Multiple sequence alignment - TraesCS2B01G337700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G337700 chr2B 100.000 2423 0 0 1 2423 482708927 482711349 0.000000e+00 4475
1 TraesCS2B01G337700 chr2B 91.993 537 29 9 1 524 792150131 792150666 0.000000e+00 741
2 TraesCS2B01G337700 chr2A 91.457 1311 69 17 511 1792 546342543 546343839 0.000000e+00 1760
3 TraesCS2B01G337700 chr2D 92.282 1218 56 15 511 1704 406732624 406733827 0.000000e+00 1694
4 TraesCS2B01G337700 chr2D 91.503 612 41 7 1815 2423 406733829 406734432 0.000000e+00 832
5 TraesCS2B01G337700 chr2D 92.495 533 26 7 1 520 598652905 598653436 0.000000e+00 750
6 TraesCS2B01G337700 chr2D 85.141 747 76 21 727 1449 406695195 406695930 0.000000e+00 732
7 TraesCS2B01G337700 chr2D 75.444 338 69 7 2009 2342 37400073 37399746 4.170000e-33 152
8 TraesCS2B01G337700 chr4B 93.462 520 25 6 1 514 668748784 668749300 0.000000e+00 763
9 TraesCS2B01G337700 chr3B 93.143 525 24 8 1 514 813154003 813154526 0.000000e+00 760
10 TraesCS2B01G337700 chr7D 92.830 530 21 11 1 514 70148935 70149463 0.000000e+00 752
11 TraesCS2B01G337700 chr1D 92.720 522 26 8 1 514 466478989 466478472 0.000000e+00 743
12 TraesCS2B01G337700 chr7B 92.366 524 30 7 1 517 639081003 639081523 0.000000e+00 737
13 TraesCS2B01G337700 chr7B 91.636 538 35 7 1 534 38919177 38918646 0.000000e+00 736
14 TraesCS2B01G337700 chr4A 92.015 526 30 9 1 521 444548595 444549113 0.000000e+00 728


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G337700 chr2B 482708927 482711349 2422 False 4475 4475 100.0000 1 2423 1 chr2B.!!$F1 2422
1 TraesCS2B01G337700 chr2B 792150131 792150666 535 False 741 741 91.9930 1 524 1 chr2B.!!$F2 523
2 TraesCS2B01G337700 chr2A 546342543 546343839 1296 False 1760 1760 91.4570 511 1792 1 chr2A.!!$F1 1281
3 TraesCS2B01G337700 chr2D 406732624 406734432 1808 False 1263 1694 91.8925 511 2423 2 chr2D.!!$F3 1912
4 TraesCS2B01G337700 chr2D 598652905 598653436 531 False 750 750 92.4950 1 520 1 chr2D.!!$F2 519
5 TraesCS2B01G337700 chr2D 406695195 406695930 735 False 732 732 85.1410 727 1449 1 chr2D.!!$F1 722
6 TraesCS2B01G337700 chr4B 668748784 668749300 516 False 763 763 93.4620 1 514 1 chr4B.!!$F1 513
7 TraesCS2B01G337700 chr3B 813154003 813154526 523 False 760 760 93.1430 1 514 1 chr3B.!!$F1 513
8 TraesCS2B01G337700 chr7D 70148935 70149463 528 False 752 752 92.8300 1 514 1 chr7D.!!$F1 513
9 TraesCS2B01G337700 chr1D 466478472 466478989 517 True 743 743 92.7200 1 514 1 chr1D.!!$R1 513
10 TraesCS2B01G337700 chr7B 639081003 639081523 520 False 737 737 92.3660 1 517 1 chr7B.!!$F1 516
