Multiple sequence alignment - TraesCS2B01G339900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G339900 chr2B 100.000 5057 0 0 1 5057 485316999 485311943 0.000000e+00 9339.0
1 TraesCS2B01G339900 chr2B 94.960 754 38 0 1 754 800953917 800954670 0.000000e+00 1182.0
2 TraesCS2B01G339900 chr2B 90.327 796 74 1 4265 5057 705332985 705333780 0.000000e+00 1040.0
3 TraesCS2B01G339900 chr2B 91.126 755 66 1 1 755 634159339 634160092 0.000000e+00 1022.0
4 TraesCS2B01G339900 chr2B 89.322 796 82 2 4265 5057 670831880 670831085 0.000000e+00 996.0
5 TraesCS2B01G339900 chr2B 85.126 753 109 3 4 754 800688210 800687459 0.000000e+00 767.0
6 TraesCS2B01G339900 chr2B 84.031 764 105 17 2 754 50732808 50732051 0.000000e+00 719.0
7 TraesCS2B01G339900 chr2B 89.796 490 40 8 3782 4265 705332551 705333036 2.000000e-173 619.0
8 TraesCS2B01G339900 chr2B 87.627 493 50 7 3782 4270 670832309 670831824 3.420000e-156 562.0
9 TraesCS2B01G339900 chr2B 73.846 975 216 28 1064 2026 383378746 383377799 8.060000e-93 351.0
10 TraesCS2B01G339900 chr2B 71.689 1042 253 23 992 2009 383649244 383648221 8.400000e-63 252.0
11 TraesCS2B01G339900 chr2B 95.556 45 2 0 756 800 675402569 675402525 7.020000e-09 73.1
12 TraesCS2B01G339900 chr2D 96.126 2917 90 8 860 3765 411959846 411956942 0.000000e+00 4739.0
13 TraesCS2B01G339900 chr2D 73.947 1021 219 33 1019 2026 315501311 315500325 8.000000e-98 368.0
14 TraesCS2B01G339900 chr2D 71.497 1042 252 32 992 2009 315987066 315986046 2.350000e-58 237.0
15 TraesCS2B01G339900 chr2D 94.667 75 3 1 2728 2801 411958044 411957970 1.150000e-21 115.0
16 TraesCS2B01G339900 chr2D 100.000 39 0 0 756 794 242913507 242913545 7.020000e-09 73.1
17 TraesCS2B01G339900 chr2D 97.561 41 0 1 754 794 5097022 5097061 9.080000e-08 69.4
18 TraesCS2B01G339900 chr2D 95.122 41 2 0 806 846 411959938 411959898 1.180000e-06 65.8
19 TraesCS2B01G339900 chr2A 95.791 2922 103 7 855 3764 579447027 579444114 0.000000e+00 4697.0
20 TraesCS2B01G339900 chr2A 88.428 795 85 6 4265 5054 200895593 200896385 0.000000e+00 952.0
21 TraesCS2B01G339900 chr2A 87.815 755 89 3 2 755 728729273 728728521 0.000000e+00 881.0
22 TraesCS2B01G339900 chr2A 87.879 495 46 12 3782 4267 403881312 403881801 2.040000e-158 569.0
23 TraesCS2B01G339900 chr2A 73.549 1051 226 39 992 2026 419451852 419452866 2.240000e-93 353.0
24 TraesCS2B01G339900 chr2A 71.920 1047 248 28 989 2009 419182339 419183365 3.880000e-66 263.0
25 TraesCS2B01G339900 chr2A 96.000 75 2 1 2728 2801 579445218 579445144 2.470000e-23 121.0
26 TraesCS2B01G339900 chr5B 96.552 754 25 1 1 754 478671629 478672381 0.000000e+00 1247.0
27 TraesCS2B01G339900 chr5B 85.061 743 90 19 2 733 684979175 684979907 0.000000e+00 737.0
28 TraesCS2B01G339900 chr3B 92.785 790 57 0 4265 5054 764337357 764338146 0.000000e+00 1144.0
29 TraesCS2B01G339900 chr3B 93.878 490 25 3 3782 4267 764336922 764337410 0.000000e+00 734.0
30 TraesCS2B01G339900 chr3B 92.668 491 29 5 3782 4267 689017944 689018432 0.000000e+00 701.0
31 TraesCS2B01G339900 chr1B 92.434 793 60 0 4265 5057 280721111 280720319 0.000000e+00 1133.0
32 TraesCS2B01G339900 chr1B 91.093 494 36 7 3782 4270 280721545 280721055 0.000000e+00 662.0
33 TraesCS2B01G339900 chr1B 83.060 732 114 10 2 727 31716528 31717255 0.000000e+00 656.0
34 TraesCS2B01G339900 chr4B 92.405 790 60 0 4265 5054 203953970 203954759 0.000000e+00 1127.0
35 TraesCS2B01G339900 chr4B 91.047 793 71 0 4265 5057 463349887 463349095 0.000000e+00 1072.0
36 TraesCS2B01G339900 chr4B 91.233 787 57 2 4271 5057 150979187 150978413 0.000000e+00 1061.0
37 TraesCS2B01G339900 chr4B 92.653 490 33 3 3782 4270 463350318 463349831 0.000000e+00 702.0
38 TraesCS2B01G339900 chr4B 91.304 483 35 5 3782 4258 203953533 203954014 0.000000e+00 652.0
39 TraesCS2B01G339900 chr4B 87.800 500 44 12 3782 4270 150979630 150979137 2.040000e-158 569.0
