Multiple sequence alignment - TraesCS2B01G337300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G337300 chr2B 100.000 3987 0 0 1 3987 481640176 481636190 0.000000e+00 7363.0
1 TraesCS2B01G337300 chr2B 93.631 157 10 0 3828 3984 393458845 393459001 6.660000e-58 235.0
2 TraesCS2B01G337300 chr2D 92.638 3423 123 54 363 3738 406151764 406148424 0.000000e+00 4806.0
3 TraesCS2B01G337300 chr2D 82.911 316 20 11 1 283 406198824 406198510 1.840000e-63 254.0
4 TraesCS2B01G337300 chr2A 91.852 2786 125 37 818 3544 544300043 544297301 0.000000e+00 3794.0
5 TraesCS2B01G337300 chr2A 85.468 523 34 23 319 832 544300548 544300059 1.280000e-139 507.0
6 TraesCS2B01G337300 chr2A 93.506 77 4 1 3708 3784 544290808 544290733 3.260000e-21 113.0
7 TraesCS2B01G337300 chr2A 100.000 42 0 0 3531 3572 544297218 544297177 1.190000e-10 78.7
8 TraesCS2B01G337300 chr1A 95.706 163 7 0 3825 3987 584068009 584067847 3.060000e-66 263.0
9 TraesCS2B01G337300 chr6B 92.771 166 10 2 3819 3984 672727717 672727880 5.150000e-59 239.0
10 TraesCS2B01G337300 chr6B 91.667 72 6 0 1764 1835 59024396 59024467 2.540000e-17 100.0
11 TraesCS2B01G337300 chr5B 93.210 162 11 0 3826 3987 87010314 87010475 5.150000e-59 239.0
12 TraesCS2B01G337300 chr5B 93.210 162 11 0 3826 3987 567845881 567845720 5.150000e-59 239.0
13 TraesCS2B01G337300 chr3D 92.638 163 12 0 3825 3987 275642894 275642732 6.660000e-58 235.0
14 TraesCS2B01G337300 chr7D 92.073 164 10 2 3827 3987 148129139 148128976 1.110000e-55 228.0
15 TraesCS2B01G337300 chr7D 92.453 159 10 1 3826 3984 112329044 112329200 4.010000e-55 226.0
16 TraesCS2B01G337300 chr6A 91.358 162 11 1 3826 3987 551184071 551183913 6.710000e-53 219.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G337300 chr2B 481636190 481640176 3986 True 7363.0 7363 100.000 1 3987 1 chr2B.!!$R1 3986
1 TraesCS2B01G337300 chr2D 406148424 406151764 3340 True 4806.0 4806 92.638 363 3738 1 chr2D.!!$R1 3375
2 TraesCS2B01G337300 chr2A 544297177 544300548 3371 True 1459.9 3794 92.440 319 3572 3 chr2A.!!$R2 3253

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
241 242 0.025770 CACAACACGCGTCGTTTCTT 59.974 50.0 9.86 1.91 38.32 2.52 F
335 336 0.112412 ACTGACCCACCAAATCCCAC 59.888 55.0 0.00 0.00 0.00 4.61 F
974 1026 0.324368 AATTCTTTTCCCTCGGCCCC 60.324 55.0 0.00 0.00 0.00 5.80 F
1179 1238 0.391661 TCGGTTTCCATGAGCTGAGC 60.392 55.0 0.00 0.00 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1153 1212 1.297598 CATGGAAACCGAATCGCGC 60.298 57.895 0.0 0.0 39.11 6.86 R
