Multiple sequence alignment - TraesCS2B01G340700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G340700 chr2B 100.000 7462 0 0 1 7462 486197723 486190262 0.000000e+00 13780.0
1 TraesCS2B01G340700 chr2B 86.594 731 68 14 6729 7445 569506835 569507549 0.000000e+00 780.0
2 TraesCS2B01G340700 chr2B 92.857 476 24 6 2 467 4177125 4177600 0.000000e+00 682.0
3 TraesCS2B01G340700 chr2B 84.228 298 41 4 2865 3158 132080951 132080656 1.230000e-72 285.0
4 TraesCS2B01G340700 chr2B 89.024 82 7 2 7367 7446 569507531 569507612 4.760000e-17 100.0
5 TraesCS2B01G340700 chr2B 98.000 50 1 0 2703 2752 486194927 486194878 3.710000e-13 87.9
6 TraesCS2B01G340700 chr2B 98.000 50 1 0 2797 2846 486195021 486194972 3.710000e-13 87.9
7 TraesCS2B01G340700 chr2D 95.482 3165 96 15 1317 4460 412838679 412835541 0.000000e+00 5009.0
8 TraesCS2B01G340700 chr2D 91.885 2292 78 35 4475 6694 412835561 412833306 0.000000e+00 3103.0
9 TraesCS2B01G340700 chr2D 93.020 831 41 9 465 1289 412839602 412838783 0.000000e+00 1197.0
10 TraesCS2B01G340700 chr2D 98.214 56 1 0 6675 6730 412833300 412833245 1.710000e-16 99.0
11 TraesCS2B01G340700 chr2D 98.113 53 1 0 2794 2846 412837296 412837244 7.970000e-15 93.5
12 TraesCS2B01G340700 chr2D 91.525 59 3 1 2696 2752 412837208 412837150 6.210000e-11 80.5
13 TraesCS2B01G340700 chr2A 95.525 3151 100 13 1317 4452 580023045 580019921 0.000000e+00 5000.0
14 TraesCS2B01G340700 chr2A 93.830 1718 56 24 5055 6731 580019424 580017716 0.000000e+00 2540.0
15 TraesCS2B01G340700 chr2A 92.970 825 51 6 465 1282 580023984 580023160 0.000000e+00 1195.0
16 TraesCS2B01G340700 chr2A 97.647 510 10 2 4488 4996 580019929 580019421 0.000000e+00 874.0
17 TraesCS2B01G340700 chr2A 94.915 59 1 1 2696 2752 580021580 580021522 2.870000e-14 91.6
18 TraesCS2B01G340700 chr2A 79.412 102 14 7 6729 6827 43394032 43393935 1.740000e-06 65.8
19 TraesCS2B01G340700 chr5B 96.042 480 10 4 1 472 366501279 366500801 0.000000e+00 773.0
20 TraesCS2B01G340700 chr5B 92.946 482 24 7 1 472 282025339 282025820 0.000000e+00 693.0
21 TraesCS2B01G340700 chr5B 79.798 99 14 6 6731 6827 179241205 179241111 4.830000e-07 67.6
22 TraesCS2B01G340700 chr3A 95.597 477 11 7 1 467 606521691 606522167 0.000000e+00 756.0
23 TraesCS2B01G340700 chr3A 93.305 478 22 7 1 468 677832471 677831994 0.000000e+00 697.0
24 TraesCS2B01G340700 chr3A 90.385 52 3 2 2648 2697 36766000 36766051 4.830000e-07 67.6
25 TraesCS2B01G340700 chr6A 94.979 478 13 8 1 469 558030008 558030483 0.000000e+00 739.0
26 TraesCS2B01G340700 chr6A 94.055 471 21 2 1 470 67009949 67009485 0.000000e+00 708.0
27 TraesCS2B01G340700 chr3B 94.759 477 14 8 1 467 545642719 545643194 0.000000e+00 732.0
28 TraesCS2B01G340700 chr7A 94.351 478 17 7 1 468 199857331 199856854 0.000000e+00 725.0
29 TraesCS2B01G340700 chrUn 91.864 381 30 1 7067 7446 421247960 421248340 1.430000e-146 531.0
30 TraesCS2B01G340700 chrUn 91.864 381 30 1 7067 7446 431604530 431604910 1.430000e-146 531.0
31 TraesCS2B01G340700 chrUn 91.864 381 30 1 7067 7446 468178796 468178416 1.430000e-146 531.0
32 TraesCS2B01G340700 chrUn 89.851 335 32 2 6732 7065 53043329 53043662 5.350000e-116 429.0
33 TraesCS2B01G340700 chrUn 82.222 270 33 5 6731 6998 132704156 132704412 1.260000e-52 219.0
34 TraesCS2B01G340700 chrUn 85.135 74 9 2 7372 7445 132704927 132704998 2.890000e-09 75.0
35 TraesCS2B01G340700 chr7B 85.000 280 25 6 6732 7009 497965490 497965226 1.230000e-67 268.0
36 TraesCS2B01G340700 chr5D 83.333 306 33 8 6730 7032 158242755 158242465 4.440000e-67 267.0
37 TraesCS2B01G340700 chr4D 91.525 59 4 1 3158 3215 504189468 504189526 6.210000e-11 80.5
38 TraesCS2B01G340700 chr6B 87.143 70 6 1 3702 3771 669022781 669022847 8.030000e-10 76.8
39 TraesCS2B01G340700 chr6B 87.143 70 6 1 3702 3771 669030433 669030499 8.030000e-10 76.8
40 TraesCS2B01G340700 chr6B 77.778 99 16 6 6731 6827 408675708 408675614 1.000000e-03 56.5
41 TraesCS2B01G340700 chr1D 79.798 99 14 6 6731 6827 485171506 485171412 4.830000e-07 67.6
42 TraesCS2B01G340700 chr1A 81.481 81 10 5 6730 6808 567461572 567461649 2.250000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G340700 chr2B 486190262 486197723 7461 True 4651.933333 13780 98.666667 1 7462 3 chr2B.!!$R2 7461
1 TraesCS2B01G340700 chr2B 569506835 569507612 777 False 440.000000 780 87.809000 6729 7446 2 chr2B.!!$F2 717
2 TraesCS2B01G340700 chr2D 412833245 412839602 6357 True 1597.000000 5009 94.706500 465 6730 6 chr2D.!!$R1 6265
3 TraesCS2B01G340700 chr2A 580017716 580023984 6268 True 1940.120000 5000 94.977400 465 6731 5 chr2A.!!$R2 6266

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
336 337 0.037303 TGCAAGGAAAGAGCTGAGGG 59.963 55.000 0.00 0.0 0.00 4.30 F
443 444 0.251653 ACCTGGAAGCGAGACTACCA 60.252 55.000 0.00 0.0 0.00 3.25 F
1279 1286 0.107410 ATGGGCGCGGACTGAATTTA 60.107 50.000 8.83 0.0 0.00 1.40 F
1579 1670 1.728971 CCGCACATGTTTCTCTCTGTC 59.271 52.381 0.00 0.0 0.00 3.51 F
2369 2471 2.224305 GGATCCCACTCTGGTTAATCCG 60.224 54.545 0.00 0.0 39.52 4.18 F
4172 4280 0.601841 CCAACACCACCTACGACACC 60.602 60.000 0.00 0.0 0.00 4.16 F
5251 5363 0.178981 AACTGACATGGGCTGCTGTT 60.179 50.000 0.00 0.0 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1172 1175 0.179137 CGAGCTCACGCATAGACCAA 60.179 55.000 15.40 0.00 39.10 3.67 R
1542 1633 1.338769 GCGGTGGTGGTCTCTACAAAT 60.339 52.381 0.00 0.00 0.00 2.32 R
2791 2896 1.021202 TGTTCTGCAAACCCAAGTCG 58.979 50.000 8.60 0.00 0.00 4.18 R
3336 3441 2.293399 GCGGTCTGAACCAGAAAAACAT 59.707 45.455 0.00 0.00 46.86 2.71 R
4321 4429 0.037975 CAACACCTCCAGCAATTGCC 60.038 55.000 26.45 9.18 43.38 4.52 R
6085 6261 0.102120 CACGCTAGCCTCCTCTCAAG 59.898 60.000 9.66 0.00 0.00 3.02 R
7009 7229 0.323451 AGGGCGAAAATGGGAGGAAC 60.323 55.000 0.00 0.00 0.00 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.338291 CGCTCTAAATAAATGGATTCAATCATG 57.662 33.333 0.00 0.00 0.00 3.07
33 34 8.991783 ATAAATGGATTCAATCATGTGACTCT 57.008 30.769 0.00 0.00 30.20 3.24
35 36 8.812513 AAATGGATTCAATCATGTGACTCTAA 57.187 30.769 0.00 0.00 30.20 2.10
36 37 8.991783 AATGGATTCAATCATGTGACTCTAAT 57.008 30.769 0.00 0.00 30.20 1.73
37 38 8.991783 ATGGATTCAATCATGTGACTCTAATT 57.008 30.769 0.00 0.00 30.20 1.40
39 40 9.330063 TGGATTCAATCATGTGACTCTAATTAC 57.670 33.333 0.00 0.00 30.20 1.89
40 41 9.553064 GGATTCAATCATGTGACTCTAATTACT 57.447 33.333 0.00 0.00 30.20 2.24
43 44 8.634475 TCAATCATGTGACTCTAATTACTTCG 57.366 34.615 0.00 0.00 0.00 3.79
44 45 7.706607 TCAATCATGTGACTCTAATTACTTCGG 59.293 37.037 0.00 0.00 0.00 4.30
45 46 6.769134 TCATGTGACTCTAATTACTTCGGA 57.231 37.500 0.00 0.00 0.00 4.55
46 47 7.348080 TCATGTGACTCTAATTACTTCGGAT 57.652 36.000 0.00 0.00 0.00 4.18
47 48 7.782049 TCATGTGACTCTAATTACTTCGGATT 58.218 34.615 0.00 0.00 0.00 3.01
48 49 7.706607 TCATGTGACTCTAATTACTTCGGATTG 59.293 37.037 0.00 0.00 0.00 2.67
49 50 6.931838 TGTGACTCTAATTACTTCGGATTGT 58.068 36.000 0.00 0.00 0.00 2.71
50 51 7.383687 TGTGACTCTAATTACTTCGGATTGTT 58.616 34.615 0.00 0.00 0.00 2.83
51 52 8.525316 TGTGACTCTAATTACTTCGGATTGTTA 58.475 33.333 0.00 0.00 0.00 2.41
52 53 9.530633 GTGACTCTAATTACTTCGGATTGTTAT 57.469 33.333 0.00 0.00 0.00 1.89
53 54 9.529325 TGACTCTAATTACTTCGGATTGTTATG 57.471 33.333 0.00 0.00 0.00 1.90
54 55 9.530633 GACTCTAATTACTTCGGATTGTTATGT 57.469 33.333 0.00 0.00 0.00 2.29
55 56 9.314321 ACTCTAATTACTTCGGATTGTTATGTG 57.686 33.333 0.00 0.00 0.00 3.21
56 57 8.138365 TCTAATTACTTCGGATTGTTATGTGC 57.862 34.615 0.00 0.00 0.00 4.57
57 58 6.751514 AATTACTTCGGATTGTTATGTGCA 57.248 33.333 0.00 0.00 0.00 4.57
58 59 5.539582 TTACTTCGGATTGTTATGTGCAC 57.460 39.130 10.75 10.75 0.00 4.57
59 60 3.407698 ACTTCGGATTGTTATGTGCACA 58.592 40.909 24.08 24.08 0.00 4.57
60 61 3.188460 ACTTCGGATTGTTATGTGCACAC 59.812 43.478 24.37 10.59 0.00 3.82
61 62 3.052455 TCGGATTGTTATGTGCACACT 57.948 42.857 24.37 13.90 0.00 3.55
62 63 4.195225 TCGGATTGTTATGTGCACACTA 57.805 40.909 24.37 12.86 0.00 2.74
63 64 4.570930 TCGGATTGTTATGTGCACACTAA 58.429 39.130 24.37 17.80 0.00 2.24
64 65 4.629634 TCGGATTGTTATGTGCACACTAAG 59.370 41.667 24.37 7.02 0.00 2.18
65 66 4.662145 GGATTGTTATGTGCACACTAAGC 58.338 43.478 24.37 16.31 0.00 3.09
66 67 3.804518 TTGTTATGTGCACACTAAGCG 57.195 42.857 24.37 0.00 33.85 4.68
67 68 3.033368 TGTTATGTGCACACTAAGCGA 57.967 42.857 24.37 0.00 33.85 4.93
68 69 2.993220 TGTTATGTGCACACTAAGCGAG 59.007 45.455 24.37 0.00 33.85 5.03
69 70 2.293677 TATGTGCACACTAAGCGAGG 57.706 50.000 24.37 0.00 33.85 4.63
