Multiple sequence alignment - TraesCS2B01G340400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G340400 chr2B 100.000 4665 0 0 1 4665 485897244 485892580 0.000000e+00 8615.0
1 TraesCS2B01G340400 chr2B 96.571 175 5 1 2923 3096 738060091 738059917 5.910000e-74 289.0
2 TraesCS2B01G340400 chr2B 98.160 163 3 0 2926 3088 26101921 26101759 7.640000e-73 285.0
3 TraesCS2B01G340400 chr2B 86.316 95 7 4 2270 2362 216462916 216462826 1.070000e-16 99.0
4 TraesCS2B01G340400 chr2B 97.872 47 1 0 2368 2414 216462854 216462808 1.080000e-11 82.4
5 TraesCS2B01G340400 chr2B 92.157 51 3 1 2368 2418 451818341 451818390 2.330000e-08 71.3
6 TraesCS2B01G340400 chr2D 92.926 1965 99 22 966 2925 412475151 412473222 0.000000e+00 2822.0
7 TraesCS2B01G340400 chr2D 93.952 1207 54 9 3088 4279 412473220 412472018 0.000000e+00 1807.0
8 TraesCS2B01G340400 chr2D 85.850 841 70 12 1 803 412501968 412501139 0.000000e+00 848.0
9 TraesCS2B01G340400 chr2D 95.652 115 2 2 804 916 412475263 412475150 1.030000e-41 182.0
10 TraesCS2B01G340400 chr2A 91.790 1486 81 23 804 2268 579701102 579699637 0.000000e+00 2030.0
11 TraesCS2B01G340400 chr2A 92.105 1178 69 12 3088 4247 579698948 579697777 0.000000e+00 1639.0
12 TraesCS2B01G340400 chr2A 94.344 389 15 3 2414 2801 579699611 579699229 1.450000e-164 590.0
13 TraesCS2B01G340400 chr2A 93.333 165 11 0 2924 3088 674496979 674496815 1.300000e-60 244.0
14 TraesCS2B01G340400 chr2A 84.946 93 8 4 2272 2362 170470497 170470409 6.430000e-14 89.8
15 TraesCS2B01G340400 chr2A 97.872 47 1 0 2368 2414 559118456 559118410 1.080000e-11 82.4
16 TraesCS2B01G340400 chr6D 83.547 547 45 22 1744 2273 122992713 122992195 1.970000e-128 470.0
17 TraesCS2B01G340400 chr6D 95.906 171 7 0 2925 3095 90890281 90890451 1.280000e-70 278.0
18 TraesCS2B01G340400 chr6D 95.906 171 7 0 2926 3096 266777641 266777471 1.280000e-70 278.0
19 TraesCS2B01G340400 chr6A 83.372 427 32 16 1744 2155 158242429 158242831 4.440000e-95 359.0
20 TraesCS2B01G340400 chr6A 80.635 315 57 3 164 478 409218387 409218077 1.680000e-59 241.0
21 TraesCS2B01G340400 chr6A 93.103 58 4 0 2368 2425 172114715 172114658 8.320000e-13 86.1
22 TraesCS2B01G340400 chr6B 82.629 426 35 16 1744 2155 216634545 216634145 1.610000e-89 340.0
23 TraesCS2B01G340400 chr6B 97.024 168 5 0 2926 3093 680728491 680728658 2.750000e-72 283.0
24 TraesCS2B01G340400 chr6B 92.982 57 4 0 2369 2425 231351283 231351227 2.990000e-12 84.2
25 TraesCS2B01G340400 chr4B 97.024 168 5 0 2923 3090 385461370 385461537 2.750000e-72 283.0
26 TraesCS2B01G340400 chr4B 96.386 166 6 0 2923 3088 192259703 192259868 1.650000e-69 274.0
27 TraesCS2B01G340400 chr4B 88.776 98 8 2 2266 2362 71586942 71586847 2.950000e-22 117.0
28 TraesCS2B01G340400 chr4B 97.959 49 1 0 2368 2416 71586875 71586827 8.320000e-13 86.1
29 TraesCS2B01G340400 chr4B 86.765 68 9 0 231 298 101261616 101261549 5.010000e-10 76.8
30 TraesCS2B01G340400 chr7B 97.561 164 4 0 2925 3088 371733144 371733307 9.880000e-72 281.0
31 TraesCS2B01G340400 chr7B 94.444 180 9 1 2926 3105 249675052 249674874 4.600000e-70 276.0
32 TraesCS2B01G340400 chr7B 87.137 241 13 7 1932 2158 589939073 589938837 1.670000e-64 257.0
33 TraesCS2B01G340400 chr7B 93.103 174 11 1 2916 3088 191180414 191180241 2.150000e-63 254.0
34 TraesCS2B01G340400 chr7B 92.135 178 11 3 2916 3092 82692631 82692456 1.000000e-61 248.0
35 TraesCS2B01G340400 chr7B 91.209 182 15 1 2910 3090 697802755 697802574 3.610000e-61 246.0
36 TraesCS2B01G340400 chr7B 91.908 173 13 1 2917 3088 230692469 230692297 1.680000e-59 241.0
37 TraesCS2B01G340400 chr7D 88.333 240 14 3 1927 2155 518776678 518776442 4.600000e-70 276.0
38 TraesCS2B01G340400 chr7D 89.524 105 9 1 2143 2247 518776423 518776321 1.050000e-26 132.0
39 TraesCS2B01G340400 chr7D 95.349 43 2 0 2372 2414 45933433 45933475 8.380000e-08 69.4
40 TraesCS2B01G340400 chr3D 95.706 163 7 0 2926 3088 569577328 569577166 3.580000e-66 263.0
41 TraesCS2B01G340400 chr3D 85.792 183 26 0 308 490 129019107 129018925 1.320000e-45 195.0
42 TraesCS2B01G340400 chr3D 79.263 217 43 2 258 474 12877265 12877479 2.910000e-32 150.0
43 TraesCS2B01G340400 chr3D 97.826 46 1 0 2369 2414 473457432 473457477 3.870000e-11 80.5
44 TraesCS2B01G340400 chr5B 92.308 182 13 1 2910 3091 501472378 501472198 1.670000e-64 257.0
45 TraesCS2B01G340400 chr5B 92.090 177 12 2 2914 3089 182470943 182471118 1.000000e-61 248.0
46 TraesCS2B01G340400 chr3B 90.957 188 11 4 2908 3092 169691974 169691790 1.000000e-61 248.0
47 TraesCS2B01G340400 chr3B 77.559 254 53 4 222 474 18485526 18485776 2.910000e-32 150.0
48 TraesCS2B01G340400 chr3B 87.234 94 9 2 2270 2362 487049186 487049277 2.300000e-18 104.0
49 TraesCS2B01G340400 chr4A 77.689 251 51 5 172 420 642864265 642864018 1.050000e-31 148.0
50 TraesCS2B01G340400 chr1A 96.000 50 2 0 2368 2417 106228121 106228072 1.080000e-11 82.4
51 TraesCS2B01G340400 chr5D 92.308 39 3 0 328 366 379225321 379225359 6.520000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G340400 chr2B 485892580 485897244 4664 True 8615.000000 8615 100.000000 1 4665 1 chr2B.!!$R2 4664
1 TraesCS2B01G340400 chr2D 412472018 412475263 3245 True 1603.666667 2822 94.176667 804 4279 3 chr2D.!!$R2 3475
2 TraesCS2B01G340400 chr2D 412501139 412501968 829 True 848.000000 848 85.850000 1 803 1 chr2D.!!$R1 802
3 TraesCS2B01G340400 chr2A 579697777 579701102 3325 True 1419.666667 2030 92.746333 804 4247 3 chr2A.!!$R4 3443
4 TraesCS2B01G340400 chr6D 122992195 122992713 518 True 470.000000 470 83.547000 1744 2273 1 chr6D.!!$R1 529

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
553 568 0.309302 CGAGGATGCTCGGACTACTG 59.691 60.000 27.02 0.0 42.51 2.74 F
634 653 1.029681 AACTTGAAACACCCGCCTTC 58.970 50.000 0.00 0.0 0.00 3.46 F
2346 2415 1.001268 CAGTGCGCTAGATACATCCGT 60.001 52.381 9.73 0.0 0.00 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1572 1614 0.549902 TCCTCCCTTCCTTCATGGCA 60.550 55.0 0.0 0.0 35.26 4.92 R
2382 2451 0.921347 CCGGAATTAGTTGACGCTCG 59.079 55.0 0.0 0.0 0.00 5.03 R
4340 4614 0.036577 CAACTCCACTCCCAGAGCTG 60.037 60.0 0.0 0.0 33.18 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.100631 CGCTCCATTTCGCCGACTT 61.101 57.895 0.00 0.00 0.00 3.01
27 28 2.014128 CCATTTCGCCGACTTGGTATT 58.986 47.619 6.38 0.00 41.21 1.89
34 35 1.656652 CCGACTTGGTATTGCCTCAG 58.343 55.000 0.00 0.00 38.35 3.35
40 41 3.821033 ACTTGGTATTGCCTCAGTTTGTC 59.179 43.478 0.00 0.00 38.35 3.18
42 43 2.107378 TGGTATTGCCTCAGTTTGTCCA 59.893 45.455 0.00 0.00 38.35 4.02
46 47 0.836606 TGCCTCAGTTTGTCCAGTCA 59.163 50.000 0.00 0.00 0.00 3.41
51 52 3.393800 CTCAGTTTGTCCAGTCACGAAT 58.606 45.455 0.00 0.00 0.00 3.34
57 58 4.801330 TTGTCCAGTCACGAATACTGAT 57.199 40.909 14.96 0.00 45.89 2.90
58 59 4.110036 TGTCCAGTCACGAATACTGATG 57.890 45.455 14.96 3.53 45.89 3.07
90 91 0.323908 AGTGCCCGCTCTCTACTCTT 60.324 55.000 0.00 0.00 0.00 2.85
108 109 2.434336 TCTTCCATATGTCTCAACCGGG 59.566 50.000 6.32 0.00 0.00 5.73
109 110 0.468226 TCCATATGTCTCAACCGGGC 59.532 55.000 6.32 0.00 0.00 6.13
110 111 0.880278 CCATATGTCTCAACCGGGCG 60.880 60.000 6.32 0.00 0.00 6.13
119 120 4.353437 AACCGGGCGAGACGACAC 62.353 66.667 6.32 0.00 36.10 3.67
121 122 4.778415 CCGGGCGAGACGACACAG 62.778 72.222 0.00 0.00 36.10 3.66
122 123 3.733960 CGGGCGAGACGACACAGA 61.734 66.667 0.00 0.00 36.10 3.41
125 136 1.442857 GGCGAGACGACACAGACAG 60.443 63.158 0.00 0.00 33.63 3.51
151 162 5.757886 AGTTGTTAAACATGATCCACAACG 58.242 37.500 19.96 0.00 45.58 4.10
161 172 1.553690 ATCCACAACGGGGACAGAGG 61.554 60.000 0.00 0.00 37.23 3.69
182 193 2.680352 AGAAGCGAGAAGGGGCGA 60.680 61.111 0.00 0.00 0.00 5.54
184 195 4.436998 AAGCGAGAAGGGGCGACG 62.437 66.667 0.00 0.00 0.00 5.12
196 207 2.434185 GCGACGGGCAAGATGACA 60.434 61.111 0.00 0.00 42.87 3.58
203 214 0.326264 GGGCAAGATGACAGTGAGGT 59.674 55.000 0.00 0.00 0.00 3.85
204 215 1.271597 GGGCAAGATGACAGTGAGGTT 60.272 52.381 0.00 0.00 0.00 3.50
205 216 2.079925 GGCAAGATGACAGTGAGGTTC 58.920 52.381 0.00 0.00 0.00 3.62
206 217 1.728971 GCAAGATGACAGTGAGGTTCG 59.271 52.381 0.00 0.00 0.00 3.95