11 TraesCS2B01G337700 chr7B 38918646 38919177 531 True 736 736 91.6360 1 534 1 chr7B.!!$R1 533
12 TraesCS2B01G337700 chr4A 444548595 444549113 518 False 728 728 92.0150 1 521 1 chr4A.!!$F1 520

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
307 339 1.134037 GGAGAGAGACGCCTTAGGAGA 60.134 57.143 9.42 0.0 35.57 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1542 1623 0.03759 AAATGTAGTCCAGCGGCCAA 59.962 50.0 2.24 0.0 0.0 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
136 138 2.789779 CGACCCGGATTGCAAATAAACG 60.790 50.000 0.73 3.96 0.00 3.60
139 141 1.135257 CCGGATTGCAAATAAACGCCA 60.135 47.619 1.71 0.00 0.00 5.69
262 290 2.614057 GAGAAAGCGAGAGAGAGAGAGG 59.386 54.545 0.00 0.00 0.00 3.69
263 291 2.238646 AGAAAGCGAGAGAGAGAGAGGA 59.761 50.000 0.00 0.00 0.00 3.71
306 338 1.314730 GGAGAGAGACGCCTTAGGAG 58.685 60.000 0.69 0.00 35.57 3.69
307 339 1.134037 GGAGAGAGACGCCTTAGGAGA 60.134 57.143 9.42 0.00 35.57 3.71
483 522 7.865706 AAGAGTGTGTGTTATGTTTTCTCTT 57.134 32.000 0.00 0.00 35.72 2.85
484 523 7.865706 AGAGTGTGTGTTATGTTTTCTCTTT 57.134 32.000 0.00 0.00 0.00 2.52
489 528 7.163682 GTGTGTGTTATGTTTTCTCTTTCGTTC 59.836 37.037 0.00 0.00 0.00 3.95
533 573 9.138062 TGCTAGTTTAATAAAAATGCATGTGTG 57.862 29.630 0.00 0.00 28.84 3.82
553 593 4.161377 TGTGCTACTATTGATGTACAGGCA 59.839 41.667 0.33 0.00 0.00 4.75
555 595 5.235186 GTGCTACTATTGATGTACAGGCAAG 59.765 44.000 16.12 8.57 0.00 4.01
556 596 4.212214 GCTACTATTGATGTACAGGCAAGC 59.788 45.833 16.12 11.18 0.00 4.01
575 615 4.147219 AGCGATTTCAACCTCTTTTTCG 57.853 40.909 0.00 0.00 0.00 3.46
576 616 3.564225 AGCGATTTCAACCTCTTTTTCGT 59.436 39.130 0.00 0.00 0.00 3.85
577 617 4.753107 AGCGATTTCAACCTCTTTTTCGTA 59.247 37.500 0.00 0.00 0.00 3.43
578 618 5.237779 AGCGATTTCAACCTCTTTTTCGTAA 59.762 36.000 0.00 0.00 0.00 3.18
596 636 7.359262 TTCGTAAAGAAAACATCATCGATGT 57.641 32.000 24.09 9.70 43.21 3.06
686 726 4.206477 TGACAATGATCCACCACAGTAG 57.794 45.455 0.00 0.00 0.00 2.57
841 882 2.126071 AGGAACACGATCGCACCG 60.126 61.111 16.60 3.86 0.00 4.94
843 884 1.735198 GGAACACGATCGCACCGAA 60.735 57.895 16.60 0.00 39.99 4.30
859 900 2.290008 ACCGAACACCTGAATGCACATA 60.290 45.455 0.00 0.00 0.00 2.29
936 980 2.272230 TTTCCCGGACACCTGTGCAA 62.272 55.000 0.73 0.00 36.05 4.08
941 985 1.526917 GGACACCTGTGCAAGCAGT 60.527 57.895 0.00 0.00 36.33 4.40
1072 1139 2.373269 GGTGTATATATAGAGCGCGCG 58.627 52.381 28.44 28.44 0.00 6.86
1105 1172 1.021390 CAGCACCAACCGAGACATCC 61.021 60.000 0.00 0.00 0.00 3.51
1293 1364 1.381735 GGGAAGGGAAAGGGGCATG 60.382 63.158 0.00 0.00 0.00 4.06
