
181 182 6.073222 GCATACGTGATTTAGGGGAATACAAG 60.073 42.308 0.00 0.00 0.00 3.16
182 183 4.196971 ACGTGATTTAGGGGAATACAAGC 58.803 43.478 0.00 0.00 0.00 4.01
183 184 4.080526 ACGTGATTTAGGGGAATACAAGCT 60.081 41.667 0.00 0.00 0.00 3.74
184 185 5.129815 ACGTGATTTAGGGGAATACAAGCTA 59.870 40.000 0.00 0.00 0.00 3.32
185 186 6.183361 ACGTGATTTAGGGGAATACAAGCTAT 60.183 38.462 0.00 0.00 0.00 2.97
186 187 6.369065 CGTGATTTAGGGGAATACAAGCTATC 59.631 42.308 0.00 0.00 0.00 2.08
187 188 7.224297 GTGATTTAGGGGAATACAAGCTATCA 58.776 38.462 0.00 0.00 0.00 2.15
188 189 7.719633 GTGATTTAGGGGAATACAAGCTATCAA 59.280 37.037 0.00 0.00 0.00 2.57
189 190 8.278639 TGATTTAGGGGAATACAAGCTATCAAA 58.721 33.333 0.00 0.00 0.00 2.69
190 191 9.301897 GATTTAGGGGAATACAAGCTATCAAAT 57.698 33.333 0.00 0.00 0.00 2.32
191 192 8.463930 TTTAGGGGAATACAAGCTATCAAATG 57.536 34.615 0.00 0.00 0.00 2.32
192 193 4.829492 AGGGGAATACAAGCTATCAAATGC 59.171 41.667 0.00 0.00 0.00 3.56
193 194 4.320494 GGGGAATACAAGCTATCAAATGCG 60.320 45.833 0.00 0.00 0.00 4.73
194 195 4.275936 GGGAATACAAGCTATCAAATGCGT 59.724 41.667 0.00 0.00 0.00 5.24
195 196 5.207768 GGAATACAAGCTATCAAATGCGTG 58.792 41.667 0.00 0.00 42.62 5.34
196 197 2.549633 ACAAGCTATCAAATGCGTGC 57.450 45.000 0.00 0.00 41.13 5.34
197 198 2.086869 ACAAGCTATCAAATGCGTGCT 58.913 42.857 0.00 0.00 41.13 4.40
198 199 2.489329 ACAAGCTATCAAATGCGTGCTT 59.511 40.909 0.00 0.00 41.13 3.91
199 200 2.838386 AGCTATCAAATGCGTGCTTG 57.162 45.000 0.00 0.00 0.00 4.01
200 201 2.358957 AGCTATCAAATGCGTGCTTGA 58.641 42.857 0.00 0.00 36.08 3.02
201 202 2.353889 AGCTATCAAATGCGTGCTTGAG 59.646 45.455 0.04 0.00 35.14 3.02
202 203 2.540361 GCTATCAAATGCGTGCTTGAGG 60.540 50.000 0.04 0.00 35.14 3.86
203 204 1.825090 ATCAAATGCGTGCTTGAGGA 58.175 45.000 0.04 0.00 35.14 3.71
204 205 1.825090 TCAAATGCGTGCTTGAGGAT 58.175 45.000 0.00 0.00 0.00 3.24
205 206 2.161855 TCAAATGCGTGCTTGAGGATT 58.838 42.857 0.00 0.00 0.00 3.01
206 207 2.557924 TCAAATGCGTGCTTGAGGATTT 59.442 40.909 0.00 0.00 38.60 2.17
207 208 3.005684 TCAAATGCGTGCTTGAGGATTTT 59.994 39.130 0.00 0.00 36.50 1.82
208 209 2.927553 ATGCGTGCTTGAGGATTTTC 57.072 45.000 0.00 0.00 0.00 2.29
209 210 0.516877 TGCGTGCTTGAGGATTTTCG 59.483 50.000 0.00 0.00 0.00 3.46
210 211 0.179189 GCGTGCTTGAGGATTTTCGG 60.179 55.000 0.00 0.00 0.00 4.30
211 212 0.447801 CGTGCTTGAGGATTTTCGGG 59.552 55.000 0.00 0.00 0.00 5.14
212 213 0.811281 GTGCTTGAGGATTTTCGGGG 59.189 55.000 0.00 0.00 0.00 5.73
213 214 0.695924 TGCTTGAGGATTTTCGGGGA 59.304 50.000 0.00 0.00 0.00 4.81
214 215 1.284785 TGCTTGAGGATTTTCGGGGAT 59.715 47.619 0.00 0.00 0.00 3.85
215 216 1.678101 GCTTGAGGATTTTCGGGGATG 59.322 52.381 0.00 0.00 0.00 3.51
216 217 1.678101 CTTGAGGATTTTCGGGGATGC 59.322 52.381 0.00 0.00 0.00 3.91
217 218 0.623194 TGAGGATTTTCGGGGATGCA 59.377 50.000 0.00 0.00 0.00 3.96
218 219 1.025041 GAGGATTTTCGGGGATGCAC 58.975 55.000 0.00 0.00 0.00 4.57
219 220 0.748005 AGGATTTTCGGGGATGCACG 60.748 55.000 0.80 0.80 0.00 5.34
220 221 1.064134 GATTTTCGGGGATGCACGC 59.936 57.895 3.00 0.00 0.00 5.34
221 222 1.653094 GATTTTCGGGGATGCACGCA 61.653 55.000 3.00 0.00 0.00 5.24
222 223 1.247419 ATTTTCGGGGATGCACGCAA 61.247 50.000 3.00 0.00 0.00 4.85
226 227 3.512516 GGGGATGCACGCAAGCTC 61.513 66.667 0.00 0.00 45.62 4.09
227 228 2.747460 GGGATGCACGCAAGCTCA 60.747 61.111 0.00 0.00 45.62 4.26
228 229 2.482374 GGATGCACGCAAGCTCAC 59.518 61.111 0.00 0.00 45.62 3.51
229 230 2.097160 GATGCACGCAAGCTCACG 59.903 61.111 6.78 6.78 45.62 4.35
230 231 3.989566 GATGCACGCAAGCTCACGC 62.990 63.158 8.14 0.70 45.62 5.34
233 234 3.425713 CACGCAAGCTCACGCCAT 61.426 61.111 8.14 0.00 45.62 4.40
234 235 2.669569 ACGCAAGCTCACGCCATT 60.670 55.556 8.14 0.00 45.62 3.16
235 236 2.260869 ACGCAAGCTCACGCCATTT 61.261 52.632 8.14 0.00 45.62 2.32
236 237 1.081242 CGCAAGCTCACGCCATTTT 60.081 52.632 0.00 0.00 36.60 1.82
237 238 1.067199 CGCAAGCTCACGCCATTTTC 61.067 55.000 0.00 0.00 36.60 2.29
238 239 0.039256 GCAAGCTCACGCCATTTTCA 60.039 50.000 0.00 0.00 36.60 2.69
239 240 1.403249 GCAAGCTCACGCCATTTTCAT 60.403 47.619 0.00 0.00 36.60 2.57
240 241 2.256174 CAAGCTCACGCCATTTTCATG 58.744 47.619 0.00 0.00 36.60 3.07
241 242 0.171903 AGCTCACGCCATTTTCATGC 59.828 50.000 0.00 0.00 36.60 4.06
242 243 0.171903 GCTCACGCCATTTTCATGCT 59.828 50.000 0.00 0.00 0.00 3.79
243 244 1.796617 GCTCACGCCATTTTCATGCTC 60.797 52.381 0.00 0.00 0.00 4.26
244 245 0.447406 TCACGCCATTTTCATGCTCG 59.553 50.000 0.00 0.00 33.58 5.03
245 246 1.135699 CACGCCATTTTCATGCTCGC 61.136 55.000 0.00 0.00 31.73 5.03
246 247 1.137194 CGCCATTTTCATGCTCGCA 59.863 52.632 0.00 0.00 0.00 5.10
247 248 0.248743 CGCCATTTTCATGCTCGCAT 60.249 50.000 0.00 0.00 37.08 4.73
278 279 3.411517 CGTTCCCCTCCCCTGCAT 61.412 66.667 0.00 0.00 0.00 3.96
279 280 2.070039 CGTTCCCCTCCCCTGCATA 61.070 63.158 0.00 0.00 0.00 3.14
299 300 5.761234 GCATACGTGATTTAGGGGAATACAA 59.239 40.000 0.00 0.00 0.00 2.41
304 305 6.183361 ACGTGATTTAGGGGAATACAAGCTAT 60.183 38.462 0.00 0.00 0.00 2.97
309 310 9.301897 GATTTAGGGGAATACAAGCTATCAAAT 57.698 33.333 0.00 0.00 0.00 2.32
319 320 2.358957 AGCTATCAAATGCGTGCTTGA 58.641 42.857 0.00 0.00 36.08 3.02
325 326 1.267806 CAAATGCGTGCTTGAGGACTT 59.732 47.619 1.24 0.00 33.97 3.01
327 328 0.250467 ATGCGTGCTTGAGGACTTGT 60.250 50.000 1.24 0.00 33.97 3.16
371 372 0.886563 AACGTACTACTTGAGGCGCT 59.113 50.000 7.64 0.00 32.91 5.92
372 373 0.170561 ACGTACTACTTGAGGCGCTG 59.829 55.000 7.64 0.00 32.91 5.18
373 374 0.450583 CGTACTACTTGAGGCGCTGA 59.549 55.000 7.64 0.00 0.00 4.26
374 375 1.065701 CGTACTACTTGAGGCGCTGAT 59.934 52.381 7.64 0.00 0.00 2.90
375 376 2.479730 CGTACTACTTGAGGCGCTGATT 60.480 50.000 7.64 0.00 0.00 2.57
376 377 2.770164 ACTACTTGAGGCGCTGATTT 57.230 45.000 7.64 0.00 0.00 2.17
378 379 3.412386 ACTACTTGAGGCGCTGATTTTT 58.588 40.909 7.64 0.00 0.00 1.94
406 409 1.817099 GATCCCACTTGAGGCGCTG 60.817 63.158 7.64 0.00 0.00 5.18
409 412 1.377725 CCCACTTGAGGCGCTGATT 60.378 57.895 7.64 0.00 0.00 2.57
421 424 1.937391 GCTGATTGGAGGCGAATCG 59.063 57.895 0.00 0.00 32.55 3.34
423 426 1.212616 CTGATTGGAGGCGAATCGTC 58.787 55.000 0.00 0.00 32.55 4.20
478 481 0.183731 AGAAATCCATTCTCCCGGGC 59.816 55.000 18.49 0.00 45.42 6.13
479 482 0.823769 GAAATCCATTCTCCCGGGCC 60.824 60.000 18.49 0.00 35.04 5.80
480 483 2.298335 AAATCCATTCTCCCGGGCCC 62.298 60.000 18.49 13.57 0.00 5.80
560 570 2.823593 CCCATTCGCCACGATGCA 60.824 61.111 0.00 0.00 35.23 3.96
670 686 2.289547 GTGTACACGTTCAAGTGCCAAT 59.710 45.455 10.84 0.00 45.45 3.16