40 TraesCS2B01G339900 chr7B 88.191 796 85 5 4265 5054 400230534 400231326 0.000000e+00 941.0
41 TraesCS2B01G339900 chr7B 71.566 830 181 48 1065 1868 688553471 688552671 1.870000e-39 174.0
42 TraesCS2B01G339900 chr7B 97.561 41 1 0 758 798 62459787 62459827 2.530000e-08 71.3
43 TraesCS2B01G339900 chr5A 89.125 754 79 2 2 754 705385423 705384672 0.000000e+00 935.0
44 TraesCS2B01G339900 chr7D 84.010 763 105 16 2 754 2604679 2605434 0.000000e+00 717.0
45 TraesCS2B01G339900 chr1D 97.674 43 1 0 756 798 298448255 298448213 1.950000e-09 75.0
46 TraesCS2B01G339900 chr3A 100.000 39 0 0 756 794 194798519 194798557 7.020000e-09 73.1
47 TraesCS2B01G339900 chr3A 89.796 49 4 1 756 804 194791155 194791108 1.520000e-05 62.1
48 TraesCS2B01G339900 chr4A 97.436 39 1 0 756 794 329170908 329170870 3.270000e-07 67.6
49 TraesCS2B01G339900 chr4A 94.872 39 2 0 756 794 615184949 615184987 1.520000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G339900 chr2B 485311943 485316999 5056 True 9339.000000 9339 100.0000 1 5057 1 chr2B.!!$R4 5056
1 TraesCS2B01G339900 chr2B 800953917 800954670 753 False 1182.000000 1182 94.9600 1 754 1 chr2B.!!$F2 753
2 TraesCS2B01G339900 chr2B 634159339 634160092 753 False 1022.000000 1022 91.1260 1 755 1 chr2B.!!$F1 754
3 TraesCS2B01G339900 chr2B 705332551 705333780 1229 False 829.500000 1040 90.0615 3782 5057 2 chr2B.!!$F3 1275
4 TraesCS2B01G339900 chr2B 670831085 670832309 1224 True 779.000000 996 88.4745 3782 5057 2 chr2B.!!$R7 1275
5 TraesCS2B01G339900 chr2B 800687459 800688210 751 True 767.000000 767 85.1260 4 754 1 chr2B.!!$R6 750
6 TraesCS2B01G339900 chr2B 50732051 50732808 757 True 719.000000 719 84.0310 2 754 1 chr2B.!!$R1 752
7 TraesCS2B01G339900 chr2B 383377799 383378746 947 True 351.000000 351 73.8460 1064 2026 1 chr2B.!!$R2 962
8 TraesCS2B01G339900 chr2B 383648221 383649244 1023 True 252.000000 252 71.6890 992 2009 1 chr2B.!!$R3 1017
9 TraesCS2B01G339900 chr2D 411956942 411959938 2996 True 1639.933333 4739 95.3050 806 3765 3 chr2D.!!$R3 2959
10 TraesCS2B01G339900 chr2D 315500325 315501311 986 True 368.000000 368 73.9470 1019 2026 1 chr2D.!!$R1 1007
11 TraesCS2B01G339900 chr2D 315986046 315987066 1020 True 237.000000 237 71.4970 992 2009 1 chr2D.!!$R2 1017
12 TraesCS2B01G339900 chr2A 579444114 579447027 2913 True 2409.000000 4697 95.8955 855 3764 2 chr2A.!!$R2 2909
13 TraesCS2B01G339900 chr2A 200895593 200896385 792 False 952.000000 952 88.4280 4265 5054 1 chr2A.!!$F1 789
14 TraesCS2B01G339900 chr2A 728728521 728729273 752 True 881.000000 881 87.8150 2 755 1 chr2A.!!$R1 753
15 TraesCS2B01G339900 chr2A 419451852 419452866 1014 False 353.000000 353 73.5490 992 2026 1 chr2A.!!$F4 1034
16 TraesCS2B01G339900 chr2A 419182339 419183365 1026 False 263.000000 263 71.9200 989 2009 1 chr2A.!!$F3 1020
17 TraesCS2B01G339900 chr5B 478671629 478672381 752 False 1247.000000 1247 96.5520 1 754 1 chr5B.!!$F1 753
18 TraesCS2B01G339900 chr5B 684979175 684979907 732 False 737.000000 737 85.0610 2 733 1 chr5B.!!$F2 731
19 TraesCS2B01G339900 chr3B 764336922 764338146 1224 False 939.000000 1144 93.3315 3782 5054 2 chr3B.!!$F2 1272
20 TraesCS2B01G339900 chr1B 280720319 280721545 1226 True 897.500000 1133 91.7635 3782 5057 2 chr1B.!!$R1 1275
21 TraesCS2B01G339900 chr1B 31716528 31717255 727 False 656.000000 656 83.0600 2 727 1 chr1B.!!$F1 725
22 TraesCS2B01G339900 chr4B 203953533 203954759 1226 False 889.500000 1127 91.8545 3782 5054 2 chr4B.!!$F1 1272
23 TraesCS2B01G339900 chr4B 463349095 463350318 1223 True 887.000000 1072 91.8500 3782 5057 2 chr4B.!!$R2 1275
24 TraesCS2B01G339900 chr4B 150978413 150979630 1217 True 815.000000 1061 89.5165 3782 5057 2 chr4B.!!$R1 1275
25 TraesCS2B01G339900 chr7B 400230534 400231326 792 False 941.000000 941 88.1910 4265 5054 1 chr7B.!!$F2 789