1533 1611 3.803082 CTTCGTGCATGCACCCGG 61.803 66.667 37.92 26.67 43.49 5.73
1566 1647 2.745281 GCCGCTGGACTACATTTTGTTA 59.255 45.455 0.00 0.00 0.00 2.41
1594 1675 0.599204 TCCTTTGTTCACGGAGCGAC 60.599 55.000 0.00 0.00 0.00 5.19
1704 1785 7.489757 GTGCTTTTTGTTGAAAGTGTACCATTA 59.510 33.333 0.00 0.00 38.56 1.90
1812 1893 6.452244 AAAATTGCTTCAAGTTAATCGCAC 57.548 33.333 0.00 0.00 30.35 5.34
1813 1894 3.552604 TTGCTTCAAGTTAATCGCACC 57.447 42.857 0.00 0.00 0.00 5.01
1829 1910 1.736126 GCACCTAGCCGAAACCTTAAC 59.264 52.381 0.00 0.00 37.23 2.01
1855 1936 7.025365 GGTTAACTACTCGCCAAATTTTAAGG 58.975 38.462 5.42 0.00 0.00 2.69
1897 1978 8.522830 CCATTCCAACTCTCTTATTTTTAAGCA 58.477 33.333 0.00 0.00 0.00 3.91
1902 1983 6.749923 ACTCTCTTATTTTTAAGCAGCCAG 57.250 37.500 0.00 0.00 0.00 4.85
1958 2041 1.446272 CGTGACGCCTTCTTCTCCC 60.446 63.158 0.00 0.00 0.00 4.30
1961 2044 0.608640 TGACGCCTTCTTCTCCCTTC 59.391 55.000 0.00 0.00 0.00 3.46
1964 2047 0.610687 CGCCTTCTTCTCCCTTCTGT 59.389 55.000 0.00 0.00 0.00 3.41
1976 2059 1.207089 CCCTTCTGTTGATGTCGGCTA 59.793 52.381 0.00 0.00 0.00 3.93
1981 2064 2.165641 TCTGTTGATGTCGGCTATTCGT 59.834 45.455 0.00 0.00 0.00 3.85
2000 2083 0.821711 TTGCCCTGGTGACCGAAAAG 60.822 55.000 0.00 0.00 0.00 2.27
2094 2177 1.741770 GCGATTCACAACTCGGGCT 60.742 57.895 0.00 0.00 35.48 5.19
2164 2247 1.005662 CATACAGCTGATGTCGTTGCG 60.006 52.381 23.35 0.00 42.70 4.85
2170 2253 1.710013 CTGATGTCGTTGCGGTAGTT 58.290 50.000 0.00 0.00 0.00 2.24
2189 2272 0.756294 TGTGGACCATGAACACGAGT 59.244 50.000 0.00 0.00 37.92 4.18
2194 2277 1.003355 CCATGAACACGAGTGCCCT 60.003 57.895 2.76 0.00 0.00 5.19
2255 2339 3.899981 ATGAAGAGGCGGCGCACAA 62.900 57.895 34.36 15.71 0.00 3.33
2281 2365 0.802222 CATCCGACGTGGTGCAGTAG 60.802 60.000 0.00 0.00 39.52 2.57
2291 2375 2.169352 GTGGTGCAGTAGGACATCTCAT 59.831 50.000 0.00 0.00 37.91 2.90
2338 2422 1.667830 CGCCTCCATCGTTGTGTGT 60.668 57.895 0.00 0.00 0.00 3.72
2343 2427 2.630872 CATCGTTGTGTGTGCGCA 59.369 55.556 5.66 5.66 0.00 6.09
2360 2444 2.112475 GCATTGTTGTTGCGTGTGTA 57.888 45.000 0.00 0.00 0.00 2.90
2385 2469 4.579753 TGATGATGATTGTGTGTGTGTGTT 59.420 37.500 0.00 0.00 0.00 3.32
2386 2470 4.290104 TGATGATTGTGTGTGTGTGTTG 57.710 40.909 0.00 0.00 0.00 3.33
2387 2471 3.693578 TGATGATTGTGTGTGTGTGTTGT 59.306 39.130 0.00 0.00 0.00 3.32
2388 2472 4.157472 TGATGATTGTGTGTGTGTGTTGTT 59.843 37.500 0.00 0.00 0.00 2.83
2391 2475 3.717400 TTGTGTGTGTGTGTTGTTGTT 57.283 38.095 0.00 0.00 0.00 2.83
2392 2476 3.005341 TGTGTGTGTGTGTTGTTGTTG 57.995 42.857 0.00 0.00 0.00 3.33
2393 2477 2.359214 TGTGTGTGTGTGTTGTTGTTGT 59.641 40.909 0.00 0.00 0.00 3.32