675 691 1.002900 ACGTTCAAGTGCCAATTCGTG 60.003 47.619 0.00 0.00 0.00 4.35
676 692 1.262950 CGTTCAAGTGCCAATTCGTGA 59.737 47.619 0.00 0.00 0.00 4.35
690 706 5.406780 CCAATTCGTGAGTAATCATAGAGGC 59.593 44.000 0.00 0.00 0.00 4.70
774 811 3.827898 CGAGTCTCGCCAGGGGAC 61.828 72.222 9.74 0.00 31.14 4.46
775 812 2.680352 GAGTCTCGCCAGGGGACA 60.680 66.667 0.95 0.00 32.98 4.02
776 813 2.203788 AGTCTCGCCAGGGGACAA 60.204 61.111 0.95 0.00 32.98 3.18
777 814 2.232298 GAGTCTCGCCAGGGGACAAG 62.232 65.000 0.95 0.00 32.98 3.16
778 815 3.003173 TCTCGCCAGGGGACAAGG 61.003 66.667 0.95 0.00 0.00 3.61
779 816 4.101448 CTCGCCAGGGGACAAGGG 62.101 72.222 0.95 0.00 0.00 3.95
780 817 4.649705 TCGCCAGGGGACAAGGGA 62.650 66.667 0.95 0.00 0.00 4.20
781 818 4.101448 CGCCAGGGGACAAGGGAG 62.101 72.222 0.00 0.00 0.00 4.30
782 819 3.732849 GCCAGGGGACAAGGGAGG 61.733 72.222 0.00 0.00 0.00 4.30
783 820 3.017581 CCAGGGGACAAGGGAGGG 61.018 72.222 0.00 0.00 0.00 4.30
784 821 2.124996 CAGGGGACAAGGGAGGGA 59.875 66.667 0.00 0.00 0.00 4.20
785 822 1.997874 CAGGGGACAAGGGAGGGAG 60.998 68.421 0.00 0.00 0.00 4.30
786 823 2.692741 GGGGACAAGGGAGGGAGG 60.693 72.222 0.00 0.00 0.00 4.30
875 919 1.545651 GGGGGAAACAGACACTTCAGG 60.546 57.143 0.00 0.00 0.00 3.86
902 946 2.114670 CACGCCACCATCACATCCC 61.115 63.158 0.00 0.00 0.00 3.85
925 969 1.217882 GCTGCGCTTTATATGTCCGT 58.782 50.000 9.73 0.00 0.00 4.69
927 971 2.743938 CTGCGCTTTATATGTCCGTCT 58.256 47.619 9.73 0.00 0.00 4.18
928 972 2.469826 TGCGCTTTATATGTCCGTCTG 58.530 47.619 9.73 0.00 0.00 3.51
929 973 2.100087 TGCGCTTTATATGTCCGTCTGA 59.900 45.455 9.73 0.00 0.00 3.27
1003 1071 2.306219 TCCTCTCTTCGTCTTCCTCTCA 59.694 50.000 0.00 0.00 0.00 3.27
1005 1073 3.078097 CTCTCTTCGTCTTCCTCTCACA 58.922 50.000 0.00 0.00 0.00 3.58
1006 1074 3.487372 TCTCTTCGTCTTCCTCTCACAA 58.513 45.455 0.00 0.00 0.00 3.33
1007 1075 3.504134 TCTCTTCGTCTTCCTCTCACAAG 59.496 47.826 0.00 0.00 0.00 3.16
1008 1076 2.558795 TCTTCGTCTTCCTCTCACAAGG 59.441 50.000 0.00 0.00 37.81 3.61
1009 1077 0.603569 TCGTCTTCCTCTCACAAGGC 59.396 55.000 0.00 0.00 36.29 4.35
1010 1078 0.605589 CGTCTTCCTCTCACAAGGCT 59.394 55.000 0.00 0.00 36.29 4.58
1011 1079 1.819288 CGTCTTCCTCTCACAAGGCTA 59.181 52.381 0.00 0.00 36.29 3.93
1012 1080 2.159310 CGTCTTCCTCTCACAAGGCTAG 60.159 54.545 0.00 0.00 36.29 3.42
1013 1081 1.827969 TCTTCCTCTCACAAGGCTAGC 59.172 52.381 6.04 6.04 36.29 3.42
1014 1082 0.905357 TTCCTCTCACAAGGCTAGCC 59.095 55.000 27.19 27.19 36.29 3.93
1148 1216 1.064946 GCGTCTACGAGCTCAGCAT 59.935 57.895 15.40 0.00 43.02 3.79
1222 1290 3.618019 CGTCTTTCCGGATTCCAAAGGTA 60.618 47.826 4.15 0.00 0.00 3.08
1234 1302 4.503714 TCCAAAGGTATGTCTTGGGATC 57.496 45.455 2.81 0.00 40.84 3.36
1249 1317 1.943340 GGGATCTCGCTTTGGTTCATC 59.057 52.381 0.00 0.00 0.00 2.92
1262 1330 6.624642 GCTTTGGTTCATCTTCTTGGATCTTC 60.625 42.308 0.00 0.00 0.00 2.87
1317 1389 3.436359 CCTGAGCTTTTCTTTCTCTCTGC 59.564 47.826 0.00 0.00 0.00 4.26
1380 1452 7.254898 CCATCGCTGAATATGTTGTAAGTTCAT 60.255 37.037 0.00 0.00 0.00 2.57
1391 1463 7.667043 TGTTGTAAGTTCATACACTTGATCC 57.333 36.000 0.00 0.00 37.57 3.36
1422 1498 6.884280 AAACCCACTCTTCTTTAGTGATTG 57.116 37.500 4.84 0.00 45.89 2.67
1458 1535 3.641436 TCTGTTTTCTGGAGAGCACTGTA 59.359 43.478 0.00 0.00 0.00 2.74
1460 1537 4.569943 TGTTTTCTGGAGAGCACTGTATC 58.430 43.478 0.00 0.00 0.00 2.24
1516 1593 4.991056 GCTTTCGCATCCTAGATTGATGTA 59.009 41.667 8.63 0.00 41.32 2.29
1544 1621 3.198863 AGAACAGCGTAACGTACAGAG 57.801 47.619 0.00 0.00 0.00 3.35
1545 1622 1.647702 GAACAGCGTAACGTACAGAGC 59.352 52.381 0.00 0.00 0.00 4.09
1548 1625 1.583856 CAGCGTAACGTACAGAGCATG 59.416 52.381 0.00 0.00 0.00 4.06
1552 1629 0.804544 TAACGTACAGAGCATGCGGC 60.805 55.000 13.01 8.84 45.30 6.53
1569 1674 3.312421 TGCGGCAATCTCAGCTTAATTAC 59.688 43.478 0.00 0.00 0.00 1.89
1571 1676 4.023707 GCGGCAATCTCAGCTTAATTACAT 60.024 41.667 0.00 0.00 0.00 2.29
1574 1679 7.573843 GCGGCAATCTCAGCTTAATTACATATT 60.574 37.037 0.00 0.00 0.00 1.28
1575 1680 8.935844 CGGCAATCTCAGCTTAATTACATATTA 58.064 33.333 0.00 0.00 0.00 0.98
1607 1714 2.095466 TCATTTCGAAACGGCAATGGAC 60.095 45.455 13.81 0.00 32.69 4.02
1646 1753 3.956199 ACATCCCATAAATTGCTGTCAGG 59.044 43.478 1.14 0.00 0.00 3.86
1653 1760 5.278907 CCATAAATTGCTGTCAGGTGTCAAA 60.279 40.000 1.14 0.00 0.00 2.69
1657 1764 3.144657 TGCTGTCAGGTGTCAAATCAT 57.855 42.857 1.14 0.00 0.00 2.45
1685 1792 6.849811 CGATTTCACATATCAAGCTCATCAAC 59.150 38.462 0.00 0.00 0.00 3.18
1691 1798 7.226128 TCACATATCAAGCTCATCAACTCATTC 59.774 37.037 0.00 0.00 0.00 2.67
1693 1800 5.814764 ATCAAGCTCATCAACTCATTCAC 57.185 39.130 0.00 0.00 0.00 3.18
1696 1803 5.049198 TCAAGCTCATCAACTCATTCACAAC 60.049 40.000 0.00 0.00 0.00 3.32
1700 1807 2.920724 TCAACTCATTCACAACCCGA 57.079 45.000 0.00 0.00 0.00 5.14
1715 1822 3.929948 CGAATCGCCGGCTTCAGC 61.930 66.667 26.68 8.96 41.14 4.26
1740 1850 7.566709 CATGAGTTAAAATTTTCCACACAAGC 58.433 34.615 6.72 0.00 0.00 4.01
1748 1858 0.257328 TTCCACACAAGCTGGTCCAA 59.743 50.000 0.00 0.00 0.00 3.53
1751 1861 1.392589 CACACAAGCTGGTCCAACTT 58.607 50.000 1.40 1.40 0.00 2.66
1753 1863 1.750778 ACACAAGCTGGTCCAACTTTG 59.249 47.619 4.70 9.39 0.00 2.77
1760 1870 2.887152 GCTGGTCCAACTTTGAAGACAT 59.113 45.455 0.00 0.00 0.00 3.06
1761 1871 3.304928 GCTGGTCCAACTTTGAAGACATG 60.305 47.826 0.00 0.00 0.00 3.21
1762 1872 3.221771 TGGTCCAACTTTGAAGACATGG 58.778 45.455 0.00 3.76 32.82 3.66
1764 1874 4.141367 TGGTCCAACTTTGAAGACATGGTA 60.141 41.667 0.00 0.00 33.11 3.25
1766 1876 5.063880 GTCCAACTTTGAAGACATGGTACT 58.936 41.667 0.00 0.00 33.11 2.73
1767 1877 5.179555 GTCCAACTTTGAAGACATGGTACTC 59.820 44.000 0.00 0.00 33.11 2.59
1769 1879 3.926616 ACTTTGAAGACATGGTACTCCG 58.073 45.455 0.00 0.00 36.30 4.63
1771 1881 4.525487 ACTTTGAAGACATGGTACTCCGTA 59.475 41.667 0.00 0.00 36.30 4.02
1772 1882 4.445452 TTGAAGACATGGTACTCCGTAC 57.555 45.455 0.00 0.00 38.19 3.67
1773 1883 3.693807 TGAAGACATGGTACTCCGTACT 58.306 45.455 0.00 0.00 38.85 2.73
1782 1932 5.329035 TGGTACTCCGTACTAAACAATCC 57.671 43.478 4.40 0.00 38.85 3.01
1785 1935 1.850441 CTCCGTACTAAACAATCCGCG 59.150 52.381 0.00 0.00 0.00 6.46
1789 1939 1.997606 GTACTAAACAATCCGCGCACT 59.002 47.619 8.75 0.00 0.00 4.40
1897 2052 2.035961 TGGACGCCATTCTATGAGCTAC 59.964 50.000 0.00 0.00 0.00 3.58
1898 2053 2.320367 GACGCCATTCTATGAGCTACG 58.680 52.381 0.00 0.00 0.00 3.51
1901 2056 1.702886 CCATTCTATGAGCTACGCCG 58.297 55.000 0.00 0.00 0.00 6.46
1928 2083 3.242608 CCATGTTACCCGTGAAAATAGCG 60.243 47.826 0.00 0.00 31.20 4.26