1579 1662 1.379176 CGTCCTCAGCTCCTCCTCA 60.379 63.158 0.0 0.0 0.00 3.86 R
2200 2292 2.683933 TTCACCTCCTCCTCGGCC 60.684 66.667 0.0 0.0 0.00 6.13 R
3135 3237 2.563179 TCAGCCTAGAAAGTGTCAGTCC 59.437 50.000 0.0 0.0 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.003788 CAGGACTTCCGGTGCCGT 62.004 66.667 9.90 0.00 42.08 5.68
18 19 4.003788 AGGACTTCCGGTGCCGTG 62.004 66.667 9.90 1.68 42.08 4.94
20 21 3.998672 GACTTCCGGTGCCGTGGA 61.999 66.667 9.90 0.00 37.81 4.02
21 22 3.310860 GACTTCCGGTGCCGTGGAT 62.311 63.158 9.90 0.00 37.81 3.41
22 23 2.511600 CTTCCGGTGCCGTGGATC 60.512 66.667 9.90 0.00 37.81 3.36
23 24 3.000819 TTCCGGTGCCGTGGATCT 61.001 61.111 9.90 0.00 37.81 2.75
24 25 3.309436 TTCCGGTGCCGTGGATCTG 62.309 63.158 9.90 0.00 37.81 2.90
25 26 4.838152 CCGGTGCCGTGGATCTGG 62.838 72.222 9.90 0.00 37.81 3.86
26 27 3.770040 CGGTGCCGTGGATCTGGA 61.770 66.667 1.93 0.00 34.35 3.86
27 28 2.668632 GGTGCCGTGGATCTGGAA 59.331 61.111 3.77 0.00 0.00 3.53
28 29 1.224592 GGTGCCGTGGATCTGGAAT 59.775 57.895 3.77 0.00 0.00 3.01
29 30 0.394352 GGTGCCGTGGATCTGGAATT 60.394 55.000 3.77 0.00 0.00 2.17
30 31 1.463674 GTGCCGTGGATCTGGAATTT 58.536 50.000 3.77 0.00 0.00 1.82
31 32 1.401905 GTGCCGTGGATCTGGAATTTC 59.598 52.381 3.77 0.00 0.00 2.17
32 33 1.025041 GCCGTGGATCTGGAATTTCC 58.975 55.000 8.59 8.59 36.96 3.13
33 34 1.681780 GCCGTGGATCTGGAATTTCCA 60.682 52.381 17.09 17.09 45.98 3.53
36 37 1.750193 TGGATCTGGAATTTCCACGC 58.250 50.000 14.24 6.48 42.67 5.34
37 38 0.657840 GGATCTGGAATTTCCACGCG 59.342 55.000 14.24 3.53 42.67 6.01
38 39 1.369625 GATCTGGAATTTCCACGCGT 58.630 50.000 14.24 5.58 42.67 6.01
39 40 1.062587 GATCTGGAATTTCCACGCGTG 59.937 52.381 31.77 31.77 42.67 5.34
58 59 3.376218 GAGAATCCTCGCATGCACT 57.624 52.632 19.57 4.61 0.00 4.40
59 60 0.935898 GAGAATCCTCGCATGCACTG 59.064 55.000 19.57 6.55 0.00 3.66
60 61 0.538584 AGAATCCTCGCATGCACTGA 59.461 50.000 19.57 10.42 0.00 3.41
61 62 0.654683 GAATCCTCGCATGCACTGAC 59.345 55.000 19.57 0.00 0.00 3.51
62 63 0.036105 AATCCTCGCATGCACTGACA 60.036 50.000 19.57 0.00 0.00 3.58
63 64 0.742281 ATCCTCGCATGCACTGACAC 60.742 55.000 19.57 0.00 0.00 3.67
64 65 1.668793 CCTCGCATGCACTGACACA 60.669 57.895 19.57 0.00 0.00 3.72
65 66 1.022982 CCTCGCATGCACTGACACAT 61.023 55.000 19.57 0.00 0.00 3.21
66 67 0.096454 CTCGCATGCACTGACACATG 59.904 55.000 19.57 0.00 45.19 3.21
67 68 0.603439 TCGCATGCACTGACACATGT 60.603 50.000 19.57 0.00 44.43 3.21