70 71 0.321671 ATGTGCACACTAAGCGAGGT 59.678 50.000 24.37 0.00 33.85 3.85
71 72 0.599991 TGTGCACACTAAGCGAGGTG 60.600 55.000 17.42 4.85 39.13 4.00
72 73 1.667830 TGCACACTAAGCGAGGTGC 60.668 57.895 19.05 19.05 45.37 5.01
82 83 3.226884 GCGAGGTGCAGTTAGGAAA 57.773 52.632 0.00 0.00 45.45 3.13
83 84 1.079503 GCGAGGTGCAGTTAGGAAAG 58.920 55.000 0.00 0.00 45.45 2.62
84 85 1.337823 GCGAGGTGCAGTTAGGAAAGA 60.338 52.381 0.00 0.00 45.45 2.52
85 86 2.870435 GCGAGGTGCAGTTAGGAAAGAA 60.870 50.000 0.00 0.00 45.45 2.52
86 87 3.399330 CGAGGTGCAGTTAGGAAAGAAA 58.601 45.455 0.00 0.00 0.00 2.52
87 88 3.813166 CGAGGTGCAGTTAGGAAAGAAAA 59.187 43.478 0.00 0.00 0.00 2.29
88 89 4.455877 CGAGGTGCAGTTAGGAAAGAAAAT 59.544 41.667 0.00 0.00 0.00 1.82
89 90 5.617751 CGAGGTGCAGTTAGGAAAGAAAATG 60.618 44.000 0.00 0.00 0.00 2.32
90 91 5.140454 AGGTGCAGTTAGGAAAGAAAATGT 58.860 37.500 0.00 0.00 0.00 2.71
91 92 5.598417 AGGTGCAGTTAGGAAAGAAAATGTT 59.402 36.000 0.00 0.00 0.00 2.71
92 93 6.098266 AGGTGCAGTTAGGAAAGAAAATGTTT 59.902 34.615 0.00 0.00 0.00 2.83
93 94 6.761242 GGTGCAGTTAGGAAAGAAAATGTTTT 59.239 34.615 0.00 0.00 0.00 2.43
94 95 7.042725 GGTGCAGTTAGGAAAGAAAATGTTTTC 60.043 37.037 9.61 9.61 45.22 2.29
113 114 9.683069 ATGTTTTCTAATTAAAGTGCTTGAGTG 57.317 29.630 0.00 0.00 0.00 3.51
114 115 8.898761 TGTTTTCTAATTAAAGTGCTTGAGTGA 58.101 29.630 0.00 0.00 0.00 3.41
115 116 9.899226 GTTTTCTAATTAAAGTGCTTGAGTGAT 57.101 29.630 0.00 0.00 0.00 3.06
122 123 7.817418 TTAAAGTGCTTGAGTGATTTAAGGT 57.183 32.000 0.00 0.00 0.00 3.50
123 124 8.911918 TTAAAGTGCTTGAGTGATTTAAGGTA 57.088 30.769 0.00 0.00 0.00 3.08
124 125 7.817418 AAAGTGCTTGAGTGATTTAAGGTAA 57.183 32.000 0.00 0.00 0.00 2.85
125 126 7.440523 AAGTGCTTGAGTGATTTAAGGTAAG 57.559 36.000 0.00 0.00 0.00 2.34
126 127 5.940470 AGTGCTTGAGTGATTTAAGGTAAGG 59.060 40.000 0.00 0.00 0.00 2.69
127 128 5.705905 GTGCTTGAGTGATTTAAGGTAAGGT 59.294 40.000 0.00 0.00 0.00 3.50
128 129 6.206829 GTGCTTGAGTGATTTAAGGTAAGGTT 59.793 38.462 0.00 0.00 0.00 3.50
129 130 7.389607 GTGCTTGAGTGATTTAAGGTAAGGTTA 59.610 37.037 0.00 0.00 0.00 2.85
130 131 7.940137 TGCTTGAGTGATTTAAGGTAAGGTTAA 59.060 33.333 0.00 0.00 0.00 2.01
131 132 8.957466 GCTTGAGTGATTTAAGGTAAGGTTAAT 58.043 33.333 0.00 0.00 0.00 1.40
247 248 9.874205 TCCTAAAGAAATTTGCAATAATGGAAG 57.126 29.630 0.00 0.00 38.19 3.46
248 249 9.101655 CCTAAAGAAATTTGCAATAATGGAAGG 57.898 33.333 0.00 0.00 38.19 3.46
249 250 9.657419 CTAAAGAAATTTGCAATAATGGAAGGT 57.343 29.630 0.00 0.00 38.19 3.50
252 253 9.822185 AAGAAATTTGCAATAATGGAAGGTATC 57.178 29.630 0.00 0.00 38.19 2.24
253 254 8.137437 AGAAATTTGCAATAATGGAAGGTATCG 58.863 33.333 0.00 0.00 38.19 2.92
254 255 5.766150 TTTGCAATAATGGAAGGTATCGG 57.234 39.130 0.00 0.00 38.19 4.18
255 256 4.431416 TGCAATAATGGAAGGTATCGGT 57.569 40.909 0.00 0.00 0.00 4.69
256 257 4.787551 TGCAATAATGGAAGGTATCGGTT 58.212 39.130 0.00 0.00 0.00 4.44
257 258 4.578516 TGCAATAATGGAAGGTATCGGTTG 59.421 41.667 0.00 0.00 0.00 3.77
258 259 4.819630 GCAATAATGGAAGGTATCGGTTGA 59.180 41.667 0.00 0.00 0.00 3.18
259 260 5.473504 GCAATAATGGAAGGTATCGGTTGAT 59.526 40.000 0.00 0.00 38.67 2.57
260 261 6.016276 GCAATAATGGAAGGTATCGGTTGATT 60.016 38.462 0.00 0.00 35.99 2.57
261 262 7.470009 GCAATAATGGAAGGTATCGGTTGATTT 60.470 37.037 0.00 0.00 35.99 2.17
262 263 5.835113 AATGGAAGGTATCGGTTGATTTG 57.165 39.130 0.00 0.00 35.99 2.32
263 264 3.616219 TGGAAGGTATCGGTTGATTTGG 58.384 45.455 0.00 0.00 35.99 3.28
264 265 3.264706 TGGAAGGTATCGGTTGATTTGGA 59.735 43.478 0.00 0.00 35.99 3.53
265 266 4.080015 TGGAAGGTATCGGTTGATTTGGAT 60.080 41.667 0.00 0.00 35.99 3.41
266 267 5.131308 TGGAAGGTATCGGTTGATTTGGATA 59.869 40.000 0.00 0.00 35.99 2.59
267 268 6.059484 GGAAGGTATCGGTTGATTTGGATAA 58.941 40.000 0.00 0.00 35.99 1.75
268 269 6.204882 GGAAGGTATCGGTTGATTTGGATAAG 59.795 42.308 0.00 0.00 35.99 1.73
269 270 6.248569 AGGTATCGGTTGATTTGGATAAGT 57.751 37.500 0.00 0.00 35.99 2.24
270 271 6.659824 AGGTATCGGTTGATTTGGATAAGTT 58.340 36.000 0.00 0.00 35.99 2.66
271 272 7.798071 AGGTATCGGTTGATTTGGATAAGTTA 58.202 34.615 0.00 0.00 35.99 2.24
272 273 7.931948 AGGTATCGGTTGATTTGGATAAGTTAG 59.068 37.037 0.00 0.00 35.99 2.34
273 274 7.713942 GGTATCGGTTGATTTGGATAAGTTAGT 59.286 37.037 0.00 0.00 35.99 2.24
274 275 9.754382 GTATCGGTTGATTTGGATAAGTTAGTA 57.246 33.333 0.00 0.00 35.99 1.82
276 277 9.675464 ATCGGTTGATTTGGATAAGTTAGTAAA 57.325 29.630 0.00 0.00 0.00 2.01
277 278 9.675464 TCGGTTGATTTGGATAAGTTAGTAAAT 57.325 29.630 0.00 0.00 0.00 1.40
292 293 8.366671 AGTTAGTAAATTTAGATCCGTGATGC 57.633 34.615 0.00 0.00 0.00 3.91
293 294 5.907197 AGTAAATTTAGATCCGTGATGCG 57.093 39.130 0.00 0.00 40.95 4.73
294 295 5.357257 AGTAAATTTAGATCCGTGATGCGT 58.643 37.500 0.00 0.00 39.32 5.24
295 296 4.536364 AAATTTAGATCCGTGATGCGTG 57.464 40.909 0.00 0.00 39.32 5.34
296 297 1.286501 TTTAGATCCGTGATGCGTGC 58.713 50.000 0.00 0.00 39.32 5.34
297 298 0.174617 TTAGATCCGTGATGCGTGCA 59.825 50.000 0.00 0.00 39.32 4.57
298 299 0.527600 TAGATCCGTGATGCGTGCAC 60.528 55.000 6.82 6.82 39.32 4.57
303 304 3.814009 GTGATGCGTGCACGTTTG 58.186 55.556 36.80 13.00 42.22 2.93
304 305 1.725625 GTGATGCGTGCACGTTTGG 60.726 57.895 36.80 12.61 42.22 3.28
305 306 1.889573 TGATGCGTGCACGTTTGGA 60.890 52.632 36.80 18.12 42.22 3.53
306 307 1.281353 GATGCGTGCACGTTTGGAA 59.719 52.632 36.80 17.86 42.22 3.53
307 308 0.317436 GATGCGTGCACGTTTGGAAA 60.317 50.000 36.80 16.23 42.22 3.13
308 309 0.317770 ATGCGTGCACGTTTGGAAAG 60.318 50.000 36.80 9.58 42.22 2.62
309 310 1.063488 GCGTGCACGTTTGGAAAGT 59.937 52.632 36.80 0.00 42.22 2.66
310 311 0.928451 GCGTGCACGTTTGGAAAGTC 60.928 55.000 36.80 15.01 42.22 3.01
311 312 0.316689 CGTGCACGTTTGGAAAGTCC 60.317 55.000 30.50 0.00 33.87 3.85
312 313 1.021968 GTGCACGTTTGGAAAGTCCT 58.978 50.000 0.00 0.00 37.46 3.85
313 314 1.021202 TGCACGTTTGGAAAGTCCTG 58.979 50.000 0.00 0.00 37.46 3.86
314 315 1.305201 GCACGTTTGGAAAGTCCTGA 58.695 50.000 0.00 0.00 37.46 3.86
315 316 1.880027 GCACGTTTGGAAAGTCCTGAT 59.120 47.619 0.00 0.00 37.46 2.90
316 317 2.293399 GCACGTTTGGAAAGTCCTGATT 59.707 45.455 0.00 0.00 37.46 2.57
317 318 3.243401 GCACGTTTGGAAAGTCCTGATTT 60.243 43.478 0.00 0.00 37.46 2.17
318 319 4.290155 CACGTTTGGAAAGTCCTGATTTG 58.710 43.478 0.00 0.00 37.46 2.32
319 320 3.243401 ACGTTTGGAAAGTCCTGATTTGC 60.243 43.478 0.00 0.00 37.46 3.68
320 321 3.243367 CGTTTGGAAAGTCCTGATTTGCA 60.243 43.478 0.00 0.00 37.46 4.08
321 322 4.692228 GTTTGGAAAGTCCTGATTTGCAA 58.308 39.130 0.00 0.00 43.40 4.08
322 323 4.589216 TTGGAAAGTCCTGATTTGCAAG 57.411 40.909 0.00 0.00 41.24 4.01
323 324 2.892852 TGGAAAGTCCTGATTTGCAAGG 59.107 45.455 0.00 0.00 35.42 3.61
324 325 3.157087 GGAAAGTCCTGATTTGCAAGGA 58.843 45.455 0.46 0.46 32.53 3.36
325 326 3.573967 GGAAAGTCCTGATTTGCAAGGAA 59.426 43.478 6.43 0.00 32.53 3.36
326 327 4.039124 GGAAAGTCCTGATTTGCAAGGAAA 59.961 41.667 6.43 0.00 32.53 3.13
327 328 4.861102 AAGTCCTGATTTGCAAGGAAAG 57.139 40.909 6.43 0.63 31.60 2.62
328 329 4.104383 AGTCCTGATTTGCAAGGAAAGA 57.896 40.909 6.43 0.00 31.60 2.52
329 330 4.077822 AGTCCTGATTTGCAAGGAAAGAG 58.922 43.478 6.43 0.00 31.60 2.85
330 331 2.821969 TCCTGATTTGCAAGGAAAGAGC 59.178 45.455 2.22 0.00 0.00 4.09
331 332 2.824341 CCTGATTTGCAAGGAAAGAGCT 59.176 45.455 0.00 0.00 0.00 4.09
332 333 3.367087 CCTGATTTGCAAGGAAAGAGCTG 60.367 47.826 0.00 0.00 0.00 4.24
333 334 3.489355 TGATTTGCAAGGAAAGAGCTGA 58.511 40.909 0.00 0.00 0.00 4.26
334 335 3.504906 TGATTTGCAAGGAAAGAGCTGAG 59.495 43.478 0.00 0.00 0.00 3.35
335 336 1.901591 TTGCAAGGAAAGAGCTGAGG 58.098 50.000 0.00 0.00 0.00 3.86
336 337 0.037303 TGCAAGGAAAGAGCTGAGGG 59.963 55.000 0.00 0.00 0.00 4.30
337 338 0.679321 GCAAGGAAAGAGCTGAGGGG 60.679 60.000 0.00 0.00 0.00 4.79
338 339 0.695347 CAAGGAAAGAGCTGAGGGGT 59.305 55.000 0.00 0.00 0.00 4.95
339 340 1.909302 CAAGGAAAGAGCTGAGGGGTA 59.091 52.381 0.00 0.00 0.00 3.69
340 341 2.305927 CAAGGAAAGAGCTGAGGGGTAA 59.694 50.000 0.00 0.00 0.00 2.85
341 342 2.632537 AGGAAAGAGCTGAGGGGTAAA 58.367 47.619 0.00 0.00 0.00 2.01
342 343 3.193782 AGGAAAGAGCTGAGGGGTAAAT 58.806 45.455 0.00 0.00 0.00 1.40
343 344 4.371681 AGGAAAGAGCTGAGGGGTAAATA 58.628 43.478 0.00 0.00 0.00 1.40
344 345 4.788617 AGGAAAGAGCTGAGGGGTAAATAA 59.211 41.667 0.00 0.00 0.00 1.40
345 346 5.253096 AGGAAAGAGCTGAGGGGTAAATAAA 59.747 40.000 0.00 0.00 0.00 1.40
346 347 5.357314 GGAAAGAGCTGAGGGGTAAATAAAC 59.643 44.000 0.00 0.00 0.00 2.01
347 348 4.505324 AGAGCTGAGGGGTAAATAAACC 57.495 45.455 0.00 0.00 38.94 3.27