207 218 2.610479 GCAAGATGACAGTGAGGTTCGA 60.610 50.000 0.00 0.00 0.00 3.71
208 219 3.249091 CAAGATGACAGTGAGGTTCGAG 58.751 50.000 0.00 0.00 0.00 4.04
209 220 1.821753 AGATGACAGTGAGGTTCGAGG 59.178 52.381 0.00 0.00 0.00 4.63
210 221 0.898320 ATGACAGTGAGGTTCGAGGG 59.102 55.000 0.00 0.00 0.00 4.30
211 222 0.469331 TGACAGTGAGGTTCGAGGGT 60.469 55.000 0.00 0.00 0.00 4.34
273 284 2.879026 ACGTGAAGAAGGAAAAGAAGGC 59.121 45.455 0.00 0.00 0.00 4.35
275 286 3.139077 GTGAAGAAGGAAAAGAAGGCGA 58.861 45.455 0.00 0.00 0.00 5.54
286 297 5.434352 AAAAGAAGGCGAAGAGGTTTAAC 57.566 39.130 0.00 0.00 0.00 2.01
287 298 3.764237 AGAAGGCGAAGAGGTTTAACA 57.236 42.857 0.00 0.00 0.00 2.41
289 300 4.254492 AGAAGGCGAAGAGGTTTAACATC 58.746 43.478 1.13 1.13 0.00 3.06
307 318 3.266772 ACATCTTGATGGAGGCTACCAAA 59.733 43.478 14.18 1.36 43.47 3.28
318 329 4.116238 GAGGCTACCAAAGAAGAAGATCG 58.884 47.826 0.00 0.00 0.00 3.69
325 336 4.040461 ACCAAAGAAGAAGATCGACCTCAA 59.960 41.667 0.00 0.00 0.00 3.02
336 347 7.340743 AGAAGATCGACCTCAAAGAGAATAAGA 59.659 37.037 0.00 0.00 0.00 2.10
339 350 4.770531 TCGACCTCAAAGAGAATAAGACCA 59.229 41.667 0.00 0.00 0.00 4.02
365 376 1.480545 GAAGAGAGGAGGGTTGAGCTC 59.519 57.143 6.82 6.82 0.00 4.09
380 391 4.880537 CTCGCGGCCGCTTCAGAT 62.881 66.667 43.60 0.00 39.32 2.90
397 408 6.749118 GCTTCAGATGATACCAAAATGTTGAC 59.251 38.462 0.00 0.00 36.83 3.18
399 410 6.244654 TCAGATGATACCAAAATGTTGACCA 58.755 36.000 0.00 0.00 36.83 4.02
400 411 6.891361 TCAGATGATACCAAAATGTTGACCAT 59.109 34.615 0.00 0.00 36.83 3.55
409 420 7.024499 CCAAAATGTTGACCATGTGGATGGA 62.024 44.000 5.96 0.00 43.55 3.41
431 442 2.203056 TTGGATCCTGATGCGGCG 60.203 61.111 14.23 0.51 31.21 6.46
443 454 3.341043 GCGGCGATGATCATGCGT 61.341 61.111 14.30 0.00 0.00 5.24
475 486 4.168760 GTCAATATGTTGAAGCACTTGGC 58.831 43.478 6.45 0.00 45.38 4.52
492 503 2.825982 CGGTCAAGGTGGTGGTGA 59.174 61.111 0.00 0.00 0.00 4.02
500 511 1.004918 GGTGGTGGTGACCGAGAAG 60.005 63.158 0.00 0.00 46.62 2.85
518 529 0.991355 AGGGGGCGGATGGTGATTAA 60.991 55.000 0.00 0.00 0.00 1.40
529 540 3.211803 TGGTGATTAAGTGACGACGAG 57.788 47.619 0.00 0.00 0.00 4.18
530 541 2.555325 TGGTGATTAAGTGACGACGAGT 59.445 45.455 0.00 0.00 0.00 4.18
549 564 2.441164 AGCGAGGATGCTCGGACT 60.441 61.111 33.35 21.80 42.95 3.85
552 567 1.448922 GCGAGGATGCTCGGACTACT 61.449 60.000 33.35 0.00 45.88 2.57
553 568 0.309302 CGAGGATGCTCGGACTACTG 59.691 60.000 27.02 0.00 42.51 2.74
630 649 3.771798 TGTTAAAACTTGAAACACCCGC 58.228 40.909 0.00 0.00 0.00 6.13
634 653 1.029681 AACTTGAAACACCCGCCTTC 58.970 50.000 0.00 0.00 0.00 3.46
647 666 1.247567 CGCCTTCTTTGGGTTGTGAT 58.752 50.000 0.00 0.00 0.00 3.06
650 669 1.812571 CCTTCTTTGGGTTGTGATCGG 59.187 52.381 0.00 0.00 0.00 4.18
662 681 4.035208 GGTTGTGATCGGGACAATATGAAC 59.965 45.833 0.94 0.00 35.81 3.18
665 684 5.436175 TGTGATCGGGACAATATGAACATT 58.564 37.500 0.00 0.00 0.00 2.71
669 688 3.376859 TCGGGACAATATGAACATTGCAC 59.623 43.478 0.00 0.00 39.13 4.57
677 696 8.393395 ACAATATGAACATTGCACGTTAATTC 57.607 30.769 3.84 0.00 39.13 2.17
680 699 5.431420 TGAACATTGCACGTTAATTCACT 57.569 34.783 0.78 0.00 0.00 3.41
681 700 5.448438 TGAACATTGCACGTTAATTCACTC 58.552 37.500 0.78 0.00 0.00 3.51
682 701 5.008118 TGAACATTGCACGTTAATTCACTCA 59.992 36.000 0.78 0.00 0.00 3.41
710 729 7.846644 TGCTATGCATTTAAAAGGAAATTGG 57.153 32.000 3.54 0.00 31.71 3.16
752 791 5.023533 TGACTGGCTCTTGTAATGGTATC 57.976 43.478 0.00 0.00 0.00 2.24
761 800 3.452755 TGTAATGGTATCTGCGGACTG 57.547 47.619 0.00 0.00 0.00 3.51
764 803 3.393089 AATGGTATCTGCGGACTGATC 57.607 47.619 0.00 0.00 36.11 2.92
778 817 4.499865 CGGACTGATCTGACGGACAAATAT 60.500 45.833 6.60 0.00 32.26 1.28
826 865 2.099592 ACGTCGTTGATAAATAGCCGGA 59.900 45.455 5.05 0.00 0.00 5.14
901 942 2.681778 AGGTCACGCCTCCCAGAG 60.682 66.667 0.00 0.00 46.96 3.35
915 956 3.428532 TCCCAGAGTCCAACTACAGTAC 58.571 50.000 0.00 0.00 0.00 2.73
918 959 4.398673 CCCAGAGTCCAACTACAGTACTAC 59.601 50.000 0.00 0.00 0.00 2.73
921 962 6.539464 CCAGAGTCCAACTACAGTACTACTAG 59.461 46.154 0.00 0.01 0.00 2.57
923 964 8.256605 CAGAGTCCAACTACAGTACTACTAGTA 58.743 40.741 11.17 1.89 0.00 1.82
924 965 8.477256 AGAGTCCAACTACAGTACTACTAGTAG 58.523 40.741 25.30 25.30 36.65 2.57
925 966 7.047271 AGTCCAACTACAGTACTACTAGTAGC 58.953 42.308 26.54 13.42 35.34 3.58
926 967 6.259829 GTCCAACTACAGTACTACTAGTAGCC 59.740 46.154 26.54 18.10 35.34 3.93
927 968 6.070021 TCCAACTACAGTACTACTAGTAGCCA 60.070 42.308 26.54 14.02 35.34 4.75
928 969 6.600822 CCAACTACAGTACTACTAGTAGCCAA 59.399 42.308 26.54 12.00 35.34 4.52
929 970 7.121759 CCAACTACAGTACTACTAGTAGCCAAA 59.878 40.741 26.54 9.70 35.34 3.28
930 971 7.862512 ACTACAGTACTACTAGTAGCCAAAG 57.137 40.000 26.54 18.34 35.34 2.77
931 972 5.579564 ACAGTACTACTAGTAGCCAAAGC 57.420 43.478 26.54 12.10 36.66 3.51
1028 1069 3.430497 CGGAGGGGAGGGAGAGGA 61.430 72.222 0.00 0.00 0.00 3.71
1341 1382 1.871676 GAGTCGTTCCACCAGGTTTTC 59.128 52.381 0.00 0.00 35.89 2.29
1430 1471 2.165437 TCTGTTTGTTTGGCACCTTGAC 59.835 45.455 0.00 0.00 0.00 3.18
1461 1502 6.711194 CGATGTCCTCTAAGGTAGACAAGATA 59.289 42.308 0.00 0.00 42.14 1.98
1477 1518 7.230027 AGACAAGATATTGGATTCTGGATTCC 58.770 38.462 4.88 0.00 0.00 3.01
1478 1519 6.000219 ACAAGATATTGGATTCTGGATTCCG 59.000 40.000 4.88 0.00 34.46 4.30
1526 1568 8.038944 GGGTTTTATAGTTGGATATATCTGCGA 58.961 37.037 12.42 0.98 0.00 5.10
1542 1584 3.134458 CTGCGACTGTCCTCTTTCTTTT 58.866 45.455 1.55 0.00 0.00 2.27
1572 1614 1.628846 AGAACACCATAAGGCCGTCTT 59.371 47.619 0.00 0.00 39.06 3.01
1663 1712 6.183360 TGCAGAAGACTTGAAGAAGTAGACTT 60.183 38.462 0.00 0.00 42.80 3.01
1700 1749 5.157781 GCTGTCAGTATCTAGCTTATTCGG 58.842 45.833 0.93 0.00 33.53 4.30
1705 1754 5.535030 TCAGTATCTAGCTTATTCGGCTGAA 59.465 40.000 11.11 11.11 40.52 3.02
1738 1787 7.536281 CGAATCACATTGGCAATCATATTACAG 59.464 37.037 10.36 0.00 0.00 2.74
1828 1878 8.585018 CCCCTAATTTTAAAACATATAGCAGGG 58.415 37.037 1.97 9.54 0.00 4.45
1883 1933 1.882623 GGGCAGTGGTCTTTCAAAGAG 59.117 52.381 0.00 0.00 38.41 2.85
1887 1937 5.488341 GGCAGTGGTCTTTCAAAGAGTATA 58.512 41.667 0.00 0.00 38.41 1.47
1889 1939 6.037610 GGCAGTGGTCTTTCAAAGAGTATATG 59.962 42.308 0.00 0.00 38.41 1.78
1900 1950 6.406370 TCAAAGAGTATATGTTGTCCCAGTG 58.594 40.000 0.00 0.00 0.00 3.66
2043 2107 9.956720 CATCTTTCATTAATCCTGTGATAAACC 57.043 33.333 0.00 0.00 0.00 3.27
2193 2262 8.317679 ACTTCATCCTATATGAACTATTGAGCC 58.682 37.037 0.00 0.00 34.66 4.70
2278 2347 8.770828 TGTCTCTTTTCAAAAATAGTACTTCCG 58.229 33.333 0.00 0.00 0.00 4.30
2305 2374 3.374058 CCGGAATTAGTTGACGCTCAAAT 59.626 43.478 0.00 6.10 38.22 2.32
2313 2382 5.779806 AGTTGACGCTCAAATGTATGTAC 57.220 39.130 2.65 0.00 38.22 2.90
2321 2390 4.444720 GCTCAAATGTATGTACCTAGACGC 59.555 45.833 0.00 0.00 0.00 5.19
2340 2409 3.511856 GCATTTCAGTGCGCTAGATAC 57.488 47.619 9.73 0.00 35.10 2.24
2341 2410 2.866156 GCATTTCAGTGCGCTAGATACA 59.134 45.455 9.73 0.00 35.10 2.29
2342 2411 3.496130 GCATTTCAGTGCGCTAGATACAT 59.504 43.478 9.73 0.00 35.10 2.29
2343 2412 4.376819 GCATTTCAGTGCGCTAGATACATC 60.377 45.833 9.73 0.00 35.10 3.06
2344 2413 3.371102 TTCAGTGCGCTAGATACATCC 57.629 47.619 9.73 0.00 0.00 3.51
2345 2414 1.266989 TCAGTGCGCTAGATACATCCG 59.733 52.381 9.73 0.00 0.00 4.18
2346 2415 1.001268 CAGTGCGCTAGATACATCCGT 60.001 52.381 9.73 0.00 0.00 4.69
2347 2416 1.681793 AGTGCGCTAGATACATCCGTT 59.318 47.619 9.73 0.00 0.00 4.44
2348 2417 2.100916 AGTGCGCTAGATACATCCGTTT 59.899 45.455 9.73 0.00 0.00 3.60
2349 2418 3.317149 AGTGCGCTAGATACATCCGTTTA 59.683 43.478 9.73 0.00 0.00 2.01
2350 2419 4.046462 GTGCGCTAGATACATCCGTTTAA 58.954 43.478 9.73 0.00 0.00 1.52
2351 2420 4.148348 GTGCGCTAGATACATCCGTTTAAG 59.852 45.833 9.73 0.00 0.00 1.85
2352 2421 3.121445 GCGCTAGATACATCCGTTTAAGC 59.879 47.826 0.00 0.00 0.00 3.09
2353 2422 3.361053 CGCTAGATACATCCGTTTAAGCG 59.639 47.826 4.55 4.55 43.34 4.68
2354 2423 4.296690 GCTAGATACATCCGTTTAAGCGT 58.703 43.478 10.88 0.00 0.00 5.07
2355 2424 4.382160 GCTAGATACATCCGTTTAAGCGTC 59.618 45.833 10.88 0.73 0.00 5.19
2356 2425 4.380841 AGATACATCCGTTTAAGCGTCA 57.619 40.909 10.88 0.00 0.00 4.35
2357 2426 4.751060 AGATACATCCGTTTAAGCGTCAA 58.249 39.130 10.88 0.00 0.00 3.18