26 TraesCS2B01G339900 chr5A 705384672 705385423 751 True 935.000000 935 89.1250 2 754 1 chr5A.!!$R1 752
27 TraesCS2B01G339900 chr7D 2604679 2605434 755 False 717.000000 717 84.0100 2 754 1 chr7D.!!$F1 752

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
776 785 0.247934 GCCGCGCAAGTTTATGTACC 60.248 55.0 8.75 0.0 41.68 3.34 F
777 786 0.375803 CCGCGCAAGTTTATGTACCC 59.624 55.0 8.75 0.0 41.68 3.69 F
1215 1266 0.537188 ATCTCAACTTCACCGGCGAT 59.463 50.0 9.30 0.0 0.00 4.58 F
1606 1670 0.888619 ACGAGAACTCAAGATCCGCA 59.111 50.0 0.00 0.0 0.00 5.69 F
2068 2134 0.031857 CACAGGCATGGCGTTTGAAA 59.968 50.0 14.30 0.0 0.00 2.69 F
3449 3526 0.529378 CCCTCATTTCAGGCACAAGC 59.471 55.0 0.00 0.0 41.10 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2049 2115 0.031857 TTTCAAACGCCATGCCTGTG 59.968 50.0 0.0 0.00 0.00 3.66 R
2050 2116 0.314935 CTTTCAAACGCCATGCCTGT 59.685 50.0 0.0 0.00 0.00 4.00 R
2068 2134 2.021042 TCCCAAATGAGATACCCCTCCT 60.021 50.0 0.0 0.00 32.32 3.69 R
3450 3527 1.252215 TGCAACCTGATGGGCATGTG 61.252 55.0 0.0 0.00 39.10 3.21 R
3772 3849 0.251165 CCCACCAACCACAGGTTAGG 60.251 60.0 0.4 8.17 45.01 2.69 R
4258 4350 0.248417 CGTCTCCAGCATCTCGTGAG 60.248 60.0 0.0 0.00 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 1.941999 GCAGTGGAATCTTGGGCAGC 61.942 60.000 0.00 0.00 0.00 5.25
238 239 3.016474 GCGTCCAGCTTGAAGTCGC 62.016 63.158 5.69 5.69 44.04 5.19
438 439 2.288025 GGGTGGGCTGTCGGAGTTA 61.288 63.158 0.00 0.00 0.00 2.24
526 527 1.385206 AGGGAGGAAGGATGGCTCC 60.385 63.158 0.00 0.00 42.43 4.70
544 545 0.804989 CCGGTGCCAAGAAGAATGAC 59.195 55.000 0.00 0.00 0.00 3.06
581 583 4.469586 TGTGTATTACAGAGGAAGGCATGA 59.530 41.667 0.00 0.00 33.42 3.07
755 764 1.817209 TTGGCCGTTTTCCAACACC 59.183 52.632 0.00 0.00 38.57 4.16
756 765 1.677637 TTGGCCGTTTTCCAACACCC 61.678 55.000 0.00 0.00 38.57 4.61
757 766 2.333581 GCCGTTTTCCAACACCCG 59.666 61.111 0.00 0.00 32.54 5.28
758 767 2.333581 CCGTTTTCCAACACCCGC 59.666 61.111 0.00 0.00 32.54 6.13
759 768 2.333581 CGTTTTCCAACACCCGCC 59.666 61.111 0.00 0.00 32.54 6.13
760 769 2.333581 GTTTTCCAACACCCGCCG 59.666 61.111 0.00 0.00 32.54 6.46
761 770 3.597728 TTTTCCAACACCCGCCGC 61.598 61.111 0.00 0.00 0.00 6.53
770 779 4.992511 ACCCGCCGCGCAAGTTTA 62.993 61.111 8.75 0.00 41.68 2.01
771 780 3.505184 CCCGCCGCGCAAGTTTAT 61.505 61.111 8.75 0.00 41.68 1.40
772 781 2.277247 CCGCCGCGCAAGTTTATG 60.277 61.111 8.75 0.00 41.68 1.90
773 782 2.478746 CGCCGCGCAAGTTTATGT 59.521 55.556 8.75 0.00 41.68 2.29
774 783 1.697772 CCGCCGCGCAAGTTTATGTA 61.698 55.000 8.75 0.00 41.68 2.29
775 784 0.585519 CGCCGCGCAAGTTTATGTAC 60.586 55.000 8.75 0.00 41.68 2.90
776 785 0.247934 GCCGCGCAAGTTTATGTACC 60.248 55.000 8.75 0.00 41.68 3.34
777 786 0.375803 CCGCGCAAGTTTATGTACCC 59.624 55.000 8.75 0.00 41.68 3.69
778 787 0.375803 CGCGCAAGTTTATGTACCCC 59.624 55.000 8.75 0.00 41.68 4.95
779 788 1.455248 GCGCAAGTTTATGTACCCCA 58.545 50.000 0.30 0.00 41.68 4.96
780 789 1.400494 GCGCAAGTTTATGTACCCCAG 59.600 52.381 0.30 0.00 41.68 4.45
781 790 2.014128 CGCAAGTTTATGTACCCCAGG 58.986 52.381 0.00 0.00 0.00 4.45
782 791 2.617021 CGCAAGTTTATGTACCCCAGGT 60.617 50.000 0.00 0.00 40.16 4.00
783 792 2.752903 GCAAGTTTATGTACCCCAGGTG 59.247 50.000 0.00 0.00 36.19 4.00
784 793 3.812882 GCAAGTTTATGTACCCCAGGTGT 60.813 47.826 0.00 0.00 36.19 4.16
785 794 4.566070 GCAAGTTTATGTACCCCAGGTGTA 60.566 45.833 0.00 0.00 36.19 2.90
786 795 5.562635 CAAGTTTATGTACCCCAGGTGTAA 58.437 41.667 0.00 0.00 36.19 2.41
787 796 6.184789 CAAGTTTATGTACCCCAGGTGTAAT 58.815 40.000 0.00 0.00 36.19 1.89
788 797 6.397217 AGTTTATGTACCCCAGGTGTAATT 57.603 37.500 0.00 0.00 36.19 1.40
789 798 7.513560 AGTTTATGTACCCCAGGTGTAATTA 57.486 36.000 0.00 0.00 36.19 1.40