348 349 3.850173 AGAGCTGAGGGGTAAATAAACCA 59.150 43.478 0.00 0.00 41.67 3.67
349 350 4.080299 AGAGCTGAGGGGTAAATAAACCAG 60.080 45.833 0.00 0.00 41.67 4.00
350 351 3.591977 AGCTGAGGGGTAAATAAACCAGT 59.408 43.478 0.00 0.00 41.67 4.00
351 352 3.694566 GCTGAGGGGTAAATAAACCAGTG 59.305 47.826 0.00 0.00 41.67 3.66
352 353 4.566907 GCTGAGGGGTAAATAAACCAGTGA 60.567 45.833 0.00 0.00 41.67 3.41
353 354 5.566469 CTGAGGGGTAAATAAACCAGTGAA 58.434 41.667 0.00 0.00 41.67 3.18
354 355 6.147437 TGAGGGGTAAATAAACCAGTGAAT 57.853 37.500 0.00 0.00 41.67 2.57
355 356 7.273457 TGAGGGGTAAATAAACCAGTGAATA 57.727 36.000 0.00 0.00 41.67 1.75
356 357 7.700846 TGAGGGGTAAATAAACCAGTGAATAA 58.299 34.615 0.00 0.00 41.67 1.40
357 358 8.171400 TGAGGGGTAAATAAACCAGTGAATAAA 58.829 33.333 0.00 0.00 41.67 1.40
358 359 8.959676 AGGGGTAAATAAACCAGTGAATAAAA 57.040 30.769 0.00 0.00 41.67 1.52
359 360 9.382307 AGGGGTAAATAAACCAGTGAATAAAAA 57.618 29.630 0.00 0.00 41.67 1.94
396 397 7.572502 AAAAATCTACGACAGTTAACCTACG 57.427 36.000 0.88 8.03 0.00 3.51
397 398 6.500684 AAATCTACGACAGTTAACCTACGA 57.499 37.500 17.93 2.27 0.00 3.43
398 399 6.500684 AATCTACGACAGTTAACCTACGAA 57.499 37.500 17.93 7.44 0.00 3.85
399 400 5.940192 TCTACGACAGTTAACCTACGAAA 57.060 39.130 17.93 8.30 0.00 3.46
400 401 6.312399 TCTACGACAGTTAACCTACGAAAA 57.688 37.500 17.93 6.58 0.00 2.29
401 402 6.734137 TCTACGACAGTTAACCTACGAAAAA 58.266 36.000 17.93 4.87 0.00 1.94
416 417 4.785767 AAAAACCGGACGAGGGAC 57.214 55.556 9.46 0.00 35.02 4.46
418 419 1.747325 AAAAACCGGACGAGGGACGA 61.747 55.000 9.46 0.00 45.77 4.20
419 420 1.747325 AAAACCGGACGAGGGACGAA 61.747 55.000 9.46 0.00 45.77 3.85
420 421 1.747325 AAACCGGACGAGGGACGAAA 61.747 55.000 9.46 0.00 45.77 3.46
421 422 1.747325 AACCGGACGAGGGACGAAAA 61.747 55.000 9.46 0.00 45.77 2.29
422 423 1.005867 CCGGACGAGGGACGAAAAA 60.006 57.895 0.00 0.00 45.77 1.94
439 440 2.640316 AAAAACCTGGAAGCGAGACT 57.360 45.000 0.00 0.00 0.00 3.24
440 441 3.764237 AAAAACCTGGAAGCGAGACTA 57.236 42.857 0.00 0.00 0.00 2.59
441 442 2.745515 AAACCTGGAAGCGAGACTAC 57.254 50.000 0.00 0.00 0.00 2.73
442 443 0.896226 AACCTGGAAGCGAGACTACC 59.104 55.000 0.00 0.00 0.00 3.18
443 444 0.251653 ACCTGGAAGCGAGACTACCA 60.252 55.000 0.00 0.00 0.00 3.25
444 445 0.895530 CCTGGAAGCGAGACTACCAA 59.104 55.000 0.00 0.00 0.00 3.67
445 446 1.404315 CCTGGAAGCGAGACTACCAAC 60.404 57.143 0.00 0.00 0.00 3.77
446 447 1.546476 CTGGAAGCGAGACTACCAACT 59.454 52.381 0.00 0.00 0.00 3.16
447 448 1.272490 TGGAAGCGAGACTACCAACTG 59.728 52.381 0.00 0.00 0.00 3.16
448 449 1.351153 GAAGCGAGACTACCAACTGC 58.649 55.000 0.00 0.00 0.00 4.40
449 450 0.969894 AAGCGAGACTACCAACTGCT 59.030 50.000 0.00 0.00 0.00 4.24
450 451 1.835494 AGCGAGACTACCAACTGCTA 58.165 50.000 0.00 0.00 0.00 3.49
451 452 1.473278 AGCGAGACTACCAACTGCTAC 59.527 52.381 0.00 0.00 0.00 3.58
452 453 1.201647 GCGAGACTACCAACTGCTACA 59.798 52.381 0.00 0.00 0.00 2.74
453 454 2.159226 GCGAGACTACCAACTGCTACAT 60.159 50.000 0.00 0.00 0.00 2.29
454 455 3.676324 GCGAGACTACCAACTGCTACATT 60.676 47.826 0.00 0.00 0.00 2.71
455 456 4.439700 GCGAGACTACCAACTGCTACATTA 60.440 45.833 0.00 0.00 0.00 1.90
456 457 5.274718 CGAGACTACCAACTGCTACATTAG 58.725 45.833 0.00 0.00 0.00 1.73
457 458 5.066117 CGAGACTACCAACTGCTACATTAGA 59.934 44.000 0.00 0.00 0.00 2.10
458 459 6.404403 CGAGACTACCAACTGCTACATTAGAA 60.404 42.308 0.00 0.00 0.00 2.10
459 460 6.868622 AGACTACCAACTGCTACATTAGAAG 58.131 40.000 0.00 0.00 37.48 2.85
460 461 6.437793 AGACTACCAACTGCTACATTAGAAGT 59.562 38.462 0.00 0.00 46.80 3.01
461 462 7.614583 AGACTACCAACTGCTACATTAGAAGTA 59.385 37.037 0.00 0.00 44.01 2.24
462 463 7.773149 ACTACCAACTGCTACATTAGAAGTAG 58.227 38.462 0.00 0.00 44.01 2.57
463 464 6.852420 ACCAACTGCTACATTAGAAGTAGA 57.148 37.500 4.66 0.00 44.01 2.59
464 465 6.868622 ACCAACTGCTACATTAGAAGTAGAG 58.131 40.000 4.66 2.61 44.01 2.43
465 466 6.663953 ACCAACTGCTACATTAGAAGTAGAGA 59.336 38.462 4.66 0.00 44.01 3.10
466 467 7.343316 ACCAACTGCTACATTAGAAGTAGAGAT 59.657 37.037 4.66 0.00 44.01 2.75
467 468 8.200792 CCAACTGCTACATTAGAAGTAGAGATT 58.799 37.037 4.66 0.00 44.01 2.40
468 469 9.029243 CAACTGCTACATTAGAAGTAGAGATTG 57.971 37.037 4.66 1.96 44.01 2.67
469 470 8.526667 ACTGCTACATTAGAAGTAGAGATTGA 57.473 34.615 4.66 0.00 42.96 2.57
470 471 9.142014 ACTGCTACATTAGAAGTAGAGATTGAT 57.858 33.333 4.66 0.00 42.96 2.57
480 481 6.892456 AGAAGTAGAGATTGATACTGGTGACA 59.108 38.462 0.00 0.00 32.62 3.58
496 497 1.584380 GACAGGCGTACGAGGACAGT 61.584 60.000 21.65 8.35 0.00 3.55
555 556 4.559063 CGCCCATCCCTCCTGCTG 62.559 72.222 0.00 0.00 0.00 4.41
557 558 3.414193 CCCATCCCTCCTGCTGCA 61.414 66.667 0.88 0.88 0.00 4.41
563 564 2.752358 CCTCCTGCTGCACTTCCA 59.248 61.111 0.00 0.00 0.00 3.53
577 578 1.132495 ACTTCCACCTCCCACTAACCT 60.132 52.381 0.00 0.00 0.00 3.50
612 613 1.435577 GAAAACGACAGCCACCGTAT 58.564 50.000 0.00 0.00 38.13 3.06
924 927 2.103143 CCGTCGTAGGCAGCTCAG 59.897 66.667 0.00 0.00 0.00 3.35
1121 1124 4.016444 GGTGAGCCACTCCATCAATTTTA 58.984 43.478 5.48 0.00 34.40 1.52
1130 1133 8.392612 GCCACTCCATCAATTTTATCAATTTTG 58.607 33.333 0.00 0.00 0.00 2.44
1162 1165 2.746277 CGCCCTCCTTTCGGGTTG 60.746 66.667 0.00 0.00 43.92 3.77
1172 1175 3.315765 TTCGGGTTGACGAATTGCT 57.684 47.368 0.00 0.00 46.68 3.91
1178 1181 1.880027 GGTTGACGAATTGCTTGGTCT 59.120 47.619 0.00 0.00 39.88 3.85
1182 1185 2.677836 TGACGAATTGCTTGGTCTATGC 59.322 45.455 0.00 0.00 39.88 3.14
1216 1219 2.397597 CACATATTTTGGGGGAAGGGG 58.602 52.381 0.00 0.00 0.00 4.79
1217 1220 2.023501 CACATATTTTGGGGGAAGGGGA 60.024 50.000 0.00 0.00 0.00 4.81
1229 1236 1.153086 AAGGGGACATCTCGCATGC 60.153 57.895 7.91 7.91 0.00 4.06
1257 1264 4.952460 TGTACTTCTTAGCAAGTTTCCGT 58.048 39.130 0.00 0.00 37.75 4.69
1267 1274 3.810896 GTTTCCGTCCATGGGCGC 61.811 66.667 33.11 15.81 0.00 6.53
1279 1286 0.107410 ATGGGCGCGGACTGAATTTA 60.107 50.000 8.83 0.00 0.00 1.40
1289 1299 5.064198 CGCGGACTGAATTTATTCCTGTTAA 59.936 40.000 0.00 0.00 35.97 2.01
1315 1351 6.064717 AGCTTTGATGGATTATGTAGGTTCC 58.935 40.000 0.00 0.00 0.00 3.62
1320 1406 8.519799 TTGATGGATTATGTAGGTTCCTTTTC 57.480 34.615 0.00 0.00 0.00 2.29
1336 1423 4.480537 TCCTTTTCCCCTATGGCTGATAAA 59.519 41.667 0.00 0.00 0.00 1.40
1380 1467 6.381133 TCACAGAGATAGAATTAGCTTCCACA 59.619 38.462 0.00 0.00 34.11 4.17
1381 1468 6.478344 CACAGAGATAGAATTAGCTTCCACAC 59.522 42.308 0.00 0.00 34.11 3.82
1382 1469 6.155221 ACAGAGATAGAATTAGCTTCCACACA 59.845 38.462 0.00 0.00 34.11 3.72
1383 1470 7.044181 CAGAGATAGAATTAGCTTCCACACAA 58.956 38.462 0.00 0.00 34.11 3.33
1384 1471 7.224362 CAGAGATAGAATTAGCTTCCACACAAG 59.776 40.741 0.00 0.00 34.11 3.16
1385 1472 6.951971 AGATAGAATTAGCTTCCACACAAGT 58.048 36.000 0.00 0.00 34.11 3.16
1386 1473 8.079211 AGATAGAATTAGCTTCCACACAAGTA 57.921 34.615 0.00 0.00 34.11 2.24
1387 1474 8.200792 AGATAGAATTAGCTTCCACACAAGTAG 58.799 37.037 0.00 0.00 34.11 2.57
1388 1475 6.115448 AGAATTAGCTTCCACACAAGTAGT 57.885 37.500 0.00 0.00 34.11 2.73
1389 1476 7.241042 AGAATTAGCTTCCACACAAGTAGTA 57.759 36.000 0.00 0.00 34.11 1.82
1390 1477 7.097834 AGAATTAGCTTCCACACAAGTAGTAC 58.902 38.462 0.00 0.00 34.11 2.73
1391 1478 3.679824 AGCTTCCACACAAGTAGTACC 57.320 47.619 0.00 0.00 0.00 3.34
1392 1479 2.969950 AGCTTCCACACAAGTAGTACCA 59.030 45.455 0.00 0.00 0.00 3.25
1393 1480 3.006967 AGCTTCCACACAAGTAGTACCAG 59.993 47.826 0.00 0.00 0.00 4.00
1394 1481 3.244112 GCTTCCACACAAGTAGTACCAGT 60.244 47.826 0.00 0.00 0.00 4.00
1395 1482 4.021719 GCTTCCACACAAGTAGTACCAGTA 60.022 45.833 0.00 0.00 0.00 2.74
1396 1483 5.337330 GCTTCCACACAAGTAGTACCAGTAT 60.337 44.000 0.00 0.00 0.00 2.12
1397 1484 5.909621 TCCACACAAGTAGTACCAGTATC 57.090 43.478 0.00 0.00 0.00 2.24
1523 1614 6.546395 CATGTTATGGCTCTACAAGTTTCAC 58.454 40.000 0.00 0.00 0.00 3.18
1536 1627 5.113383 ACAAGTTTCACTATTCACGACACA 58.887 37.500 0.00 0.00 0.00 3.72
1542 1633 9.647797 AGTTTCACTATTCACGACACATATTTA 57.352 29.630 0.00 0.00 0.00 1.40
1567 1658 2.032528 AGACCACCACCGCACATG 59.967 61.111 0.00 0.00 0.00 3.21
1579 1670 1.728971 CCGCACATGTTTCTCTCTGTC 59.271 52.381 0.00 0.00 0.00 3.51
1599 1690 7.313646 TCTGTCTGAACCTTTCGTAAAGATAG 58.686 38.462 8.37 1.45 41.02 2.08
1660 1751 9.662947 GGGCTTTAACTGAACTAGTAGAATTTA 57.337 33.333 3.59 0.00 39.18 1.40
2149 2244 4.262420 GCTTTTTGGACAAAATGGGAGCTA 60.262 41.667 17.87 1.37 39.69 3.32
2369 2471 2.224305 GGATCCCACTCTGGTTAATCCG 60.224 54.545 0.00 0.00 39.52 4.18