2394 2478 3.181486 TGTGTGTGTGTGTTGTTGTTGTT 60.181 39.130 0.00 0.00 0.00 2.83
2395 2479 3.181377 GTGTGTGTGTGTTGTTGTTGTTG 59.819 43.478 0.00 0.00 0.00 3.33
2396 2480 3.181486 TGTGTGTGTGTTGTTGTTGTTGT 60.181 39.130 0.00 0.00 0.00 3.32
2397 2481 3.799420 GTGTGTGTGTTGTTGTTGTTGTT 59.201 39.130 0.00 0.00 0.00 2.83
2398 2482 3.798878 TGTGTGTGTTGTTGTTGTTGTTG 59.201 39.130 0.00 0.00 0.00 3.33
2399 2483 3.799420 GTGTGTGTTGTTGTTGTTGTTGT 59.201 39.130 0.00 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 71 9.798994 ACGGATCTTACGCTATAAATTATAAGG 57.201 33.333 0.00 0.00 34.00 2.69
136 138 5.031066 TCCCTACATTGTTATAGTGTGGC 57.969 43.478 0.00 0.00 31.12 5.01
139 141 9.802039 TTTCTTTTCCCTACATTGTTATAGTGT 57.198 29.630 0.00 0.00 33.42 3.55
262 290 1.074850 CCTCCCTCTCCCTCCCTTC 60.075 68.421 0.00 0.00 0.00 3.46
263 291 1.550374 TCCTCCCTCTCCCTCCCTT 60.550 63.158 0.00 0.00 0.00 3.95
443 481 4.141251 ACACTCTTAACCCAACAACCATCT 60.141 41.667 0.00 0.00 0.00 2.90
489 528 2.551912 AAAAGAGCCCGTGCGTTGG 61.552 57.895 0.00 0.00 44.33 3.77
533 573 4.212214 GCTTGCCTGTACATCAATAGTAGC 59.788 45.833 10.05 6.99 0.00 3.58
535 575 4.098807 TCGCTTGCCTGTACATCAATAGTA 59.901 41.667 10.05 0.00 0.00 1.82
536 576 3.118775 TCGCTTGCCTGTACATCAATAGT 60.119 43.478 10.05 0.00 0.00 2.12
548 588 0.883833 AGGTTGAAATCGCTTGCCTG 59.116 50.000 0.00 0.00 0.00 4.85
553 593 4.036380 ACGAAAAAGAGGTTGAAATCGCTT 59.964 37.500 0.00 0.00 32.68 4.68
555 595 3.885358 ACGAAAAAGAGGTTGAAATCGC 58.115 40.909 0.00 0.00 32.68 4.58
556 596 7.349711 TCTTTACGAAAAAGAGGTTGAAATCG 58.650 34.615 11.81 0.00 32.90 3.34
613 653 3.646162 AGTATGTGGACTGAGGTGTTTCA 59.354 43.478 0.00 0.00 0.00 2.69
619 659 1.078823 TGGGAGTATGTGGACTGAGGT 59.921 52.381 0.00 0.00 0.00 3.85
708 748 3.000041 TGTCAGTGCCGTCAAACATATC 59.000 45.455 0.00 0.00 0.00 1.63
841 882 5.762825 ATGATATGTGCATTCAGGTGTTC 57.237 39.130 0.00 0.00 0.00 3.18
843 884 6.148315 CGATTATGATATGTGCATTCAGGTGT 59.852 38.462 0.00 0.00 0.00 4.16
859 900 0.974383 GGGACGGGGTCGATTATGAT 59.026 55.000 0.00 0.00 40.11 2.45
936 980 2.202878 ACGACACAACGCACTGCT 60.203 55.556 0.00 0.00 36.70 4.24
941 985 1.942223 CGACTGACGACACAACGCA 60.942 57.895 0.00 0.00 45.77 5.24
1072 1139 4.792804 GCTGCTGGGGAGGTGAGC 62.793 72.222 0.00 0.00 0.00 4.26
1077 1144 3.970410 TTGGTGCTGCTGGGGAGG 61.970 66.667 0.00 0.00 0.00 4.30
1105 1172 1.033746 ATTCTGCTGTTGGCCGGATG 61.034 55.000 5.05 0.00 40.92 3.51
1135 1205 3.708195 TCGGATTTCGAAGTCGTCC 57.292 52.632 13.69 11.38 45.86 4.79
1473 1550 7.344352 TCGATCCATTCCCTCCAAAAATAAAAT 59.656 33.333 0.00 0.00 0.00 1.82