2358 2427 4.565564 AGATACATCCGTTTAAGCGTCAAC 59.434 41.667 10.88 0.00 0.00 3.18
2359 2428 2.762745 ACATCCGTTTAAGCGTCAACT 58.237 42.857 10.88 0.00 0.00 3.16
2360 2429 3.916761 ACATCCGTTTAAGCGTCAACTA 58.083 40.909 10.88 0.00 0.00 2.24
2361 2430 4.309099 ACATCCGTTTAAGCGTCAACTAA 58.691 39.130 10.88 0.00 0.00 2.24
2362 2431 4.387862 ACATCCGTTTAAGCGTCAACTAAG 59.612 41.667 10.88 0.00 0.00 2.18
2363 2432 3.981211 TCCGTTTAAGCGTCAACTAAGT 58.019 40.909 10.88 0.00 0.00 2.24
2364 2433 3.737266 TCCGTTTAAGCGTCAACTAAGTG 59.263 43.478 10.88 0.00 0.00 3.16
2365 2434 3.466836 CGTTTAAGCGTCAACTAAGTGC 58.533 45.455 3.26 0.00 0.00 4.40
2366 2435 3.466836 GTTTAAGCGTCAACTAAGTGCG 58.533 45.455 0.00 0.00 0.00 5.34
2367 2436 1.065358 TAAGCGTCAACTAAGTGCGC 58.935 50.000 0.00 0.00 41.31 6.09
2378 2447 4.506886 ACTAAGTGCGCTAGATACATCC 57.493 45.455 9.73 0.00 0.00 3.51
2382 2451 2.052157 GTGCGCTAGATACATCCGTTC 58.948 52.381 9.73 0.00 0.00 3.95
2410 2479 0.032813 ACTAATTCCGGACGGAGGGA 60.033 55.000 13.64 0.00 46.06 4.20
2411 2480 0.674534 CTAATTCCGGACGGAGGGAG 59.325 60.000 13.64 8.24 46.06 4.30
2412 2481 0.032813 TAATTCCGGACGGAGGGAGT 60.033 55.000 13.64 1.45 46.06 3.85
2443 2533 0.238289 GGACCTGCATTTGTGTGACG 59.762 55.000 0.00 0.00 0.00 4.35
2461 2551 4.748102 GTGACGAAATGACTTTACCTGTCA 59.252 41.667 0.00 0.00 46.58 3.58
2641 2731 4.094294 TGAGCGATACATTAAGGTTTGTGC 59.906 41.667 0.00 0.00 0.00 4.57
2668 2758 9.774742 GTTCAAGGATTATTGTTACAGTGATTC 57.225 33.333 0.00 0.00 0.00 2.52
2680 2770 1.802960 CAGTGATTCTGTGCTGTCCAC 59.197 52.381 0.00 0.00 44.90 4.02
2694 2785 4.455533 TGCTGTCCACTAAATGTAAAGCAG 59.544 41.667 0.00 0.00 33.49 4.24
2695 2786 4.455877 GCTGTCCACTAAATGTAAAGCAGT 59.544 41.667 0.00 0.00 0.00 4.40
2736 2829 3.107601 AGCATCTGAAGGTACAAGCCTA 58.892 45.455 0.00 0.00 38.03 3.93
2859 3108 6.502158 AGTCCTAATCTAACTTGGGGGATATG 59.498 42.308 0.00 0.00 0.00 1.78
2872 3121 5.162637 TGGGGGATATGTAGAGCACTTAAT 58.837 41.667 0.00 0.00 0.00 1.40
2925 3174 6.362248 AGATGTTGTTGGTACCTTTACTTGT 58.638 36.000 14.36 0.96 0.00 3.16
2926 3175 7.511268 AGATGTTGTTGGTACCTTTACTTGTA 58.489 34.615 14.36 0.00 0.00 2.41
2927 3176 6.923928 TGTTGTTGGTACCTTTACTTGTAC 57.076 37.500 14.36 6.91 37.26 2.90
2928 3177 6.652053 TGTTGTTGGTACCTTTACTTGTACT 58.348 36.000 14.36 0.00 37.92 2.73
2929 3178 6.762661 TGTTGTTGGTACCTTTACTTGTACTC 59.237 38.462 14.36 0.00 37.92 2.59
2930 3179 5.857268 TGTTGGTACCTTTACTTGTACTCC 58.143 41.667 14.36 0.00 37.92 3.85
2931 3180 5.221702 TGTTGGTACCTTTACTTGTACTCCC 60.222 44.000 14.36 0.00 37.92 4.30
2932 3181 4.755437 TGGTACCTTTACTTGTACTCCCT 58.245 43.478 14.36 0.00 37.92 4.20
2933 3182 4.774200 TGGTACCTTTACTTGTACTCCCTC 59.226 45.833 14.36 0.00 37.92 4.30
2934 3183 4.161189 GGTACCTTTACTTGTACTCCCTCC 59.839 50.000 4.06 0.00 37.92 4.30
2935 3184 2.830321 ACCTTTACTTGTACTCCCTCCG 59.170 50.000 0.00 0.00 0.00 4.63
2936 3185 2.830321 CCTTTACTTGTACTCCCTCCGT 59.170 50.000 0.00 0.00 0.00 4.69
2937 3186 3.260128 CCTTTACTTGTACTCCCTCCGTT 59.740 47.826 0.00 0.00 0.00 4.44
2938 3187 4.492611 CTTTACTTGTACTCCCTCCGTTC 58.507 47.826 0.00 0.00 0.00 3.95
2939 3188 1.264295 ACTTGTACTCCCTCCGTTCC 58.736 55.000 0.00 0.00 0.00 3.62
2940 3189 1.203149 ACTTGTACTCCCTCCGTTCCT 60.203 52.381 0.00 0.00 0.00 3.36
2941 3190 2.042162 ACTTGTACTCCCTCCGTTCCTA 59.958 50.000 0.00 0.00 0.00 2.94
2942 3191 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
2943 3192 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
2944 3193 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
2945 3194 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
2946 3195 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
2947 3196 6.613699 TGTACTCCCTCCGTTCCTAAATATA 58.386 40.000 0.00 0.00 0.00 0.86
2948 3197 7.068702 TGTACTCCCTCCGTTCCTAAATATAA 58.931 38.462 0.00 0.00 0.00 0.98
2949 3198 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2950 3199 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2951 3200 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
2952 3201 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
2953 3202 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
2954 3203 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
2955 3204 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
2956 3205 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
2971 3220 6.783708 AGTCTTTGTAGAGATTCCACTAGG 57.216 41.667 0.00 0.00 0.00 3.02
2972 3221 6.257586 AGTCTTTGTAGAGATTCCACTAGGT 58.742 40.000 0.00 0.00 35.89 3.08
2973 3222 6.153680 AGTCTTTGTAGAGATTCCACTAGGTG 59.846 42.308 0.00 0.00 35.89 4.00
2988 3237 4.942483 CACTAGGTGGACTATATACGGAGG 59.058 50.000 0.00 0.00 0.00 4.30
2989 3238 4.848660 ACTAGGTGGACTATATACGGAGGA 59.151 45.833 0.00 0.00 0.00 3.71
2990 3239 4.736611 AGGTGGACTATATACGGAGGAA 57.263 45.455 0.00 0.00 0.00 3.36
2991 3240 5.070823 AGGTGGACTATATACGGAGGAAA 57.929 43.478 0.00 0.00 0.00 3.13
2992 3241 5.461327 AGGTGGACTATATACGGAGGAAAA 58.539 41.667 0.00 0.00 0.00 2.29
2993 3242 6.082707 AGGTGGACTATATACGGAGGAAAAT 58.917 40.000 0.00 0.00 0.00 1.82
2994 3243 6.014499 AGGTGGACTATATACGGAGGAAAATG 60.014 42.308 0.00 0.00 0.00 2.32
2995 3244 6.014840 GGTGGACTATATACGGAGGAAAATGA 60.015 42.308 0.00 0.00 0.00 2.57
2996 3245 7.439381 GTGGACTATATACGGAGGAAAATGAA 58.561 38.462 0.00 0.00 0.00 2.57
2997 3246 8.095169 GTGGACTATATACGGAGGAAAATGAAT 58.905 37.037 0.00 0.00 0.00 2.57
2998 3247 8.094548 TGGACTATATACGGAGGAAAATGAATG 58.905 37.037 0.00 0.00 0.00 2.67
2999 3248 8.311836 GGACTATATACGGAGGAAAATGAATGA 58.688 37.037 0.00 0.00 0.00 2.57
3000 3249 9.706691 GACTATATACGGAGGAAAATGAATGAA 57.293 33.333 0.00 0.00 0.00 2.57
3005 3254 6.927294 ACGGAGGAAAATGAATGAATCTAC 57.073 37.500 0.00 0.00 0.00 2.59
3006 3255 6.414732 ACGGAGGAAAATGAATGAATCTACA 58.585 36.000 0.00 0.00 0.00 2.74
3007 3256 6.316390 ACGGAGGAAAATGAATGAATCTACAC 59.684 38.462 0.00 0.00 0.00 2.90
3008 3257 6.540189 CGGAGGAAAATGAATGAATCTACACT 59.460 38.462 0.00 0.00 0.00 3.55
3009 3258 7.066284 CGGAGGAAAATGAATGAATCTACACTT 59.934 37.037 0.00 0.00 0.00 3.16
3010 3259 9.396022 GGAGGAAAATGAATGAATCTACACTTA 57.604 33.333 0.00 0.00 0.00 2.24
3038 3287 6.805713 TGCATCTATATACATCCGTATGTGG 58.194 40.000 3.56 0.00 45.99 4.17
3039 3288 6.379988 TGCATCTATATACATCCGTATGTGGT 59.620 38.462 3.56 0.00 45.99 4.16
3040 3289 7.093509 TGCATCTATATACATCCGTATGTGGTT 60.094 37.037 3.56 0.00 45.99 3.67
3041 3290 7.435488 GCATCTATATACATCCGTATGTGGTTC 59.565 40.741 3.56 0.00 45.99 3.62
3042 3291 8.466798 CATCTATATACATCCGTATGTGGTTCA 58.533 37.037 3.56 0.00 45.99 3.18
3043 3292 8.589701 TCTATATACATCCGTATGTGGTTCAT 57.410 34.615 3.56 0.00 45.99 2.57
3044 3293 9.689501 TCTATATACATCCGTATGTGGTTCATA 57.310 33.333 3.56 0.00 45.99 2.15
3045 3294 9.952188 CTATATACATCCGTATGTGGTTCATAG 57.048 37.037 3.56 0.80 45.99 2.23
3046 3295 6.665992 ATACATCCGTATGTGGTTCATAGT 57.334 37.500 3.56 0.00 45.99 2.12
3047 3296 4.693283 ACATCCGTATGTGGTTCATAGTG 58.307 43.478 0.00 0.00 44.79 2.74
3048 3297 3.812156 TCCGTATGTGGTTCATAGTGG 57.188 47.619 0.00 0.00 39.36 4.00
3049 3298 3.367321 TCCGTATGTGGTTCATAGTGGA 58.633 45.455 0.00 0.00 39.94 4.02
3050 3299 3.770388 TCCGTATGTGGTTCATAGTGGAA 59.230 43.478 0.00 0.00 39.60 3.53
3051 3300 4.407621 TCCGTATGTGGTTCATAGTGGAAT 59.592 41.667 0.00 0.00 39.60 3.01
3052 3301 4.750098 CCGTATGTGGTTCATAGTGGAATC 59.250 45.833 0.00 0.00 39.36 2.52
3053 3302 5.453339 CCGTATGTGGTTCATAGTGGAATCT 60.453 44.000 0.00 0.00 39.36 2.40
3054 3303 5.692204 CGTATGTGGTTCATAGTGGAATCTC 59.308 44.000 0.00 0.00 39.36 2.75
3055 3304 5.965033 ATGTGGTTCATAGTGGAATCTCT 57.035 39.130 0.00 0.00 34.67 3.10
3056 3305 7.255486 CGTATGTGGTTCATAGTGGAATCTCTA 60.255 40.741 0.00 0.00 39.36 2.43
3057 3306 6.222038 TGTGGTTCATAGTGGAATCTCTAC 57.778 41.667 0.00 0.00 0.00 2.59
3058 3307 5.719563 TGTGGTTCATAGTGGAATCTCTACA 59.280 40.000 0.00 0.00 29.47 2.74
3059 3308 6.212589 TGTGGTTCATAGTGGAATCTCTACAA 59.787 38.462 0.00 0.00 29.47 2.41
3060 3309 7.103641 GTGGTTCATAGTGGAATCTCTACAAA 58.896 38.462 0.00 0.00 29.47 2.83