2428 2530 8.612619 CAACAGTGTAATCAGAGTGTAAGTTTT 58.387 33.333 0.00 0.00 0.00 2.43
2620 2723 6.074249 CGTTCTAGCCTTCCGAGAATTATTTC 60.074 42.308 0.00 0.00 37.48 2.17
2628 2731 9.274206 GCCTTCCGAGAATTATTTCTATAGTTT 57.726 33.333 0.00 0.00 42.34 2.66
2759 2864 9.553418 TGATGACAAAATGTGTAATTATGTTCG 57.447 29.630 0.00 0.00 41.96 3.95
2791 2896 6.371548 TCTGTCCTGCAATAAAATGAGTACAC 59.628 38.462 0.00 0.00 0.00 2.90
2938 3043 5.109903 GTTTAGAGTGGCTACTACATGTGG 58.890 45.833 9.11 8.41 37.25 4.17
3336 3441 7.857734 ATATAATTGTCAATTCCACGTGTCA 57.142 32.000 15.65 0.00 32.38 3.58
3468 3574 3.009026 ACATGCATGCATTTGTACGAGA 58.991 40.909 30.32 0.00 33.90 4.04
3543 3649 6.905609 GGTGTTCTTGTAGTTTTCTTCTTTCG 59.094 38.462 0.00 0.00 0.00 3.46
3636 3742 4.678044 GCTTTAATGCTTTTCTGTAGGCCC 60.678 45.833 0.00 0.00 0.00 5.80
3661 3767 7.406553 CGCTGGTTCGAATGATTATTTTCTAA 58.593 34.615 0.00 0.00 0.00 2.10
3679 3785 2.086610 AACCCTGCTTGTTGGAATGT 57.913 45.000 0.00 0.00 0.00 2.71
3938 4046 7.121759 CACAGGGATCTATCAAACAACAATCTT 59.878 37.037 0.00 0.00 0.00 2.40
4008 4116 9.720769 CTATAAGGTACTCTTTCTGGTTGAAAA 57.279 33.333 2.53 0.00 40.50 2.29
4010 4118 7.898014 AAGGTACTCTTTCTGGTTGAAAATT 57.102 32.000 0.00 0.00 40.50 1.82
4011 4119 7.511959 AGGTACTCTTTCTGGTTGAAAATTC 57.488 36.000 0.00 0.00 43.25 2.17
4012 4120 7.060421 AGGTACTCTTTCTGGTTGAAAATTCA 58.940 34.615 0.00 0.00 43.25 2.57
4014 4122 6.396829 ACTCTTTCTGGTTGAAAATTCAGG 57.603 37.500 0.00 0.00 43.25 3.86
4015 4123 5.893824 ACTCTTTCTGGTTGAAAATTCAGGT 59.106 36.000 0.00 0.00 43.25 4.00
4038 4146 2.414994 ACTGCATCTTGTGAGGATGG 57.585 50.000 0.00 0.00 40.40 3.51
4042 4150 2.240414 TGCATCTTGTGAGGATGGTGAT 59.760 45.455 0.00 0.00 40.40 3.06
4047 4155 5.710513 TCTTGTGAGGATGGTGATTTTTG 57.289 39.130 0.00 0.00 0.00 2.44
4099 4207 1.074248 CTTTGTGGCCCGGGTACTT 59.926 57.895 24.63 0.00 0.00 2.24
4140 4248 0.960861 CTCCTTTTTCTCCACCGCCC 60.961 60.000 0.00 0.00 0.00 6.13
4143 4251 3.853698 TTTTTCTCCACCGCCCCCG 62.854 63.158 0.00 0.00 0.00 5.73
4164 4272 0.991355 TCAACCCTCCAACACCACCT 60.991 55.000 0.00 0.00 0.00 4.00
4165 4273 0.768622 CAACCCTCCAACACCACCTA 59.231 55.000 0.00 0.00 0.00 3.08
4168 4276 1.189524 CCCTCCAACACCACCTACGA 61.190 60.000 0.00 0.00 0.00 3.43
4172 4280 0.601841 CCAACACCACCTACGACACC 60.602 60.000 0.00 0.00 0.00 4.16
4208 4316 3.988976 ACTATGATTCTGTGGCACTGT 57.011 42.857 19.83 3.11 0.00 3.55
4257 4365 7.928307 TCCTTGAAACTCTCAAATTATCTGG 57.072 36.000 0.00 0.00 43.54 3.86
4281 4389 9.407380 TGGATGATAGTATTTAACATGTGCTTT 57.593 29.630 0.00 0.00 0.00 3.51
4321 4429 1.208776 CTAGGTGACCCTAAAACCGGG 59.791 57.143 6.32 0.00 42.86 5.73
4437 4545 3.874383 TTTCTTTGATGTCCCTGGTCA 57.126 42.857 0.00 0.00 0.00 4.02
4530 4638 6.513806 TGTCCTTGGTCATGTTATTCAATG 57.486 37.500 0.00 0.00 0.00 2.82
4532 4640 5.015515 TCCTTGGTCATGTTATTCAATGCA 58.984 37.500 0.00 0.00 0.00 3.96
4536 4644 7.201574 CCTTGGTCATGTTATTCAATGCATTTG 60.202 37.037 9.83 5.89 36.61 2.32
4720 4828 3.337834 TGGTACATTGGTGGCAGTG 57.662 52.632 0.00 0.00 0.00 3.66
4995 5103 5.404096 GCCTAGTTGTCTCTTTCTCTGTAC 58.596 45.833 0.00 0.00 0.00 2.90
5051 5159 0.318441 TCAAGTCGGGACAGCAAGAG 59.682 55.000 1.17 0.00 0.00 2.85
5101 5209 7.395190 ACTGTTTAATTGCTTCATCTGCATA 57.605 32.000 0.00 0.00 40.34 3.14
5216 5328 4.979197 CGACTCTGAGCTTCATTATGTACC 59.021 45.833 4.19 0.00 0.00 3.34
5249 5361 1.592400 CCAACTGACATGGGCTGCTG 61.592 60.000 0.00 0.00 34.15 4.41
5250 5362 0.892358 CAACTGACATGGGCTGCTGT 60.892 55.000 0.00 0.00 0.00 4.40
5251 5363 0.178981 AACTGACATGGGCTGCTGTT 60.179 50.000 0.00 0.00 0.00 3.16
5613 5748 4.256110 TCATTCATCGTGATGTCAAAGCT 58.744 39.130 9.51 0.00 39.72 3.74
5757 5892 1.177256 CCGAGTACCTATCCACCGGG 61.177 65.000 6.32 0.00 32.64 5.73
5832 5967 1.067295 TCACTGGACAGAGGGCATTT 58.933 50.000 6.29 0.00 0.00 2.32
5902 6037 6.202331 TGGGTAAGTTCTCCTCTATCATTGA 58.798 40.000 0.00 0.00 0.00 2.57
5903 6038 6.325028 TGGGTAAGTTCTCCTCTATCATTGAG 59.675 42.308 0.00 0.00 0.00 3.02
5904 6039 6.220201 GGTAAGTTCTCCTCTATCATTGAGC 58.780 44.000 0.00 0.00 0.00 4.26
5905 6040 6.041523 GGTAAGTTCTCCTCTATCATTGAGCT 59.958 42.308 0.00 0.00 0.00 4.09
5908 6051 7.854166 AGTTCTCCTCTATCATTGAGCTTAT 57.146 36.000 0.00 0.00 0.00 1.73
5911 6054 9.585099 GTTCTCCTCTATCATTGAGCTTATATG 57.415 37.037 0.00 0.00 0.00 1.78
5933 6076 0.392060 ATGAGCAGCGATGCAACTCA 60.392 50.000 29.24 22.43 43.21 3.41
5934 6077 0.392060 TGAGCAGCGATGCAACTCAT 60.392 50.000 29.24 5.28 37.66 2.90
5935 6078 1.134729 TGAGCAGCGATGCAACTCATA 60.135 47.619 29.24 2.60 37.66 2.15
5936 6079 1.526041 GAGCAGCGATGCAACTCATAG 59.474 52.381 29.24 0.00 35.05 2.23
5937 6080 0.585357 GCAGCGATGCAACTCATAGG 59.415 55.000 22.72 0.00 35.05 2.57
5976 6119 3.431415 TCTTAGCTGTCTGCCAGTTCTA 58.569 45.455 0.00 0.00 43.55 2.10
5991 6162 5.351740 GCCAGTTCTAGTTATTGGTTCAGTC 59.648 44.000 9.59 0.00 0.00 3.51
5992 6163 6.702329 CCAGTTCTAGTTATTGGTTCAGTCT 58.298 40.000 0.00 0.00 0.00 3.24
5993 6164 7.162082 CCAGTTCTAGTTATTGGTTCAGTCTT 58.838 38.462 0.00 0.00 0.00 3.01
5994 6165 7.332182 CCAGTTCTAGTTATTGGTTCAGTCTTC 59.668 40.741 0.00 0.00 0.00 2.87
5995 6166 7.872993 CAGTTCTAGTTATTGGTTCAGTCTTCA 59.127 37.037 0.00 0.00 0.00 3.02
5996 6167 8.091449 AGTTCTAGTTATTGGTTCAGTCTTCAG 58.909 37.037 0.00 0.00 0.00 3.02
5997 6168 7.540474 TCTAGTTATTGGTTCAGTCTTCAGT 57.460 36.000 0.00 0.00 0.00 3.41
6079 6255 4.224991 TGTGTGATGTGTCATCCATGAT 57.775 40.909 0.00 0.00 39.30 2.45
6080 6256 4.591929 TGTGTGATGTGTCATCCATGATT 58.408 39.130 0.00 0.00 39.30 2.57
6081 6257 4.396790 TGTGTGATGTGTCATCCATGATTG 59.603 41.667 0.00 0.00 39.30 2.67
6082 6258 4.637091 GTGTGATGTGTCATCCATGATTGA 59.363 41.667 0.00 0.00 39.30 2.57
6083 6259 4.879545 TGTGATGTGTCATCCATGATTGAG 59.120 41.667 0.00 0.00 39.30 3.02
6084 6260 5.121105 GTGATGTGTCATCCATGATTGAGA 58.879 41.667 0.00 0.00 39.30 3.27
6085 6261 5.007430 GTGATGTGTCATCCATGATTGAGAC 59.993 44.000 14.33 14.33 39.30 3.36
6494 6673 5.821204 AGAACAAAACAAAATCGTCTCCTG 58.179 37.500 0.00 0.00 0.00 3.86
6501 6680 3.056821 ACAAAATCGTCTCCTGATCGACA 60.057 43.478 0.00 0.00 36.46 4.35
6508 6687 0.820226 CTCCTGATCGACAAGCTCCA 59.180 55.000 0.00 0.00 0.00 3.86
6510 6689 0.179089 CCTGATCGACAAGCTCCAGG 60.179 60.000 0.00 0.00 35.75 4.45
6511 6690 0.809241 CTGATCGACAAGCTCCAGGC 60.809 60.000 0.00 0.00 42.19 4.85
6623 6807 0.952984 GTCAGCAGCAGTTCCCAGTC 60.953 60.000 0.00 0.00 0.00 3.51
6715 6932 1.007336 CACTACACTTCGTCCGTGCC 61.007 60.000 0.00 0.00 35.84 5.01
6731 6948 2.354821 CGTGCCAAGGCTAAATCCTTAC 59.645 50.000 12.96 0.00 44.24 2.34
6732 6949 2.688446 GTGCCAAGGCTAAATCCTTACC 59.312 50.000 12.96 0.00 44.24 2.85
6733 6950 2.307768 GCCAAGGCTAAATCCTTACCC 58.692 52.381 3.29 0.00 44.24 3.69
6734 6951 2.357777 GCCAAGGCTAAATCCTTACCCA 60.358 50.000 3.29 0.00 44.24 4.51
6735 6952 3.880117 GCCAAGGCTAAATCCTTACCCAA 60.880 47.826 3.29 0.00 44.24 4.12
6736 6953 4.349365 CCAAGGCTAAATCCTTACCCAAA 58.651 43.478 0.00 0.00 44.24 3.28
6737 6954 4.962362 CCAAGGCTAAATCCTTACCCAAAT 59.038 41.667 0.00 0.00 44.24 2.32
6738 6955 5.069119 CCAAGGCTAAATCCTTACCCAAATC 59.931 44.000 0.00 0.00 44.24 2.17
6741 6958 5.674958 AGGCTAAATCCTTACCCAAATCCTA 59.325 40.000 0.00 0.00 30.82 2.94
6753 6970 3.259123 CCCAAATCCTAAAAAGTGCAGCT 59.741 43.478 0.00 0.00 0.00 4.24
6812 7029 0.384974 GTCCGATCTGAGATCGCGAC 60.385 60.000 32.93 31.79 39.95 5.19
6867 7084 1.788229 CCAGGTGGGTTTCAGGTTTT 58.212 50.000 0.00 0.00 0.00 2.43
6869 7086 1.412343 CAGGTGGGTTTCAGGTTTTGG 59.588 52.381 0.00 0.00 0.00 3.28
6895 7112 2.962786 CCCGCAACGTTCGACACA 60.963 61.111 17.68 0.00 0.00 3.72
6896 7113 2.314647 CCCGCAACGTTCGACACAT 61.315 57.895 17.68 0.00 0.00 3.21
6919 7139 2.424523 CGACTAGTCTATCCCCACCCTT 60.425 54.545 20.34 0.00 0.00 3.95
6970 7190 2.124312 ACCGCCCTTCCCCTACTT 59.876 61.111 0.00 0.00 0.00 2.24
6972 7192 2.499685 CGCCCTTCCCCTACTTCG 59.500 66.667 0.00 0.00 0.00 3.79
6975 7195 1.689582 CCCTTCCCCTACTTCGGCT 60.690 63.158 0.00 0.00 0.00 5.52
6976 7196 1.687297 CCCTTCCCCTACTTCGGCTC 61.687 65.000 0.00 0.00 0.00 4.70
7009 7229 0.447801 CTCCCATTTCGAAACTGCCG 59.552 55.000 13.81 6.14 0.00 5.69
7022 7242 0.112412 ACTGCCGTTCCTCCCATTTT 59.888 50.000 0.00 0.00 0.00 1.82
7045 7266 4.151582 TCCCCCGCGACGAAATCC 62.152 66.667 8.23 0.00 0.00 3.01
7048 7269 4.807039 CCCGCGACGAAATCCGGT 62.807 66.667 8.23 0.00 43.93 5.28
7068 7289 3.500471 GGTGGTTCCTTCTCCAAATCCTT 60.500 47.826 0.00 0.00 35.38 3.36
7071 7292 3.010696 GGTTCCTTCTCCAAATCCTTCCT 59.989 47.826 0.00 0.00 0.00 3.36