1950 2105 1.282875 GACCACGCAAAGGACAAGC 59.717 57.895 0.00 0.00 0.00 4.01
2046 4730 2.238521 TCAATCAAGTGTCTTTGGGGC 58.761 47.619 0.00 0.00 0.00 5.80
2104 4788 1.597854 TCACACGAAGCCAGCCAAG 60.598 57.895 0.00 0.00 0.00 3.61
2105 4789 2.980233 ACACGAAGCCAGCCAAGC 60.980 61.111 0.00 0.00 0.00 4.01
2163 4847 3.830755 AGGGAAATATCTGCATGCAATCC 59.169 43.478 22.88 19.34 0.00 3.01
2226 4910 5.812642 AGTTCAGAGTGATTAATTGTAGCCG 59.187 40.000 0.00 0.00 0.00 5.52
2229 4913 6.216569 TCAGAGTGATTAATTGTAGCCGATC 58.783 40.000 0.00 0.00 0.00 3.69
2266 4950 8.442374 ACTCAAAGGGTAAATCTTAACACCTTA 58.558 33.333 0.00 0.00 35.93 2.69
2269 4953 8.727910 CAAAGGGTAAATCTTAACACCTTACTC 58.272 37.037 0.00 0.00 35.93 2.59
2270 4954 7.563724 AGGGTAAATCTTAACACCTTACTCA 57.436 36.000 0.00 0.00 0.00 3.41
2272 4956 8.101419 AGGGTAAATCTTAACACCTTACTCAAG 58.899 37.037 0.00 0.00 0.00 3.02
2290 4974 4.703897 TCAAGTGGTTTTCTGACGAATCT 58.296 39.130 0.00 0.00 0.00 2.40
2352 5036 0.389948 GACGAGTAGCCAACAGGGTG 60.390 60.000 0.00 0.00 39.65 4.61
2455 5151 6.932356 ATGCTCCACAGTTTAGATATGTTG 57.068 37.500 0.00 0.00 0.00 3.33
2484 5184 6.842163 GTGAAACAAACTCATGGTAGGTATG 58.158 40.000 0.00 0.00 36.32 2.39
2491 5191 8.764558 ACAAACTCATGGTAGGTATGTATACAA 58.235 33.333 10.14 0.00 34.98 2.41
2492 5192 9.261180 CAAACTCATGGTAGGTATGTATACAAG 57.739 37.037 10.14 0.59 34.98 3.16
2604 5304 0.670546 GTGACTCCCCACACATCACG 60.671 60.000 0.00 0.00 37.04 4.35
2639 5339 0.809385 TTCGACGGAGAGCAAGGTAG 59.191 55.000 0.00 0.00 0.00 3.18
2642 5342 2.105128 CGGAGAGCAAGGTAGCGG 59.895 66.667 0.00 0.00 40.15 5.52
2660 5360 9.322773 AGGTAGCGGTTATTTAGTCTAAATTTC 57.677 33.333 20.28 13.92 39.06 2.17
2839 5550 8.735315 CCATGATCTAATGTAGTAGGAGTAGTG 58.265 40.741 0.00 0.00 0.00 2.74
2873 5584 9.589111 GTAACCAAAACAAACCTAGAATTTCAA 57.411 29.630 0.00 0.00 0.00 2.69
2969 5725 2.019984 CAGGATGCAAGCTAGGTTTCC 58.980 52.381 13.69 13.69 0.00 3.13
2982 5738 8.884726 CAAGCTAGGTTTCCTAAGAATAGAAAC 58.115 37.037 3.96 6.35 35.49 2.78
3027 5800 4.454504 TCGACTTGGGTCTAGCAAATTTTC 59.545 41.667 0.00 0.00 40.10 2.29
3049 5865 9.780413 TTTTCAATTTTTGCATACCTGAAAAAC 57.220 25.926 15.84 0.00 39.20 2.43
3234 6052 1.570979 CCCCCTCCCTTTTTGCTATCT 59.429 52.381 0.00 0.00 0.00 1.98
3253 6072 7.093509 TGCTATCTAACACAACAGTCCAAGATA 60.094 37.037 0.00 0.00 0.00 1.98
3255 6074 7.907214 ATCTAACACAACAGTCCAAGATAAC 57.093 36.000 0.00 0.00 0.00 1.89
3256 6075 6.228258 TCTAACACAACAGTCCAAGATAACC 58.772 40.000 0.00 0.00 0.00 2.85
3258 6077 4.985538 ACACAACAGTCCAAGATAACCAT 58.014 39.130 0.00 0.00 0.00 3.55
3260 6079 5.221925 ACACAACAGTCCAAGATAACCATCT 60.222 40.000 0.00 0.00 43.67 2.90
3272 6091 6.980051 AGATAACCATCTTGACGGTTTTAC 57.020 37.500 6.43 0.29 38.41 2.01
3273 6092 6.708285 AGATAACCATCTTGACGGTTTTACT 58.292 36.000 6.43 2.32 38.41 2.24
3274 6093 6.594159 AGATAACCATCTTGACGGTTTTACTG 59.406 38.462 6.43 0.00 38.41 2.74
3275 6094 4.081322 ACCATCTTGACGGTTTTACTGT 57.919 40.909 0.00 0.00 41.12 3.55
3283 6102 4.812862 GACGGTTTTACTGTCGTATGAC 57.187 45.455 8.21 8.21 43.67 3.06
3284 6103 4.479619 GACGGTTTTACTGTCGTATGACT 58.520 43.478 15.91 0.00 43.67 3.41
3285 6104 4.874970 ACGGTTTTACTGTCGTATGACTT 58.125 39.130 15.91 5.92 45.70 3.01
3286 6105 5.291971 ACGGTTTTACTGTCGTATGACTTT 58.708 37.500 15.91 5.59 45.70 2.66
3287 6106 5.176223 ACGGTTTTACTGTCGTATGACTTTG 59.824 40.000 15.91 8.71 45.70 2.77
3288 6107 5.176223 CGGTTTTACTGTCGTATGACTTTGT 59.824 40.000 15.91 13.31 45.70 2.83
3289 6108 6.363088 CGGTTTTACTGTCGTATGACTTTGTA 59.637 38.462 15.91 12.47 45.70 2.41
3290 6109 7.096106 CGGTTTTACTGTCGTATGACTTTGTAA 60.096 37.037 15.91 16.56 45.70 2.41
3291 6110 8.219105 GGTTTTACTGTCGTATGACTTTGTAAG 58.781 37.037 15.91 6.49 45.70 2.34
3292 6111 7.878477 TTTACTGTCGTATGACTTTGTAAGG 57.122 36.000 15.91 0.26 45.70 2.69
3293 6112 5.464030 ACTGTCGTATGACTTTGTAAGGT 57.536 39.130 15.91 0.77 45.70 3.50
3294 6113 5.850614 ACTGTCGTATGACTTTGTAAGGTT 58.149 37.500 15.91 0.00 45.70 3.50
3295 6114 6.285990 ACTGTCGTATGACTTTGTAAGGTTT 58.714 36.000 15.91 0.00 45.70 3.27
3296 6115 6.764560 ACTGTCGTATGACTTTGTAAGGTTTT 59.235 34.615 15.91 0.00 45.70 2.43
3297 6116 6.950545 TGTCGTATGACTTTGTAAGGTTTTG 58.049 36.000 15.91 0.00 45.70 2.44
3298 6117 6.539464 TGTCGTATGACTTTGTAAGGTTTTGT 59.461 34.615 15.91 0.00 45.70 2.83
3299 6118 6.849305 GTCGTATGACTTTGTAAGGTTTTGTG 59.151 38.462 7.88 0.00 42.08 3.33
3300 6119 6.762187 TCGTATGACTTTGTAAGGTTTTGTGA 59.238 34.615 0.00 0.00 0.00 3.58
3301 6120 7.042321 TCGTATGACTTTGTAAGGTTTTGTGAG 60.042 37.037 0.00 0.00 0.00 3.51
3302 6121 7.042321 CGTATGACTTTGTAAGGTTTTGTGAGA 60.042 37.037 0.00 0.00 0.00 3.27
3303 6122 7.639113 ATGACTTTGTAAGGTTTTGTGAGAA 57.361 32.000 0.00 0.00 0.00 2.87
3304 6123 7.639113 TGACTTTGTAAGGTTTTGTGAGAAT 57.361 32.000 0.00 0.00 0.00 2.40
3305 6124 8.740123 TGACTTTGTAAGGTTTTGTGAGAATA 57.260 30.769 0.00 0.00 0.00 1.75
3306 6125 9.179909 TGACTTTGTAAGGTTTTGTGAGAATAA 57.820 29.630 0.00 0.00 0.00 1.40
3322 6141 9.661563 TGTGAGAATAATTAATAAAGTGGTCGT 57.338 29.630 0.00 0.00 0.00 4.34
3331 6150 7.618502 TTAATAAAGTGGTCGTATGCATTGT 57.381 32.000 3.54 0.00 0.00 2.71
3332 6151 6.509418 AATAAAGTGGTCGTATGCATTGTT 57.491 33.333 3.54 0.00 0.00 2.83
3333 6152 4.419522 AAAGTGGTCGTATGCATTGTTC 57.580 40.909 3.54 0.00 0.00 3.18
3334 6153 3.052455 AGTGGTCGTATGCATTGTTCA 57.948 42.857 3.54 0.00 0.00 3.18
3335 6154 3.002791 AGTGGTCGTATGCATTGTTCAG 58.997 45.455 3.54 0.00 0.00 3.02
3336 6155 3.000041 GTGGTCGTATGCATTGTTCAGA 59.000 45.455 3.54 0.00 0.00 3.27
3337 6156 3.623060 GTGGTCGTATGCATTGTTCAGAT 59.377 43.478 3.54 0.00 0.00 2.90
3338 6157 3.622612 TGGTCGTATGCATTGTTCAGATG 59.377 43.478 3.54 0.00 0.00 2.90
3344 6163 2.846039 GCATTGTTCAGATGCAGAGG 57.154 50.000 4.35 0.00 46.96 3.69
3345 6164 1.202268 GCATTGTTCAGATGCAGAGGC 60.202 52.381 4.35 0.00 46.96 4.70
3346 6165 1.404391 CATTGTTCAGATGCAGAGGCC 59.596 52.381 0.00 0.00 40.13 5.19
3347 6166 0.674581 TTGTTCAGATGCAGAGGCCG 60.675 55.000 0.00 0.00 40.13 6.13
3348 6167 1.817099 GTTCAGATGCAGAGGCCGG 60.817 63.158 0.00 0.00 40.13 6.13
3349 6168 3.035173 TTCAGATGCAGAGGCCGGG 62.035 63.158 2.18 0.00 40.13 5.73
3350 6169 4.559063 CAGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
3367 6186 2.265526 GGGGTCCTCCTCCTTTTCTA 57.734 55.000 0.00 0.00 35.33 2.10
3422 6241 2.189342 GTGCACGCTGAGAATCTAGTC 58.811 52.381 0.00 0.00 34.92 2.59
3423 6242 2.095461 TGCACGCTGAGAATCTAGTCT 58.905 47.619 0.00 0.00 34.92 3.24
3426 6245 3.314080 GCACGCTGAGAATCTAGTCTAGT 59.686 47.826 6.77 0.00 34.92 2.57