3061 3310 7.278868 GTGGTTCATAGTGGAATCTCTACAAAG 59.721 40.741 0.00 0.00 29.47 2.77
3062 3311 7.180229 TGGTTCATAGTGGAATCTCTACAAAGA 59.820 37.037 0.00 0.00 29.47 2.52
3063 3312 7.492994 GGTTCATAGTGGAATCTCTACAAAGAC 59.507 40.741 0.00 0.00 29.47 3.01
3064 3313 7.962995 TCATAGTGGAATCTCTACAAAGACT 57.037 36.000 0.00 0.00 29.47 3.24
3065 3314 8.367660 TCATAGTGGAATCTCTACAAAGACTT 57.632 34.615 0.00 0.00 29.47 3.01
3066 3315 9.475620 TCATAGTGGAATCTCTACAAAGACTTA 57.524 33.333 0.00 0.00 29.47 2.24
3067 3316 9.522804 CATAGTGGAATCTCTACAAAGACTTAC 57.477 37.037 0.00 0.00 29.47 2.34
3068 3317 7.540474 AGTGGAATCTCTACAAAGACTTACA 57.460 36.000 0.00 0.00 29.47 2.41
3069 3318 8.140112 AGTGGAATCTCTACAAAGACTTACAT 57.860 34.615 0.00 0.00 29.47 2.29
3070 3319 8.598041 AGTGGAATCTCTACAAAGACTTACATT 58.402 33.333 0.00 0.00 29.47 2.71
3071 3320 9.220767 GTGGAATCTCTACAAAGACTTACATTT 57.779 33.333 0.00 0.00 0.00 2.32
3077 3326 9.924650 TCTCTACAAAGACTTACATTTAGGAAC 57.075 33.333 0.00 0.00 0.00 3.62
3078 3327 8.752766 TCTACAAAGACTTACATTTAGGAACG 57.247 34.615 0.00 0.00 0.00 3.95
3079 3328 6.796705 ACAAAGACTTACATTTAGGAACGG 57.203 37.500 0.00 0.00 0.00 4.44
3080 3329 6.527423 ACAAAGACTTACATTTAGGAACGGA 58.473 36.000 0.00 0.00 0.00 4.69
3081 3330 6.649557 ACAAAGACTTACATTTAGGAACGGAG 59.350 38.462 0.00 0.00 0.00 4.63
3082 3331 5.340439 AGACTTACATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
3083 3332 4.161754 AGACTTACATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
3084 3333 4.098894 ACTTACATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
3085 3334 4.161754 ACTTACATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
3086 3335 2.547990 ACATTTAGGAACGGAGGGAGT 58.452 47.619 0.00 0.00 0.00 3.85
3583 3840 1.173043 CTTGGTTCGCTTATGGCCAA 58.827 50.000 10.96 0.00 37.60 4.52
3668 3925 5.591877 AGGCTGGTCATGAAAATGTAATCTC 59.408 40.000 0.00 0.00 0.00 2.75
3669 3926 5.591877 GGCTGGTCATGAAAATGTAATCTCT 59.408 40.000 0.00 0.00 0.00 3.10
3711 3968 1.002274 AGAGAGATTGCCCCCTCGT 59.998 57.895 0.00 0.00 34.75 4.18
3753 4010 2.883122 ACTACTTGGTCTCTCGGACT 57.117 50.000 0.00 0.00 43.97 3.85
3756 4013 1.540267 ACTTGGTCTCTCGGACTCTG 58.460 55.000 0.00 0.00 43.97 3.35
3819 4081 5.129650 TCCAGTCCATATCCATTTGTAACGA 59.870 40.000 0.00 0.00 0.00 3.85
3964 4226 0.330604 ATCTTGTGCAGCACCCTCAT 59.669 50.000 23.06 6.79 32.73 2.90
4002 4264 0.938637 TGCCATTTGTTTCGCTTGCG 60.939 50.000 8.87 8.87 0.00 4.85
4019 4281 2.024590 GCGGCCTATACGTCTGGGTT 62.025 60.000 0.00 0.00 0.00 4.11
4032 4294 3.081804 GTCTGGGTTTACAGGATTGTGG 58.918 50.000 0.00 0.00 38.23 4.17
4058 4320 2.429971 TGCACAATCCTGAAGCACAAAA 59.570 40.909 0.00 0.00 34.06 2.44
4104 4373 6.610075 AATGGGTATTCTTCATGCAGTTTT 57.390 33.333 0.00 0.00 0.00 2.43
4113 4382 4.823442 TCTTCATGCAGTTTTGAGTGTGAT 59.177 37.500 0.00 0.00 0.00 3.06
4123 4392 6.372659 CAGTTTTGAGTGTGATTACAGCCTAT 59.627 38.462 0.00 0.00 37.52 2.57
4125 4394 6.985188 TTTGAGTGTGATTACAGCCTATTC 57.015 37.500 0.00 0.00 37.52 1.75
4131 4400 6.058183 GTGTGATTACAGCCTATTCAGGATT 58.942 40.000 0.00 0.00 37.20 3.01
4154 4423 2.353208 GCAGCCTATAAGTCTGGGATCG 60.353 54.545 0.00 0.00 0.00 3.69
4160 4429 0.461548 TAAGTCTGGGATCGCAGCAG 59.538 55.000 29.70 12.25 0.00 4.24
4161 4430 2.866085 AAGTCTGGGATCGCAGCAGC 62.866 60.000 29.70 21.79 37.42 5.25
4174 4443 1.926510 GCAGCAGCAACGTTTCTTTTT 59.073 42.857 0.00 0.00 41.58 1.94
4183 4452 4.438148 CAACGTTTCTTTTTGGGTGGATT 58.562 39.130 0.00 0.00 0.00 3.01
4237 4511 1.200948 GCTCCTGCAGTTCAAACATCC 59.799 52.381 13.81 0.00 39.41 3.51
4243 4517 4.021719 CCTGCAGTTCAAACATCCTGAAAT 60.022 41.667 13.81 0.00 34.68 2.17
4254 4528 4.942852 ACATCCTGAAATCTTCGCTCTAG 58.057 43.478 0.00 0.00 0.00 2.43
4281 4555 4.569023 CCGGCAGCGCGACTATGA 62.569 66.667 12.10 0.00 0.00 2.15
4282 4556 3.323136 CGGCAGCGCGACTATGAC 61.323 66.667 12.10 3.15 0.00 3.06
4283 4557 2.962253 GGCAGCGCGACTATGACC 60.962 66.667 12.10 4.69 0.00 4.02
4284 4558 2.962253 GCAGCGCGACTATGACCC 60.962 66.667 12.10 0.00 0.00 4.46
4285 4559 2.655364 CAGCGCGACTATGACCCG 60.655 66.667 12.10 0.00 0.00 5.28
4286 4560 3.900892 AGCGCGACTATGACCCGG 61.901 66.667 12.10 0.00 0.00 5.73
4287 4561 4.203076 GCGCGACTATGACCCGGT 62.203 66.667 12.10 0.00 0.00 5.28
4288 4562 2.493030 CGCGACTATGACCCGGTT 59.507 61.111 0.00 0.00 0.00 4.44
4289 4563 1.153706 CGCGACTATGACCCGGTTT 60.154 57.895 0.00 0.00 0.00 3.27
4290 4564 1.418342 CGCGACTATGACCCGGTTTG 61.418 60.000 0.00 0.00 0.00 2.93
4291 4565 1.087771 GCGACTATGACCCGGTTTGG 61.088 60.000 0.00 0.00 37.55 3.28
4292 4566 0.248289 CGACTATGACCCGGTTTGGT 59.752 55.000 0.00 0.00 42.79 3.67
4293 4567 1.477700 CGACTATGACCCGGTTTGGTA 59.522 52.381 0.00 0.00 39.24 3.25
4294 4568 2.094078 CGACTATGACCCGGTTTGGTAA 60.094 50.000 0.00 0.00 39.24 2.85
4295 4569 3.431207 CGACTATGACCCGGTTTGGTAAT 60.431 47.826 0.00 0.00 39.24 1.89
4296 4570 4.124970 GACTATGACCCGGTTTGGTAATC 58.875 47.826 0.00 0.00 39.24 1.75
4297 4571 3.520317 ACTATGACCCGGTTTGGTAATCA 59.480 43.478 0.00 0.00 39.24 2.57
4298 4572 2.188062 TGACCCGGTTTGGTAATCAC 57.812 50.000 0.00 0.00 39.24 3.06
4299 4573 1.271488 TGACCCGGTTTGGTAATCACC 60.271 52.381 0.00 0.00 46.00 4.02
4307 4581 4.857251 GGTAATCACCAGCTCCCG 57.143 61.111 0.00 0.00 45.04 5.14
4308 4582 1.146263 GGTAATCACCAGCTCCCGG 59.854 63.158 0.00 0.00 45.04 5.73
4309 4583 1.335132 GGTAATCACCAGCTCCCGGA 61.335 60.000 0.73 0.00 45.04 5.14
4310 4584 0.539986 GTAATCACCAGCTCCCGGAA 59.460 55.000 0.73 0.00 0.00 4.30
4311 4585 1.141053 GTAATCACCAGCTCCCGGAAT 59.859 52.381 0.73 0.00 0.00 3.01
4312 4586 0.181350 AATCACCAGCTCCCGGAATC 59.819 55.000 0.73 0.00 0.00 2.52
4313 4587 1.700042 ATCACCAGCTCCCGGAATCC 61.700 60.000 0.73 0.00 0.00 3.01
4315 4589 4.918201 CCAGCTCCCGGAATCCGC 62.918 72.222 17.50 2.02 46.86 5.54
4316 4590 3.854669 CAGCTCCCGGAATCCGCT 61.855 66.667 17.50 4.73 46.86 5.52
4317 4591 3.854669 AGCTCCCGGAATCCGCTG 61.855 66.667 17.50 9.64 46.86 5.18
4318 4592 3.849951 GCTCCCGGAATCCGCTGA 61.850 66.667 17.50 13.54 46.86 4.26
4319 4593 2.419198 CTCCCGGAATCCGCTGAG 59.581 66.667 17.50 18.88 46.86 3.35
4320 4594 3.798954 CTCCCGGAATCCGCTGAGC 62.799 68.421 17.50 0.00 46.86 4.26
4331 4605 3.172919 GCTGAGCGAGGAAACTGC 58.827 61.111 0.00 0.00 44.43 4.40
4332 4606 1.669115 GCTGAGCGAGGAAACTGCA 60.669 57.895 0.00 0.00 44.43 4.41
4333 4607 1.633852 GCTGAGCGAGGAAACTGCAG 61.634 60.000 13.48 13.48 44.43 4.41
4334 4608 1.633852 CTGAGCGAGGAAACTGCAGC 61.634 60.000 15.27 0.00 44.43 5.25
4335 4609 1.375268 GAGCGAGGAAACTGCAGCT 60.375 57.895 15.27 2.45 44.43 4.24
4336 4610 1.357991 GAGCGAGGAAACTGCAGCTC 61.358 60.000 15.27 11.21 45.36 4.09
4337 4611 2.394563 GCGAGGAAACTGCAGCTCC 61.395 63.158 22.39 22.39 44.43 4.70
4338 4612 2.097038 CGAGGAAACTGCAGCTCCG 61.097 63.158 23.16 12.82 44.43 4.63
4339 4613 2.359230 AGGAAACTGCAGCTCCGC 60.359 61.111 23.16 6.89 41.13 5.54
4340 4614 3.435186 GGAAACTGCAGCTCCGCC 61.435 66.667 15.27 4.74 0.00 6.13
4341 4615 2.669569 GAAACTGCAGCTCCGCCA 60.670 61.111 15.27 0.00 0.00 5.69
4342 4616 2.670934 AAACTGCAGCTCCGCCAG 60.671 61.111 15.27 0.00 0.00 4.85
4356 4630 3.307445 CCAGCTCTGGGAGTGGAG 58.693 66.667 8.03 0.00 46.81 3.86
4357 4631 1.611851 CCAGCTCTGGGAGTGGAGT 60.612 63.158 8.03 0.00 46.81 3.85
4358 4632 1.197430 CCAGCTCTGGGAGTGGAGTT 61.197 60.000 8.03 0.00 46.81 3.01
4359 4633 0.036577 CAGCTCTGGGAGTGGAGTTG 60.037 60.000 0.00 0.00 35.28 3.16
4360 4634 0.472734 AGCTCTGGGAGTGGAGTTGT 60.473 55.000 0.00 0.00 31.39 3.32
4361 4635 0.321122 GCTCTGGGAGTGGAGTTGTG 60.321 60.000 0.00 0.00 31.39 3.33
4362 4636 0.322975 CTCTGGGAGTGGAGTTGTGG 59.677 60.000 0.00 0.00 0.00 4.17
4363 4637 0.105194 TCTGGGAGTGGAGTTGTGGA 60.105 55.000 0.00 0.00 0.00 4.02
4364 4638 0.322975 CTGGGAGTGGAGTTGTGGAG 59.677 60.000 0.00 0.00 0.00 3.86
4365 4639 1.003233 GGGAGTGGAGTTGTGGAGC 60.003 63.158 0.00 0.00 0.00 4.70
4366 4640 1.374758 GGAGTGGAGTTGTGGAGCG 60.375 63.158 0.00 0.00 0.00 5.03
4367 4641 1.374758 GAGTGGAGTTGTGGAGCGG 60.375 63.158 0.00 0.00 0.00 5.52
4368 4642 1.816863 GAGTGGAGTTGTGGAGCGGA 61.817 60.000 0.00 0.00 0.00 5.54
4369 4643 1.374758 GTGGAGTTGTGGAGCGGAG 60.375 63.158 0.00 0.00 0.00 4.63