1478 1555 4.249638 TCGATCCATTCCCTCCAAAAAT 57.750 40.909 0.00 0.00 0.00 1.82
1484 1561 2.938956 AACATCGATCCATTCCCTCC 57.061 50.000 0.00 0.00 0.00 4.30
1542 1623 0.037590 AAATGTAGTCCAGCGGCCAA 59.962 50.000 2.24 0.00 0.00 4.52
1551 1632 7.065923 GGATTCAGAGGTAACAAAATGTAGTCC 59.934 40.741 0.00 0.00 41.41 3.85
1553 1634 7.690256 AGGATTCAGAGGTAACAAAATGTAGT 58.310 34.615 0.00 0.00 41.41 2.73
1566 1647 3.403038 CGTGAACAAAGGATTCAGAGGT 58.597 45.455 0.00 0.00 36.76 3.85
1594 1675 3.815337 ATGATCGATCGACTAGAACGG 57.185 47.619 22.06 0.00 43.98 4.44
1661 1742 3.411446 AGCACACGAGATCATGGAAAAA 58.589 40.909 0.00 0.00 0.00 1.94
1704 1785 5.563085 CGGCTAGAGACGCTTTTACAGATAT 60.563 44.000 0.00 0.00 40.91 1.63
1788 1869 6.073819 GGTGCGATTAACTTGAAGCAATTTTT 60.074 34.615 0.00 0.00 36.32 1.94
1792 1873 3.758554 AGGTGCGATTAACTTGAAGCAAT 59.241 39.130 0.00 0.00 36.32 3.56
1793 1874 3.146066 AGGTGCGATTAACTTGAAGCAA 58.854 40.909 0.00 0.00 36.32 3.91
1794 1875 2.778299 AGGTGCGATTAACTTGAAGCA 58.222 42.857 0.00 0.00 0.00 3.91
1795 1876 3.242446 GCTAGGTGCGATTAACTTGAAGC 60.242 47.826 0.00 0.00 0.00 3.86
1796 1877 3.309954 GGCTAGGTGCGATTAACTTGAAG 59.690 47.826 0.00 0.00 44.05 3.02
1797 1878 3.267483 GGCTAGGTGCGATTAACTTGAA 58.733 45.455 0.00 0.00 44.05 2.69
1798 1879 2.737359 CGGCTAGGTGCGATTAACTTGA 60.737 50.000 0.00 0.00 44.05 3.02
1799 1880 1.593006 CGGCTAGGTGCGATTAACTTG 59.407 52.381 0.00 0.00 44.05 3.16
1800 1881 1.479323 TCGGCTAGGTGCGATTAACTT 59.521 47.619 0.00 0.00 44.05 2.66
1801 1882 1.108776 TCGGCTAGGTGCGATTAACT 58.891 50.000 0.00 0.00 44.05 2.24
1802 1883 1.930567 TTCGGCTAGGTGCGATTAAC 58.069 50.000 0.00 0.00 44.05 2.01
1803 1884 2.273557 GTTTCGGCTAGGTGCGATTAA 58.726 47.619 0.00 0.00 44.05 1.40
1804 1885 1.472026 GGTTTCGGCTAGGTGCGATTA 60.472 52.381 0.00 0.00 44.05 1.75
1805 1886 0.743345 GGTTTCGGCTAGGTGCGATT 60.743 55.000 0.00 0.00 44.05 3.34
1806 1887 1.153429 GGTTTCGGCTAGGTGCGAT 60.153 57.895 0.00 0.00 44.05 4.58
1807 1888 1.823169 AAGGTTTCGGCTAGGTGCGA 61.823 55.000 0.00 0.00 44.05 5.10
1808 1889 0.108520 TAAGGTTTCGGCTAGGTGCG 60.109 55.000 0.00 0.00 44.05 5.34
1809 1890 1.736126 GTTAAGGTTTCGGCTAGGTGC 59.264 52.381 0.00 0.00 41.94 5.01
1810 1891 1.997606 CGTTAAGGTTTCGGCTAGGTG 59.002 52.381 0.00 0.00 0.00 4.00
1811 1892 1.066645 CCGTTAAGGTTTCGGCTAGGT 60.067 52.381 0.00 0.00 37.90 3.08
1812 1893 1.648504 CCGTTAAGGTTTCGGCTAGG 58.351 55.000 0.00 0.00 37.90 3.02
1829 1910 4.673534 AAATTTGGCGAGTAGTTAACCG 57.326 40.909 0.88 0.00 0.00 4.44
1855 1936 4.830600 TGGAATGGTTTTGGGAGTTAACTC 59.169 41.667 24.73 24.73 42.14 3.01