790 799 7.931046 AGTTTATGTACCCCAGGTGTAATTAA 58.069 34.615 0.00 0.00 36.19 1.40
791 800 7.830697 AGTTTATGTACCCCAGGTGTAATTAAC 59.169 37.037 0.00 0.00 36.19 2.01
792 801 7.513560 TTATGTACCCCAGGTGTAATTAACT 57.486 36.000 0.00 0.00 36.19 2.24
793 802 5.425196 TGTACCCCAGGTGTAATTAACTC 57.575 43.478 0.00 0.00 36.19 3.01
794 803 3.622166 ACCCCAGGTGTAATTAACTCG 57.378 47.619 0.00 0.00 32.98 4.18
795 804 3.175594 ACCCCAGGTGTAATTAACTCGA 58.824 45.455 0.00 0.00 32.98 4.04
796 805 3.197116 ACCCCAGGTGTAATTAACTCGAG 59.803 47.826 11.84 11.84 32.98 4.04
797 806 3.449737 CCCCAGGTGTAATTAACTCGAGA 59.550 47.826 21.68 0.00 0.00 4.04
798 807 4.081309 CCCCAGGTGTAATTAACTCGAGAA 60.081 45.833 21.68 3.89 0.00 2.87
799 808 5.484715 CCCAGGTGTAATTAACTCGAGAAA 58.515 41.667 21.68 13.21 0.00 2.52
800 809 5.935789 CCCAGGTGTAATTAACTCGAGAAAA 59.064 40.000 21.68 12.83 0.00 2.29
801 810 6.428771 CCCAGGTGTAATTAACTCGAGAAAAA 59.571 38.462 21.68 10.21 0.00 1.94
835 844 8.012957 AGAAAGAGACTTGTTTTCACTCTCTA 57.987 34.615 0.00 0.00 40.49 2.43
843 852 6.486993 ACTTGTTTTCACTCTCTAATTCACCC 59.513 38.462 0.00 0.00 0.00 4.61
846 855 5.825593 TTTCACTCTCTAATTCACCCAGT 57.174 39.130 0.00 0.00 0.00 4.00
848 857 3.515502 TCACTCTCTAATTCACCCAGTGG 59.484 47.826 0.63 0.63 33.87 4.00
849 858 3.515502 CACTCTCTAATTCACCCAGTGGA 59.484 47.826 11.95 0.00 33.87 4.02
851 860 2.501723 TCTCTAATTCACCCAGTGGAGC 59.498 50.000 11.95 0.00 33.87 4.70
852 861 2.503356 CTCTAATTCACCCAGTGGAGCT 59.497 50.000 11.95 0.00 33.87 4.09
853 862 2.237143 TCTAATTCACCCAGTGGAGCTG 59.763 50.000 11.95 2.81 44.63 4.24
858 905 2.608988 CCCAGTGGAGCTGTCCCT 60.609 66.667 11.95 0.00 43.15 4.20
876 924 0.849540 CTACCCCAAACCCTTCCCCT 60.850 60.000 0.00 0.00 0.00 4.79
883 931 1.167033 AAACCCTTCCCCTTCATGGT 58.833 50.000 0.00 0.00 0.00 3.55
1009 1057 2.693864 CCTCCTCCATGGGGCACT 60.694 66.667 13.02 0.00 34.02 4.40
1215 1266 0.537188 ATCTCAACTTCACCGGCGAT 59.463 50.000 9.30 0.00 0.00 4.58
1239 1290 2.367202 CCACCACCGCATACTCCCT 61.367 63.158 0.00 0.00 0.00 4.20
1606 1670 0.888619 ACGAGAACTCAAGATCCGCA 59.111 50.000 0.00 0.00 0.00 5.69
1827 1892 2.419990 CCACTGGACGGATGCTTATGAA 60.420 50.000 0.00 0.00 0.00 2.57
1923 1989 6.480763 ACATTATTTGGATGACTACACACCA 58.519 36.000 0.00 0.00 35.35 4.17
1930 1996 2.535012 TGACTACACACCAAATCGCA 57.465 45.000 0.00 0.00 0.00 5.10
2049 2115 6.034044 GTGCTAGCAAGTCAATATATAGCGAC 59.966 42.308 21.29 0.00 37.55 5.19
2050 2116 6.093404 GCTAGCAAGTCAATATATAGCGACA 58.907 40.000 10.63 0.00 0.00 4.35
2068 2134 0.031857 CACAGGCATGGCGTTTGAAA 59.968 50.000 14.30 0.00 0.00 2.69
2104 2170 7.236225 TCTCATTTGGGATATCTGAGAATAGCA 59.764 37.037 15.57 0.00 39.37 3.49
2377 2448 4.039973 TGTGACTTCCTACAAACCTACAGG 59.960 45.833 0.00 0.00 42.17 4.00
2446 2517 4.974645 AACATTACACTCTTGACCCTGA 57.025 40.909 0.00 0.00 0.00 3.86
2603 2674 6.368779 TTTATATACTTCATCCTTCCGGGG 57.631 41.667 0.00 0.00 35.33 5.73
2607 2678 2.271777 ACTTCATCCTTCCGGGGTTTA 58.728 47.619 0.00 0.00 35.33 2.01
2699 2776 6.408858 TGCATTCATACTCGAAAGAAGTTC 57.591 37.500 0.00 0.00 41.32 3.01
2878 2955 4.141688 GGGACTTATAAACCCAGACAGAGG 60.142 50.000 17.50 0.00 42.81 3.69
3001 3078 2.789409 ACCCTGCTCCAAAGTATGTC 57.211 50.000 0.00 0.00 0.00 3.06
3122 3199 3.399440 TGGGGCATGTGCTTTTTAAAG 57.601 42.857 4.84 0.00 41.70 1.85
3134 3211 7.657336 TGTGCTTTTTAAAGAAGGTTCCATAG 58.343 34.615 6.41 0.00 38.28 2.23
3211 3288 5.414454 GCACAATACCTGAGGATTTGTGTAA 59.586 40.000 31.48 3.67 43.55 2.41
3219 3296 8.193953 ACCTGAGGATTTGTGTAAATTTTGAT 57.806 30.769 4.99 0.00 36.66 2.57
3220 3297 9.308000 ACCTGAGGATTTGTGTAAATTTTGATA 57.692 29.630 4.99 0.00 36.66 2.15
3309 3386 6.316390 AGCTTCAAACTAATTTCCAGGTATCG 59.684 38.462 0.00 0.00 0.00 2.92
3449 3526 0.529378 CCCTCATTTCAGGCACAAGC 59.471 55.000 0.00 0.00 41.10 4.01
3524 3601 6.071320 AGGAACTCATATTAAATTGCCTCCC 58.929 40.000 0.00 0.00 0.00 4.30