68 69 0.239082 CGCATGCACTGACACATGTT 59.761 50.000 19.57 0.00 44.43 2.71
69 70 1.335233 CGCATGCACTGACACATGTTT 60.335 47.619 19.57 0.00 44.43 2.83
70 71 2.746269 GCATGCACTGACACATGTTTT 58.254 42.857 14.21 0.00 44.43 2.43
71 72 3.125316 GCATGCACTGACACATGTTTTT 58.875 40.909 14.21 0.00 44.43 1.94
90 91 4.594123 TTTTAGCCAAGGTTTTACTGGC 57.406 40.909 4.11 4.11 45.30 4.85
94 95 2.687370 GCCAAGGTTTTACTGGCAATG 58.313 47.619 7.42 0.00 44.42 2.82
95 96 2.037121 GCCAAGGTTTTACTGGCAATGT 59.963 45.455 7.42 0.00 44.42 2.71
96 97 3.257127 GCCAAGGTTTTACTGGCAATGTA 59.743 43.478 7.42 0.00 44.42 2.29
97 98 4.262249 GCCAAGGTTTTACTGGCAATGTAA 60.262 41.667 7.42 0.00 44.42 2.41
98 99 5.740513 GCCAAGGTTTTACTGGCAATGTAAA 60.741 40.000 7.42 7.70 44.42 2.01
99 100 6.284459 CCAAGGTTTTACTGGCAATGTAAAA 58.716 36.000 16.38 16.38 43.33 1.52
100 101 6.423604 CCAAGGTTTTACTGGCAATGTAAAAG 59.576 38.462 19.24 11.10 44.94 2.27
101 102 6.724893 AGGTTTTACTGGCAATGTAAAAGT 57.275 33.333 19.24 10.86 44.94 2.66
102 103 6.512297 AGGTTTTACTGGCAATGTAAAAGTG 58.488 36.000 19.24 0.00 44.94 3.16
103 104 5.694458 GGTTTTACTGGCAATGTAAAAGTGG 59.306 40.000 19.24 0.00 44.94 4.00
104 105 6.461788 GGTTTTACTGGCAATGTAAAAGTGGA 60.462 38.462 19.24 2.31 44.94 4.02
105 106 6.716934 TTTACTGGCAATGTAAAAGTGGAA 57.283 33.333 8.99 0.00 37.07 3.53
106 107 6.716934 TTACTGGCAATGTAAAAGTGGAAA 57.283 33.333 0.00 0.00 0.00 3.13
107 108 5.200368 ACTGGCAATGTAAAAGTGGAAAG 57.800 39.130 0.00 0.00 0.00 2.62
108 109 4.892934 ACTGGCAATGTAAAAGTGGAAAGA 59.107 37.500 0.00 0.00 0.00 2.52
109 110 5.195001 TGGCAATGTAAAAGTGGAAAGAC 57.805 39.130 0.00 0.00 0.00 3.01
110 111 4.226761 GGCAATGTAAAAGTGGAAAGACG 58.773 43.478 0.00 0.00 0.00 4.18
111 112 4.261447 GGCAATGTAAAAGTGGAAAGACGT 60.261 41.667 0.00 0.00 0.00 4.34
112 113 5.049267 GGCAATGTAAAAGTGGAAAGACGTA 60.049 40.000 0.00 0.00 0.00 3.57
113 114 6.432107 GCAATGTAAAAGTGGAAAGACGTAA 58.568 36.000 0.00 0.00 0.00 3.18
114 115 6.913673 GCAATGTAAAAGTGGAAAGACGTAAA 59.086 34.615 0.00 0.00 0.00 2.01
115 116 7.096763 GCAATGTAAAAGTGGAAAGACGTAAAC 60.097 37.037 0.00 0.00 0.00 2.01
116 117 6.035070 TGTAAAAGTGGAAAGACGTAAACG 57.965 37.500 0.04 0.04 46.33 3.60
117 118 4.541085 AAAAGTGGAAAGACGTAAACGG 57.459 40.909 7.50 0.00 44.95 4.44
128 129 4.552608 GACGTAAACGGCTTACAAGTAC 57.447 45.455 7.50 0.00 45.57 2.73
129 130 2.979813 ACGTAAACGGCTTACAAGTACG 59.020 45.455 7.50 0.00 44.95 3.67
130 131 2.979813 CGTAAACGGCTTACAAGTACGT 59.020 45.455 0.00 0.00 40.07 3.57