7072 7293 4.265893 GTTCCTTCTCCAAATCCTTCCTC 58.734 47.826 0.00 0.00 0.00 3.71
7073 7294 2.846827 TCCTTCTCCAAATCCTTCCTCC 59.153 50.000 0.00 0.00 0.00 4.30
7084 7306 1.623542 CCTTCCTCCCCCGTCGATTT 61.624 60.000 0.00 0.00 0.00 2.17
7096 7318 2.096406 CGATTTGAGTGGTGCGCG 59.904 61.111 0.00 0.00 0.00 6.86
7115 7337 3.116531 CGTTTCCGTTCGAGGGGC 61.117 66.667 4.93 0.00 0.00 5.80
7116 7338 2.031465 GTTTCCGTTCGAGGGGCA 59.969 61.111 4.93 0.00 0.00 5.36
7124 7346 1.378514 TTCGAGGGGCAAGGCATTC 60.379 57.895 0.00 0.00 0.00 2.67
7173 7395 0.682852 TTCGTTGACGGGTTGGATCT 59.317 50.000 3.48 0.00 40.29 2.75
7185 7407 1.747355 GTTGGATCTACGGAGGAACGA 59.253 52.381 0.00 0.00 37.61 3.85
7193 7415 1.731969 CGGAGGAACGACAACCGAC 60.732 63.158 0.00 0.00 45.31 4.79
7194 7416 1.364901 GGAGGAACGACAACCGACA 59.635 57.895 0.00 0.00 41.76 4.35
7197 7419 2.654912 GGAACGACAACCGACAGCG 61.655 63.158 0.00 0.00 41.76 5.18
7243 7465 2.502492 CGCAGGGAGGACCGATGAT 61.502 63.158 0.00 0.00 46.96 2.45
7257 7479 1.533994 ATGATCCGGGGATGAGCGA 60.534 57.895 4.63 0.00 34.60 4.93
7271 7493 1.964223 TGAGCGAAGGATCTATGTCCC 59.036 52.381 0.00 0.00 39.17 4.46
7291 7513 0.393402 AAAACTCCGGTAATCCCCGC 60.393 55.000 0.00 0.00 46.71 6.13
7294 7516 4.485530 TCCGGTAATCCCCGCCCT 62.486 66.667 0.00 0.00 46.71 5.19
7299 7521 1.416480 GGTAATCCCCGCCCTAGCTT 61.416 60.000 0.00 0.00 36.60 3.74
7304 7535 2.514824 CCCGCCCTAGCTTTGCTC 60.515 66.667 0.00 0.00 40.44 4.26
7322 7553 2.693069 CTCCCCACATATGAATCTCGC 58.307 52.381 10.38 0.00 0.00 5.03
7325 7556 1.802960 CCCACATATGAATCTCGCTGC 59.197 52.381 10.38 0.00 0.00 5.25
7342 7573 2.203070 CGCATTTCCGCCCTAGCT 60.203 61.111 0.00 0.00 36.60 3.32
7343 7574 2.247437 CGCATTTCCGCCCTAGCTC 61.247 63.158 0.00 0.00 36.60 4.09
7344 7575 1.147153 GCATTTCCGCCCTAGCTCT 59.853 57.895 0.00 0.00 36.60 4.09
7345 7576 1.162800 GCATTTCCGCCCTAGCTCTG 61.163 60.000 0.00 0.00 36.60 3.35
7346 7577 1.147153 ATTTCCGCCCTAGCTCTGC 59.853 57.895 0.00 0.00 36.60 4.26
7347 7578 1.341156 ATTTCCGCCCTAGCTCTGCT 61.341 55.000 0.00 0.00 43.41 4.24
7354 7585 1.479368 CCCTAGCTCTGCTCCCCATC 61.479 65.000 0.00 0.00 40.44 3.51
7366 7597 1.898472 CTCCCCATCTATGCATCTCGT 59.102 52.381 0.19 0.00 0.00 4.18
7375 7606 6.971756 CCATCTATGCATCTCGTTGTAGATAG 59.028 42.308 0.19 0.00 34.40 2.08
7385 7616 3.704566 TCGTTGTAGATAGCCTTGGATGT 59.295 43.478 0.00 0.00 0.00 3.06
7394 7625 0.659957 GCCTTGGATGTGCTCGAATC 59.340 55.000 0.00 0.00 0.00 2.52
7448 7741 2.407340 CTAGGATAGCCTTGGACCCT 57.593 55.000 4.04 0.00 43.90 4.34
7449 7742 1.974236 CTAGGATAGCCTTGGACCCTG 59.026 57.143 4.04 0.00 43.90 4.45
7450 7743 0.695803 AGGATAGCCTTGGACCCTGG 60.696 60.000 0.00 0.00 43.90 4.45
7451 7744 0.694444 GGATAGCCTTGGACCCTGGA 60.694 60.000 0.00 0.00 0.00 3.86
7452 7745 0.470341 GATAGCCTTGGACCCTGGAC 59.530 60.000 0.00 0.00 0.00 4.02
7453 7746 0.253160 ATAGCCTTGGACCCTGGACA 60.253 55.000 0.00 0.00 0.00 4.02
7454 7747 1.198759 TAGCCTTGGACCCTGGACAC 61.199 60.000 0.00 0.00 0.00 3.67
7455 7748 2.347490 CCTTGGACCCTGGACACG 59.653 66.667 0.00 0.00 0.00 4.49
7456 7749 2.358737 CTTGGACCCTGGACACGC 60.359 66.667 0.00 0.00 0.00 5.34
7457 7750 2.847234 TTGGACCCTGGACACGCT 60.847 61.111 0.00 0.00 0.00 5.07
7458 7751 2.788191 CTTGGACCCTGGACACGCTC 62.788 65.000 0.00 0.00 0.00 5.03
7459 7752 4.436998 GGACCCTGGACACGCTCG 62.437 72.222 0.00 0.00 0.00 5.03
7460 7753 3.371063 GACCCTGGACACGCTCGA 61.371 66.667 0.00 0.00 0.00 4.04
7461 7754 2.680352 ACCCTGGACACGCTCGAT 60.680 61.111 0.00 0.00 0.00 3.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.338291 CATGATTGAATCCATTTATTTAGAGCG 57.662 33.333 2.26 0.00 0.00 5.03
10 11 8.812513 TTAGAGTCACATGATTGAATCCATTT 57.187 30.769 9.40 0.00 40.69 2.32
11 12 8.991783 ATTAGAGTCACATGATTGAATCCATT 57.008 30.769 9.40 0.00 40.69 3.16
12 13 8.991783 AATTAGAGTCACATGATTGAATCCAT 57.008 30.769 9.40 1.81 40.69 3.41
13 14 9.330063 GTAATTAGAGTCACATGATTGAATCCA 57.670 33.333 9.40 0.00 40.69 3.41
14 15 9.553064 AGTAATTAGAGTCACATGATTGAATCC 57.447 33.333 9.40 0.00 40.69 3.01
17 18 9.087424 CGAAGTAATTAGAGTCACATGATTGAA 57.913 33.333 0.00 0.00 0.00 2.69
18 19 7.706607 CCGAAGTAATTAGAGTCACATGATTGA 59.293 37.037 0.00 0.00 0.00 2.57
19 20 7.706607 TCCGAAGTAATTAGAGTCACATGATTG 59.293 37.037 0.00 0.00 0.00 2.67
20 21 7.782049 TCCGAAGTAATTAGAGTCACATGATT 58.218 34.615 0.00 0.00 0.00 2.57
21 22 7.348080 TCCGAAGTAATTAGAGTCACATGAT 57.652 36.000 0.00 0.00 0.00 2.45
22 23 6.769134 TCCGAAGTAATTAGAGTCACATGA 57.231 37.500 0.00 0.00 0.00 3.07
23 24 7.492669 ACAATCCGAAGTAATTAGAGTCACATG 59.507 37.037 0.00 0.00 0.00 3.21
24 25 7.556844 ACAATCCGAAGTAATTAGAGTCACAT 58.443 34.615 0.00 0.00 0.00 3.21
25 26 6.931838 ACAATCCGAAGTAATTAGAGTCACA 58.068 36.000 0.00 0.00 0.00 3.58
26 27 7.829378 AACAATCCGAAGTAATTAGAGTCAC 57.171 36.000 0.00 0.00 0.00 3.67
27 28 9.529325 CATAACAATCCGAAGTAATTAGAGTCA 57.471 33.333 0.00 0.00 0.00 3.41
28 29 9.530633 ACATAACAATCCGAAGTAATTAGAGTC 57.469 33.333 0.00 0.00 0.00 3.36
29 30 9.314321 CACATAACAATCCGAAGTAATTAGAGT 57.686 33.333 0.00 0.00 0.00 3.24
30 31 8.276325 GCACATAACAATCCGAAGTAATTAGAG 58.724 37.037 0.00 0.00 0.00 2.43
31 32 7.766738 TGCACATAACAATCCGAAGTAATTAGA 59.233 33.333 0.00 0.00 0.00 2.10
32 33 7.850982 GTGCACATAACAATCCGAAGTAATTAG 59.149 37.037 13.17 0.00 0.00 1.73
33 34 7.334671 TGTGCACATAACAATCCGAAGTAATTA 59.665 33.333 17.42 0.00 0.00 1.40
34 35 6.150307 TGTGCACATAACAATCCGAAGTAATT 59.850 34.615 17.42 0.00 0.00 1.40
35 36 5.645929 TGTGCACATAACAATCCGAAGTAAT 59.354 36.000 17.42 0.00 0.00 1.89
36 37 4.998033 TGTGCACATAACAATCCGAAGTAA 59.002 37.500 17.42 0.00 0.00 2.24
37 38 4.390603 GTGTGCACATAACAATCCGAAGTA 59.609 41.667 24.69 0.00 0.00 2.24
38 39 3.188460 GTGTGCACATAACAATCCGAAGT 59.812 43.478 24.69 0.00 0.00 3.01
39 40 3.436704 AGTGTGCACATAACAATCCGAAG 59.563 43.478 24.69 0.00 0.00 3.79
40 41 3.407698 AGTGTGCACATAACAATCCGAA 58.592 40.909 24.69 0.00 0.00 4.30
41 42 3.052455 AGTGTGCACATAACAATCCGA 57.948 42.857 24.69 0.00 0.00 4.55
42 43 4.727734 GCTTAGTGTGCACATAACAATCCG 60.728 45.833 24.69 10.05 0.00 4.18
43 44 4.662145 GCTTAGTGTGCACATAACAATCC 58.338 43.478 24.69 7.29 0.00 3.01
44 45 4.092821 TCGCTTAGTGTGCACATAACAATC 59.907 41.667 24.69 8.10 0.00 2.67
45 46 4.000325 TCGCTTAGTGTGCACATAACAAT 59.000 39.130 24.69 7.74 0.00 2.71
46 47 3.394719 TCGCTTAGTGTGCACATAACAA 58.605 40.909 24.69 13.07 0.00 2.83
47 48 2.993220 CTCGCTTAGTGTGCACATAACA 59.007 45.455 24.69 6.80 0.00 2.41
48 49 2.348666 CCTCGCTTAGTGTGCACATAAC 59.651 50.000 24.69 10.54 0.00 1.89
49 50 2.028476 ACCTCGCTTAGTGTGCACATAA 60.028 45.455 24.69 19.12 0.00 1.90
50 51 1.548719 ACCTCGCTTAGTGTGCACATA 59.451 47.619 24.69 13.24 0.00 2.29
51 52 0.321671 ACCTCGCTTAGTGTGCACAT 59.678 50.000 24.69 14.26 0.00 3.21
52 53 0.599991 CACCTCGCTTAGTGTGCACA 60.600 55.000 17.42 17.42 0.00 4.57
53 54 1.901650 GCACCTCGCTTAGTGTGCAC 61.902 60.000 10.75 10.75 44.86 4.57
54 55 1.667830 GCACCTCGCTTAGTGTGCA 60.668 57.895 16.98 0.00 44.86 4.57
55 56 1.630244 CTGCACCTCGCTTAGTGTGC 61.630 60.000 15.91 15.91 45.31 4.57
56 57 0.319900 ACTGCACCTCGCTTAGTGTG 60.320 55.000 0.00 0.00 43.06 3.82
57 58 0.393077 AACTGCACCTCGCTTAGTGT 59.607 50.000 0.00 0.00 43.06 3.55
58 59 2.263077 CTAACTGCACCTCGCTTAGTG 58.737 52.381 0.00 0.00 43.06 2.74
59 60 1.204941 CCTAACTGCACCTCGCTTAGT 59.795 52.381 0.00 0.00 43.06 2.24
60 61 1.476891 TCCTAACTGCACCTCGCTTAG 59.523 52.381 0.00 0.00 43.06 2.18
61 62 1.552578 TCCTAACTGCACCTCGCTTA 58.447 50.000 0.00 0.00 43.06 3.09
62 63 0.685097 TTCCTAACTGCACCTCGCTT 59.315 50.000 0.00 0.00 43.06 4.68
63 64 0.685097 TTTCCTAACTGCACCTCGCT 59.315 50.000 0.00 0.00 43.06 4.93
64 65 1.079503 CTTTCCTAACTGCACCTCGC 58.920 55.000 0.00 0.00 42.89 5.03
65 66 2.743636 TCTTTCCTAACTGCACCTCG 57.256 50.000 0.00 0.00 0.00 4.63
66 67 5.241728 ACATTTTCTTTCCTAACTGCACCTC 59.758 40.000 0.00 0.00 0.00 3.85
67 68 5.140454 ACATTTTCTTTCCTAACTGCACCT 58.860 37.500 0.00 0.00 0.00 4.00
68 69 5.453567 ACATTTTCTTTCCTAACTGCACC 57.546 39.130 0.00 0.00 0.00 5.01
69 70 7.770801 AAAACATTTTCTTTCCTAACTGCAC 57.229 32.000 0.00 0.00 0.00 4.57
87 88 9.683069 CACTCAAGCACTTTAATTAGAAAACAT 57.317 29.630 0.00 0.00 0.00 2.71
88 89 8.898761 TCACTCAAGCACTTTAATTAGAAAACA 58.101 29.630 0.00 0.00 0.00 2.83
89 90 9.899226 ATCACTCAAGCACTTTAATTAGAAAAC 57.101 29.630 0.00 0.00 0.00 2.43
96 97 8.860088 ACCTTAAATCACTCAAGCACTTTAATT 58.140 29.630 0.00 0.00 0.00 1.40
97 98 8.409358 ACCTTAAATCACTCAAGCACTTTAAT 57.591 30.769 0.00 0.00 0.00 1.40