3663 3740 4.225267 CCTAAAAGGAAGGCTGAGGAGTTA 59.775 45.833 0.00 0.00 37.67 2.24
3740 3817 2.753452 TCAAGTATTCTCGAGAAGGCGT 59.247 45.455 29.89 20.10 37.48 5.68
3743 3820 3.276857 AGTATTCTCGAGAAGGCGTACA 58.723 45.455 29.89 7.80 37.48 2.90
3747 3824 4.361827 CGAGAAGGCGTACACTCG 57.638 61.111 13.09 13.09 44.10 4.18
3765 3842 1.416401 TCGACAAGGCTCCAACTTTCT 59.584 47.619 0.00 0.00 0.00 2.52
3766 3843 1.532868 CGACAAGGCTCCAACTTTCTG 59.467 52.381 0.00 0.00 0.00 3.02
3767 3844 2.576615 GACAAGGCTCCAACTTTCTGT 58.423 47.619 0.00 0.00 0.00 3.41
3768 3845 3.740115 GACAAGGCTCCAACTTTCTGTA 58.260 45.455 0.00 0.00 0.00 2.74
3769 3846 4.134563 GACAAGGCTCCAACTTTCTGTAA 58.865 43.478 0.00 0.00 0.00 2.41
3770 3847 3.883489 ACAAGGCTCCAACTTTCTGTAAC 59.117 43.478 0.00 0.00 0.00 2.50
3771 3848 3.857157 AGGCTCCAACTTTCTGTAACA 57.143 42.857 0.00 0.00 0.00 2.41
3772 3849 3.477530 AGGCTCCAACTTTCTGTAACAC 58.522 45.455 0.00 0.00 0.00 3.32
3773 3850 2.552743 GGCTCCAACTTTCTGTAACACC 59.447 50.000 0.00 0.00 0.00 4.16
3774 3851 3.477530 GCTCCAACTTTCTGTAACACCT 58.522 45.455 0.00 0.00 0.00 4.00
3775 3852 4.504340 GGCTCCAACTTTCTGTAACACCTA 60.504 45.833 0.00 0.00 0.00 3.08
3776 3853 5.061179 GCTCCAACTTTCTGTAACACCTAA 58.939 41.667 0.00 0.00 0.00 2.69
3777 3854 5.049612 GCTCCAACTTTCTGTAACACCTAAC 60.050 44.000 0.00 0.00 0.00 2.34
3778 3855 5.370679 TCCAACTTTCTGTAACACCTAACC 58.629 41.667 0.00 0.00 0.00 2.85
3779 3856 5.131475 TCCAACTTTCTGTAACACCTAACCT 59.869 40.000 0.00 0.00 0.00 3.50
3780 3857 5.238650 CCAACTTTCTGTAACACCTAACCTG 59.761 44.000 0.00 0.00 0.00 4.00
3784 3861 3.311091 TCTGTAACACCTAACCTGTGGT 58.689 45.455 0.00 0.00 38.05 4.16
3817 3894 2.113986 GCTGGCCAGACAAGTGGT 59.886 61.111 37.21 0.00 40.09 4.16
3893 3972 7.386299 GTGTGTTGATACTCTGAACTCTGAATT 59.614 37.037 0.00 0.00 0.00 2.17
3904 3983 3.244033 ACTCTGAATTCTTCCTCTGCG 57.756 47.619 7.05 0.00 0.00 5.18
3937 4021 2.040947 CCTTCCTCTCCAAGCTTTTCCT 59.959 50.000 0.00 0.00 0.00 3.36
3947 4034 1.134438 AGCTTTTCCTTCCCCCTCGT 61.134 55.000 0.00 0.00 0.00 4.18
3967 4054 0.113385 TCGATCTGGATCCTCTCCCC 59.887 60.000 14.23 0.00 44.23 4.81
4086 4178 2.280524 CGGTGTGGTTTGCTCCGA 60.281 61.111 0.00 0.00 43.22 4.55
4156 4248 2.685999 GGCTCCTCCCAAGGCATT 59.314 61.111 0.00 0.00 43.02 3.56
4230 4322 0.390866 CAAGATGCTGGAGACGCTGT 60.391 55.000 0.00 0.00 0.00 4.40
4231 4323 0.390866 AAGATGCTGGAGACGCTGTG 60.391 55.000 0.00 0.00 0.00 3.66
4232 4324 2.435586 ATGCTGGAGACGCTGTGC 60.436 61.111 0.00 0.00 0.00 4.57
4243 4335 2.815211 GCTGTGCGCCAAGATCGA 60.815 61.111 4.18 0.00 0.00 3.59
4244 4336 3.084579 CTGTGCGCCAAGATCGAC 58.915 61.111 4.18 0.00 0.00 4.20
4245 4337 2.792290 CTGTGCGCCAAGATCGACG 61.792 63.158 4.18 0.00 0.00 5.12
4246 4338 2.506217 GTGCGCCAAGATCGACGA 60.506 61.111 4.18 0.00 0.00 4.20
4247 4339 1.878522 GTGCGCCAAGATCGACGAT 60.879 57.895 10.78 10.78 0.00 3.73
4248 4340 1.588932 TGCGCCAAGATCGACGATC 60.589 57.895 26.72 26.72 39.17 3.69
4249 4341 1.588932 GCGCCAAGATCGACGATCA 60.589 57.895 32.97 0.00 41.12 2.92
4250 4342 1.543941 GCGCCAAGATCGACGATCAG 61.544 60.000 32.97 25.09 41.12 2.90
4251 4343 0.029433 CGCCAAGATCGACGATCAGA 59.971 55.000 32.97 0.00 41.12 3.27
4252 4344 1.533965 CGCCAAGATCGACGATCAGAA 60.534 52.381 32.97 0.00 41.12 3.02
4253 4345 2.540515 GCCAAGATCGACGATCAGAAA 58.459 47.619 32.97 0.00 41.12 2.52
4254 4346 2.537625 GCCAAGATCGACGATCAGAAAG 59.462 50.000 32.97 19.76 41.12 2.62
4255 4347 2.537625 CCAAGATCGACGATCAGAAAGC 59.462 50.000 32.97 10.85 41.12 3.51
4256 4348 2.112475 AGATCGACGATCAGAAAGCG 57.888 50.000 32.97 0.00 41.12 4.68
4257 4349 1.124462 GATCGACGATCAGAAAGCGG 58.876 55.000 28.48 0.00 38.77 5.52
4258 4350 0.872021 ATCGACGATCAGAAAGCGGC 60.872 55.000 4.05 0.00 0.00 6.53
4259 4351 1.517257 CGACGATCAGAAAGCGGCT 60.517 57.895 0.00 0.00 0.00 5.52