131 132 4.155449 CGTAAACGGCTTACAAGTACGTA 58.845 43.478 12.02 0.00 40.07 3.57
132 133 4.260656 CGTAAACGGCTTACAAGTACGTAG 59.739 45.833 12.02 0.00 40.07 3.51
133 134 5.154222 GTAAACGGCTTACAAGTACGTAGT 58.846 41.667 12.02 0.00 41.56 2.73
134 135 5.371115 AAACGGCTTACAAGTACGTAGTA 57.629 39.130 2.72 0.00 45.11 1.82
135 136 6.466097 GTAAACGGCTTACAAGTACGTAGTAG 59.534 42.308 2.72 0.00 40.97 2.57
136 137 7.834316 GTAAACGGCTTACAAGTACGTAGTAGT 60.834 40.741 2.72 1.30 40.97 2.73
149 150 4.277257 CGTAGTAGTACGTGGTTATGCA 57.723 45.455 19.78 0.00 45.84 3.96
150 151 4.277258 CGTAGTAGTACGTGGTTATGCAG 58.723 47.826 19.78 0.00 45.84 4.41
151 152 4.201851 CGTAGTAGTACGTGGTTATGCAGT 60.202 45.833 19.78 0.00 45.84 4.40
152 153 4.106029 AGTAGTACGTGGTTATGCAGTG 57.894 45.455 0.00 0.00 0.00 3.66
153 154 3.508793 AGTAGTACGTGGTTATGCAGTGT 59.491 43.478 0.00 0.00 0.00 3.55
154 155 3.396260 AGTACGTGGTTATGCAGTGTT 57.604 42.857 0.00 0.00 0.00 3.32
155 156 4.524316 AGTACGTGGTTATGCAGTGTTA 57.476 40.909 0.00 0.00 0.00 2.41
156 157 4.885413 AGTACGTGGTTATGCAGTGTTAA 58.115 39.130 0.00 0.00 0.00 2.01
157 158 4.687483 AGTACGTGGTTATGCAGTGTTAAC 59.313 41.667 0.00 0.00 0.00 2.01
158 159 3.735591 ACGTGGTTATGCAGTGTTAACT 58.264 40.909 7.22 0.00 36.98 2.24
168 169 2.560504 CAGTGTTAACTGCTGACACCA 58.439 47.619 19.19 0.00 46.98 4.17
169 170 3.141398 CAGTGTTAACTGCTGACACCAT 58.859 45.455 19.19 0.00 46.98 3.55
170 171 3.058708 CAGTGTTAACTGCTGACACCATG 60.059 47.826 19.19 0.00 46.98 3.66
171 172 3.138304 GTGTTAACTGCTGACACCATGA 58.862 45.455 7.22 0.00 38.12 3.07
172 173 3.058914 GTGTTAACTGCTGACACCATGAC 60.059 47.826 7.22 0.00 38.12 3.06
173 174 3.138304 GTTAACTGCTGACACCATGACA 58.862 45.455 0.00 0.00 0.00 3.58
174 175 2.574006 AACTGCTGACACCATGACAT 57.426 45.000 0.00 0.00 0.00 3.06
175 176 1.817357 ACTGCTGACACCATGACATG 58.183 50.000 8.56 8.56 0.00 3.21
176 177 0.450583 CTGCTGACACCATGACATGC 59.549 55.000 10.10 0.00 0.00 4.06
177 178 0.961857 TGCTGACACCATGACATGCC 60.962 55.000 10.10 0.00 0.00 4.40
178 179 1.985447 GCTGACACCATGACATGCCG 61.985 60.000 10.10 5.44 0.00 5.69
179 180 0.391528 CTGACACCATGACATGCCGA 60.392 55.000 10.10 0.00 0.00 5.54
180 181 0.252761 TGACACCATGACATGCCGAT 59.747 50.000 10.10 0.00 0.00 4.18
181 182 1.339920 TGACACCATGACATGCCGATT 60.340 47.619 10.10 0.00 0.00 3.34
182 183 1.745087 GACACCATGACATGCCGATTT 59.255 47.619 10.10 0.00 0.00 2.17
183 184 1.745087 ACACCATGACATGCCGATTTC 59.255 47.619 10.10 0.00 0.00 2.17