98 99 7.817418 ACCTTAAATCACTCAAGCACTTTAA 57.183 32.000 0.00 0.00 0.00 1.52
99 100 8.911918 TTACCTTAAATCACTCAAGCACTTTA 57.088 30.769 0.00 0.00 0.00 1.85
100 101 7.040409 CCTTACCTTAAATCACTCAAGCACTTT 60.040 37.037 0.00 0.00 0.00 2.66
101 102 6.431234 CCTTACCTTAAATCACTCAAGCACTT 59.569 38.462 0.00 0.00 0.00 3.16
102 103 5.940470 CCTTACCTTAAATCACTCAAGCACT 59.060 40.000 0.00 0.00 0.00 4.40
103 104 5.705905 ACCTTACCTTAAATCACTCAAGCAC 59.294 40.000 0.00 0.00 0.00 4.40
104 105 5.876357 ACCTTACCTTAAATCACTCAAGCA 58.124 37.500 0.00 0.00 0.00 3.91
105 106 6.819397 AACCTTACCTTAAATCACTCAAGC 57.181 37.500 0.00 0.00 0.00 4.01
221 222 9.874205 CTTCCATTATTGCAAATTTCTTTAGGA 57.126 29.630 1.71 0.00 0.00 2.94
222 223 9.101655 CCTTCCATTATTGCAAATTTCTTTAGG 57.898 33.333 1.71 1.18 0.00 2.69
223 224 9.657419 ACCTTCCATTATTGCAAATTTCTTTAG 57.343 29.630 1.71 0.00 0.00 1.85
226 227 9.822185 GATACCTTCCATTATTGCAAATTTCTT 57.178 29.630 1.71 0.00 0.00 2.52
227 228 8.137437 CGATACCTTCCATTATTGCAAATTTCT 58.863 33.333 1.71 0.00 0.00 2.52
228 229 7.382218 CCGATACCTTCCATTATTGCAAATTTC 59.618 37.037 1.71 0.00 0.00 2.17
229 230 7.147742 ACCGATACCTTCCATTATTGCAAATTT 60.148 33.333 1.71 0.00 0.00 1.82
230 231 6.323739 ACCGATACCTTCCATTATTGCAAATT 59.676 34.615 1.71 0.00 0.00 1.82
231 232 5.833131 ACCGATACCTTCCATTATTGCAAAT 59.167 36.000 1.71 0.00 0.00 2.32
232 233 5.197451 ACCGATACCTTCCATTATTGCAAA 58.803 37.500 1.71 0.00 0.00 3.68
233 234 4.787551 ACCGATACCTTCCATTATTGCAA 58.212 39.130 0.00 0.00 0.00 4.08
234 235 4.431416 ACCGATACCTTCCATTATTGCA 57.569 40.909 0.00 0.00 0.00 4.08
235 236 4.819630 TCAACCGATACCTTCCATTATTGC 59.180 41.667 0.00 0.00 0.00 3.56
236 237 7.510549 AATCAACCGATACCTTCCATTATTG 57.489 36.000 0.00 0.00 0.00 1.90
237 238 7.014230 CCAAATCAACCGATACCTTCCATTATT 59.986 37.037 0.00 0.00 0.00 1.40
238 239 6.490040 CCAAATCAACCGATACCTTCCATTAT 59.510 38.462 0.00 0.00 0.00 1.28
239 240 5.825679 CCAAATCAACCGATACCTTCCATTA 59.174 40.000 0.00 0.00 0.00 1.90
240 241 4.644685 CCAAATCAACCGATACCTTCCATT 59.355 41.667 0.00 0.00 0.00 3.16
241 242 4.080015 TCCAAATCAACCGATACCTTCCAT 60.080 41.667 0.00 0.00 0.00 3.41
242 243 3.264706 TCCAAATCAACCGATACCTTCCA 59.735 43.478 0.00 0.00 0.00 3.53
243 244 3.881220 TCCAAATCAACCGATACCTTCC 58.119 45.455 0.00 0.00 0.00 3.46
244 245 6.766467 ACTTATCCAAATCAACCGATACCTTC 59.234 38.462 0.00 0.00 0.00 3.46
245 246 6.659824 ACTTATCCAAATCAACCGATACCTT 58.340 36.000 0.00 0.00 0.00 3.50
246 247 6.248569 ACTTATCCAAATCAACCGATACCT 57.751 37.500 0.00 0.00 0.00 3.08
247 248 6.937436 AACTTATCCAAATCAACCGATACC 57.063 37.500 0.00 0.00 0.00 2.73
248 249 8.658499 ACTAACTTATCCAAATCAACCGATAC 57.342 34.615 0.00 0.00 0.00 2.24
250 251 9.675464 TTTACTAACTTATCCAAATCAACCGAT 57.325 29.630 0.00 0.00 0.00 4.18
251 252 9.675464 ATTTACTAACTTATCCAAATCAACCGA 57.325 29.630 0.00 0.00 0.00 4.69
266 267 8.827677 GCATCACGGATCTAAATTTACTAACTT 58.172 33.333 0.00 0.00 0.00 2.66
267 268 7.169308 CGCATCACGGATCTAAATTTACTAACT 59.831 37.037 0.00 0.00 38.44 2.24
268 269 7.281484 CGCATCACGGATCTAAATTTACTAAC 58.719 38.462 0.00 0.00 38.44 2.34
269 270 7.402811 CGCATCACGGATCTAAATTTACTAA 57.597 36.000 0.00 0.00 38.44 2.24
271 272 5.907197 CGCATCACGGATCTAAATTTACT 57.093 39.130 0.00 0.00 38.44 2.24
286 287 1.725625 CCAAACGTGCACGCATCAC 60.726 57.895 37.35 0.00 44.43 3.06
287 288 1.440145 TTCCAAACGTGCACGCATCA 61.440 50.000 37.35 16.15 44.43 3.07
288 289 0.317436 TTTCCAAACGTGCACGCATC 60.317 50.000 37.35 0.00 44.43 3.91
289 290 0.317770 CTTTCCAAACGTGCACGCAT 60.318 50.000 37.35 24.48 44.43 4.73
290 291 1.063327 CTTTCCAAACGTGCACGCA 59.937 52.632 37.35 14.67 44.43 5.24
291 292 0.928451 GACTTTCCAAACGTGCACGC 60.928 55.000 37.35 14.42 44.43 5.34
292 293 0.316689 GGACTTTCCAAACGTGCACG 60.317 55.000 35.99 35.99 40.04 5.34
293 294 1.021968 AGGACTTTCCAAACGTGCAC 58.978 50.000 6.82 6.82 39.61 4.57
294 295 1.021202 CAGGACTTTCCAAACGTGCA 58.979 50.000 0.00 0.00 39.61 4.57
295 296 1.305201 TCAGGACTTTCCAAACGTGC 58.695 50.000 0.00 0.00 39.61 5.34
296 297 4.290155 CAAATCAGGACTTTCCAAACGTG 58.710 43.478 0.00 0.00 39.61 4.49
297 298 3.243401 GCAAATCAGGACTTTCCAAACGT 60.243 43.478 0.00 0.00 39.61 3.99
298 299 3.243367 TGCAAATCAGGACTTTCCAAACG 60.243 43.478 0.00 0.00 39.61 3.60
299 300 4.320608 TGCAAATCAGGACTTTCCAAAC 57.679 40.909 0.00 0.00 39.61 2.93
300 301 4.202243 CCTTGCAAATCAGGACTTTCCAAA 60.202 41.667 0.00 0.00 39.61 3.28
301 302 3.321682 CCTTGCAAATCAGGACTTTCCAA 59.678 43.478 0.00 0.00 39.61 3.53
302 303 2.892852 CCTTGCAAATCAGGACTTTCCA 59.107 45.455 0.00 0.00 39.61 3.53
303 304 3.157087 TCCTTGCAAATCAGGACTTTCC 58.843 45.455 0.00 0.00 36.58 3.13
304 305 4.853924 TTCCTTGCAAATCAGGACTTTC 57.146 40.909 4.28 0.00 0.00 2.62
305 306 4.895297 TCTTTCCTTGCAAATCAGGACTTT 59.105 37.500 4.28 0.00 0.00 2.66
306 307 4.473444 TCTTTCCTTGCAAATCAGGACTT 58.527 39.130 4.28 0.00 0.00 3.01
307 308 4.077822 CTCTTTCCTTGCAAATCAGGACT 58.922 43.478 4.28 0.00 0.00 3.85
308 309 3.366781 GCTCTTTCCTTGCAAATCAGGAC 60.367 47.826 4.28 0.00 0.00 3.85
309 310 2.821969 GCTCTTTCCTTGCAAATCAGGA 59.178 45.455 0.00 0.00 0.00 3.86
310 311 2.824341 AGCTCTTTCCTTGCAAATCAGG 59.176 45.455 0.00 0.00 0.00 3.86
311 312 3.504906 TCAGCTCTTTCCTTGCAAATCAG 59.495 43.478 0.00 0.00 0.00 2.90
312 313 3.489355 TCAGCTCTTTCCTTGCAAATCA 58.511 40.909 0.00 0.00 0.00 2.57
313 314 3.119566 CCTCAGCTCTTTCCTTGCAAATC 60.120 47.826 0.00 0.00 0.00 2.17
314 315 2.824341 CCTCAGCTCTTTCCTTGCAAAT 59.176 45.455 0.00 0.00 0.00 2.32
315 316 2.233271 CCTCAGCTCTTTCCTTGCAAA 58.767 47.619 0.00 0.00 0.00 3.68
316 317 1.546323 CCCTCAGCTCTTTCCTTGCAA 60.546 52.381 0.00 0.00 0.00 4.08
317 318 0.037303 CCCTCAGCTCTTTCCTTGCA 59.963 55.000 0.00 0.00 0.00 4.08
318 319 0.679321 CCCCTCAGCTCTTTCCTTGC 60.679 60.000 0.00 0.00 0.00 4.01
319 320 0.695347 ACCCCTCAGCTCTTTCCTTG 59.305 55.000 0.00 0.00 0.00 3.61
320 321 2.344093 TACCCCTCAGCTCTTTCCTT 57.656 50.000 0.00 0.00 0.00 3.36
321 322 2.344093 TTACCCCTCAGCTCTTTCCT 57.656 50.000 0.00 0.00 0.00 3.36
322 323 3.653835 ATTTACCCCTCAGCTCTTTCC 57.346 47.619 0.00 0.00 0.00 3.13
323 324 5.357314 GGTTTATTTACCCCTCAGCTCTTTC 59.643 44.000 0.00 0.00 31.71 2.62
324 325 5.222254 TGGTTTATTTACCCCTCAGCTCTTT 60.222 40.000 0.00 0.00 37.39 2.52
325 326 4.291249 TGGTTTATTTACCCCTCAGCTCTT 59.709 41.667 0.00 0.00 37.39 2.85
326 327 3.850173 TGGTTTATTTACCCCTCAGCTCT 59.150 43.478 0.00 0.00 37.39 4.09
327 328 4.200092 CTGGTTTATTTACCCCTCAGCTC 58.800 47.826 0.00 0.00 37.39 4.09
328 329 3.591977 ACTGGTTTATTTACCCCTCAGCT 59.408 43.478 0.00 0.00 37.39 4.24
329 330 3.694566 CACTGGTTTATTTACCCCTCAGC 59.305 47.826 0.00 0.00 37.39 4.26
330 331 5.174037 TCACTGGTTTATTTACCCCTCAG 57.826 43.478 0.00 0.00 37.39 3.35
331 332 5.586155 TTCACTGGTTTATTTACCCCTCA 57.414 39.130 0.00 0.00 37.39 3.86
332 333 8.584063 TTTATTCACTGGTTTATTTACCCCTC 57.416 34.615 0.00 0.00 37.39 4.30
333 334 8.959676 TTTTATTCACTGGTTTATTTACCCCT 57.040 30.769 0.00 0.00 37.39 4.79
372 373 7.370383 TCGTAGGTTAACTGTCGTAGATTTTT 58.630 34.615 5.42 0.00 40.67 1.94
373 374 6.913170 TCGTAGGTTAACTGTCGTAGATTTT 58.087 36.000 5.42 0.00 40.67 1.82
374 375 6.500684 TCGTAGGTTAACTGTCGTAGATTT 57.499 37.500 5.42 0.00 40.67 2.17
375 376 6.500684 TTCGTAGGTTAACTGTCGTAGATT 57.499 37.500 5.42 0.00 40.67 2.40
376 377 6.500684 TTTCGTAGGTTAACTGTCGTAGAT 57.499 37.500 5.42 0.00 40.67 1.98
377 378 5.940192 TTTCGTAGGTTAACTGTCGTAGA 57.060 39.130 5.42 0.00 32.54 2.59
378 379 6.991485 TTTTTCGTAGGTTAACTGTCGTAG 57.009 37.500 5.42 0.00 32.54 3.51
399 400 1.301165 CGTCCCTCGTCCGGTTTTT 60.301 57.895 0.00 0.00 34.52 1.94
400 401 1.747325 TTCGTCCCTCGTCCGGTTTT 61.747 55.000 0.00 0.00 40.80 2.43
401 402 1.747325 TTTCGTCCCTCGTCCGGTTT 61.747 55.000 0.00 0.00 40.80 3.27
402 403 1.747325 TTTTCGTCCCTCGTCCGGTT 61.747 55.000 0.00 0.00 40.80 4.44
403 404 1.747325 TTTTTCGTCCCTCGTCCGGT 61.747 55.000 0.00 0.00 40.80 5.28
404 405 1.005867 TTTTTCGTCCCTCGTCCGG 60.006 57.895 0.00 0.00 40.80 5.14
405 406 4.659480 TTTTTCGTCCCTCGTCCG 57.341 55.556 0.00 0.00 40.80 4.79
420 421 2.640316 AGTCTCGCTTCCAGGTTTTT 57.360 45.000 0.00 0.00 0.00 1.94
421 422 2.289506 GGTAGTCTCGCTTCCAGGTTTT 60.290 50.000 0.00 0.00 35.06 2.43
422 423 1.275573 GGTAGTCTCGCTTCCAGGTTT 59.724 52.381 0.00 0.00 35.06 3.27
423 424 0.896226 GGTAGTCTCGCTTCCAGGTT 59.104 55.000 0.00 0.00 35.06 3.50
424 425 0.251653 TGGTAGTCTCGCTTCCAGGT 60.252 55.000 0.00 0.00 39.34 4.00
425 426 0.895530 TTGGTAGTCTCGCTTCCAGG 59.104 55.000 0.00 0.00 43.94 4.45