4260 4352 1.475441 CGACGATCAGAAAGCGGCTC 61.475 60.000 1.45 0.00 0.00 4.70
4261 4353 0.458543 GACGATCAGAAAGCGGCTCA 60.459 55.000 1.45 0.00 0.00 4.26
4262 4354 0.737715 ACGATCAGAAAGCGGCTCAC 60.738 55.000 1.45 0.13 0.00 3.51
4281 4373 1.515020 GAGATGCTGGAGACGCTGT 59.485 57.895 0.00 0.00 0.00 4.40
4282 4374 0.805322 GAGATGCTGGAGACGCTGTG 60.805 60.000 0.00 0.00 0.00 3.66
4379 4471 4.212913 GAGATGCGCGGCCTCTCA 62.213 66.667 21.38 0.65 45.22 3.27
4403 4495 2.491621 CTCGATCTGACGCAGGCA 59.508 61.111 6.95 0.00 31.51 4.75
4596 4694 1.459455 CGATCATCGCCCACCTCTCT 61.459 60.000 0.00 0.00 31.14 3.10
4947 5045 2.520536 AAGCTCCTGCAACTCCGGT 61.521 57.895 0.00 0.00 42.74 5.28
5009 5107 0.608130 AGATGTACCACTTGCTCGCA 59.392 50.000 0.00 0.00 0.00 5.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 4.490319 CGGACGAACTTTACGATGTCATTG 60.490 45.833 0.00 0.00 34.70 2.82
117 118 4.717629 CTCGACCCGCGCACTCAA 62.718 66.667 8.75 0.00 40.61 3.02
526 527 0.443869 CGTCATTCTTCTTGGCACCG 59.556 55.000 0.00 0.00 0.00 4.94
544 545 9.463443 TCTGTAATACACACATTGAGATATTCG 57.537 33.333 0.00 0.00 32.33 3.34
581 583 4.691685 CGTGCTCTCTCGAGTATATAAGGT 59.308 45.833 13.13 0.00 39.53 3.50
592 594 4.467062 CTGCGCGTGCTCTCTCGA 62.467 66.667 23.16 0.00 43.34 4.04
755 764 1.697772 TACATAAACTTGCGCGGCGG 61.698 55.000 25.03 10.11 0.00 6.13
756 765 0.585519 GTACATAAACTTGCGCGGCG 60.586 55.000 19.62 19.62 0.00 6.46
757 766 0.247934 GGTACATAAACTTGCGCGGC 60.248 55.000 8.83 0.00 0.00 6.53
758 767 0.375803 GGGTACATAAACTTGCGCGG 59.624 55.000 8.83 0.00 0.00 6.46
759 768 0.375803 GGGGTACATAAACTTGCGCG 59.624 55.000 0.00 0.00 0.00 6.86
760 769 1.400494 CTGGGGTACATAAACTTGCGC 59.600 52.381 0.00 0.00 0.00 6.09
761 770 2.014128 CCTGGGGTACATAAACTTGCG 58.986 52.381 0.00 0.00 0.00 4.85
762 771 2.752903 CACCTGGGGTACATAAACTTGC 59.247 50.000 0.00 0.00 32.11 4.01
763 772 4.028993 ACACCTGGGGTACATAAACTTG 57.971 45.455 0.00 0.00 32.11 3.16
764 773 5.846528 TTACACCTGGGGTACATAAACTT 57.153 39.130 8.67 0.00 32.11 2.66
765 774 6.397217 AATTACACCTGGGGTACATAAACT 57.603 37.500 8.67 0.00 32.11 2.66
766 775 7.830697 AGTTAATTACACCTGGGGTACATAAAC 59.169 37.037 8.67 10.73 32.11 2.01
767 776 7.931046 AGTTAATTACACCTGGGGTACATAAA 58.069 34.615 8.67 0.00 32.11 1.40
768 777 7.513560 AGTTAATTACACCTGGGGTACATAA 57.486 36.000 8.67 8.32 32.11 1.90
769 778 6.183360 CGAGTTAATTACACCTGGGGTACATA 60.183 42.308 8.67 2.13 32.11 2.29
770 779 5.395990 CGAGTTAATTACACCTGGGGTACAT 60.396 44.000 8.67 3.16 32.11 2.29
771 780 4.081531 CGAGTTAATTACACCTGGGGTACA 60.082 45.833 8.67 0.88 32.11 2.90
772 781 4.160252 TCGAGTTAATTACACCTGGGGTAC 59.840 45.833 8.67 0.00 32.11 3.34
773 782 4.352009 TCGAGTTAATTACACCTGGGGTA 58.648 43.478 4.26 4.26 32.11 3.69
774 783 3.175594 TCGAGTTAATTACACCTGGGGT 58.824 45.455 6.88 6.88 35.62 4.95
775 784 3.449737 TCTCGAGTTAATTACACCTGGGG 59.550 47.826 13.13 0.00 0.00 4.96
776 785 4.730949 TCTCGAGTTAATTACACCTGGG 57.269 45.455 13.13 0.00 0.00 4.45
777 786 7.429636 TTTTTCTCGAGTTAATTACACCTGG 57.570 36.000 13.13 0.00 0.00 4.45
800 809 7.929941 AACAAGTCTCTTTCTCAGTCTTTTT 57.070 32.000 0.00 0.00 0.00 1.94
801 810 7.929941 AAACAAGTCTCTTTCTCAGTCTTTT 57.070 32.000 0.00 0.00 0.00 2.27
802 811 7.607991 TGAAAACAAGTCTCTTTCTCAGTCTTT 59.392 33.333 0.00 0.00 31.67 2.52
803 812 7.065204 GTGAAAACAAGTCTCTTTCTCAGTCTT 59.935 37.037 0.00 0.00 31.67 3.01
804 813 6.536941 GTGAAAACAAGTCTCTTTCTCAGTCT 59.463 38.462 0.00 0.00 31.67 3.24
835 844 3.658398 CAGCTCCACTGGGTGAATT 57.342 52.632 0.00 0.00 43.19 2.17
846 855 2.040606 GGGGTAGGGACAGCTCCA 59.959 66.667 0.00 0.00 38.52 3.86
848 857 0.035343 GTTTGGGGTAGGGACAGCTC 60.035 60.000 0.00 0.00 0.00 4.09
849 858 1.498176 GGTTTGGGGTAGGGACAGCT 61.498 60.000 0.00 0.00 0.00 4.24
851 860 0.845102 AGGGTTTGGGGTAGGGACAG 60.845 60.000 0.00 0.00 0.00 3.51