3427 6246 4.512198 GCACGCTGAGAATCTAGTCTAGTA 59.488 45.833 6.77 0.00 34.92 1.82
3428 6247 5.007823 GCACGCTGAGAATCTAGTCTAGTAA 59.992 44.000 6.77 0.00 34.92 2.24
3429 6248 6.458478 GCACGCTGAGAATCTAGTCTAGTAAA 60.458 42.308 6.77 0.00 34.92 2.01
3430 6249 7.129622 CACGCTGAGAATCTAGTCTAGTAAAG 58.870 42.308 6.77 0.21 34.92 1.85
3431 6250 7.011576 CACGCTGAGAATCTAGTCTAGTAAAGA 59.988 40.741 6.77 0.00 34.92 2.52
3494 6338 3.173853 GCGCGGTGCAATTGAGTA 58.826 55.556 10.34 0.00 45.45 2.59
3496 6340 1.906994 GCGCGGTGCAATTGAGTACA 61.907 55.000 10.34 0.00 45.45 2.90
3497 6341 0.095245 CGCGGTGCAATTGAGTACAG 59.905 55.000 10.34 6.66 0.00 2.74
3500 6362 2.031157 GCGGTGCAATTGAGTACAGTTT 60.031 45.455 10.34 0.00 0.00 2.66
3502 6364 3.974401 CGGTGCAATTGAGTACAGTTTTG 59.026 43.478 10.34 0.00 0.00 2.44
3506 6368 5.909610 GTGCAATTGAGTACAGTTTTGTCTC 59.090 40.000 10.34 0.00 38.76 3.36
3781 6646 2.435693 GCACGCCCTATGACCTCCT 61.436 63.158 0.00 0.00 0.00 3.69
4203 11053 2.561373 GCACCGCTGTTTAGGCAC 59.439 61.111 0.00 0.00 0.00 5.01
4234 11084 0.895530 TGACCGGTCTCCTGATGTTC 59.104 55.000 33.39 5.32 0.00 3.18
4291 11142 4.891168 TCAGCAATAATACTCTCGGGTACA 59.109 41.667 0.00 0.00 0.00 2.90
4294 11145 4.989168 GCAATAATACTCTCGGGTACAAGG 59.011 45.833 0.00 0.00 0.00 3.61
4315 11166 5.291971 AGGCTATTTTTGCACTGAAAACTG 58.708 37.500 0.00 0.00 0.00 3.16
4316 11167 5.068987 AGGCTATTTTTGCACTGAAAACTGA 59.931 36.000 0.00 0.00 0.00 3.41
4321 11172 9.252962 CTATTTTTGCACTGAAAACTGAGAAAT 57.747 29.630 0.00 0.00 0.00 2.17
4355 11206 2.802414 GTGTACGGGTGCGTCGAC 60.802 66.667 5.18 5.18 0.00 4.20
4385 11236 1.153706 CGTCCTCAACGCCGGTTAT 60.154 57.895 1.90 0.00 45.76 1.89
4386 11237 0.101040 CGTCCTCAACGCCGGTTATA 59.899 55.000 1.90 0.00 45.76 0.98
4387 11238 1.849097 GTCCTCAACGCCGGTTATAG 58.151 55.000 1.90 0.00 33.72 1.31
4388 11239 0.748450 TCCTCAACGCCGGTTATAGG 59.252 55.000 1.90 4.44 38.74 2.57
4396 11247 2.523440 CCGGTTATAGGCCAGTCCA 58.477 57.895 5.01 0.00 37.29 4.02
4397 11248 0.106149 CCGGTTATAGGCCAGTCCAC 59.894 60.000 5.01 0.00 37.29 4.02
4398 11249 0.249322 CGGTTATAGGCCAGTCCACG 60.249 60.000 5.01 0.00 37.29 4.94
4399 11250 0.828677 GGTTATAGGCCAGTCCACGT 59.171 55.000 5.01 0.00 37.29 4.49
4400 11251 1.472728 GGTTATAGGCCAGTCCACGTG 60.473 57.143 9.08 9.08 37.29 4.49
4401 11252 0.177141 TTATAGGCCAGTCCACGTGC 59.823 55.000 10.91 0.00 37.29 5.34
4402 11253 0.973496 TATAGGCCAGTCCACGTGCA 60.973 55.000 10.91 0.00 37.29 4.57
4403 11254 2.244117 ATAGGCCAGTCCACGTGCAG 62.244 60.000 10.91 0.00 37.29 4.41
4407 11258 0.882927 GCCAGTCCACGTGCAGTAAA 60.883 55.000 10.91 0.00 0.00 2.01
4426 11277 2.747460 GCATCTCCAACAGCCGCA 60.747 61.111 0.00 0.00 0.00 5.69
4427 11278 3.044059 GCATCTCCAACAGCCGCAC 62.044 63.158 0.00 0.00 0.00 5.34
4515 11375 2.159379 GCGGCTGCTGTAAAATTTAGCT 60.159 45.455 11.21 0.00 38.25 3.32
4587 11448 4.394610 TCGCACAAACAACATATGCACTAT 59.605 37.500 1.58 0.00 36.02 2.12
4749 11613 0.321564 CTCTTTGTCGGCCACCATGA 60.322 55.000 2.24 0.00 0.00 3.07
4816 11680 2.869801 GGCACGTCGAATGGAATGATAA 59.130 45.455 0.00 0.00 0.00 1.75
4927 11791 2.623416 ACCACGCTCATTCTCGATGATA 59.377 45.455 0.00 0.00 43.59 2.15
4980 11844 7.936496 TGATGTACCAAAGCATCTTTTGATA 57.064 32.000 0.00 0.00 41.33 2.15
4981 11845 8.523915 TGATGTACCAAAGCATCTTTTGATAT 57.476 30.769 0.00 0.00 41.33 1.63
5049 11914 4.453480 TCCCAAAAACTCTCTCCACATT 57.547 40.909 0.00 0.00 0.00 2.71
5100 11965 9.196552 GTGGAAATCAAGATTTTTCTTACCTTG 57.803 33.333 9.22 0.00 40.77 3.61
5133 11998 0.681175 GGCTCCACAAATGTTTGCCT 59.319 50.000 5.44 0.00 41.79 4.75
5152 12017 4.349048 TGCCTCTTTGTATAGATGCCATCT 59.651 41.667 12.62 12.62 43.33 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 6.094302 AGGATACCATAATCAAGGACATCCT 58.906 40.000 11.13 11.13 44.50 3.24
9 10 6.380079 AGGATACCATAATCAAGGACATCC 57.620 41.667 0.00 0.00 38.84 3.51
14 15 9.629649 ACCTATTTAGGATACCATAATCAAGGA 57.370 33.333 10.61 0.00 46.63 3.36
15 16 9.892130 GACCTATTTAGGATACCATAATCAAGG 57.108 37.037 10.61 0.00 46.63 3.61
17 18 9.400208 TGGACCTATTTAGGATACCATAATCAA 57.600 33.333 10.61 0.00 46.63 2.57
18 19 8.982471 TGGACCTATTTAGGATACCATAATCA 57.018 34.615 10.61 0.00 46.63 2.57
19 20 9.838339 CATGGACCTATTTAGGATACCATAATC 57.162 37.037 21.48 5.88 46.63 1.75
20 21 9.574577 TCATGGACCTATTTAGGATACCATAAT 57.425 33.333 21.48 9.26 46.63 1.28
21 22 8.822805 GTCATGGACCTATTTAGGATACCATAA 58.177 37.037 21.48 13.03 46.63 1.90
22 23 8.375493 GTCATGGACCTATTTAGGATACCATA 57.625 38.462 21.48 13.76 46.63 2.74
23 24 7.259088 GTCATGGACCTATTTAGGATACCAT 57.741 40.000 18.86 18.86 46.63 3.55
24 25 6.681729 GTCATGGACCTATTTAGGATACCA 57.318 41.667 10.61 14.66 46.63 3.25
39 40 2.769602 TCTAGGGTAGGGTCATGGAC 57.230 55.000 0.00 0.00 0.00 4.02
40 41 3.730594 TGTATCTAGGGTAGGGTCATGGA 59.269 47.826 0.00 0.00 0.00 3.41
41 42 4.127918 TGTATCTAGGGTAGGGTCATGG 57.872 50.000 0.00 0.00 0.00 3.66
42 43 6.724441 TGTTATGTATCTAGGGTAGGGTCATG 59.276 42.308 0.00 0.00 0.00 3.07
43 44 6.871035 TGTTATGTATCTAGGGTAGGGTCAT 58.129 40.000 0.00 0.00 0.00 3.06
44 45 6.283948 TGTTATGTATCTAGGGTAGGGTCA 57.716 41.667 0.00 0.00 0.00 4.02
45 46 6.952358 TGATGTTATGTATCTAGGGTAGGGTC 59.048 42.308 0.00 0.00 0.00 4.46
46 47 6.871035 TGATGTTATGTATCTAGGGTAGGGT 58.129 40.000 0.00 0.00 0.00 4.34
47 48 7.619698 TGATGATGTTATGTATCTAGGGTAGGG 59.380 40.741 0.00 0.00 0.00 3.53
48 49 8.470805 GTGATGATGTTATGTATCTAGGGTAGG 58.529 40.741 0.00 0.00 0.00 3.18
49 50 8.470805 GGTGATGATGTTATGTATCTAGGGTAG 58.529 40.741 0.00 0.00 0.00 3.18
50 51 8.177456 AGGTGATGATGTTATGTATCTAGGGTA 58.823 37.037 0.00 0.00 0.00 3.69
51 52 7.019388 AGGTGATGATGTTATGTATCTAGGGT 58.981 38.462 0.00 0.00 0.00 4.34
52 53 7.364232 GGAGGTGATGATGTTATGTATCTAGGG 60.364 44.444 0.00 0.00 0.00 3.53
53 54 7.364232 GGGAGGTGATGATGTTATGTATCTAGG 60.364 44.444 0.00 0.00 0.00 3.02
54 55 7.551585 GGGAGGTGATGATGTTATGTATCTAG 58.448 42.308 0.00 0.00 0.00 2.43
55 56 6.152831 CGGGAGGTGATGATGTTATGTATCTA 59.847 42.308 0.00 0.00 0.00 1.98
56 57 5.047021 CGGGAGGTGATGATGTTATGTATCT 60.047 44.000 0.00 0.00 0.00 1.98
57 58 5.171476 CGGGAGGTGATGATGTTATGTATC 58.829 45.833 0.00 0.00 0.00 2.24
58 59 4.563580 GCGGGAGGTGATGATGTTATGTAT 60.564 45.833 0.00 0.00 0.00 2.29
59 60 3.244078 GCGGGAGGTGATGATGTTATGTA 60.244 47.826 0.00 0.00 0.00 2.29
60 61 2.485479 GCGGGAGGTGATGATGTTATGT 60.485 50.000 0.00 0.00 0.00 2.29
61 62 2.146342 GCGGGAGGTGATGATGTTATG 58.854 52.381 0.00 0.00 0.00 1.90
62 63 1.072331 GGCGGGAGGTGATGATGTTAT 59.928 52.381 0.00 0.00 0.00 1.89
63 64 0.468226 GGCGGGAGGTGATGATGTTA 59.532 55.000 0.00 0.00 0.00 2.41