4392 4666 4.857251 CCGAACAGGGCCTATGTC 57.143 61.111 5.28 2.66 35.97 3.06
4393 4667 2.212327 CCGAACAGGGCCTATGTCT 58.788 57.895 5.28 5.61 35.97 3.41
4394 4668 0.105039 CCGAACAGGGCCTATGTCTC 59.895 60.000 5.28 11.79 35.97 3.36
4395 4669 0.249073 CGAACAGGGCCTATGTCTCG 60.249 60.000 5.28 19.93 0.00 4.04
4396 4670 0.530870 GAACAGGGCCTATGTCTCGC 60.531 60.000 5.28 2.55 0.00 5.03
4397 4671 2.028190 CAGGGCCTATGTCTCGCG 59.972 66.667 5.28 0.00 0.00 5.87
4398 4672 2.442272 AGGGCCTATGTCTCGCGT 60.442 61.111 2.82 0.00 0.00 6.01
4399 4673 1.152819 AGGGCCTATGTCTCGCGTA 60.153 57.895 2.82 0.00 0.00 4.42
4400 4674 0.539901 AGGGCCTATGTCTCGCGTAT 60.540 55.000 2.82 0.00 0.00 3.06
4401 4675 1.171308 GGGCCTATGTCTCGCGTATA 58.829 55.000 5.77 0.68 0.00 1.47
4402 4676 1.132643 GGGCCTATGTCTCGCGTATAG 59.867 57.143 5.77 10.19 0.00 1.31
4403 4677 1.467713 GGCCTATGTCTCGCGTATAGC 60.468 57.143 5.77 7.03 43.95 2.97
4420 4694 2.736236 CGAGTTGCAGCGCAGACT 60.736 61.111 11.47 7.48 40.61 3.24
4421 4695 2.724708 CGAGTTGCAGCGCAGACTC 61.725 63.158 11.47 15.29 40.61 3.36
4422 4696 2.724708 GAGTTGCAGCGCAGACTCG 61.725 63.158 11.47 0.00 40.61 4.18
4440 4714 2.126228 CGTCTAGCAACCGCCGAA 60.126 61.111 0.00 0.00 39.83 4.30
4441 4715 1.518572 CGTCTAGCAACCGCCGAAT 60.519 57.895 0.00 0.00 39.83 3.34
4442 4716 1.752501 CGTCTAGCAACCGCCGAATG 61.753 60.000 0.00 0.00 39.83 2.67
4443 4717 1.153449 TCTAGCAACCGCCGAATGG 60.153 57.895 0.00 0.00 39.83 3.16
4444 4718 2.124901 TAGCAACCGCCGAATGGG 60.125 61.111 0.00 0.00 39.83 4.00
4467 4741 4.326255 CCAGCAGGGACCACATTC 57.674 61.111 0.00 0.00 40.01 2.67
4468 4742 1.379044 CCAGCAGGGACCACATTCC 60.379 63.158 0.00 0.00 40.01 3.01
4469 4743 1.687612 CAGCAGGGACCACATTCCT 59.312 57.895 0.00 0.00 35.76 3.36
4470 4744 0.038744 CAGCAGGGACCACATTCCTT 59.961 55.000 0.00 0.00 35.76 3.36
4471 4745 0.038744 AGCAGGGACCACATTCCTTG 59.961 55.000 0.00 0.00 43.96 3.61
4472 4746 0.038166 GCAGGGACCACATTCCTTGA 59.962 55.000 5.51 0.00 43.87 3.02
4473 4747 1.952367 GCAGGGACCACATTCCTTGAG 60.952 57.143 5.51 0.00 43.87 3.02
4474 4748 0.329596 AGGGACCACATTCCTTGAGC 59.670 55.000 0.00 0.00 35.76 4.26
4475 4749 0.038166 GGGACCACATTCCTTGAGCA 59.962 55.000 0.00 0.00 35.76 4.26
4476 4750 1.168714 GGACCACATTCCTTGAGCAC 58.831 55.000 0.00 0.00 32.24 4.40
4477 4751 1.271597 GGACCACATTCCTTGAGCACT 60.272 52.381 0.00 0.00 32.24 4.40
4478 4752 2.079925 GACCACATTCCTTGAGCACTC 58.920 52.381 0.00 0.00 0.00 3.51
4479 4753 1.701847 ACCACATTCCTTGAGCACTCT 59.298 47.619 0.00 0.00 0.00 3.24
4480 4754 2.107204 ACCACATTCCTTGAGCACTCTT 59.893 45.455 0.00 0.00 0.00 2.85
4481 4755 3.152341 CCACATTCCTTGAGCACTCTTT 58.848 45.455 0.00 0.00 0.00 2.52
4482 4756 3.571401 CCACATTCCTTGAGCACTCTTTT 59.429 43.478 0.00 0.00 0.00 2.27
4483 4757 4.543692 CACATTCCTTGAGCACTCTTTTG 58.456 43.478 0.00 0.00 0.00 2.44
4484 4758 4.037208 CACATTCCTTGAGCACTCTTTTGT 59.963 41.667 0.00 0.00 0.00 2.83
4485 4759 4.276926 ACATTCCTTGAGCACTCTTTTGTC 59.723 41.667 0.00 0.00 0.00 3.18
4486 4760 2.851195 TCCTTGAGCACTCTTTTGTCC 58.149 47.619 0.00 0.00 0.00 4.02
4487 4761 2.439507 TCCTTGAGCACTCTTTTGTCCT 59.560 45.455 0.00 0.00 0.00 3.85
4488 4762 3.117888 TCCTTGAGCACTCTTTTGTCCTT 60.118 43.478 0.00 0.00 0.00 3.36
4489 4763 3.633986 CCTTGAGCACTCTTTTGTCCTTT 59.366 43.478 0.00 0.00 0.00 3.11
4490 4764 4.098501 CCTTGAGCACTCTTTTGTCCTTTT 59.901 41.667 0.00 0.00 0.00 2.27
4491 4765 4.637483 TGAGCACTCTTTTGTCCTTTTG 57.363 40.909 0.00 0.00 0.00 2.44
4492 4766 4.016444 TGAGCACTCTTTTGTCCTTTTGT 58.984 39.130 0.00 0.00 0.00 2.83
4493 4767 4.462483 TGAGCACTCTTTTGTCCTTTTGTT 59.538 37.500 0.00 0.00 0.00 2.83
4494 4768 5.047377 TGAGCACTCTTTTGTCCTTTTGTTT 60.047 36.000 0.00 0.00 0.00 2.83
4495 4769 5.793817 AGCACTCTTTTGTCCTTTTGTTTT 58.206 33.333 0.00 0.00 0.00 2.43
4496 4770 6.230472 AGCACTCTTTTGTCCTTTTGTTTTT 58.770 32.000 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.107378 TGGACAAACTGAGGCAATACCA 59.893 45.455 0.00 0.00 43.14 3.25
27 28 0.836606 TGACTGGACAAACTGAGGCA 59.163 50.000 0.00 0.00 0.00 4.75
34 35 4.304110 TCAGTATTCGTGACTGGACAAAC 58.696 43.478 12.07 0.00 43.76 2.93
40 41 3.526931 ACCATCAGTATTCGTGACTGG 57.473 47.619 12.07 6.93 43.76 4.00
42 43 5.828328 TGATCTACCATCAGTATTCGTGACT 59.172 40.000 0.00 0.00 0.00 3.41
46 47 6.321435 TGAGTTGATCTACCATCAGTATTCGT 59.679 38.462 3.54 0.00 0.00 3.85
51 52 5.163509 GCACTGAGTTGATCTACCATCAGTA 60.164 44.000 22.44 0.00 44.02 2.74
57 58 1.555075 GGGCACTGAGTTGATCTACCA 59.445 52.381 3.54 1.71 0.00 3.25
58 59 1.471676 CGGGCACTGAGTTGATCTACC 60.472 57.143 3.54 0.00 36.31 3.18
90 91 0.468226 GCCCGGTTGAGACATATGGA 59.532 55.000 7.80 0.00 0.00 3.41
108 109 1.442857 CCTGTCTGTGTCGTCTCGC 60.443 63.158 0.00 0.00 0.00 5.03
109 110 1.128878 CTACCTGTCTGTGTCGTCTCG 59.871 57.143 0.00 0.00 0.00 4.04
110 111 2.152830 ACTACCTGTCTGTGTCGTCTC 58.847 52.381 0.00 0.00 0.00 3.36
119 120 7.148407 GGATCATGTTTAACAACTACCTGTCTG 60.148 40.741 0.66 0.00 33.58 3.51
121 122 6.653320 TGGATCATGTTTAACAACTACCTGTC 59.347 38.462 0.66 0.00 33.58 3.51
122 123 6.430000 GTGGATCATGTTTAACAACTACCTGT 59.570 38.462 0.66 0.00 33.58 4.00
125 136 6.811253 TGTGGATCATGTTTAACAACTACC 57.189 37.500 0.66 5.04 33.58 3.18
151 162 2.683933 TTCTCCGCCTCTGTCCCC 60.684 66.667 0.00 0.00 0.00 4.81
161 172 2.202810 CCCTTCTCGCTTCTCCGC 60.203 66.667 0.00 0.00 0.00 5.54
182 193 0.036952 CTCACTGTCATCTTGCCCGT 60.037 55.000 0.00 0.00 0.00 5.28
184 195 0.326264 ACCTCACTGTCATCTTGCCC 59.674 55.000 0.00 0.00 0.00 5.36
196 207 2.761208 CAAGATACCCTCGAACCTCACT 59.239 50.000 0.00 0.00 0.00 3.41
203 214 2.569853 TCTTTGCCAAGATACCCTCGAA 59.430 45.455 0.00 0.00 33.80 3.71
204 215 2.184533 TCTTTGCCAAGATACCCTCGA 58.815 47.619 0.00 0.00 33.80 4.04
205 216 2.691409 TCTTTGCCAAGATACCCTCG 57.309 50.000 0.00 0.00 33.80 4.63
206 217 4.589908 TCTTTCTTTGCCAAGATACCCTC 58.410 43.478 0.37 0.00 38.89 4.30
207 218 4.568592 CCTCTTTCTTTGCCAAGATACCCT 60.569 45.833 0.37 0.00 38.89 4.34
208 219 3.696548 CCTCTTTCTTTGCCAAGATACCC 59.303 47.826 0.37 0.00 38.89 3.69
209 220 4.589908 TCCTCTTTCTTTGCCAAGATACC 58.410 43.478 0.37 0.00 38.89 2.73
210 221 4.637977 CCTCCTCTTTCTTTGCCAAGATAC 59.362 45.833 0.37 0.00 38.89 2.24
211 222 4.848357 CCTCCTCTTTCTTTGCCAAGATA 58.152 43.478 0.37 0.00 38.89 1.98
262 273 2.186532 ACCTCTTCGCCTTCTTTTCC 57.813 50.000 0.00 0.00 0.00 3.13
273 284 5.874810 TCCATCAAGATGTTAAACCTCTTCG 59.125 40.000 9.04 0.00 32.03 3.79
275 286 6.183347 CCTCCATCAAGATGTTAAACCTCTT 58.817 40.000 9.04 0.00 34.16 2.85
286 297 3.565764 TTGGTAGCCTCCATCAAGATG 57.434 47.619 3.07 3.07 37.33 2.90
287 298 3.782523 TCTTTGGTAGCCTCCATCAAGAT 59.217 43.478 7.42 0.00 37.33 2.40
289 300 3.634397 TCTTTGGTAGCCTCCATCAAG 57.366 47.619 0.00 1.62 37.33 3.02
307 318 5.013547 TCTCTTTGAGGTCGATCTTCTTCT 58.986 41.667 0.00 0.00 0.00 2.85
318 329 6.937465 AGTTTGGTCTTATTCTCTTTGAGGTC 59.063 38.462 0.00 0.00 0.00 3.85
325 336 8.432805 TCTCTTCAAGTTTGGTCTTATTCTCTT 58.567 33.333 0.00 0.00 0.00 2.85
336 347 2.373502 CCCTCCTCTCTTCAAGTTTGGT 59.626 50.000 0.00 0.00 0.00 3.67
339 350 3.716872 TCAACCCTCCTCTCTTCAAGTTT 59.283 43.478 0.00 0.00 0.00 2.66
370 381 4.336433 ACATTTTGGTATCATCTGAAGCGG 59.664 41.667 0.00 0.00 0.00 5.52
380 391 5.047448 CCACATGGTCAACATTTTGGTATCA 60.047 40.000 0.00 0.00 37.84 2.15
399 410 1.275666 TCCAACTCGTCCATCCACAT 58.724 50.000 0.00 0.00 0.00 3.21
400 411 1.207089 GATCCAACTCGTCCATCCACA 59.793 52.381 0.00 0.00 0.00 4.17
409 420 0.179100 CGCATCAGGATCCAACTCGT 60.179 55.000 15.82 0.00 0.00 4.18
411 422 1.162800 GCCGCATCAGGATCCAACTC 61.163 60.000 15.82 0.00 0.00 3.01
443 454 0.248012 ACATATTGACACGGGCGACA 59.752 50.000 0.00 0.00 0.00 4.35
475 486 1.597027 GTCACCACCACCTTGACCG 60.597 63.158 0.00 0.00 34.72 4.79
480 491 1.052124 TTCTCGGTCACCACCACCTT 61.052 55.000 0.00 0.00 44.02 3.50
483 494 1.004918 CCTTCTCGGTCACCACCAC 60.005 63.158 0.00 0.00 44.02 4.16
492 503 4.798682 ATCCGCCCCCTTCTCGGT 62.799 66.667 0.00 0.00 43.35 4.69
500 511 0.537371 CTTAATCACCATCCGCCCCC 60.537 60.000 0.00 0.00 0.00 5.40
510 521 3.169733 GACTCGTCGTCACTTAATCACC 58.830 50.000 0.00 0.00 42.37 4.02