852 861 0.403750 AAGGGTTTGGGGTAGGGACA 60.404 55.000 0.00 0.00 0.00 4.02
853 862 0.330604 GAAGGGTTTGGGGTAGGGAC 59.669 60.000 0.00 0.00 0.00 4.46
858 905 0.405247 AAGGGGAAGGGTTTGGGGTA 60.405 55.000 0.00 0.00 0.00 3.69
876 924 1.643868 GAATGCGCCGTCACCATGAA 61.644 55.000 4.18 0.00 0.00 2.57
883 931 2.584970 GGATCGAATGCGCCGTCA 60.585 61.111 4.18 0.00 37.46 4.35
956 1004 1.221021 GGAGTACTGAAAGGGGGCG 59.779 63.158 0.00 0.00 39.30 6.13
1009 1057 3.224324 GCCGATCTCCCTACCGCA 61.224 66.667 0.00 0.00 0.00 5.69
1083 1134 1.808411 TAAGAACGTCGTCCGGTAGT 58.192 50.000 0.00 0.00 35.89 2.73
1089 1140 0.179156 TGCCGATAAGAACGTCGTCC 60.179 55.000 0.00 0.00 36.17 4.79
1606 1670 1.080638 TTACCAAGACCCCAGGCATT 58.919 50.000 0.00 0.00 0.00 3.56
1766 1831 1.197721 CTGAGATGTTTGCAACCGGTC 59.802 52.381 8.04 0.00 0.00 4.79
2049 2115 0.031857 TTTCAAACGCCATGCCTGTG 59.968 50.000 0.00 0.00 0.00 3.66
2050 2116 0.314935 CTTTCAAACGCCATGCCTGT 59.685 50.000 0.00 0.00 0.00 4.00
2068 2134 2.021042 TCCCAAATGAGATACCCCTCCT 60.021 50.000 0.00 0.00 32.32 3.69
2104 2170 5.503846 GCAAAACAAGTGAAAATTCGGCATT 60.504 36.000 0.00 0.00 0.00 3.56
2377 2448 4.396166 CAGGTATTGATGGTGACCTTTGTC 59.604 45.833 2.11 0.00 40.41 3.18
2407 2478 2.375174 TGTTAGGGAGCCTTGTCATGTT 59.625 45.455 0.00 0.00 34.61 2.71
2603 2674 7.696872 GCTCAAAATTCGAGGGAAACTATAAAC 59.303 37.037 6.90 0.00 35.40 2.01
2607 2678 4.640647 GGCTCAAAATTCGAGGGAAACTAT 59.359 41.667 6.90 0.00 35.40 2.12
2678 2755 7.588143 ACAGAACTTCTTTCGAGTATGAATG 57.412 36.000 0.00 0.00 39.47 2.67
2878 2955 6.398918 TCTCTGGCAATTCAAGTACTACTTC 58.601 40.000 0.00 0.00 36.03 3.01
3122 3199 3.948473 GGCTTCCTTTCTATGGAACCTTC 59.052 47.826 0.00 0.00 38.53 3.46
3134 3211 5.984695 AATTGACCTTAAGGCTTCCTTTC 57.015 39.130 21.92 10.00 41.69 2.62
3174 3251 4.056050 GGTATTGTGCTAGTGATAACCCG 58.944 47.826 0.00 0.00 0.00 5.28
3219 3296 8.325787 AGAGTGGTTTGTATGGACATTACATTA 58.674 33.333 0.00 0.00 34.86 1.90
3220 3297 7.175104 AGAGTGGTTTGTATGGACATTACATT 58.825 34.615 0.00 0.00 34.86 2.71
3221 3298 6.721318 AGAGTGGTTTGTATGGACATTACAT 58.279 36.000 0.00 0.00 34.86 2.29
3222 3299 6.013725 AGAGAGTGGTTTGTATGGACATTACA 60.014 38.462 0.00 0.00 34.86 2.41
3223 3300 6.407202 AGAGAGTGGTTTGTATGGACATTAC 58.593 40.000 0.00 0.00 34.86 1.89
3424 3501 2.024590 GCCTGAAATGAGGGGCATGC 62.025 60.000 9.90 9.90 43.59 4.06
3449 3526 1.952102 GCAACCTGATGGGCATGTGG 61.952 60.000 0.00 0.00 39.10 4.17
3450 3527 1.252215 TGCAACCTGATGGGCATGTG 61.252 55.000 0.00 0.00 39.10 3.21
3483 3560 3.764237 TCCTCGCTTTTCCAGTTTAGT 57.236 42.857 0.00 0.00 0.00 2.24
3524 3601 7.839907 TCCAAACCCATTGATTTCTATTTCTG 58.160 34.615 0.00 0.00 41.85 3.02
3663 3740 1.584724 AGCCTAGTAACATGTGGCCT 58.415 50.000 17.91 8.55 44.19 5.19
3740 3817 1.000506 GTTGGAGCCTTGTCGAGTGTA 59.999 52.381 0.00 0.00 0.00 2.90
3743 3820 0.759346 AAGTTGGAGCCTTGTCGAGT 59.241 50.000 0.00 0.00 0.00 4.18
3747 3824 2.576615 ACAGAAAGTTGGAGCCTTGTC 58.423 47.619 0.00 0.00 0.00 3.18
3765 3842 3.433882 CCAACCACAGGTTAGGTGTTACA 60.434 47.826 0.40 0.00 45.01 2.41
3766 3843 3.143728 CCAACCACAGGTTAGGTGTTAC 58.856 50.000 0.40 0.00 45.01 2.50
3767 3844 2.778850 ACCAACCACAGGTTAGGTGTTA 59.221 45.455 16.74 0.00 45.01 2.41
3768 3845 1.567175 ACCAACCACAGGTTAGGTGTT 59.433 47.619 16.74 0.46 45.01 3.32
3769 3846 1.133915 CACCAACCACAGGTTAGGTGT 60.134 52.381 25.63 11.63 45.01 4.16
3770 3847 1.604604 CACCAACCACAGGTTAGGTG 58.395 55.000 23.30 23.30 45.01 4.00
3771 3848 0.476771 CCACCAACCACAGGTTAGGT 59.523 55.000 13.62 13.62 45.01 3.08
3772 3849 0.251165 CCCACCAACCACAGGTTAGG 60.251 60.000 0.40 8.17 45.01 2.69
3773 3850 0.893727 GCCCACCAACCACAGGTTAG 60.894 60.000 0.40 0.00 45.01 2.34
3774 3851 1.151908 GCCCACCAACCACAGGTTA 59.848 57.895 0.40 0.00 45.01 2.85
3776 3853 4.218686 GGCCCACCAACCACAGGT 62.219 66.667 0.00 0.00 40.85 4.00