64 65 1.224592 GGCGGGAGGTGATGATGTT 59.775 57.895 0.00 0.00 0.00 2.71
65 66 2.911143 GGCGGGAGGTGATGATGT 59.089 61.111 0.00 0.00 0.00 3.06
66 67 2.104572 ATCGGCGGGAGGTGATGATG 62.105 60.000 7.21 0.00 0.00 3.07
67 68 1.410850 AATCGGCGGGAGGTGATGAT 61.411 55.000 7.21 0.00 0.00 2.45
68 69 1.622607 AAATCGGCGGGAGGTGATGA 61.623 55.000 7.21 0.00 0.00 2.92
69 70 0.748005 AAAATCGGCGGGAGGTGATG 60.748 55.000 7.21 0.00 0.00 3.07
70 71 0.463833 GAAAATCGGCGGGAGGTGAT 60.464 55.000 7.21 0.00 0.00 3.06
71 72 1.078708 GAAAATCGGCGGGAGGTGA 60.079 57.895 7.21 0.00 0.00 4.02
72 73 2.461110 CGAAAATCGGCGGGAGGTG 61.461 63.158 7.21 0.00 36.00 4.00
73 74 2.125269 CGAAAATCGGCGGGAGGT 60.125 61.111 7.21 0.00 36.00 3.85
82 83 1.351707 CGTGCATCCCCGAAAATCG 59.648 57.895 0.00 0.00 40.07 3.34
83 84 1.064134 GCGTGCATCCCCGAAAATC 59.936 57.895 0.00 0.00 0.00 2.17
84 85 1.247419 TTGCGTGCATCCCCGAAAAT 61.247 50.000 0.00 0.00 0.00 1.82
85 86 1.861542 CTTGCGTGCATCCCCGAAAA 61.862 55.000 0.00 0.00 0.00 2.29
86 87 2.281831 TTGCGTGCATCCCCGAAA 60.282 55.556 0.00 0.00 0.00 3.46
87 88 2.745884 CTTGCGTGCATCCCCGAA 60.746 61.111 0.00 0.00 0.00 4.30
90 91 3.512516 GAGCTTGCGTGCATCCCC 61.513 66.667 0.00 0.00 34.99 4.81
91 92 2.747460 TGAGCTTGCGTGCATCCC 60.747 61.111 0.00 0.00 34.99 3.85
92 93 2.482374 GTGAGCTTGCGTGCATCC 59.518 61.111 0.00 0.00 34.99 3.51
93 94 2.097160 CGTGAGCTTGCGTGCATC 59.903 61.111 0.00 0.00 34.99 3.91
105 106 1.530441 CGAGCATGAAAATGGCGTGAG 60.530 52.381 0.00 0.00 0.00 3.51
106 107 0.447406 CGAGCATGAAAATGGCGTGA 59.553 50.000 0.00 0.00 0.00 4.35
107 108 1.135699 GCGAGCATGAAAATGGCGTG 61.136 55.000 0.00 0.00 0.00 5.34
108 109 1.137404 GCGAGCATGAAAATGGCGT 59.863 52.632 0.00 0.00 0.00 5.68
109 110 0.248743 ATGCGAGCATGAAAATGGCG 60.249 50.000 10.04 0.00 35.03 5.69
110 111 3.654178 ATGCGAGCATGAAAATGGC 57.346 47.368 10.04 0.00 35.03 4.40
142 143 2.070039 TATGCAGGGGAGGGGAACG 61.070 63.158 0.00 0.00 0.00 3.95
143 144 1.532238 GTATGCAGGGGAGGGGAAC 59.468 63.158 0.00 0.00 0.00 3.62
144 145 2.070039 CGTATGCAGGGGAGGGGAA 61.070 63.158 0.00 0.00 0.00 3.97
145 146 2.445845 CGTATGCAGGGGAGGGGA 60.446 66.667 0.00 0.00 0.00 4.81
146 147 2.768344 ACGTATGCAGGGGAGGGG 60.768 66.667 0.00 0.00 0.00 4.79
147 148 1.410850 ATCACGTATGCAGGGGAGGG 61.411 60.000 0.00 0.00 0.00 4.30
148 149 0.469917 AATCACGTATGCAGGGGAGG 59.530 55.000 0.00 0.00 0.00 4.30
149 150 2.332063 AAATCACGTATGCAGGGGAG 57.668 50.000 0.00 0.00 0.00 4.30
150 151 2.104111 CCTAAATCACGTATGCAGGGGA 59.896 50.000 0.00 0.00 0.00 4.81
151 152 2.494059 CCTAAATCACGTATGCAGGGG 58.506 52.381 0.00 0.00 0.00 4.79
152 153 2.494059 CCCTAAATCACGTATGCAGGG 58.506 52.381 6.94 6.94 35.61 4.45
153 154 2.104111 TCCCCTAAATCACGTATGCAGG 59.896 50.000 0.00 0.00 0.00 4.85
154 155 3.469008 TCCCCTAAATCACGTATGCAG 57.531 47.619 0.00 0.00 0.00 4.41
155 156 3.916359 TTCCCCTAAATCACGTATGCA 57.084 42.857 0.00 0.00 0.00 3.96
156 157 5.302360 TGTATTCCCCTAAATCACGTATGC 58.698 41.667 0.00 0.00 0.00 3.14
157 158 6.073222 GCTTGTATTCCCCTAAATCACGTATG 60.073 42.308 0.00 0.00 0.00 2.39
158 159 5.995897 GCTTGTATTCCCCTAAATCACGTAT 59.004 40.000 0.00 0.00 0.00 3.06
159 160 5.129815 AGCTTGTATTCCCCTAAATCACGTA 59.870 40.000 0.00 0.00 0.00 3.57
160 161 4.080526 AGCTTGTATTCCCCTAAATCACGT 60.081 41.667 0.00 0.00 0.00 4.49
161 162 4.451900 AGCTTGTATTCCCCTAAATCACG 58.548 43.478 0.00 0.00 0.00 4.35
162 163 7.224297 TGATAGCTTGTATTCCCCTAAATCAC 58.776 38.462 0.00 0.00 0.00 3.06
163 164 7.387265 TGATAGCTTGTATTCCCCTAAATCA 57.613 36.000 0.00 0.00 0.00 2.57
164 165 8.691661 TTTGATAGCTTGTATTCCCCTAAATC 57.308 34.615 0.00 0.00 0.00 2.17
165 166 9.082313 CATTTGATAGCTTGTATTCCCCTAAAT 57.918 33.333 0.00 0.00 0.00 1.40
166 167 7.014230 GCATTTGATAGCTTGTATTCCCCTAAA 59.986 37.037 0.00 0.00 0.00 1.85
167 168 6.490040 GCATTTGATAGCTTGTATTCCCCTAA 59.510 38.462 0.00 0.00 0.00 2.69
168 169 6.003950 GCATTTGATAGCTTGTATTCCCCTA 58.996 40.000 0.00 0.00 0.00 3.53
169 170 4.829492 GCATTTGATAGCTTGTATTCCCCT 59.171 41.667 0.00 0.00 0.00 4.79
170 171 4.320494 CGCATTTGATAGCTTGTATTCCCC 60.320 45.833 0.00 0.00 0.00 4.81
171 172 4.275936 ACGCATTTGATAGCTTGTATTCCC 59.724 41.667 0.00 0.00 0.00 3.97
172 173 5.207768 CACGCATTTGATAGCTTGTATTCC 58.792 41.667 0.00 0.00 0.00 3.01
173 174 4.672413 GCACGCATTTGATAGCTTGTATTC 59.328 41.667 0.00 0.00 33.15 1.75
174 175 4.336433 AGCACGCATTTGATAGCTTGTATT 59.664 37.500 0.00 0.00 33.15 1.89
175 176 3.879295 AGCACGCATTTGATAGCTTGTAT 59.121 39.130 0.00 0.00 33.15 2.29
176 177 3.270027 AGCACGCATTTGATAGCTTGTA 58.730 40.909 0.00 0.00 33.15 2.41
177 178 2.086869 AGCACGCATTTGATAGCTTGT 58.913 42.857 0.00 0.00 33.15 3.16
178 179 2.838386 AGCACGCATTTGATAGCTTG 57.162 45.000 0.00 0.00 33.66 4.01
179 180 2.749076 TCAAGCACGCATTTGATAGCTT 59.251 40.909 0.00 0.00 42.45 3.74
180 181 2.353889 CTCAAGCACGCATTTGATAGCT 59.646 45.455 0.00 0.00 33.25 3.32
181 182 2.540361 CCTCAAGCACGCATTTGATAGC 60.540 50.000 0.00 0.00 33.25 2.97
182 183 2.938451 TCCTCAAGCACGCATTTGATAG 59.062 45.455 0.00 0.00 33.25 2.08
183 184 2.984562 TCCTCAAGCACGCATTTGATA 58.015 42.857 0.00 0.00 33.25 2.15
184 185 1.825090 TCCTCAAGCACGCATTTGAT 58.175 45.000 0.00 0.00 33.25 2.57
185 186 1.825090 ATCCTCAAGCACGCATTTGA 58.175 45.000 0.00 0.00 32.75 2.69
186 187 2.642139 AATCCTCAAGCACGCATTTG 57.358 45.000 0.00 0.00 0.00 2.32
187 188 3.578688 GAAAATCCTCAAGCACGCATTT 58.421 40.909 0.00 0.00 0.00 2.32
188 189 2.414559 CGAAAATCCTCAAGCACGCATT 60.415 45.455 0.00 0.00 0.00 3.56
189 190 1.131126 CGAAAATCCTCAAGCACGCAT 59.869 47.619 0.00 0.00 0.00 4.73
190 191 0.516877 CGAAAATCCTCAAGCACGCA 59.483 50.000 0.00 0.00 0.00 5.24
191 192 0.179189 CCGAAAATCCTCAAGCACGC 60.179 55.000 0.00 0.00 0.00 5.34
192 193 0.447801 CCCGAAAATCCTCAAGCACG 59.552 55.000 0.00 0.00 0.00 5.34
193 194 0.811281 CCCCGAAAATCCTCAAGCAC 59.189 55.000 0.00 0.00 0.00 4.40
194 195 0.695924 TCCCCGAAAATCCTCAAGCA 59.304 50.000 0.00 0.00 0.00 3.91
195 196 1.678101 CATCCCCGAAAATCCTCAAGC 59.322 52.381 0.00 0.00 0.00 4.01
196 197 1.678101 GCATCCCCGAAAATCCTCAAG 59.322 52.381 0.00 0.00 0.00 3.02
197 198 1.005332 TGCATCCCCGAAAATCCTCAA 59.995 47.619 0.00 0.00 0.00 3.02
198 199 0.623194 TGCATCCCCGAAAATCCTCA 59.377 50.000 0.00 0.00 0.00 3.86
199 200 1.025041 GTGCATCCCCGAAAATCCTC 58.975 55.000 0.00 0.00 0.00 3.71
200 201 0.748005 CGTGCATCCCCGAAAATCCT 60.748 55.000 0.00 0.00 0.00 3.24
201 202 1.727467 CGTGCATCCCCGAAAATCC 59.273 57.895 0.00 0.00 0.00 3.01
202 203 1.064134 GCGTGCATCCCCGAAAATC 59.936 57.895 0.00 0.00 0.00 2.17