549 564 0.326595 TTTGCCCTTGCGGATCAGTA 59.673 50.000 0.00 0.00 41.78 2.74
552 567 1.067000 CATTTTTGCCCTTGCGGATCA 60.067 47.619 0.00 0.00 41.78 2.92
553 568 1.643880 CATTTTTGCCCTTGCGGATC 58.356 50.000 0.00 0.00 41.78 3.36
630 649 1.812571 CCGATCACAACCCAAAGAAGG 59.187 52.381 0.00 0.00 0.00 3.46
634 653 1.165270 GTCCCGATCACAACCCAAAG 58.835 55.000 0.00 0.00 0.00 2.77
647 666 3.376859 GTGCAATGTTCATATTGTCCCGA 59.623 43.478 0.00 0.00 39.62 5.14
650 669 4.355543 ACGTGCAATGTTCATATTGTCC 57.644 40.909 0.00 0.00 39.62 4.02
662 681 7.305590 GCAATATGAGTGAATTAACGTGCAATG 60.306 37.037 0.00 0.00 0.00 2.82
665 684 5.353956 AGCAATATGAGTGAATTAACGTGCA 59.646 36.000 0.00 0.00 0.00 4.57
669 688 7.575365 TGCATAGCAATATGAGTGAATTAACG 58.425 34.615 0.00 0.00 34.76 3.18
677 696 9.188588 CCTTTTAAATGCATAGCAATATGAGTG 57.811 33.333 0.00 0.00 43.62 3.51
734 773 3.741075 CGCAGATACCATTACAAGAGCCA 60.741 47.826 0.00 0.00 0.00 4.75
752 791 1.226802 CCGTCAGATCAGTCCGCAG 60.227 63.158 0.00 0.00 0.00 5.18
761 800 5.235186 CAGACCAATATTTGTCCGTCAGATC 59.765 44.000 14.37 0.00 0.00 2.75
764 803 4.253685 ACAGACCAATATTTGTCCGTCAG 58.746 43.478 14.37 4.77 0.00 3.51
778 817 1.543871 GCGTCCCCTAAAACAGACCAA 60.544 52.381 0.00 0.00 0.00 3.67
826 865 8.727910 GTCTCTTAATAACATTCCGAGGTTTTT 58.272 33.333 0.00 0.00 31.38 1.94
901 942 6.259829 GGCTACTAGTAGTACTGTAGTTGGAC 59.740 46.154 26.76 13.45 34.88 4.02
915 956 4.081087 TCCTTTGGCTTTGGCTACTAGTAG 60.081 45.833 23.25 23.25 38.73 2.57
918 959 3.350219 TCCTTTGGCTTTGGCTACTAG 57.650 47.619 0.00 0.00 38.73 2.57
921 962 2.607038 CGTTTCCTTTGGCTTTGGCTAC 60.607 50.000 0.00 0.00 38.73 3.58
923 964 0.389025 CGTTTCCTTTGGCTTTGGCT 59.611 50.000 0.00 0.00 38.73 4.75
924 965 0.599991 CCGTTTCCTTTGGCTTTGGC 60.600 55.000 0.00 0.00 37.82 4.52
925 966 0.033366 CCCGTTTCCTTTGGCTTTGG 59.967 55.000 0.00 0.00 0.00 3.28
926 967 1.036707 TCCCGTTTCCTTTGGCTTTG 58.963 50.000 0.00 0.00 0.00 2.77
927 968 1.783071 TTCCCGTTTCCTTTGGCTTT 58.217 45.000 0.00 0.00 0.00 3.51
928 969 2.009681 ATTCCCGTTTCCTTTGGCTT 57.990 45.000 0.00 0.00 0.00 4.35
929 970 2.891191 TATTCCCGTTTCCTTTGGCT 57.109 45.000 0.00 0.00 0.00 4.75
930 971 2.361119 GGATATTCCCGTTTCCTTTGGC 59.639 50.000 0.00 0.00 0.00 4.52
1047 1088 1.367471 CGAGCAACCTGTCACCAGA 59.633 57.895 0.00 0.00 41.50 3.86
1182 1223 1.876664 CACGTCGAGCTCCAGAAGA 59.123 57.895 8.47 0.00 0.00 2.87
1372 1413 4.025813 CCTCGCACAAAAAGAAAACAATGG 60.026 41.667 0.00 0.00 0.00 3.16
1430 1471 2.223829 ACCTTAGAGGACATCGCAATCG 60.224 50.000 0.07 0.00 37.67 3.34
1461 1502 3.455910 TCTGTCGGAATCCAGAATCCAAT 59.544 43.478 0.00 0.00 34.88 3.16
1477 1518 4.747540 TTGTTTCACCATGAATCTGTCG 57.252 40.909 0.00 0.00 36.11 4.35
1478 1519 5.464168 CCTTTGTTTCACCATGAATCTGTC 58.536 41.667 0.00 0.00 36.11 3.51
1517 1559 3.957497 AGAAAGAGGACAGTCGCAGATAT 59.043 43.478 0.00 0.00 40.67 1.63
1523 1565 5.668558 TTTAAAAGAAAGAGGACAGTCGC 57.331 39.130 0.00 0.00 0.00 5.19
1553 1595 1.737793 CAAGACGGCCTTATGGTGTTC 59.262 52.381 0.00 0.00 32.86 3.18
1572 1614 0.549902 TCCTCCCTTCCTTCATGGCA 60.550 55.000 0.00 0.00 35.26 4.92
1663 1712 1.760029 TGACAGCACACCACTGACTAA 59.240 47.619 0.00 0.00 38.55 2.24
1675 1724 5.627367 CGAATAAGCTAGATACTGACAGCAC 59.373 44.000 1.25 0.00 36.47 4.40
1700 1749 6.454186 GCCAATGTGATTCGTTAAATTTCAGC 60.454 38.462 0.00 0.00 0.00 4.26
1705 1754 7.095910 TGATTGCCAATGTGATTCGTTAAATT 58.904 30.769 0.00 0.00 0.00 1.82
1738 1787 2.615869 GCATCCTATACTAGCTGCTGC 58.384 52.381 13.43 7.62 40.05 5.25
1883 1933 3.275617 TGCCACTGGGACAACATATAC 57.724 47.619 0.00 0.00 38.70 1.47
1887 1937 1.412343 GTTTTGCCACTGGGACAACAT 59.588 47.619 12.42 0.00 38.70 2.71
1889 1939 1.111277 AGTTTTGCCACTGGGACAAC 58.889 50.000 9.93 9.93 38.70 3.32
1929 1982 5.422331 AGCAAGCACACTATACTTCTCCTAA 59.578 40.000 0.00 0.00 0.00 2.69
2072 2137 2.699846 TGGCCTTGCTGAATTGTTTTCT 59.300 40.909 3.32 0.00 0.00 2.52
2193 2262 6.842163 ACAGAAGCATTATAAAAGACCAACG 58.158 36.000 0.00 0.00 0.00 4.10
2276 2345 1.153509 AACTAATTCCGGACGGCGG 60.154 57.895 13.24 0.00 34.68 6.13
2278 2347 1.004595 GTCAACTAATTCCGGACGGC 58.995 55.000 1.83 0.00 34.68 5.68
2305 2374 5.126545 ACTGAAATGCGTCTAGGTACATACA 59.873 40.000 0.00 0.00 0.00 2.29
2321 2390 4.151335 GGATGTATCTAGCGCACTGAAATG 59.849 45.833 11.47 0.00 0.00 2.32
2332 2401 4.296690 ACGCTTAAACGGATGTATCTAGC 58.703 43.478 3.00 0.00 37.37 3.42
2333 2402 5.516996 TGACGCTTAAACGGATGTATCTAG 58.483 41.667 3.00 0.00 37.37 2.43
2334 2403 5.503662 TGACGCTTAAACGGATGTATCTA 57.496 39.130 3.00 0.00 37.37 1.98
2335 2404 4.380841 TGACGCTTAAACGGATGTATCT 57.619 40.909 3.00 0.00 37.37 1.98
2336 2405 4.565564 AGTTGACGCTTAAACGGATGTATC 59.434 41.667 3.00 0.00 37.37 2.24
2337 2406 4.501071 AGTTGACGCTTAAACGGATGTAT 58.499 39.130 3.00 0.00 37.37 2.29
2338 2407 3.916761 AGTTGACGCTTAAACGGATGTA 58.083 40.909 3.00 0.00 37.37 2.29
2339 2408 2.762745 AGTTGACGCTTAAACGGATGT 58.237 42.857 3.00 0.00 37.37 3.06
2340 2409 4.387862 ACTTAGTTGACGCTTAAACGGATG 59.612 41.667 3.00 0.00 37.37 3.51
2341 2410 4.387862 CACTTAGTTGACGCTTAAACGGAT 59.612 41.667 3.00 0.00 37.37 4.18
2342 2411 3.737266 CACTTAGTTGACGCTTAAACGGA 59.263 43.478 3.00 0.00 37.37 4.69
2343 2412 3.663493 GCACTTAGTTGACGCTTAAACGG 60.663 47.826 3.00 0.00 37.37 4.44
2344 2413 3.466836 GCACTTAGTTGACGCTTAAACG 58.533 45.455 0.00 0.00 39.50 3.60
2345 2414 3.466836 CGCACTTAGTTGACGCTTAAAC 58.533 45.455 0.00 0.00 0.00 2.01
2346 2415 2.096614 GCGCACTTAGTTGACGCTTAAA 60.097 45.455 14.33 0.00 45.71 1.52
2347 2416 1.458064 GCGCACTTAGTTGACGCTTAA 59.542 47.619 14.33 0.00 45.71 1.85
2348 2417 1.065358 GCGCACTTAGTTGACGCTTA 58.935 50.000 14.33 0.00 45.71 3.09
2349 2418 1.860078 GCGCACTTAGTTGACGCTT 59.140 52.632 14.33 0.00 45.71 4.68
2350 2419 3.550656 GCGCACTTAGTTGACGCT 58.449 55.556 14.33 0.00 45.71 5.07
2352 2421 2.257974 TCTAGCGCACTTAGTTGACG 57.742 50.000 11.47 0.00 0.00 4.35
2353 2422 4.669318 TGTATCTAGCGCACTTAGTTGAC 58.331 43.478 11.47 3.94 0.00 3.18
2354 2423 4.976224 TGTATCTAGCGCACTTAGTTGA 57.024 40.909 11.47 0.00 0.00 3.18
2355 2424 4.681942 GGATGTATCTAGCGCACTTAGTTG 59.318 45.833 11.47 0.00 0.00 3.16
2356 2425 4.556898 CGGATGTATCTAGCGCACTTAGTT 60.557 45.833 11.47 0.33 0.00 2.24
2357 2426 3.058155 CGGATGTATCTAGCGCACTTAGT 60.058 47.826 11.47 0.00 0.00 2.24
2358 2427 3.058155 ACGGATGTATCTAGCGCACTTAG 60.058 47.826 11.47 2.45 0.00 2.18
2359 2428 2.882761 ACGGATGTATCTAGCGCACTTA 59.117 45.455 11.47 0.00 0.00 2.24
2360 2429 1.681793 ACGGATGTATCTAGCGCACTT 59.318 47.619 11.47 0.00 0.00 3.16
2361 2430 1.319541 ACGGATGTATCTAGCGCACT 58.680 50.000 11.47 0.00 0.00 4.40
2362 2431 2.052157 GAACGGATGTATCTAGCGCAC 58.948 52.381 11.47 0.00 0.00 5.34
2363 2432 1.334689 CGAACGGATGTATCTAGCGCA 60.335 52.381 11.47 0.00 0.00 6.09
2364 2433 1.069432 TCGAACGGATGTATCTAGCGC 60.069 52.381 0.00 0.00 0.00 5.92
2365 2434 2.840673 CTCGAACGGATGTATCTAGCG 58.159 52.381 0.00 0.00 0.00 4.26
2366 2435 2.586900 GCTCGAACGGATGTATCTAGC 58.413 52.381 0.00 0.00 0.00 3.42
2367 2436 2.223611 ACGCTCGAACGGATGTATCTAG 59.776 50.000 13.42 0.00 37.37 2.43
2378 2447 2.027688 GGAATTAGTTGACGCTCGAACG 59.972 50.000 6.68 6.68 39.50 3.95
2382 2451 0.921347 CCGGAATTAGTTGACGCTCG 59.079 55.000 0.00 0.00 0.00 5.03
2411 2480 9.816354 ACAAATGCAGGTCCAAATATTAATTAC 57.184 29.630 0.00 0.00 0.00 1.89
2412 2481 9.814899 CACAAATGCAGGTCCAAATATTAATTA 57.185 29.630 0.00 0.00 0.00 1.40
2461 2551 4.081862 CCTCATTGTTCCTGCATGTGAAAT 60.082 41.667 0.00 0.00 0.00 2.17
2641 2731 7.359262 TCACTGTAACAATAATCCTTGAACG 57.641 36.000 0.00 0.00 0.00 3.95
2668 2758 5.617751 GCTTTACATTTAGTGGACAGCACAG 60.618 44.000 0.00 0.00 0.00 3.66
2706 2799 4.773323 ACCTTCAGATGCTTTAAGTTGC 57.227 40.909 0.00 0.00 0.00 4.17
2760 2853 9.995003 TTTTAAGAATGTATCCAAAGTTGCATT 57.005 25.926 0.00 0.00 32.66 3.56
2887 3136 9.871238 ACCAACAACATCTAATACTAACTACTG 57.129 33.333 0.00 0.00 0.00 2.74
2925 3174 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
2926 3175 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
2927 3176 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
2928 3177 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