1940 2023 1.446272 GGGAGAAGAAGGCGTCACG 60.446 63.158 2.69 0.00 0.00 4.35
1946 2029 2.039084 TCAACAGAAGGGAGAAGAAGGC 59.961 50.000 0.00 0.00 0.00 4.35
1958 2041 3.243877 CGAATAGCCGACATCAACAGAAG 59.756 47.826 0.00 0.00 0.00 2.85
1961 2044 2.540515 ACGAATAGCCGACATCAACAG 58.459 47.619 0.00 0.00 0.00 3.16
1964 2047 1.663643 GCAACGAATAGCCGACATCAA 59.336 47.619 0.00 0.00 0.00 2.57
1976 2059 1.303317 GGTCACCAGGGCAACGAAT 60.303 57.895 0.00 0.00 37.60 3.34
1981 2064 0.821711 CTTTTCGGTCACCAGGGCAA 60.822 55.000 0.00 0.00 0.00 4.52
2036 2119 4.363999 GACGAGAATATGACACCCAAGAG 58.636 47.826 0.00 0.00 0.00 2.85
2071 2154 0.443869 CGAGTTGTGAATCGCCCAAG 59.556 55.000 0.00 0.00 31.42 3.61
2077 2160 1.970917 GCAGCCCGAGTTGTGAATCG 61.971 60.000 0.00 0.00 38.65 3.34
2130 2213 2.289694 GCTGTATGTTCCAGTCCACTGT 60.290 50.000 5.99 0.00 42.27 3.55
2145 2228 1.280982 CGCAACGACATCAGCTGTAT 58.719 50.000 14.67 3.15 38.54 2.29
2147 2230 2.029288 CCGCAACGACATCAGCTGT 61.029 57.895 14.67 0.00 42.15 4.40
2150 2233 0.736325 ACTACCGCAACGACATCAGC 60.736 55.000 0.00 0.00 0.00 4.26
2164 2247 2.812011 GTGTTCATGGTCCACAACTACC 59.188 50.000 14.09 0.00 36.24 3.18
2170 2253 0.756294 ACTCGTGTTCATGGTCCACA 59.244 50.000 0.00 0.00 0.00 4.17
2281 2365 1.691434 GGAGTGGAGGATGAGATGTCC 59.309 57.143 0.00 0.00 35.94 4.02
2311 2395 0.592148 CGATGGAGGCGGAGTACTAC 59.408 60.000 0.00 0.00 0.00 2.73
2343 2427 2.939756 TCAGTACACACGCAACAACAAT 59.060 40.909 0.00 0.00 0.00 2.71
2360 2444 4.214758 CACACACACACAATCATCATCAGT 59.785 41.667 0.00 0.00 0.00 3.41
2385 2469 4.260375 GCAACAACAACAACAACAACAACA 60.260 37.500 0.00 0.00 0.00 3.33
2386 2470 4.025313 AGCAACAACAACAACAACAACAAC 60.025 37.500 0.00 0.00 0.00 3.32
2387 2471 4.122776 AGCAACAACAACAACAACAACAA 58.877 34.783 0.00 0.00 0.00 2.83
2388 2472 3.722147 AGCAACAACAACAACAACAACA 58.278 36.364 0.00 0.00 0.00 3.33
2391 2475 2.560542 AGGAGCAACAACAACAACAACA 59.439 40.909 0.00 0.00 0.00 3.33
2392 2476 2.923020 CAGGAGCAACAACAACAACAAC 59.077 45.455 0.00 0.00 0.00 3.32
2393 2477 2.560542 ACAGGAGCAACAACAACAACAA 59.439 40.909 0.00 0.00 0.00 2.83
2394 2478 2.094803 CACAGGAGCAACAACAACAACA 60.095 45.455 0.00 0.00 0.00 3.33
2395 2479 2.094752 ACACAGGAGCAACAACAACAAC 60.095 45.455 0.00 0.00 0.00 3.32
2396 2480 2.094803 CACACAGGAGCAACAACAACAA 60.095 45.455 0.00 0.00 0.00 2.83
2397 2481 1.472082 CACACAGGAGCAACAACAACA 59.528 47.619 0.00 0.00 0.00 3.33
2398 2482 1.472480 ACACACAGGAGCAACAACAAC 59.528 47.619 0.00 0.00 0.00 3.32
2399 2483 1.472082 CACACACAGGAGCAACAACAA 59.528 47.619 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.