203 204 1.247419 TTGCGTGCATCCCCGAAAAT 61.247 50.000 0.00 0.00 0.00 1.82
204 205 1.861542 CTTGCGTGCATCCCCGAAAA 61.862 55.000 0.00 0.00 0.00 2.29
205 206 2.281831 TTGCGTGCATCCCCGAAA 60.282 55.556 0.00 0.00 0.00 3.46
206 207 2.745884 CTTGCGTGCATCCCCGAA 60.746 61.111 0.00 0.00 0.00 4.30
209 210 3.512516 GAGCTTGCGTGCATCCCC 61.513 66.667 0.00 0.00 34.99 4.81
210 211 2.747460 TGAGCTTGCGTGCATCCC 60.747 61.111 0.00 0.00 34.99 3.85
211 212 2.482374 GTGAGCTTGCGTGCATCC 59.518 61.111 0.00 0.00 34.99 3.51
212 213 2.097160 CGTGAGCTTGCGTGCATC 59.903 61.111 0.00 0.00 34.99 3.91
224 225 1.530441 CGAGCATGAAAATGGCGTGAG 60.530 52.381 0.00 0.00 0.00 3.51
225 226 0.447406 CGAGCATGAAAATGGCGTGA 59.553 50.000 0.00 0.00 0.00 4.35
226 227 1.135699 GCGAGCATGAAAATGGCGTG 61.136 55.000 0.00 0.00 0.00 5.34
227 228 1.137404 GCGAGCATGAAAATGGCGT 59.863 52.632 0.00 0.00 0.00 5.68
228 229 0.248743 ATGCGAGCATGAAAATGGCG 60.249 50.000 10.04 0.00 35.03 5.69
229 230 3.654178 ATGCGAGCATGAAAATGGC 57.346 47.368 10.04 0.00 35.03 4.40
261 262 2.070039 TATGCAGGGGAGGGGAACG 61.070 63.158 0.00 0.00 0.00 3.95
262 263 1.532238 GTATGCAGGGGAGGGGAAC 59.468 63.158 0.00 0.00 0.00 3.62
263 264 2.070039 CGTATGCAGGGGAGGGGAA 61.070 63.158 0.00 0.00 0.00 3.97
264 265 2.445845 CGTATGCAGGGGAGGGGA 60.446 66.667 0.00 0.00 0.00 4.81
265 266 2.768344 ACGTATGCAGGGGAGGGG 60.768 66.667 0.00 0.00 0.00 4.79
266 267 1.410850 ATCACGTATGCAGGGGAGGG 61.411 60.000 0.00 0.00 0.00 4.30
267 268 0.469917 AATCACGTATGCAGGGGAGG 59.530 55.000 0.00 0.00 0.00 4.30
268 269 2.332063 AAATCACGTATGCAGGGGAG 57.668 50.000 0.00 0.00 0.00 4.30
269 270 2.104111 CCTAAATCACGTATGCAGGGGA 59.896 50.000 0.00 0.00 0.00 4.81
270 271 2.494059 CCTAAATCACGTATGCAGGGG 58.506 52.381 0.00 0.00 0.00 4.79
271 272 2.494059 CCCTAAATCACGTATGCAGGG 58.506 52.381 6.94 6.94 35.61 4.45
272 273 2.104111 TCCCCTAAATCACGTATGCAGG 59.896 50.000 0.00 0.00 0.00 4.85
273 274 3.469008 TCCCCTAAATCACGTATGCAG 57.531 47.619 0.00 0.00 0.00 4.41
274 275 3.916359 TTCCCCTAAATCACGTATGCA 57.084 42.857 0.00 0.00 0.00 3.96
275 276 5.302360 TGTATTCCCCTAAATCACGTATGC 58.698 41.667 0.00 0.00 0.00 3.14
276 277 6.073222 GCTTGTATTCCCCTAAATCACGTATG 60.073 42.308 0.00 0.00 0.00 2.39
277 278 5.995897 GCTTGTATTCCCCTAAATCACGTAT 59.004 40.000 0.00 0.00 0.00 3.06
278 279 5.129815 AGCTTGTATTCCCCTAAATCACGTA 59.870 40.000 0.00 0.00 0.00 3.57
279 280 4.080526 AGCTTGTATTCCCCTAAATCACGT 60.081 41.667 0.00 0.00 0.00 4.49
299 300 2.353889 CTCAAGCACGCATTTGATAGCT 59.646 45.455 0.00 0.00 33.25 3.32
304 305 0.874390 GTCCTCAAGCACGCATTTGA 59.126 50.000 0.00 0.00 32.75 2.69
309 310 0.463654 AACAAGTCCTCAAGCACGCA 60.464 50.000 0.00 0.00 0.00 5.24
319 320 0.393077 ACGTAGCAGCAACAAGTCCT 59.607 50.000 0.00 0.00 0.00 3.85
325 326 2.242047 TTGGTAACGTAGCAGCAACA 57.758 45.000 0.00 0.00 37.49 3.33
327 328 3.064207 CTCTTTGGTAACGTAGCAGCAA 58.936 45.455 0.00 0.00 37.49 3.91
383 384 1.339055 CGCCTCAAGTGGGATCTCAAA 60.339 52.381 0.00 0.00 0.00 2.69
384 385 0.250234 CGCCTCAAGTGGGATCTCAA 59.750 55.000 0.00 0.00 0.00 3.02
385 386 1.900351 CGCCTCAAGTGGGATCTCA 59.100 57.895 0.00 0.00 0.00 3.27
386 387 1.522580 GCGCCTCAAGTGGGATCTC 60.523 63.158 0.00 0.00 0.00 2.75
390 391 1.841302 AATCAGCGCCTCAAGTGGGA 61.841 55.000 2.29 0.00 0.00 4.37
391 392 1.377725 AATCAGCGCCTCAAGTGGG 60.378 57.895 2.29 0.00 0.00 4.61
392 393 1.651240 CCAATCAGCGCCTCAAGTGG 61.651 60.000 2.29 2.01 0.00 4.00
393 394 0.674581 TCCAATCAGCGCCTCAAGTG 60.675 55.000 2.29 0.00 0.00 3.16
406 409 0.880718 GGGACGATTCGCCTCCAATC 60.881 60.000 15.22 1.05 0.00 2.67
421 424 2.182030 CAGCGTCTTCTCGGGGAC 59.818 66.667 0.00 0.00 0.00 4.46
423 426 4.069232 TGCAGCGTCTTCTCGGGG 62.069 66.667 0.00 0.00 0.00 5.73
483 486 2.960129 GTAATCAGCCCCGCGACG 60.960 66.667 8.23 0.00 0.00 5.12
484 487 2.588034 GGTAATCAGCCCCGCGAC 60.588 66.667 8.23 0.00 0.00 5.19
485 488 3.857038 GGGTAATCAGCCCCGCGA 61.857 66.667 8.23 0.00 40.26 5.87
490 493 4.259952 GGCAAGGGTAATCAGCCC 57.740 61.111 0.00 0.00 43.87 5.19
493 496 0.748005 CGTGGGGCAAGGGTAATCAG 60.748 60.000 0.00 0.00 0.00 2.90
494 497 1.301623 CGTGGGGCAAGGGTAATCA 59.698 57.895 0.00 0.00 0.00 2.57
495 498 1.453197 CCGTGGGGCAAGGGTAATC 60.453 63.158 0.00 0.00 29.60 1.75
635 651 0.452987 GTACACTGACCGGCATCGTA 59.547 55.000 0.00 2.67 33.95 3.43
670 686 3.004419 CCGCCTCTATGATTACTCACGAA 59.996 47.826 0.00 0.00 33.22 3.85
675 691 3.119637 GCTCTCCGCCTCTATGATTACTC 60.120 52.174 0.00 0.00 0.00 2.59
676 692 2.823154 GCTCTCCGCCTCTATGATTACT 59.177 50.000 0.00 0.00 0.00 2.24
774 811 4.785453 GTGCGCCTCCCTCCCTTG 62.785 72.222 4.18 0.00 0.00 3.61
859 903 4.394920 TGACAAACCTGAAGTGTCTGTTTC 59.605 41.667 4.81 0.00 41.80 2.78
875 919 1.452145 ATGGTGGCGTGGTGACAAAC 61.452 55.000 0.00 0.00 46.06 2.93
925 969 1.409064 GCGGATATGTGGTCAGTCAGA 59.591 52.381 0.00 0.00 0.00 3.27
927 971 0.464036 GGCGGATATGTGGTCAGTCA 59.536 55.000 0.00 0.00 0.00 3.41
928 972 0.249911 GGGCGGATATGTGGTCAGTC 60.250 60.000 0.00 0.00 0.00 3.51
929 973 0.980754 TGGGCGGATATGTGGTCAGT 60.981 55.000 0.00 0.00 0.00 3.41
1009 1077 0.108207 ATTGCTGCTGGCTAGGCTAG 59.892 55.000 17.33 17.33 42.39 3.42
1010 1078 0.179037 CATTGCTGCTGGCTAGGCTA 60.179 55.000 18.18 3.16 42.39 3.93
1011 1079 1.453379 CATTGCTGCTGGCTAGGCT 60.453 57.895 18.18 0.00 42.39 4.58
1012 1080 2.487532 CCATTGCTGCTGGCTAGGC 61.488 63.158 9.85 9.85 42.39 3.93
1013 1081 3.837578 CCATTGCTGCTGGCTAGG 58.162 61.111 0.00 0.00 42.39 3.02
1050 1118 1.074752 CGAGAAGAGGAACAAGCAGC 58.925 55.000 0.00 0.00 0.00 5.25
1051 1119 1.074752 GCGAGAAGAGGAACAAGCAG 58.925 55.000 0.00 0.00 0.00 4.24
1052 1120 0.667487 CGCGAGAAGAGGAACAAGCA 60.667 55.000 0.00 0.00 0.00 3.91
1053 1121 1.355066 CCGCGAGAAGAGGAACAAGC 61.355 60.000 8.23 0.00 43.02 4.01
1057 1125 2.881352 CGCCGCGAGAAGAGGAAC 60.881 66.667 8.23 0.00 43.02 3.62
1148 1216 1.283029 CCTTGGCAGAGAAATCTCCCA 59.717 52.381 6.81 5.69 43.88 4.37
1222 1290 2.636830 CAAAGCGAGATCCCAAGACAT 58.363 47.619 0.00 0.00 0.00 3.06
1234 1302 3.120060 CCAAGAAGATGAACCAAAGCGAG 60.120 47.826 0.00 0.00 0.00 5.03
1262 1330 1.154225 GCGGTCACAAAAGCATCGG 60.154 57.895 0.00 0.00 0.00 4.18
1317 1389 0.684153 ACATCGCCCAAATTCCCTGG 60.684 55.000 0.00 0.00 0.00 4.45
1380 1452 6.214615 TGGGTTTATGAGAAGGATCAAGTGTA 59.785 38.462 0.00 0.00 31.76 2.90
1386 1458 5.032846 AGAGTGGGTTTATGAGAAGGATCA 58.967 41.667 0.00 0.00 0.00 2.92
1391 1463 8.097662 ACTAAAGAAGAGTGGGTTTATGAGAAG 58.902 37.037 0.00 0.00 0.00 2.85
1422 1498 6.478344 CCAGAAAACAGAGTAGAGATGCATAC 59.522 42.308 0.00 0.00 0.00 2.39