2929 3178 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
2930 3179 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
2931 3180 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
2945 3194 8.919145 CCTAGTGGAATCTCTACAAAGACTTAT 58.081 37.037 0.00 0.00 34.57 1.73
2946 3195 7.894364 ACCTAGTGGAATCTCTACAAAGACTTA 59.106 37.037 0.00 0.00 37.04 2.24
2947 3196 6.726764 ACCTAGTGGAATCTCTACAAAGACTT 59.273 38.462 0.00 0.00 37.04 3.01
2948 3197 6.153680 CACCTAGTGGAATCTCTACAAAGACT 59.846 42.308 0.00 0.00 37.04 3.24
2949 3198 6.334202 CACCTAGTGGAATCTCTACAAAGAC 58.666 44.000 0.00 0.00 37.04 3.01
2950 3199 6.531503 CACCTAGTGGAATCTCTACAAAGA 57.468 41.667 0.00 0.00 37.04 2.52
2965 3214 4.942483 CCTCCGTATATAGTCCACCTAGTG 59.058 50.000 0.00 0.00 0.00 2.74
2966 3215 4.848660 TCCTCCGTATATAGTCCACCTAGT 59.151 45.833 0.00 0.00 0.00 2.57
2967 3216 5.432680 TCCTCCGTATATAGTCCACCTAG 57.567 47.826 0.00 0.00 0.00 3.02
2968 3217 5.848286 TTCCTCCGTATATAGTCCACCTA 57.152 43.478 0.00 0.00 0.00 3.08
2969 3218 4.736611 TTCCTCCGTATATAGTCCACCT 57.263 45.455 0.00 0.00 0.00 4.00
2970 3219 5.796424 TTTTCCTCCGTATATAGTCCACC 57.204 43.478 0.00 0.00 0.00 4.61
2971 3220 6.989659 TCATTTTCCTCCGTATATAGTCCAC 58.010 40.000 0.00 0.00 0.00 4.02
2972 3221 7.606135 TTCATTTTCCTCCGTATATAGTCCA 57.394 36.000 0.00 0.00 0.00 4.02
2973 3222 8.311836 TCATTCATTTTCCTCCGTATATAGTCC 58.688 37.037 0.00 0.00 0.00 3.85
2974 3223 9.706691 TTCATTCATTTTCCTCCGTATATAGTC 57.293 33.333 0.00 0.00 0.00 2.59
2979 3228 9.706691 GTAGATTCATTCATTTTCCTCCGTATA 57.293 33.333 0.00 0.00 0.00 1.47
2980 3229 8.210946 TGTAGATTCATTCATTTTCCTCCGTAT 58.789 33.333 0.00 0.00 0.00 3.06
2981 3230 7.494625 GTGTAGATTCATTCATTTTCCTCCGTA 59.505 37.037 0.00 0.00 0.00 4.02
2982 3231 6.316390 GTGTAGATTCATTCATTTTCCTCCGT 59.684 38.462 0.00 0.00 0.00 4.69
2983 3232 6.540189 AGTGTAGATTCATTCATTTTCCTCCG 59.460 38.462 0.00 0.00 0.00 4.63
2984 3233 7.872113 AGTGTAGATTCATTCATTTTCCTCC 57.128 36.000 0.00 0.00 0.00 4.30
3012 3261 8.576442 CCACATACGGATGTATATAGATGCATA 58.424 37.037 14.23 1.52 44.82 3.14
3013 3262 7.069950 ACCACATACGGATGTATATAGATGCAT 59.930 37.037 14.23 0.00 44.82 3.96
3014 3263 6.379988 ACCACATACGGATGTATATAGATGCA 59.620 38.462 14.23 0.00 44.82 3.96
3015 3264 6.806751 ACCACATACGGATGTATATAGATGC 58.193 40.000 14.23 0.00 44.82 3.91
3016 3265 8.466798 TGAACCACATACGGATGTATATAGATG 58.533 37.037 14.23 0.00 44.82 2.90
3017 3266 8.589701 TGAACCACATACGGATGTATATAGAT 57.410 34.615 14.23 0.00 44.82 1.98
3018 3267 8.589701 ATGAACCACATACGGATGTATATAGA 57.410 34.615 14.23 0.00 44.82 1.98
3019 3268 9.952188 CTATGAACCACATACGGATGTATATAG 57.048 37.037 14.23 12.28 44.82 1.31
3020 3269 9.470399 ACTATGAACCACATACGGATGTATATA 57.530 33.333 14.23 7.10 44.82 0.86
3021 3270 8.251026 CACTATGAACCACATACGGATGTATAT 58.749 37.037 14.23 1.68 44.82 0.86
3022 3271 7.309560 CCACTATGAACCACATACGGATGTATA 60.310 40.741 14.23 6.48 44.82 1.47
3023 3272 6.455647 CACTATGAACCACATACGGATGTAT 58.544 40.000 14.23 5.54 44.82 2.29
3024 3273 5.221362 CCACTATGAACCACATACGGATGTA 60.221 44.000 14.23 0.00 44.82 2.29
3026 3275 4.058124 CCACTATGAACCACATACGGATG 58.942 47.826 5.94 5.94 40.07 3.51
3027 3276 3.964688 TCCACTATGAACCACATACGGAT 59.035 43.478 0.00 0.00 40.07 4.18
3028 3277 3.367321 TCCACTATGAACCACATACGGA 58.633 45.455 0.00 0.00 40.07 4.69
3029 3278 3.812156 TCCACTATGAACCACATACGG 57.188 47.619 0.00 0.00 40.07 4.02
3030 3279 5.601662 AGATTCCACTATGAACCACATACG 58.398 41.667 0.00 0.00 40.07 3.06
3031 3280 6.821388 AGAGATTCCACTATGAACCACATAC 58.179 40.000 0.00 0.00 40.07 2.39
3032 3281 7.563556 TGTAGAGATTCCACTATGAACCACATA 59.436 37.037 0.00 0.00 40.07 2.29
3033 3282 5.965033 AGAGATTCCACTATGAACCACAT 57.035 39.130 0.00 0.00 42.39 3.21
3034 3283 5.719563 TGTAGAGATTCCACTATGAACCACA 59.280 40.000 0.00 0.00 0.00 4.17
3035 3284 6.222038 TGTAGAGATTCCACTATGAACCAC 57.778 41.667 0.00 0.00 0.00 4.16
3036 3285 6.867519 TTGTAGAGATTCCACTATGAACCA 57.132 37.500 0.00 0.00 0.00 3.67
3037 3286 7.492994 GTCTTTGTAGAGATTCCACTATGAACC 59.507 40.741 0.00 0.00 0.00 3.62
3038 3287 8.254508 AGTCTTTGTAGAGATTCCACTATGAAC 58.745 37.037 0.00 0.00 0.00 3.18
3039 3288 8.367660 AGTCTTTGTAGAGATTCCACTATGAA 57.632 34.615 0.00 0.00 0.00 2.57
3040 3289 7.962995 AGTCTTTGTAGAGATTCCACTATGA 57.037 36.000 0.00 0.00 0.00 2.15
3041 3290 9.522804 GTAAGTCTTTGTAGAGATTCCACTATG 57.477 37.037 0.00 0.00 0.00 2.23
3042 3291 9.256228 TGTAAGTCTTTGTAGAGATTCCACTAT 57.744 33.333 0.00 0.00 0.00 2.12
3043 3292 8.645814 TGTAAGTCTTTGTAGAGATTCCACTA 57.354 34.615 0.00 0.00 0.00 2.74
3044 3293 7.540474 TGTAAGTCTTTGTAGAGATTCCACT 57.460 36.000 0.00 0.00 0.00 4.00
3045 3294 8.779354 AATGTAAGTCTTTGTAGAGATTCCAC 57.221 34.615 0.00 0.00 0.00 4.02
3051 3300 9.924650 GTTCCTAAATGTAAGTCTTTGTAGAGA 57.075 33.333 0.00 0.00 0.00 3.10
3052 3301 8.861101 CGTTCCTAAATGTAAGTCTTTGTAGAG 58.139 37.037 0.00 0.00 0.00 2.43
3053 3302 7.816031 CCGTTCCTAAATGTAAGTCTTTGTAGA 59.184 37.037 0.00 0.00 0.00 2.59
3054 3303 7.816031 TCCGTTCCTAAATGTAAGTCTTTGTAG 59.184 37.037 0.00 0.00 0.00 2.74
3055 3304 7.669427 TCCGTTCCTAAATGTAAGTCTTTGTA 58.331 34.615 0.00 0.00 0.00 2.41
3056 3305 6.527423 TCCGTTCCTAAATGTAAGTCTTTGT 58.473 36.000 0.00 0.00 0.00 2.83
3057 3306 6.092259 CCTCCGTTCCTAAATGTAAGTCTTTG 59.908 42.308 0.00 0.00 0.00 2.77
3058 3307 6.171213 CCTCCGTTCCTAAATGTAAGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
3059 3308 5.338137 CCCTCCGTTCCTAAATGTAAGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
3060 3309 4.161754 CCCTCCGTTCCTAAATGTAAGTCT 59.838 45.833 0.00 0.00 0.00 3.24
3061 3310 4.161001 TCCCTCCGTTCCTAAATGTAAGTC 59.839 45.833 0.00 0.00 0.00 3.01
3062 3311 4.098894 TCCCTCCGTTCCTAAATGTAAGT 58.901 43.478 0.00 0.00 0.00 2.24
3063 3312 4.161754 ACTCCCTCCGTTCCTAAATGTAAG 59.838 45.833 0.00 0.00 0.00 2.34
3064 3313 4.098894 ACTCCCTCCGTTCCTAAATGTAA 58.901 43.478 0.00 0.00 0.00 2.41
3065 3314 3.716431 ACTCCCTCCGTTCCTAAATGTA 58.284 45.455 0.00 0.00 0.00 2.29
3066 3315 2.547990 ACTCCCTCCGTTCCTAAATGT 58.452 47.619 0.00 0.00 0.00 2.71
3067 3316 4.957684 ATACTCCCTCCGTTCCTAAATG 57.042 45.455 0.00 0.00 0.00 2.32
3068 3317 6.210984 GTGATATACTCCCTCCGTTCCTAAAT 59.789 42.308 0.00 0.00 0.00 1.40
3069 3318 5.537674 GTGATATACTCCCTCCGTTCCTAAA 59.462 44.000 0.00 0.00 0.00 1.85
3070 3319 5.075493 GTGATATACTCCCTCCGTTCCTAA 58.925 45.833 0.00 0.00 0.00 2.69
3071 3320 4.105217 TGTGATATACTCCCTCCGTTCCTA 59.895 45.833 0.00 0.00 0.00 2.94
3072 3321 3.117246 TGTGATATACTCCCTCCGTTCCT 60.117 47.826 0.00 0.00 0.00 3.36
3073 3322 3.228453 TGTGATATACTCCCTCCGTTCC 58.772 50.000 0.00 0.00 0.00 3.62
3074 3323 4.583489 TCTTGTGATATACTCCCTCCGTTC 59.417 45.833 0.00 0.00 0.00 3.95
3075 3324 4.543689 TCTTGTGATATACTCCCTCCGTT 58.456 43.478 0.00 0.00 0.00 4.44
3076 3325 4.180377 TCTTGTGATATACTCCCTCCGT 57.820 45.455 0.00 0.00 0.00 4.69
3077 3326 5.946972 ACTATCTTGTGATATACTCCCTCCG 59.053 44.000 0.00 0.00 34.95 4.63
3078 3327 7.784470 AACTATCTTGTGATATACTCCCTCC 57.216 40.000 0.00 0.00 34.95 4.30
3135 3384 8.267183 TGCCATTGAATTCTTAGATCTTACAGA 58.733 33.333 0.00 0.00 0.00 3.41
3137 3386 8.677300 GTTGCCATTGAATTCTTAGATCTTACA 58.323 33.333 0.00 0.00 0.00 2.41
3209 3458 1.609932 CGTGCAAGAACATGACATGC 58.390 50.000 15.49 8.67 37.52 4.06
3263 3512 8.585471 AAGGAAGAAATGCATATTCAAAGAGA 57.415 30.769 17.89 0.00 0.00 3.10
3286 3535 8.251383 TCTACCAAGTTAGGATGGAAGATAAG 57.749 38.462 0.00 0.00 39.12 1.73
3409 3666 9.438291 CAGTCGTTTATTTGATCATATTTGTCC 57.562 33.333 3.88 0.00 0.00 4.02
3415 3672 8.964476 ACTTCCAGTCGTTTATTTGATCATAT 57.036 30.769 0.00 0.00 0.00 1.78
3562 3819 1.062525 GCCATAAGCGAACCAAGCG 59.937 57.895 0.00 0.00 40.04 4.68
3583 3840 4.343526 AGGATCGTCAGAATAGCAGTGAAT 59.656 41.667 0.00 0.00 0.00 2.57
3668 3925 2.159184 TCACGCAAGAGCTATCTTCCAG 60.159 50.000 0.00 0.00 44.15 3.86
3669 3926 1.824852 TCACGCAAGAGCTATCTTCCA 59.175 47.619 0.00 0.00 44.15 3.53
3819 4081 4.020128 GGAGGACTTTACACTTGGACTGAT 60.020 45.833 0.00 0.00 0.00 2.90
3893 4155 4.330944 TGACAGTAACACGAGAAACCAT 57.669 40.909 0.00 0.00 0.00 3.55
3964 4226 1.070445 CAATTTCCTGCCAGGCACAAA 59.930 47.619 11.22 12.98 34.61 2.83