426 427 1.546476 AGTTGGTAGTCTCGCTTCCAG 59.454 52.381 0.00 0.00 43.94 3.86
427 428 1.272490 CAGTTGGTAGTCTCGCTTCCA 59.728 52.381 0.00 0.00 41.97 3.53
428 429 1.997669 CAGTTGGTAGTCTCGCTTCC 58.002 55.000 0.00 0.00 35.47 3.46
429 430 1.067495 AGCAGTTGGTAGTCTCGCTTC 60.067 52.381 0.00 0.00 0.00 3.86
430 431 0.969894 AGCAGTTGGTAGTCTCGCTT 59.030 50.000 0.00 0.00 0.00 4.68
431 432 1.473278 GTAGCAGTTGGTAGTCTCGCT 59.527 52.381 0.00 0.00 0.00 4.93
432 433 1.201647 TGTAGCAGTTGGTAGTCTCGC 59.798 52.381 0.00 0.00 0.00 5.03
433 434 3.784701 ATGTAGCAGTTGGTAGTCTCG 57.215 47.619 0.00 0.00 0.00 4.04
434 435 6.452494 TCTAATGTAGCAGTTGGTAGTCTC 57.548 41.667 0.00 0.00 0.00 3.36
435 436 6.437793 ACTTCTAATGTAGCAGTTGGTAGTCT 59.562 38.462 0.00 0.00 27.57 3.24
436 437 6.631962 ACTTCTAATGTAGCAGTTGGTAGTC 58.368 40.000 0.00 0.00 27.57 2.59
437 438 6.607004 ACTTCTAATGTAGCAGTTGGTAGT 57.393 37.500 0.00 0.00 27.57 2.73
438 439 7.997482 TCTACTTCTAATGTAGCAGTTGGTAG 58.003 38.462 0.00 0.00 37.78 3.18
439 440 7.832685 TCTCTACTTCTAATGTAGCAGTTGGTA 59.167 37.037 0.00 0.00 37.78 3.25
440 441 6.663953 TCTCTACTTCTAATGTAGCAGTTGGT 59.336 38.462 0.00 0.00 37.78 3.67
441 442 7.101652 TCTCTACTTCTAATGTAGCAGTTGG 57.898 40.000 0.00 0.00 37.78 3.77
442 443 9.029243 CAATCTCTACTTCTAATGTAGCAGTTG 57.971 37.037 0.00 0.00 37.78 3.16
443 444 8.972127 TCAATCTCTACTTCTAATGTAGCAGTT 58.028 33.333 0.00 0.00 37.78 3.16
444 445 8.526667 TCAATCTCTACTTCTAATGTAGCAGT 57.473 34.615 0.00 0.00 37.78 4.40
450 451 9.427821 ACCAGTATCAATCTCTACTTCTAATGT 57.572 33.333 0.00 0.00 0.00 2.71
451 452 9.689976 CACCAGTATCAATCTCTACTTCTAATG 57.310 37.037 0.00 0.00 0.00 1.90
452 453 9.647918 TCACCAGTATCAATCTCTACTTCTAAT 57.352 33.333 0.00 0.00 0.00 1.73
453 454 8.904834 GTCACCAGTATCAATCTCTACTTCTAA 58.095 37.037 0.00 0.00 0.00 2.10
454 455 8.053355 TGTCACCAGTATCAATCTCTACTTCTA 58.947 37.037 0.00 0.00 0.00 2.10
455 456 6.892456 TGTCACCAGTATCAATCTCTACTTCT 59.108 38.462 0.00 0.00 0.00 2.85
456 457 7.101652 TGTCACCAGTATCAATCTCTACTTC 57.898 40.000 0.00 0.00 0.00 3.01
457 458 6.097554 CCTGTCACCAGTATCAATCTCTACTT 59.902 42.308 0.00 0.00 36.95 2.24
458 459 5.596361 CCTGTCACCAGTATCAATCTCTACT 59.404 44.000 0.00 0.00 36.95 2.57
459 460 5.737635 GCCTGTCACCAGTATCAATCTCTAC 60.738 48.000 0.00 0.00 36.95 2.59
460 461 4.342378 GCCTGTCACCAGTATCAATCTCTA 59.658 45.833 0.00 0.00 36.95 2.43
461 462 3.133721 GCCTGTCACCAGTATCAATCTCT 59.866 47.826 0.00 0.00 36.95 3.10
462 463 3.462021 GCCTGTCACCAGTATCAATCTC 58.538 50.000 0.00 0.00 36.95 2.75
463 464 2.159043 CGCCTGTCACCAGTATCAATCT 60.159 50.000 0.00 0.00 36.95 2.40
464 465 2.205074 CGCCTGTCACCAGTATCAATC 58.795 52.381 0.00 0.00 36.95 2.67
465 466 1.555075 ACGCCTGTCACCAGTATCAAT 59.445 47.619 0.00 0.00 36.95 2.57
466 467 0.973632 ACGCCTGTCACCAGTATCAA 59.026 50.000 0.00 0.00 36.95 2.57
467 468 1.475280 GTACGCCTGTCACCAGTATCA 59.525 52.381 0.00 0.00 36.95 2.15
468 469 1.533338 CGTACGCCTGTCACCAGTATC 60.533 57.143 0.52 0.00 36.95 2.24
469 470 0.454600 CGTACGCCTGTCACCAGTAT 59.545 55.000 0.52 0.00 36.95 2.12
470 471 0.606130 TCGTACGCCTGTCACCAGTA 60.606 55.000 11.24 0.00 36.95 2.74
471 472 1.863662 CTCGTACGCCTGTCACCAGT 61.864 60.000 11.24 0.00 36.95 4.00
480 481 1.584380 GACACTGTCCTCGTACGCCT 61.584 60.000 11.24 0.00 0.00 5.52
555 556 0.690762 TTAGTGGGAGGTGGAAGTGC 59.309 55.000 0.00 0.00 0.00 4.40
557 558 1.132495 AGGTTAGTGGGAGGTGGAAGT 60.132 52.381 0.00 0.00 0.00 3.01
563 564 0.546988 GGTGGAGGTTAGTGGGAGGT 60.547 60.000 0.00 0.00 0.00 3.85
612 613 1.549170 GTGAAGGAGAGCCGGTTTCTA 59.451 52.381 1.90 0.00 39.96 2.10
1046 1049 4.308458 CCACCGACAAGACCGCCA 62.308 66.667 0.00 0.00 0.00 5.69
1084 1087 1.741770 CACCCTCTGTGTTAGCGGC 60.742 63.158 0.00 0.00 40.26 6.53
1089 1092 0.685097 GTGGCTCACCCTCTGTGTTA 59.315 55.000 0.00 0.00 45.61 2.41
1121 1124 6.813152 CGGAAGCCAAATAACTCAAAATTGAT 59.187 34.615 0.00 0.00 36.46 2.57
1162 1165 2.285834 CGCATAGACCAAGCAATTCGTC 60.286 50.000 0.00 0.00 0.00 4.20
1172 1175 0.179137 CGAGCTCACGCATAGACCAA 60.179 55.000 15.40 0.00 39.10 3.67
1192 1195 3.364549 CTTCCCCCAAAATATGTGCTCA 58.635 45.455 0.00 0.00 0.00 4.26
1196 1199 2.023501 TCCCCTTCCCCCAAAATATGTG 60.024 50.000 0.00 0.00 0.00 3.21
1198 1201 2.023501 TGTCCCCTTCCCCCAAAATATG 60.024 50.000 0.00 0.00 0.00 1.78
1205 1208 1.307866 GAGATGTCCCCTTCCCCCA 60.308 63.158 0.00 0.00 0.00 4.96
1216 1219 1.297158 GCAACGCATGCGAGATGTC 60.297 57.895 43.72 26.55 46.87 3.06
1217 1220 2.787249 GCAACGCATGCGAGATGT 59.213 55.556 43.72 20.83 46.87 3.06
1267 1274 8.283291 GCTATTAACAGGAATAAATTCAGTCCG 58.717 37.037 5.15 0.00 37.74 4.79
1279 1286 8.773033 AATCCATCAAAGCTATTAACAGGAAT 57.227 30.769 0.00 0.00 0.00 3.01
1289 1299 7.885399 GGAACCTACATAATCCATCAAAGCTAT 59.115 37.037 0.00 0.00 32.08 2.97
1297 1333 6.490381 GGGAAAAGGAACCTACATAATCCATC 59.510 42.308 0.00 0.00 34.30 3.51
1315 1351 6.983906 AATTTATCAGCCATAGGGGAAAAG 57.016 37.500 0.00 0.00 40.01 2.27
1320 1406 4.482990 ACCAAATTTATCAGCCATAGGGG 58.517 43.478 0.00 0.00 40.85 4.79
1336 1423 4.832266 TGTGAATTTGCCAGTAGACCAAAT 59.168 37.500 0.00 0.00 39.95 2.32
1380 1467 5.480772 ACAAGCAGATACTGGTACTACTTGT 59.519 40.000 15.13 15.13 41.59 3.16
1381 1468 5.967088 ACAAGCAGATACTGGTACTACTTG 58.033 41.667 3.96 0.00 41.59 3.16
1382 1469 5.127356 GGACAAGCAGATACTGGTACTACTT 59.873 44.000 3.96 0.00 41.59 2.24
1383 1470 4.645588 GGACAAGCAGATACTGGTACTACT 59.354 45.833 3.96 0.00 41.59 2.57
1384 1471 4.202131 GGGACAAGCAGATACTGGTACTAC 60.202 50.000 3.96 0.00 41.59 2.73
1385 1472 3.958798 GGGACAAGCAGATACTGGTACTA 59.041 47.826 3.96 0.00 41.59 1.82
1386 1473 2.766828 GGGACAAGCAGATACTGGTACT 59.233 50.000 3.96 0.00 41.59 2.73
1387 1474 2.500098 TGGGACAAGCAGATACTGGTAC 59.500 50.000 3.96 0.00 41.59 3.34
1388 1475 2.827755 TGGGACAAGCAGATACTGGTA 58.172 47.619 3.96 0.00 41.59 3.25
1389 1476 1.656587 TGGGACAAGCAGATACTGGT 58.343 50.000 0.00 0.00 44.48 4.00
1536 1627 6.990349 CGGTGGTGGTCTCTACAAATAAATAT 59.010 38.462 0.00 0.00 0.00 1.28
1542 1633 1.338769 GCGGTGGTGGTCTCTACAAAT 60.339 52.381 0.00 0.00 0.00 2.32
1567 1658 4.446051 CGAAAGGTTCAGACAGAGAGAAAC 59.554 45.833 0.00 0.00 0.00 2.78
1579 1670 7.412020 GCAAGACTATCTTTACGAAAGGTTCAG 60.412 40.741 0.00 0.00 33.78 3.02
1631 1722 7.253905 TCTACTAGTTCAGTTAAAGCCCAAT 57.746 36.000 0.00 0.00 38.80 3.16
1831 1925 7.714377 AGCAAATACATTTTTGTTCATTGACCA 59.286 29.630 0.00 0.00 38.55 4.02
1880 1974 6.238981 GCAGTTACTCTAGTATAGGGGTCAAC 60.239 46.154 0.00 0.00 45.87 3.18
1884 1978 5.666474 AGCAGTTACTCTAGTATAGGGGT 57.334 43.478 0.00 0.00 45.87 4.95
2149 2244 8.469200 GCCACCACATTATGCATACAAATATAT 58.531 33.333 5.74 0.00 0.00 0.86
2433 2536 7.725251 AGCAAGTGTAAATTGGAGAAAAATCA 58.275 30.769 0.00 0.00 43.12 2.57
2791 2896 1.021202 TGTTCTGCAAACCCAAGTCG 58.979 50.000 8.60 0.00 0.00 4.18
2906 3011 5.830991 AGTAGCCACTCTAAACATCCTAGAG 59.169 44.000 5.52 5.52 45.34 2.43
2938 3043 6.877611 TCCAAAATCTGTAGGAGAACAAAC 57.122 37.500 0.00 0.00 33.12 2.93
3072 3177 4.261155 GCATACATAATGAGAGCGCCAAAA 60.261 41.667 2.29 0.00 37.86 2.44
3158 3263 3.007635 GAGTTCCAAAGGTATTGTCCCG 58.992 50.000 0.00 0.00 0.00 5.14
3336 3441 2.293399 GCGGTCTGAACCAGAAAAACAT 59.707 45.455 0.00 0.00 46.86 2.71
3468 3574 5.590976 AAGAGGACTTCTGGGAAGAAAAT 57.409 39.130 13.30 0.00 35.91 1.82
3543 3649 8.596781 AGATACCTAACTGGATATGGTCATAC 57.403 38.462 0.00 0.00 39.71 2.39
3636 3742 5.810525 AGAAAATAATCATTCGAACCAGCG 58.189 37.500 0.00 0.00 0.00 5.18
3661 3767 2.086610 AACATTCCAACAAGCAGGGT 57.913 45.000 0.00 0.00 0.00 4.34
4008 4116 4.940046 CACAAGATGCAGTAAGACCTGAAT 59.060 41.667 0.00 0.00 33.16 2.57
4010 4118 3.578282 TCACAAGATGCAGTAAGACCTGA 59.422 43.478 0.00 0.00 34.23 3.86
4011 4119 3.930336 TCACAAGATGCAGTAAGACCTG 58.070 45.455 0.00 0.00 35.49 4.00
4012 4120 3.055530 CCTCACAAGATGCAGTAAGACCT 60.056 47.826 0.00 0.00 0.00 3.85
4014 4122 4.193826 TCCTCACAAGATGCAGTAAGAC 57.806 45.455 0.00 0.00 0.00 3.01
4015 4123 4.383444 CCATCCTCACAAGATGCAGTAAGA 60.383 45.833 0.00 0.00 39.87 2.10
4140 4248 1.149627 TGTTGGAGGGTTGAACGGG 59.850 57.895 0.00 0.00 0.00 5.28
4143 4251 1.029681 GTGGTGTTGGAGGGTTGAAC 58.970 55.000 0.00 0.00 0.00 3.18
4149 4257 1.189524 TCGTAGGTGGTGTTGGAGGG 61.190 60.000 0.00 0.00 0.00 4.30
4164 4272 3.811083 ACAAAATTCACCTGGTGTCGTA 58.189 40.909 25.15 10.69 34.79 3.43
4165 4273 2.650322 ACAAAATTCACCTGGTGTCGT 58.350 42.857 25.15 10.56 34.79 4.34
4168 4276 7.504238 TCATAGTTAACAAAATTCACCTGGTGT 59.496 33.333 25.15 5.39 34.79 4.16