1458 1535 1.203441 TTGTGGCAGAGGCAGAGGAT 61.203 55.000 0.00 0.00 43.71 3.24
1460 1537 1.673665 GTTGTGGCAGAGGCAGAGG 60.674 63.158 0.00 0.00 43.71 3.69
1494 1571 6.925718 TCTTACATCAATCTAGGATGCGAAAG 59.074 38.462 7.22 8.44 44.68 2.62
1516 1593 4.553323 ACGTTACGCTGTTCTACAATCTT 58.447 39.130 4.09 0.00 0.00 2.40
1544 1621 2.001361 AAGCTGAGATTGCCGCATGC 62.001 55.000 7.91 7.91 41.77 4.06
1545 1622 1.302366 TAAGCTGAGATTGCCGCATG 58.698 50.000 0.00 0.00 0.00 4.06
1548 1625 3.312421 TGTAATTAAGCTGAGATTGCCGC 59.688 43.478 0.00 0.00 0.00 6.53
1586 1693 2.095466 GTCCATTGCCGTTTCGAAATGA 60.095 45.455 27.65 11.39 34.84 2.57
1602 1709 7.537596 TGTTTCAATCACCAATTAAGTCCAT 57.462 32.000 0.00 0.00 0.00 3.41
1603 1710 6.968263 TGTTTCAATCACCAATTAAGTCCA 57.032 33.333 0.00 0.00 0.00 4.02
1607 1714 6.934056 TGGGATGTTTCAATCACCAATTAAG 58.066 36.000 0.00 0.00 29.36 1.85
1653 1760 6.713903 AGCTTGATATGTGAAATCGGAATGAT 59.286 34.615 0.00 0.00 39.67 2.45
1657 1764 5.427378 TGAGCTTGATATGTGAAATCGGAA 58.573 37.500 0.00 0.00 0.00 4.30
1685 1792 1.062587 GCGATTCGGGTTGTGAATGAG 59.937 52.381 8.34 0.00 36.24 2.90
1691 1798 3.496131 CCGGCGATTCGGGTTGTG 61.496 66.667 9.30 0.00 45.78 3.33
1715 1822 7.439056 AGCTTGTGTGGAAAATTTTAACTCATG 59.561 33.333 15.89 17.19 0.00 3.07
1740 1850 3.254166 CCATGTCTTCAAAGTTGGACCAG 59.746 47.826 0.00 0.00 0.00 4.00
1748 1858 3.323979 ACGGAGTACCATGTCTTCAAAGT 59.676 43.478 0.00 0.00 41.94 2.66
1766 1876 1.912001 CGCGGATTGTTTAGTACGGA 58.088 50.000 0.00 0.00 0.00 4.69
1767 1877 0.299597 GCGCGGATTGTTTAGTACGG 59.700 55.000 8.83 0.00 0.00 4.02
1769 1879 1.997606 AGTGCGCGGATTGTTTAGTAC 59.002 47.619 8.83 0.00 0.00 2.73
1771 1881 2.373540 TAGTGCGCGGATTGTTTAGT 57.626 45.000 8.83 0.00 0.00 2.24
1772 1882 2.671396 ACTTAGTGCGCGGATTGTTTAG 59.329 45.455 8.83 1.69 0.00 1.85
1773 1883 2.690786 ACTTAGTGCGCGGATTGTTTA 58.309 42.857 8.83 0.00 0.00 2.01
1782 1932 1.127766 TGCAACATAACTTAGTGCGCG 59.872 47.619 0.00 0.00 0.00 6.86
1785 1935 3.786048 GCGATTGCAACATAACTTAGTGC 59.214 43.478 0.00 0.00 42.15 4.40
1789 1939 3.181515 CGTGGCGATTGCAACATAACTTA 60.182 43.478 13.09 0.00 45.98 2.24
1901 2056 2.043980 CACGGGTAACATGGCCACC 61.044 63.158 8.16 3.56 39.74 4.61
1928 2083 1.803334 TGTCCTTTGCGTGGTCATAC 58.197 50.000 0.00 0.00 0.00 2.39
1950 2105 1.733912 CATCACATGGTGAGGTTGTCG 59.266 52.381 5.25 0.00 46.04 4.35
2021 4704 6.290605 CCCCAAAGACACTTGATTGAATTTT 58.709 36.000 0.00 0.00 0.00 1.82
2022 4705 5.742838 GCCCCAAAGACACTTGATTGAATTT 60.743 40.000 0.00 0.00 0.00 1.82
2023 4706 4.262592 GCCCCAAAGACACTTGATTGAATT 60.263 41.667 0.00 0.00 0.00 2.17
2024 4707 3.259123 GCCCCAAAGACACTTGATTGAAT 59.741 43.478 0.00 0.00 0.00 2.57
2036 4720 0.315251 GTGAAGCTTGCCCCAAAGAC 59.685 55.000 2.10 0.00 0.00 3.01
2042 4726 0.962855 GGAGAAGTGAAGCTTGCCCC 60.963 60.000 2.10 0.00 37.59 5.80
2046 4730 3.405831 TGACATGGAGAAGTGAAGCTTG 58.594 45.455 2.10 0.00 37.59 4.01
2104 4788 6.533367 TGGATGTAACTTTTTCAACAACTTGC 59.467 34.615 0.00 0.00 0.00 4.01
2105 4789 8.647143 ATGGATGTAACTTTTTCAACAACTTG 57.353 30.769 0.00 0.00 0.00 3.16
2163 4847 8.332464 GTTTTTCATAAAACTTTTCCTTTCCGG 58.668 33.333 0.00 0.00 46.14 5.14
2226 4910 4.880696 CCCTTTGAGTTTGAGGAGATGATC 59.119 45.833 0.00 0.00 32.11 2.92
2229 4913 4.026356 ACCCTTTGAGTTTGAGGAGATG 57.974 45.455 0.00 0.00 32.11 2.90
2266 4950 3.536956 TCGTCAGAAAACCACTTGAGT 57.463 42.857 0.00 0.00 0.00 3.41
2269 4953 5.424121 AAGATTCGTCAGAAAACCACTTG 57.576 39.130 0.00 0.00 40.15 3.16
2270 4954 5.733373 GCAAAGATTCGTCAGAAAACCACTT 60.733 40.000 0.00 0.00 40.15 3.16
2272 4956 3.975035 GCAAAGATTCGTCAGAAAACCAC 59.025 43.478 0.00 0.00 40.15 4.16
2290 4974 2.091541 GGATCCGTTCTGAATGGCAAA 58.908 47.619 21.34 7.29 37.48 3.68
2455 5151 5.248870 ACCATGAGTTTGTTTCACAGAAC 57.751 39.130 0.00 0.00 0.00 3.01
2520 5220 1.068753 CCTATGACCGCCTGAGCAG 59.931 63.158 0.00 0.00 39.83 4.24
2529 5229 1.227674 GCTGAAGCCCCTATGACCG 60.228 63.158 0.00 0.00 34.31 4.79
2604 5304 4.152526 CGTCGAAGCTATGATAGTACAGC 58.847 47.826 0.92 0.00 0.00 4.40
2684 5387 7.829378 ACTACTTGAAAGTGACCGATATTTC 57.171 36.000 5.95 0.00 40.07 2.17
2839 5550 5.591472 AGGTTTGTTTTGGTTACTACTGTCC 59.409 40.000 0.00 0.00 0.00 4.02
2969 5725 9.930693 ACCAGAAAGTACTGTTTCTATTCTTAG 57.069 33.333 9.06 3.92 43.52 2.18
2982 5738 7.221067 GTCGATTCTTCATACCAGAAAGTACTG 59.779 40.741 0.00 0.00 33.94 2.74
3027 5800 9.384682 GAATGTTTTTCAGGTATGCAAAAATTG 57.615 29.630 0.00 0.00 34.14 2.32
3038 5829 7.654022 AAAGTGGAAGAATGTTTTTCAGGTA 57.346 32.000 0.00 0.00 0.00 3.08
3039 5830 6.544928 AAAGTGGAAGAATGTTTTTCAGGT 57.455 33.333 0.00 0.00 0.00 4.00
3040 5831 8.940768 TTAAAAGTGGAAGAATGTTTTTCAGG 57.059 30.769 0.00 0.00 0.00 3.86
3234 6052 5.931294 TGGTTATCTTGGACTGTTGTGTTA 58.069 37.500 0.00 0.00 0.00 2.41
3255 6074 3.122948 CGACAGTAAAACCGTCAAGATGG 59.877 47.826 6.77 6.77 43.15 3.51
3256 6075 3.739300 ACGACAGTAAAACCGTCAAGATG 59.261 43.478 0.00 0.00 0.00 2.90
3258 6077 3.441496 ACGACAGTAAAACCGTCAAGA 57.559 42.857 0.00 0.00 0.00 3.02
3260 6079 4.681025 GTCATACGACAGTAAAACCGTCAA 59.319 41.667 0.00 0.00 42.13 3.18
3261 6080 4.022935 AGTCATACGACAGTAAAACCGTCA 60.023 41.667 0.00 0.00 45.23 4.35
3262 6081 4.479619 AGTCATACGACAGTAAAACCGTC 58.520 43.478 0.00 0.00 45.23 4.79
3263 6082 4.510038 AGTCATACGACAGTAAAACCGT 57.490 40.909 0.00 0.00 45.23 4.83
3264 6083 5.176223 ACAAAGTCATACGACAGTAAAACCG 59.824 40.000 0.00 0.00 45.23 4.44
3265 6084 6.535274 ACAAAGTCATACGACAGTAAAACC 57.465 37.500 0.00 0.00 45.23 3.27
3266 6085 8.219105 CCTTACAAAGTCATACGACAGTAAAAC 58.781 37.037 0.00 0.00 45.23 2.43
3267 6086 7.927629 ACCTTACAAAGTCATACGACAGTAAAA 59.072 33.333 0.00 0.00 45.23 1.52
3268 6087 7.436118 ACCTTACAAAGTCATACGACAGTAAA 58.564 34.615 0.00 0.00 45.23 2.01
3269 6088 6.985117 ACCTTACAAAGTCATACGACAGTAA 58.015 36.000 0.00 0.00 45.23 2.24
3270 6089 6.579666 ACCTTACAAAGTCATACGACAGTA 57.420 37.500 0.00 0.00 45.23 2.74
3271 6090 5.464030 ACCTTACAAAGTCATACGACAGT 57.536 39.130 0.00 0.00 45.23 3.55
3272 6091 6.780706 AAACCTTACAAAGTCATACGACAG 57.219 37.500 0.00 0.00 45.23 3.51
3273 6092 6.539464 ACAAAACCTTACAAAGTCATACGACA 59.461 34.615 0.00 0.00 45.23 4.35
3274 6093 6.849305 CACAAAACCTTACAAAGTCATACGAC 59.151 38.462 0.00 0.00 42.95 4.34
3275 6094 6.762187 TCACAAAACCTTACAAAGTCATACGA 59.238 34.615 0.00 0.00 0.00 3.43
3276 6095 6.950545 TCACAAAACCTTACAAAGTCATACG 58.049 36.000 0.00 0.00 0.00 3.06
3277 6096 8.149973 TCTCACAAAACCTTACAAAGTCATAC 57.850 34.615 0.00 0.00 0.00 2.39