3777 3854 4.994756 GGGCCCACCAACCACAGG 62.995 72.222 19.95 0.00 39.85 4.00
3817 3894 0.393944 TTTAACACCACCCACGCACA 60.394 50.000 0.00 0.00 0.00 4.57
3858 3936 3.585862 AGTATCAACACACACGTGATCC 58.414 45.455 25.01 0.00 46.80 3.36
3893 3972 1.043816 GGATGGATCGCAGAGGAAGA 58.956 55.000 0.00 0.00 43.63 2.87
3904 3983 1.132560 AGAGGAAGGAGGGGATGGATC 60.133 57.143 0.00 0.00 0.00 3.36
3937 4021 1.327690 CCAGATCGAACGAGGGGGAA 61.328 60.000 2.94 0.00 0.00 3.97
4086 4178 0.534203 ACGGATTTTGTGTGGCTCGT 60.534 50.000 0.00 0.00 0.00 4.18
4230 4322 1.588932 GATCGTCGATCTTGGCGCA 60.589 57.895 24.71 0.00 36.27 6.09
4231 4323 1.543941 CTGATCGTCGATCTTGGCGC 61.544 60.000 29.87 0.00 39.56 6.53
4232 4324 0.029433 TCTGATCGTCGATCTTGGCG 59.971 55.000 29.87 15.88 39.56 5.69
4233 4325 2.209838 TTCTGATCGTCGATCTTGGC 57.790 50.000 29.87 9.85 39.56 4.52
4234 4326 2.537625 GCTTTCTGATCGTCGATCTTGG 59.462 50.000 29.87 20.80 39.56 3.61
4235 4327 2.215138 CGCTTTCTGATCGTCGATCTTG 59.785 50.000 29.87 22.87 39.56 3.02
4236 4328 2.455032 CGCTTTCTGATCGTCGATCTT 58.545 47.619 29.87 1.42 39.56 2.40
4237 4329 1.268794 CCGCTTTCTGATCGTCGATCT 60.269 52.381 29.87 2.21 39.56 2.75
4238 4330 1.124462 CCGCTTTCTGATCGTCGATC 58.876 55.000 25.13 25.13 39.31 3.69
4239 4331 0.872021 GCCGCTTTCTGATCGTCGAT 60.872 55.000 7.63 7.63 0.00 3.59
4240 4332 1.516386 GCCGCTTTCTGATCGTCGA 60.516 57.895 0.00 0.00 0.00 4.20
4241 4333 1.475441 GAGCCGCTTTCTGATCGTCG 61.475 60.000 0.00 0.00 0.00 5.12
4242 4334 0.458543 TGAGCCGCTTTCTGATCGTC 60.459 55.000 0.00 0.00 0.00 4.20
4243 4335 0.737715 GTGAGCCGCTTTCTGATCGT 60.738 55.000 0.00 0.00 0.00 3.73
4244 4336 1.746727 CGTGAGCCGCTTTCTGATCG 61.747 60.000 0.00 0.00 0.00 3.69
4245 4337 0.458543 TCGTGAGCCGCTTTCTGATC 60.459 55.000 0.00 0.00 36.19 2.92
4246 4338 0.459237 CTCGTGAGCCGCTTTCTGAT 60.459 55.000 0.00 0.00 36.19 2.90
4247 4339 1.080501 CTCGTGAGCCGCTTTCTGA 60.081 57.895 0.00 0.00 36.19 3.27
4248 4340 0.459237 ATCTCGTGAGCCGCTTTCTG 60.459 55.000 0.00 0.00 36.19 3.02
4249 4341 0.459237 CATCTCGTGAGCCGCTTTCT 60.459 55.000 0.00 0.00 36.19 2.52
4250 4342 2.002127 CATCTCGTGAGCCGCTTTC 58.998 57.895 0.00 0.00 36.19 2.62
4251 4343 2.103042 GCATCTCGTGAGCCGCTTT 61.103 57.895 0.00 0.00 36.19 3.51
4252 4344 2.510238 GCATCTCGTGAGCCGCTT 60.510 61.111 0.00 0.00 36.19 4.68
4253 4345 3.456365 AGCATCTCGTGAGCCGCT 61.456 61.111 0.00 0.00 36.19 5.52
4254 4346 3.260483 CAGCATCTCGTGAGCCGC 61.260 66.667 0.00 3.11 36.19 6.53
4255 4347 2.584418 CCAGCATCTCGTGAGCCG 60.584 66.667 0.00 0.00 38.13 5.52
4256 4348 1.227205 CTCCAGCATCTCGTGAGCC 60.227 63.158 0.00 0.00 0.00 4.70
4257 4349 0.527385 GTCTCCAGCATCTCGTGAGC 60.527 60.000 0.00 0.00 0.00 4.26
4258 4350 0.248417 CGTCTCCAGCATCTCGTGAG 60.248 60.000 0.00 0.00 0.00 3.51
4259 4351 1.803289 CGTCTCCAGCATCTCGTGA 59.197 57.895 0.00 0.00 0.00 4.35
4260 4352 1.875813 GCGTCTCCAGCATCTCGTG 60.876 63.158 0.00 0.00 34.19 4.35
4261 4353 2.049185 AGCGTCTCCAGCATCTCGT 61.049 57.895 0.00 0.00 37.01 4.18
4262 4354 1.588403 CAGCGTCTCCAGCATCTCG 60.588 63.158 0.00 0.00 37.01 4.04
4263 4355 0.805322 CACAGCGTCTCCAGCATCTC 60.805 60.000 0.00 0.00 37.01 2.75
4281 4373 1.588932 GATCGTCGATCTTGGCGCA 60.589 57.895 24.71 0.00 36.27 6.09
4282 4374 1.543941 CTGATCGTCGATCTTGGCGC 61.544 60.000 29.87 0.00 39.56 6.53
4379 4471 2.492090 GTCAGATCGAGCTGCCGT 59.508 61.111 25.45 0.00 35.86 5.68
4403 4495 3.102985 CGCGTGAGATCGAGGTCT 58.897 61.111 0.00 0.00 0.00 3.85
4449 4544 4.742201 CGTGGTGACCGAGCCTGG 62.742 72.222 0.00 0.00 0.00 4.45
4877 4975 0.970937 ACTCCTCCAGAATCGCCGAA 60.971 55.000 0.00 0.00 0.00 4.30
4947 5045 1.666553 CAGCGACGGTGCCTGTTTA 60.667 57.895 14.78 0.00 34.65 2.01
5009 5107 2.607187 GTGTTGATTGACGGATCGAGT 58.393 47.619 0.00 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.