184 185 1.016627 ACCATGACATGCCGATTTCG 58.983 50.000 10.10 0.00 39.44 3.46
185 186 1.016627 CCATGACATGCCGATTTCGT 58.983 50.000 10.10 0.00 37.74 3.85
186 187 1.401552 CCATGACATGCCGATTTCGTT 59.598 47.619 10.10 0.00 37.74 3.85
187 188 2.611751 CCATGACATGCCGATTTCGTTA 59.388 45.455 10.10 0.00 37.74 3.18
188 189 3.250762 CCATGACATGCCGATTTCGTTAT 59.749 43.478 10.10 0.00 37.74 1.89
189 190 3.942539 TGACATGCCGATTTCGTTATG 57.057 42.857 0.00 10.31 37.06 1.90
190 191 3.526534 TGACATGCCGATTTCGTTATGA 58.473 40.909 15.83 0.00 35.87 2.15
191 192 4.126437 TGACATGCCGATTTCGTTATGAT 58.874 39.130 15.83 5.32 35.87 2.45
192 193 4.574421 TGACATGCCGATTTCGTTATGATT 59.426 37.500 15.83 1.01 35.87 2.57
193 194 5.065859 TGACATGCCGATTTCGTTATGATTT 59.934 36.000 15.83 0.49 35.87 2.17
194 195 5.273170 ACATGCCGATTTCGTTATGATTTG 58.727 37.500 15.83 0.66 35.87 2.32
195 196 5.065859 ACATGCCGATTTCGTTATGATTTGA 59.934 36.000 15.83 0.00 35.87 2.69
196 197 5.749596 TGCCGATTTCGTTATGATTTGAT 57.250 34.783 0.00 0.00 37.74 2.57
197 198 5.747565 TGCCGATTTCGTTATGATTTGATC 58.252 37.500 0.00 0.00 37.74 2.92
198 199 4.840772 GCCGATTTCGTTATGATTTGATCG 59.159 41.667 0.00 0.00 37.74 3.69
199 200 4.840772 CCGATTTCGTTATGATTTGATCGC 59.159 41.667 0.00 0.00 37.74 4.58
200 201 5.333339 CCGATTTCGTTATGATTTGATCGCT 60.333 40.000 0.00 0.00 37.74 4.93
201 202 5.780751 CGATTTCGTTATGATTTGATCGCTC 59.219 40.000 0.00 0.00 34.11 5.03
202 203 4.692371 TTCGTTATGATTTGATCGCTCG 57.308 40.909 0.00 0.00 0.00 5.03
203 204 2.471370 TCGTTATGATTTGATCGCTCGC 59.529 45.455 0.00 0.00 0.00 5.03
204 205 2.218530 CGTTATGATTTGATCGCTCGCA 59.781 45.455 0.00 0.00 0.00 5.10
205 206 3.302415 CGTTATGATTTGATCGCTCGCAA 60.302 43.478 0.00 0.00 0.00 4.85
206 207 4.609113 CGTTATGATTTGATCGCTCGCAAT 60.609 41.667 0.00 0.00 0.00 3.56
207 208 3.976793 ATGATTTGATCGCTCGCAATT 57.023 38.095 0.00 0.00 0.00 2.32
208 209 6.362686 GTTATGATTTGATCGCTCGCAATTA 58.637 36.000 0.00 0.00 0.00 1.40
209 210 4.873768 TGATTTGATCGCTCGCAATTAA 57.126 36.364 0.00 0.00 0.00 1.40
210 211 4.587306 TGATTTGATCGCTCGCAATTAAC 58.413 39.130 0.00 0.00 0.00 2.01
211 212 2.712132 TTGATCGCTCGCAATTAACG 57.288 45.000 0.00 0.00 0.00 3.18
212 213 1.915952 TGATCGCTCGCAATTAACGA 58.084 45.000 0.00 3.11 38.02 3.85
219 220 2.234300 TCGCAATTAACGAGGGGATC 57.766 50.000 0.00 0.00 33.96 3.36
220 221 1.483004 TCGCAATTAACGAGGGGATCA 59.517 47.619 0.00 0.00 33.96 2.92
221 222 2.093394 TCGCAATTAACGAGGGGATCAA 60.093 45.455 0.00 0.00 33.96 2.57