3278 6097 8.740123 TTCTCACAAAACCTTACAAAGTCATA 57.260 30.769 0.00 0.00 0.00 2.15
3279 6098 7.639113 TTCTCACAAAACCTTACAAAGTCAT 57.361 32.000 0.00 0.00 0.00 3.06
3280 6099 7.639113 ATTCTCACAAAACCTTACAAAGTCA 57.361 32.000 0.00 0.00 0.00 3.41
3296 6115 9.661563 ACGACCACTTTATTAATTATTCTCACA 57.338 29.630 0.00 0.00 0.00 3.58
3305 6124 8.682710 ACAATGCATACGACCACTTTATTAATT 58.317 29.630 0.00 0.00 0.00 1.40
3306 6125 8.220755 ACAATGCATACGACCACTTTATTAAT 57.779 30.769 0.00 0.00 0.00 1.40
3307 6126 7.618502 ACAATGCATACGACCACTTTATTAA 57.381 32.000 0.00 0.00 0.00 1.40
3308 6127 7.334671 TGAACAATGCATACGACCACTTTATTA 59.665 33.333 0.00 0.00 0.00 0.98
3309 6128 6.150307 TGAACAATGCATACGACCACTTTATT 59.850 34.615 0.00 0.00 0.00 1.40
3310 6129 5.645929 TGAACAATGCATACGACCACTTTAT 59.354 36.000 0.00 0.00 0.00 1.40
3311 6130 4.998033 TGAACAATGCATACGACCACTTTA 59.002 37.500 0.00 0.00 0.00 1.85
3312 6131 3.818210 TGAACAATGCATACGACCACTTT 59.182 39.130 0.00 0.00 0.00 2.66
3313 6132 3.407698 TGAACAATGCATACGACCACTT 58.592 40.909 0.00 0.00 0.00 3.16
3314 6133 3.002791 CTGAACAATGCATACGACCACT 58.997 45.455 0.00 0.00 0.00 4.00
3315 6134 3.000041 TCTGAACAATGCATACGACCAC 59.000 45.455 0.00 0.00 0.00 4.16
3316 6135 3.326836 TCTGAACAATGCATACGACCA 57.673 42.857 0.00 0.00 0.00 4.02
3317 6136 3.546815 GCATCTGAACAATGCATACGACC 60.547 47.826 0.00 0.00 46.93 4.79
3318 6137 3.611517 GCATCTGAACAATGCATACGAC 58.388 45.455 0.00 0.00 46.93 4.34
3319 6138 3.950087 GCATCTGAACAATGCATACGA 57.050 42.857 0.00 0.00 46.93 3.43
3326 6145 1.404391 GGCCTCTGCATCTGAACAATG 59.596 52.381 0.00 0.00 40.13 2.82
3327 6146 1.760192 GGCCTCTGCATCTGAACAAT 58.240 50.000 0.00 0.00 40.13 2.71
3328 6147 0.674581 CGGCCTCTGCATCTGAACAA 60.675 55.000 0.00 0.00 40.13 2.83
3329 6148 1.078918 CGGCCTCTGCATCTGAACA 60.079 57.895 0.00 0.00 40.13 3.18
3330 6149 1.817099 CCGGCCTCTGCATCTGAAC 60.817 63.158 0.00 0.00 40.13 3.18
3331 6150 2.586245 CCGGCCTCTGCATCTGAA 59.414 61.111 0.00 0.00 40.13 3.02
3332 6151 3.473647 CCCGGCCTCTGCATCTGA 61.474 66.667 0.00 0.00 40.13 3.27
3333 6152 4.559063 CCCCGGCCTCTGCATCTG 62.559 72.222 0.00 0.00 40.13 2.90
3345 6164 3.945064 AAAGGAGGAGGACCCCCGG 62.945 68.421 0.00 0.00 37.58 5.73
3346 6165 1.911702 GAAAAGGAGGAGGACCCCCG 61.912 65.000 0.00 0.00 37.58 5.73
3347 6166 0.550393 AGAAAAGGAGGAGGACCCCC 60.550 60.000 0.00 0.00 36.73 5.40
3348 6167 2.265526 TAGAAAAGGAGGAGGACCCC 57.734 55.000 0.00 0.00 36.73 4.95
3349 6168 4.652679 TTTTAGAAAAGGAGGAGGACCC 57.347 45.455 0.00 0.00 36.73 4.46
3378 6197 3.088532 TGCCATTCAGCCGTTAAGATTT 58.911 40.909 0.00 0.00 0.00 2.17
3391 6210 3.037992 GCGTGCACGATGCCATTCA 62.038 57.895 41.19 0.00 44.23 2.57
3458 6280 2.675032 CGCATGCACTTTGTAGAGGAGA 60.675 50.000 19.57 0.00 0.00 3.71
3462 6291 0.247419 CGCGCATGCACTTTGTAGAG 60.247 55.000 19.57 0.00 42.97 2.43
3494 6338 5.765182 CCCTGTAATTCAGAGACAAAACTGT 59.235 40.000 6.50 0.00 46.27 3.55
3496 6340 5.941788 ACCCTGTAATTCAGAGACAAAACT 58.058 37.500 6.50 0.00 46.27 2.66
3497 6341 6.635030 AACCCTGTAATTCAGAGACAAAAC 57.365 37.500 6.50 0.00 46.27 2.43
3500 6362 5.313712 GGAAACCCTGTAATTCAGAGACAA 58.686 41.667 6.50 0.00 46.27 3.18
4189 11039 0.605319 TGAAGGTGCCTAAACAGCGG 60.605 55.000 0.00 0.00 42.81 5.52
4234 11084 2.240493 ACCGACACCAAAAGAGTCAG 57.760 50.000 0.00 0.00 35.98 3.51
4291 11142 5.754890 CAGTTTTCAGTGCAAAAATAGCCTT 59.245 36.000 0.00 0.00 0.00 4.35
4294 11145 6.208644 TCTCAGTTTTCAGTGCAAAAATAGC 58.791 36.000 0.00 0.00 0.00 2.97
4355 11206 2.943033 GTTGAGGACGGTTTGGGATATG 59.057 50.000 0.00 0.00 0.00 1.78
4385 11236 2.920384 TGCACGTGGACTGGCCTA 60.920 61.111 18.88 0.00 37.63 3.93
4386 11237 4.320456 CTGCACGTGGACTGGCCT 62.320 66.667 18.88 0.00 37.63 5.19
4387 11238 2.725203 TTACTGCACGTGGACTGGCC 62.725 60.000 18.88 0.00 37.10 5.36
4388 11239 0.882927 TTTACTGCACGTGGACTGGC 60.883 55.000 18.88 1.41 0.00 4.85
4389 11240 1.531149 CTTTTACTGCACGTGGACTGG 59.469 52.381 18.88 5.39 0.00 4.00
4390 11241 1.069906 GCTTTTACTGCACGTGGACTG 60.070 52.381 18.88 6.20 0.00 3.51
4391 11242 1.226746 GCTTTTACTGCACGTGGACT 58.773 50.000 18.88 6.03 0.00 3.85
4392 11243 0.941542 TGCTTTTACTGCACGTGGAC 59.058 50.000 18.88 1.42 35.31 4.02
4393 11244 1.804151 GATGCTTTTACTGCACGTGGA 59.196 47.619 18.88 14.63 43.59 4.02
4394 11245 1.806542 AGATGCTTTTACTGCACGTGG 59.193 47.619 18.88 3.72 43.59 4.94
4395 11246 2.159653 GGAGATGCTTTTACTGCACGTG 60.160 50.000 12.28 12.28 43.59 4.49
4396 11247 2.076863 GGAGATGCTTTTACTGCACGT 58.923 47.619 0.00 0.00 43.59 4.49
4397 11248 2.076100 TGGAGATGCTTTTACTGCACG 58.924 47.619 0.00 0.00 43.59 5.34
4398 11249 3.253188 TGTTGGAGATGCTTTTACTGCAC 59.747 43.478 0.00 0.00 43.59 4.57
4399 11250 3.485394 TGTTGGAGATGCTTTTACTGCA 58.515 40.909 0.00 0.00 44.95 4.41
4400 11251 3.671702 GCTGTTGGAGATGCTTTTACTGC 60.672 47.826 0.00 0.00 0.00 4.40
4401 11252 3.119708 GGCTGTTGGAGATGCTTTTACTG 60.120 47.826 0.00 0.00 0.00 2.74
4402 11253 3.084786 GGCTGTTGGAGATGCTTTTACT 58.915 45.455 0.00 0.00 0.00 2.24
4403 11254 2.159517 CGGCTGTTGGAGATGCTTTTAC 60.160 50.000 0.00 0.00 0.00 2.01
4407 11258 2.042831 GCGGCTGTTGGAGATGCTT 61.043 57.895 0.00 0.00 0.00 3.91
4449 11308 3.909258 AAACAGACGATCGGCGCGT 62.909 57.895 20.98 16.46 46.04 6.01
4515 11375 2.883468 GCTAGAGCTACTCGCGCGA 61.883 63.158 32.60 32.60 43.79 5.87
4587 11448 7.094162 TGTGTTTGATCTTCTTGGTTGTGTTTA 60.094 33.333 0.00 0.00 0.00 2.01
4697 11558 9.847706 ATTTGTGCGTTTGATATTGTATTGTTA 57.152 25.926 0.00 0.00 0.00 2.41
4749 11613 0.039764 TCTCATCGAGGAGTGGTGGT 59.960 55.000 24.89 0.00 36.30 4.16
4809 11673 4.082245 CCCGTTTTGTTGCCTCTTATCATT 60.082 41.667 0.00 0.00 0.00 2.57
4816 11680 2.200337 GGCCCGTTTTGTTGCCTCT 61.200 57.895 0.00 0.00 40.77 3.69
4868 11732 3.389329 TCTCATTATGAGCTCTTGGGACC 59.611 47.826 16.72 0.00 43.95 4.46
4885 11749 7.869937 CGTGGTCAAGATGTAGATTAATCTCAT 59.130 37.037 21.17 20.95 38.32 2.90
4891 11755 5.105513 TGAGCGTGGTCAAGATGTAGATTAA 60.106 40.000 0.00 0.00 0.00 1.40
4906 11770 0.817654 TCATCGAGAATGAGCGTGGT 59.182 50.000 0.00 0.00 39.52 4.16
4980 11844 4.469945 TGAGAGGACCGGTTAGATTTTGAT 59.530 41.667 9.42 0.00 0.00 2.57
4981 11845 3.835978 TGAGAGGACCGGTTAGATTTTGA 59.164 43.478 9.42 0.00 0.00 2.69
4991 11855 0.824759 GCTATTGTGAGAGGACCGGT 59.175 55.000 6.92 6.92 0.00 5.28
5049 11914 0.319083 TCAGACGGCGGCTAGAAAAA 59.681 50.000 18.31 0.00 0.00 1.94
5064 11929 4.654915 TCTTGATTTCCACAATGCTCAGA 58.345 39.130 0.00 0.00 0.00 3.27
5118 11983 3.795877 ACAAAGAGGCAAACATTTGTGG 58.204 40.909 6.24 0.00 42.56 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.