4208 4316 3.511146 GCCCATTTCAAGAAGAATCACCA 59.489 43.478 0.00 0.00 35.83 4.17
4263 4371 7.759489 TTCCAGAAAGCACATGTTAAATACT 57.241 32.000 0.00 0.00 0.00 2.12
4321 4429 0.037975 CAACACCTCCAGCAATTGCC 60.038 55.000 26.45 9.18 43.38 4.52
4506 4614 6.558009 CATTGAATAACATGACCAAGGACAG 58.442 40.000 0.00 0.00 0.00 3.51
4512 4620 7.160049 ACAAATGCATTGAATAACATGACCAA 58.840 30.769 13.82 0.00 41.85 3.67
4513 4621 6.699366 ACAAATGCATTGAATAACATGACCA 58.301 32.000 13.82 0.00 41.85 4.02
4530 4638 9.463443 AAGATAAACAAAAGTACAGACAAATGC 57.537 29.630 0.00 0.00 0.00 3.56
4536 4644 8.012241 CAGCTGAAGATAAACAAAAGTACAGAC 58.988 37.037 8.42 0.00 0.00 3.51
4714 4822 7.113544 CGTTCTTCTTTTAATCTTTTCACTGCC 59.886 37.037 0.00 0.00 0.00 4.85
4720 4828 9.808808 GGAGTACGTTCTTCTTTTAATCTTTTC 57.191 33.333 0.00 0.00 0.00 2.29
5022 5130 1.269448 TCCCGACTTGATTTTGCTTGC 59.731 47.619 0.00 0.00 0.00 4.01
5101 5209 3.831323 TCATGTCCCATGTGTCAAAGTT 58.169 40.909 4.30 0.00 0.00 2.66
5192 5304 3.452474 ACATAATGAAGCTCAGAGTCGC 58.548 45.455 0.00 0.00 0.00 5.19
5216 5328 3.803778 GTCAGTTGGATTTGCAAAAGTGG 59.196 43.478 17.19 2.88 0.00 4.00
5249 5361 5.689383 TCAGAATTTAGTGCAGTCCAAAC 57.311 39.130 0.00 0.00 0.00 2.93
5250 5362 5.415701 GGATCAGAATTTAGTGCAGTCCAAA 59.584 40.000 0.00 0.00 0.00 3.28
5251 5363 4.943705 GGATCAGAATTTAGTGCAGTCCAA 59.056 41.667 0.00 0.00 0.00 3.53
5613 5748 5.048504 GTCTTCATCCAAGAGAATGTTTGCA 60.049 40.000 0.00 0.00 42.13 4.08
5727 5862 2.958818 AGGTACTCGGGAGCAATATGA 58.041 47.619 0.00 0.00 0.00 2.15
5902 6037 3.006217 TCGCTGCTCATGACATATAAGCT 59.994 43.478 14.29 0.00 34.11 3.74
5903 6038 3.320626 TCGCTGCTCATGACATATAAGC 58.679 45.455 0.00 8.84 0.00 3.09
5904 6039 4.201695 GCATCGCTGCTCATGACATATAAG 60.202 45.833 3.51 0.00 45.32 1.73
5905 6040 3.681417 GCATCGCTGCTCATGACATATAA 59.319 43.478 3.51 0.00 45.32 0.98
5908 6051 1.505425 GCATCGCTGCTCATGACATA 58.495 50.000 3.51 0.00 45.32 2.29
5933 6076 3.216147 GCACGATGCAAACAAACCTAT 57.784 42.857 0.00 0.00 44.26 2.57
5934 6077 2.697431 GCACGATGCAAACAAACCTA 57.303 45.000 0.00 0.00 44.26 3.08
5935 6078 3.568093 GCACGATGCAAACAAACCT 57.432 47.368 0.00 0.00 44.26 3.50
5976 6119 5.930135 ACACTGAAGACTGAACCAATAACT 58.070 37.500 0.00 0.00 0.00 2.24
5991 6162 4.063998 TGCATGCTATAGGACACTGAAG 57.936 45.455 20.33 0.00 0.00 3.02
5992 6163 4.101430 TCATGCATGCTATAGGACACTGAA 59.899 41.667 22.25 0.00 0.00 3.02
5993 6164 3.642848 TCATGCATGCTATAGGACACTGA 59.357 43.478 22.25 0.00 0.00 3.41
5994 6165 3.999046 TCATGCATGCTATAGGACACTG 58.001 45.455 22.25 0.00 0.00 3.66
5995 6166 4.285260 TCATCATGCATGCTATAGGACACT 59.715 41.667 22.25 0.00 31.70 3.55
5996 6167 4.572909 TCATCATGCATGCTATAGGACAC 58.427 43.478 22.25 0.00 31.70 3.67
5997 6168 4.285260 ACTCATCATGCATGCTATAGGACA 59.715 41.667 22.25 1.33 31.70 4.02
6079 6255 2.317371 AGCCTCCTCTCAAGTCTCAA 57.683 50.000 0.00 0.00 0.00 3.02
6080 6256 2.948147 GCTAGCCTCCTCTCAAGTCTCA 60.948 54.545 2.29 0.00 0.00 3.27
6081 6257 1.681264 GCTAGCCTCCTCTCAAGTCTC 59.319 57.143 2.29 0.00 0.00 3.36
6082 6258 1.775385 GCTAGCCTCCTCTCAAGTCT 58.225 55.000 2.29 0.00 0.00 3.24
6083 6259 0.383949 CGCTAGCCTCCTCTCAAGTC 59.616 60.000 9.66 0.00 0.00 3.01
6084 6260 0.323908 ACGCTAGCCTCCTCTCAAGT 60.324 55.000 9.66 0.00 0.00 3.16
6085 6261 0.102120 CACGCTAGCCTCCTCTCAAG 59.898 60.000 9.66 0.00 0.00 3.02
6494 6673 0.809241 CTGCCTGGAGCTTGTCGATC 60.809 60.000 0.00 0.00 44.23 3.69
6510 6689 1.639298 ATTCTGAAACGAGGCGCTGC 61.639 55.000 7.64 0.00 0.00 5.25
6511 6690 0.798776 AATTCTGAAACGAGGCGCTG 59.201 50.000 7.64 0.00 0.00 5.18
6673 6857 5.346551 TGCACGTACAAGTACAATACATCAC 59.653 40.000 10.63 0.00 35.87 3.06
6731 6948 3.259123 AGCTGCACTTTTTAGGATTTGGG 59.741 43.478 1.02 0.00 0.00 4.12
6732 6949 4.240096 CAGCTGCACTTTTTAGGATTTGG 58.760 43.478 0.00 0.00 0.00 3.28
6733 6950 4.682860 CACAGCTGCACTTTTTAGGATTTG 59.317 41.667 15.27 0.00 0.00 2.32
6734 6951 4.797275 GCACAGCTGCACTTTTTAGGATTT 60.797 41.667 15.27 0.00 43.62 2.17
6735 6952 3.305608 GCACAGCTGCACTTTTTAGGATT 60.306 43.478 15.27 0.00 43.62 3.01
6736 6953 2.229784 GCACAGCTGCACTTTTTAGGAT 59.770 45.455 15.27 0.00 43.62 3.24
6737 6954 1.608590 GCACAGCTGCACTTTTTAGGA 59.391 47.619 15.27 0.00 43.62 2.94
6738 6955 1.610522 AGCACAGCTGCACTTTTTAGG 59.389 47.619 15.27 0.00 46.97 2.69
6753 6970 1.891919 GGGACGACAAAGCAGCACA 60.892 57.895 0.00 0.00 0.00 4.57
6788 7005 2.465097 GATCTCAGATCGGACGGCGG 62.465 65.000 13.24 0.00 0.00 6.13
6791 7008 1.081774 GCGATCTCAGATCGGACGG 60.082 63.158 32.88 10.22 41.42 4.79
6796 7013 2.072090 GCGTCGCGATCTCAGATCG 61.072 63.158 29.38 29.38 43.72 3.69
6888 7105 1.450025 AGACTAGTCGCATGTGTCGA 58.550 50.000 17.07 0.00 33.40 4.20
6895 7112 2.240279 GTGGGGATAGACTAGTCGCAT 58.760 52.381 17.07 13.97 34.09 4.73
6896 7113 1.688772 GTGGGGATAGACTAGTCGCA 58.311 55.000 17.07 9.73 34.09 5.10
6961 7181 0.395862 CTCTGAGCCGAAGTAGGGGA 60.396 60.000 0.00 0.00 0.00 4.81
6965 7185 1.202200 CGTTCCTCTGAGCCGAAGTAG 60.202 57.143 0.00 0.00 0.00 2.57
6970 7190 3.760035 GCCGTTCCTCTGAGCCGA 61.760 66.667 0.00 0.00 0.00 5.54
6972 7192 2.185608 GAGCCGTTCCTCTGAGCC 59.814 66.667 0.00 0.00 0.00 4.70
7009 7229 0.323451 AGGGCGAAAATGGGAGGAAC 60.323 55.000 0.00 0.00 0.00 3.62
7045 7266 2.084546 GATTTGGAGAAGGAACCACCG 58.915 52.381 0.00 0.00 44.74 4.94
7048 7269 3.245264 GGAAGGATTTGGAGAAGGAACCA 60.245 47.826 0.00 0.00 0.00 3.67
7068 7289 1.305465 TCAAATCGACGGGGGAGGA 60.305 57.895 0.00 0.00 0.00 3.71
7071 7292 1.594833 CACTCAAATCGACGGGGGA 59.405 57.895 0.00 0.00 0.00 4.81
7072 7293 1.449601 CCACTCAAATCGACGGGGG 60.450 63.158 0.00 0.00 0.00 5.40
7073 7294 1.019278 CACCACTCAAATCGACGGGG 61.019 60.000 0.00 0.00 0.00 5.73
7099 7321 1.574702 CTTGCCCCTCGAACGGAAAC 61.575 60.000 1.60 0.00 0.00 2.78
7104 7326 3.976701 ATGCCTTGCCCCTCGAACG 62.977 63.158 0.00 0.00 0.00 3.95
7129 7351 4.421479 AACCAGCGTCGCCGAGAG 62.421 66.667 14.86 0.66 35.63 3.20
7131 7353 4.717629 TCAACCAGCGTCGCCGAG 62.718 66.667 14.86 5.35 35.63 4.63
7146 7368 1.664649 CCGTCAACGAAGCAGCTCA 60.665 57.895 3.71 0.00 43.02 4.26
7147 7369 2.383527 CCCGTCAACGAAGCAGCTC 61.384 63.158 3.71 0.00 43.02 4.09
7148 7370 2.357517 CCCGTCAACGAAGCAGCT 60.358 61.111 3.71 0.00 43.02 4.24
7173 7395 0.888736 TCGGTTGTCGTTCCTCCGTA 60.889 55.000 0.00 0.00 41.58 4.02
7243 7465 2.946988 ATCCTTCGCTCATCCCCGGA 62.947 60.000 0.73 0.00 0.00 5.14
7248 7470 3.367910 GGACATAGATCCTTCGCTCATCC 60.368 52.174 0.00 0.00 35.68 3.51
7257 7479 4.384208 CGGAGTTTTGGGACATAGATCCTT 60.384 45.833 0.00 0.00 39.30 3.36
7290 7512 2.124109 GGGGAGCAAAGCTAGGGC 60.124 66.667 0.00 0.00 39.88 5.19
7291 7513 1.077429 GTGGGGAGCAAAGCTAGGG 60.077 63.158 0.00 0.00 39.88 3.53
7294 7516 2.777114 TCATATGTGGGGAGCAAAGCTA 59.223 45.455 1.90 0.00 39.88 3.32
7299 7521 3.494924 CGAGATTCATATGTGGGGAGCAA 60.495 47.826 1.90 0.00 0.00 3.91
7304 7535 2.420642 CAGCGAGATTCATATGTGGGG 58.579 52.381 1.90 0.00 0.00 4.96
7325 7556 2.203070 AGCTAGGGCGGAAATGCG 60.203 61.111 0.00 0.00 44.37 4.73
7335 7566 1.461075 ATGGGGAGCAGAGCTAGGG 60.461 63.158 0.00 0.00 39.88 3.53
7336 7567 0.471591 AGATGGGGAGCAGAGCTAGG 60.472 60.000 0.00 0.00 39.88 3.02
7337 7568 2.300956 TAGATGGGGAGCAGAGCTAG 57.699 55.000 0.00 0.00 39.88 3.42
7338 7569 2.533916 CATAGATGGGGAGCAGAGCTA 58.466 52.381 0.00 0.00 39.88 3.32
7339 7570 1.350071 CATAGATGGGGAGCAGAGCT 58.650 55.000 0.00 0.00 43.88 4.09
7340 7571 0.321475 GCATAGATGGGGAGCAGAGC 60.321 60.000 0.00 0.00 0.00 4.09
7341 7572 1.054231 TGCATAGATGGGGAGCAGAG 58.946 55.000 0.00 0.00 0.00 3.35
7342 7573 1.627329 GATGCATAGATGGGGAGCAGA 59.373 52.381 0.00 0.00 38.75 4.26
7343 7574 1.629353 AGATGCATAGATGGGGAGCAG 59.371 52.381 0.00 0.00 38.75 4.24
7344 7575 1.627329 GAGATGCATAGATGGGGAGCA 59.373 52.381 0.00 0.00 39.79 4.26
7345 7576 1.405256 CGAGATGCATAGATGGGGAGC 60.405 57.143 0.00 0.00 0.00 4.70
7346 7577 1.898472 ACGAGATGCATAGATGGGGAG 59.102 52.381 0.00 0.00 0.00 4.30
7347 7578 2.015456 ACGAGATGCATAGATGGGGA 57.985 50.000 0.00 0.00 0.00 4.81
7354 7585 5.098893 GGCTATCTACAACGAGATGCATAG 58.901 45.833 0.00 0.00 36.80 2.23
7366 7597 3.455910 AGCACATCCAAGGCTATCTACAA 59.544 43.478 0.00 0.00 35.82 2.41
7375 7606 0.659957 GATTCGAGCACATCCAAGGC 59.340 55.000 0.00 0.00 0.00 4.35
7394 7625 2.325082 CCTCGCAAACCCGAACCAG 61.325 63.158 0.00 0.00 36.72 4.00
7442 7735 4.436998 CGAGCGTGTCCAGGGTCC 62.437 72.222 12.04 0.00 39.65 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.