4002 4264 2.431782 TGTAAACCCAGACGTATAGGCC 59.568 50.000 0.00 0.00 0.00 5.19
4019 4281 1.886222 GCAGCACCCACAATCCTGTAA 60.886 52.381 0.00 0.00 33.22 2.41
4032 4294 0.524862 CTTCAGGATTGTGCAGCACC 59.475 55.000 23.06 7.40 32.73 5.01
4062 4324 5.104817 CCCATTATGGCAGGAAATTGAGTTT 60.105 40.000 5.57 0.00 35.79 2.66
4063 4325 4.406649 CCCATTATGGCAGGAAATTGAGTT 59.593 41.667 5.57 0.00 35.79 3.01
4064 4326 3.962718 CCCATTATGGCAGGAAATTGAGT 59.037 43.478 5.57 0.00 35.79 3.41
4065 4327 3.962718 ACCCATTATGGCAGGAAATTGAG 59.037 43.478 5.57 0.00 35.79 3.02
4104 4373 5.395657 CCTGAATAGGCTGTAATCACACTCA 60.396 44.000 0.00 0.00 37.25 3.41
4113 4382 4.854173 TGCAAATCCTGAATAGGCTGTAA 58.146 39.130 0.00 0.00 44.22 2.41
4123 4392 5.104360 AGACTTATAGGCTGCAAATCCTGAA 60.104 40.000 10.99 5.62 27.71 3.02
4125 4394 4.514441 CAGACTTATAGGCTGCAAATCCTG 59.486 45.833 10.99 0.00 45.62 3.86
4154 4423 1.559831 AAAAGAAACGTTGCTGCTGC 58.440 45.000 10.24 8.89 40.20 5.25
4160 4429 1.930503 CCACCCAAAAAGAAACGTTGC 59.069 47.619 0.00 0.00 0.00 4.17
4161 4430 3.512033 TCCACCCAAAAAGAAACGTTG 57.488 42.857 0.00 0.00 0.00 4.10
4174 4443 3.355378 CAGCATTTCTGTAATCCACCCA 58.645 45.455 0.00 0.00 38.02 4.51
4183 4452 7.656412 TGTTTCAATTTAGCAGCATTTCTGTA 58.344 30.769 0.00 0.00 44.66 2.74
4200 4473 4.098960 CAGGAGCAGCCATATTGTTTCAAT 59.901 41.667 0.00 0.80 40.02 2.57
4201 4474 3.444742 CAGGAGCAGCCATATTGTTTCAA 59.555 43.478 0.00 0.00 40.02 2.69
4206 4479 3.106738 GCAGGAGCAGCCATATTGT 57.893 52.632 0.00 0.00 41.58 2.71
4227 4501 4.761739 AGCGAAGATTTCAGGATGTTTGAA 59.238 37.500 0.00 0.00 37.40 2.69
4279 4553 1.271488 GGTGATTACCAAACCGGGTCA 60.271 52.381 6.32 0.00 46.71 4.02
4280 4554 1.456296 GGTGATTACCAAACCGGGTC 58.544 55.000 6.32 0.00 46.71 4.46
4281 4555 3.656457 GGTGATTACCAAACCGGGT 57.344 52.632 6.32 0.00 46.71 5.28
4291 4565 0.539986 TTCCGGGAGCTGGTGATTAC 59.460 55.000 0.00 0.00 0.00 1.89
4292 4566 1.416401 GATTCCGGGAGCTGGTGATTA 59.584 52.381 0.00 0.00 0.00 1.75
4293 4567 0.181350 GATTCCGGGAGCTGGTGATT 59.819 55.000 0.00 0.00 0.00 2.57
4294 4568 1.700042 GGATTCCGGGAGCTGGTGAT 61.700 60.000 0.00 0.00 0.00 3.06
4295 4569 2.367202 GGATTCCGGGAGCTGGTGA 61.367 63.158 0.00 0.00 0.00 4.02
4296 4570 2.190578 GGATTCCGGGAGCTGGTG 59.809 66.667 0.00 0.00 0.00 4.17
4297 4571 3.470888 CGGATTCCGGGAGCTGGT 61.471 66.667 17.53 0.00 44.15 4.00
4314 4588 1.633852 CTGCAGTTTCCTCGCTCAGC 61.634 60.000 5.25 0.00 0.00 4.26
4315 4589 1.633852 GCTGCAGTTTCCTCGCTCAG 61.634 60.000 16.64 0.00 0.00 3.35
4316 4590 1.669115 GCTGCAGTTTCCTCGCTCA 60.669 57.895 16.64 0.00 0.00 4.26
4317 4591 1.357991 GAGCTGCAGTTTCCTCGCTC 61.358 60.000 16.64 10.04 37.35 5.03
4318 4592 1.375268 GAGCTGCAGTTTCCTCGCT 60.375 57.895 16.64 3.74 0.00 4.93
4319 4593 2.394563 GGAGCTGCAGTTTCCTCGC 61.395 63.158 23.97 7.10 0.00 5.03
4320 4594 2.097038 CGGAGCTGCAGTTTCCTCG 61.097 63.158 26.47 16.16 0.00 4.63
4321 4595 3.882025 CGGAGCTGCAGTTTCCTC 58.118 61.111 26.47 19.16 0.00 3.71
4340 4614 0.036577 CAACTCCACTCCCAGAGCTG 60.037 60.000 0.00 0.00 33.18 4.24
4341 4615 0.472734 ACAACTCCACTCCCAGAGCT 60.473 55.000 0.00 0.00 33.18 4.09
4342 4616 0.321122 CACAACTCCACTCCCAGAGC 60.321 60.000 0.00 0.00 33.18 4.09
4343 4617 0.322975 CCACAACTCCACTCCCAGAG 59.677 60.000 0.00 0.00 36.16 3.35
4344 4618 0.105194 TCCACAACTCCACTCCCAGA 60.105 55.000 0.00 0.00 0.00 3.86
4345 4619 0.322975 CTCCACAACTCCACTCCCAG 59.677 60.000 0.00 0.00 0.00 4.45
4346 4620 1.768684 GCTCCACAACTCCACTCCCA 61.769 60.000 0.00 0.00 0.00 4.37
4347 4621 1.003233 GCTCCACAACTCCACTCCC 60.003 63.158 0.00 0.00 0.00 4.30
4348 4622 1.374758 CGCTCCACAACTCCACTCC 60.375 63.158 0.00 0.00 0.00 3.85
4349 4623 1.374758 CCGCTCCACAACTCCACTC 60.375 63.158 0.00 0.00 0.00 3.51
4350 4624 1.821061 CTCCGCTCCACAACTCCACT 61.821 60.000 0.00 0.00 0.00 4.00
4351 4625 1.374758 CTCCGCTCCACAACTCCAC 60.375 63.158 0.00 0.00 0.00 4.02
4352 4626 3.059982 CTCCGCTCCACAACTCCA 58.940 61.111 0.00 0.00 0.00 3.86
4353 4627 2.435059 GCTCCGCTCCACAACTCC 60.435 66.667 0.00 0.00 0.00 3.85
4354 4628 2.811317 CGCTCCGCTCCACAACTC 60.811 66.667 0.00 0.00 0.00 3.01
4355 4629 3.303135 TCGCTCCGCTCCACAACT 61.303 61.111 0.00 0.00 0.00 3.16
4356 4630 3.112709 GTCGCTCCGCTCCACAAC 61.113 66.667 0.00 0.00 0.00 3.32
4357 4631 4.717629 CGTCGCTCCGCTCCACAA 62.718 66.667 0.00 0.00 0.00 3.33
4375 4649 0.105039 GAGACATAGGCCCTGTTCGG 59.895 60.000 9.76 0.00 0.00 4.30
4376 4650 0.249073 CGAGACATAGGCCCTGTTCG 60.249 60.000 9.76 14.63 0.00 3.95
4377 4651 0.530870 GCGAGACATAGGCCCTGTTC 60.531 60.000 9.76 8.42 0.00 3.18
4378 4652 1.522569 GCGAGACATAGGCCCTGTT 59.477 57.895 9.76 1.28 0.00 3.16
4379 4653 2.786495 CGCGAGACATAGGCCCTGT 61.786 63.158 0.00 8.25 0.00 4.00
4380 4654 1.452953 TACGCGAGACATAGGCCCTG 61.453 60.000 15.93 0.00 0.00 4.45
4381 4655 0.539901 ATACGCGAGACATAGGCCCT 60.540 55.000 15.93 0.00 0.00 5.19
4382 4656 1.132643 CTATACGCGAGACATAGGCCC 59.867 57.143 15.93 0.00 0.00 5.80
4383 4657 1.467713 GCTATACGCGAGACATAGGCC 60.468 57.143 15.93 0.00 0.00 5.19
4384 4658 1.897641 GCTATACGCGAGACATAGGC 58.102 55.000 15.93 1.91 0.00 3.93
4395 4669 1.560292 GCTGCAACTCGCTATACGC 59.440 57.895 0.00 0.00 43.23 4.42
4396 4670 1.840061 CGCTGCAACTCGCTATACG 59.160 57.895 0.00 0.00 43.06 3.06
4397 4671 1.560292 GCGCTGCAACTCGCTATAC 59.440 57.895 17.02 0.00 46.92 1.47
4398 4672 4.012554 GCGCTGCAACTCGCTATA 57.987 55.556 17.02 0.00 46.92 1.31
4403 4677 2.724708 GAGTCTGCGCTGCAACTCG 61.725 63.158 16.58 0.00 38.41 4.18
4404 4678 2.724708 CGAGTCTGCGCTGCAACTC 61.725 63.158 19.74 19.74 40.11 3.01
4405 4679 2.736236 CGAGTCTGCGCTGCAACT 60.736 61.111 9.73 8.76 38.41 3.16
4418 4692 3.966026 GCGGTTGCTAGACGCGAGT 62.966 63.158 15.93 0.58 43.98 4.18
4419 4693 3.248171 GCGGTTGCTAGACGCGAG 61.248 66.667 15.93 0.00 43.98 5.03
4423 4697 1.518572 ATTCGGCGGTTGCTAGACG 60.519 57.895 7.21 0.00 42.25 4.18
4424 4698 1.429148 CCATTCGGCGGTTGCTAGAC 61.429 60.000 7.21 0.00 42.25 2.59
4425 4699 1.153449 CCATTCGGCGGTTGCTAGA 60.153 57.895 7.21 0.00 42.25 2.43
4426 4700 2.180204 CCCATTCGGCGGTTGCTAG 61.180 63.158 7.21 0.00 42.25 3.42
4427 4701 2.124901 CCCATTCGGCGGTTGCTA 60.125 61.111 7.21 0.00 42.25 3.49
4450 4724 1.379044 GGAATGTGGTCCCTGCTGG 60.379 63.158 1.89 1.89 0.00 4.85
4451 4725 0.038744 AAGGAATGTGGTCCCTGCTG 59.961 55.000 0.00 0.00 38.59 4.41
4452 4726 0.038744 CAAGGAATGTGGTCCCTGCT 59.961 55.000 0.00 0.00 38.59 4.24
4453 4727 0.038166 TCAAGGAATGTGGTCCCTGC 59.962 55.000 0.00 0.00 38.59 4.85
4454 4728 1.952367 GCTCAAGGAATGTGGTCCCTG 60.952 57.143 0.00 0.00 38.59 4.45
4455 4729 0.329596 GCTCAAGGAATGTGGTCCCT 59.670 55.000 0.00 0.00 38.59 4.20
4456 4730 0.038166 TGCTCAAGGAATGTGGTCCC 59.962 55.000 0.00 0.00 38.59 4.46
4457 4731 1.168714 GTGCTCAAGGAATGTGGTCC 58.831 55.000 0.00 0.00 38.03 4.46
4458 4732 2.079925 GAGTGCTCAAGGAATGTGGTC 58.920 52.381 0.00 0.00 0.00 4.02
4459 4733 1.701847 AGAGTGCTCAAGGAATGTGGT 59.298 47.619 1.82 0.00 0.00 4.16
4460 4734 2.486472 AGAGTGCTCAAGGAATGTGG 57.514 50.000 1.82 0.00 0.00 4.17
4461 4735 4.037208 ACAAAAGAGTGCTCAAGGAATGTG 59.963 41.667 1.82 0.00 0.00 3.21
4462 4736 4.210331 ACAAAAGAGTGCTCAAGGAATGT 58.790 39.130 1.82 0.00 0.00 2.71
4463 4737 4.320788 GGACAAAAGAGTGCTCAAGGAATG 60.321 45.833 1.82 0.00 0.00 2.67
4464 4738 3.823304 GGACAAAAGAGTGCTCAAGGAAT 59.177 43.478 1.82 0.00 0.00 3.01
4465 4739 3.117888 AGGACAAAAGAGTGCTCAAGGAA 60.118 43.478 1.82 0.00 35.00 3.36
4466 4740 2.439507 AGGACAAAAGAGTGCTCAAGGA 59.560 45.455 1.82 0.00 35.00 3.36
4467 4741 2.856222 AGGACAAAAGAGTGCTCAAGG 58.144 47.619 1.82 0.00 35.00 3.61
4468 4742 4.907879 AAAGGACAAAAGAGTGCTCAAG 57.092 40.909 1.82 0.00 39.41 3.02
4469 4743 4.462483 ACAAAAGGACAAAAGAGTGCTCAA 59.538 37.500 1.82 0.00 39.41 3.02
4470 4744 4.016444 ACAAAAGGACAAAAGAGTGCTCA 58.984 39.130 1.82 0.00 39.41 4.26
4471 4745 4.639135 ACAAAAGGACAAAAGAGTGCTC 57.361 40.909 0.00 0.00 39.41 4.26
4472 4746 5.405935 AAACAAAAGGACAAAAGAGTGCT 57.594 34.783 0.00 0.00 42.32 4.40
4473 4747 6.480524 AAAAACAAAAGGACAAAAGAGTGC 57.519 33.333 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.