222 223 2.031683 CGCAATTAACGAGGGGATCAAC 59.968 50.000 0.00 0.00 0.00 3.18
223 224 3.013921 GCAATTAACGAGGGGATCAACA 58.986 45.455 0.00 0.00 0.00 3.33
224 225 3.181500 GCAATTAACGAGGGGATCAACAC 60.181 47.826 0.00 0.00 0.00 3.32
225 226 3.992943 ATTAACGAGGGGATCAACACA 57.007 42.857 0.00 0.00 0.00 3.72
226 227 3.773418 TTAACGAGGGGATCAACACAA 57.227 42.857 0.00 0.00 0.00 3.33
227 228 1.892209 AACGAGGGGATCAACACAAC 58.108 50.000 0.00 0.00 0.00 3.32
228 229 0.762418 ACGAGGGGATCAACACAACA 59.238 50.000 0.00 0.00 0.00 3.33
229 230 1.156736 CGAGGGGATCAACACAACAC 58.843 55.000 0.00 0.00 0.00 3.32
230 231 1.156736 GAGGGGATCAACACAACACG 58.843 55.000 0.00 0.00 0.00 4.49
231 232 0.889186 AGGGGATCAACACAACACGC 60.889 55.000 0.00 0.00 0.00 5.34
232 233 1.206578 GGGATCAACACAACACGCG 59.793 57.895 3.53 3.53 0.00 6.01
233 234 1.503818 GGGATCAACACAACACGCGT 61.504 55.000 5.58 5.58 0.00 6.01
234 235 0.110823 GGATCAACACAACACGCGTC 60.111 55.000 9.86 0.00 0.00 5.19
235 236 0.448861 GATCAACACAACACGCGTCG 60.449 55.000 9.86 8.08 0.00 5.12
236 237 1.149361 ATCAACACAACACGCGTCGT 61.149 50.000 9.86 8.84 42.36 4.34
237 238 1.059681 CAACACAACACGCGTCGTT 59.940 52.632 9.86 14.93 38.32 3.85
238 239 0.519586 CAACACAACACGCGTCGTTT 60.520 50.000 9.86 0.00 38.32 3.60
239 240 0.247379 AACACAACACGCGTCGTTTC 60.247 50.000 9.86 0.00 38.32 2.78
240 241 1.079875 ACACAACACGCGTCGTTTCT 61.080 50.000 9.86 2.51 38.32 2.52
241 242 0.025770 CACAACACGCGTCGTTTCTT 59.974 50.000 9.86 1.91 38.32 2.52
242 243 0.722848 ACAACACGCGTCGTTTCTTT 59.277 45.000 9.86 0.00 38.32 2.52
243 244 1.267186 ACAACACGCGTCGTTTCTTTC 60.267 47.619 9.86 0.00 38.32 2.62
244 245 0.302589 AACACGCGTCGTTTCTTTCC 59.697 50.000 9.86 0.00 38.32 3.13
245 246 0.806884 ACACGCGTCGTTTCTTTCCA 60.807 50.000 9.86 0.00 38.32 3.53
246 247 0.382636 CACGCGTCGTTTCTTTCCAC 60.383 55.000 9.86 0.00 38.32 4.02
247 248 1.203313 CGCGTCGTTTCTTTCCACC 59.797 57.895 0.00 0.00 0.00 4.61
248 249 1.219522 CGCGTCGTTTCTTTCCACCT 61.220 55.000 0.00 0.00 0.00 4.00
249 250 0.234884 GCGTCGTTTCTTTCCACCTG 59.765 55.000 0.00 0.00 0.00 4.00
250 251 1.578583 CGTCGTTTCTTTCCACCTGT 58.421 50.000 0.00 0.00 0.00 4.00
251 252 1.260561 CGTCGTTTCTTTCCACCTGTG 59.739 52.381 0.00 0.00 0.00 3.66
260 261 2.751436 CCACCTGTGGCCATTCGG 60.751 66.667 9.72 12.71 44.73 4.30
261 262 2.751436 CACCTGTGGCCATTCGGG 60.751 66.667 17.74 17.74 40.85 5.14
295 296 1.889545 TGATCAACACAACATGCCGA 58.110 45.000 0.00 0.00 0.00 5.54
296 297 2.435422 TGATCAACACAACATGCCGAT 58.565 42.857 0.00 0.00 0.00 4.18
297 298 2.819019 TGATCAACACAACATGCCGATT 59.181 40.909 0.00 0.00 0.00 3.34
298 299 3.255395 TGATCAACACAACATGCCGATTT 59.745 39.130 0.00 0.00 0.00 2.17
299 300 3.281341 TCAACACAACATGCCGATTTC 57.719 42.857 0.00 0.00 0.00 2.17
300 301 1.978097 CAACACAACATGCCGATTTCG 59.022 47.619 0.00 0.00 39.44 3.46
301 302 1.234821 ACACAACATGCCGATTTCGT 58.765 45.000 0.00 0.00 37.74 3.85
302 303 1.606668 ACACAACATGCCGATTTCGTT 59.393 42.857 0.00 0.00 37.74 3.85
303 304 2.809119 ACACAACATGCCGATTTCGTTA 59.191 40.909 0.00 0.00 37.74 3.18
304 305 3.438781 ACACAACATGCCGATTTCGTTAT 59.561 39.130 0.00 0.00 37.74 1.89
305 306 3.785521 CACAACATGCCGATTTCGTTATG 59.214 43.478 0.00 10.31 37.06 1.90
306 307 2.755836 ACATGCCGATTTCGTTATGC 57.244 45.000 11.28 3.71 35.57 3.14
307 308 2.013400 ACATGCCGATTTCGTTATGCA 58.987 42.857 11.28 8.25 37.26 3.96
308 309 2.223249 ACATGCCGATTTCGTTATGCAC 60.223 45.455 11.28 0.00 36.12 4.57
309 310 0.730265 TGCCGATTTCGTTATGCACC 59.270 50.000 0.00 0.00 37.74 5.01
310 311 1.014352 GCCGATTTCGTTATGCACCT 58.986 50.000 0.00 0.00 37.74 4.00
311 312 1.268032 GCCGATTTCGTTATGCACCTG 60.268 52.381 0.00 0.00 37.74 4.00
312 313 2.276201 CCGATTTCGTTATGCACCTGA 58.724 47.619 0.00 0.00 37.74 3.86
313 314 2.030457 CCGATTTCGTTATGCACCTGAC 59.970 50.000 0.00 0.00 37.74 3.51
314 315 2.930040 CGATTTCGTTATGCACCTGACT 59.070 45.455 0.00 0.00 34.11 3.41
315 316 3.242091 CGATTTCGTTATGCACCTGACTG 60.242 47.826 0.00 0.00 34.11 3.51
316 317 3.394674 TTTCGTTATGCACCTGACTGA 57.605 42.857 0.00 0.00 0.00 3.41
317 318 2.363788 TCGTTATGCACCTGACTGAC 57.636 50.000 0.00 0.00 0.00 3.51
335 336 0.112412 ACTGACCCACCAAATCCCAC 59.888 55.000 0.00 0.00 0.00 4.61
337 338 1.071314 TGACCCACCAAATCCCACCT 61.071 55.000 0.00 0.00 0.00 4.00
339 340 0.776080 ACCCACCAAATCCCACCTCT 60.776 55.000 0.00 0.00 0.00 3.69
345 346 0.745845 CAAATCCCACCTCTGGAGCG 60.746 60.000 0.00 0.00 40.55 5.03
347 348 1.333636 AATCCCACCTCTGGAGCGAG 61.334 60.000 0.00 0.00 40.55 5.03
350 351 2.659016 CACCTCTGGAGCGAGCAA 59.341 61.111 0.00 0.00 0.00 3.91
351 352 1.004560 CACCTCTGGAGCGAGCAAA 60.005 57.895 0.00 0.00 0.00 3.68
352 353 1.004440 ACCTCTGGAGCGAGCAAAC 60.004 57.895 0.00 0.00 0.00 2.93
353 354 1.004560 CCTCTGGAGCGAGCAAACA 60.005 57.895 0.00 0.00 0.00 2.83
354 355 0.603707 CCTCTGGAGCGAGCAAACAA 60.604 55.000 0.00 0.00 0.00 2.83
355 356 0.795085 CTCTGGAGCGAGCAAACAAG 59.205 55.000 0.00 0.00 0.00 3.16
366 367 1.493311 CAAACAAGACGCGGCTCTC 59.507 57.895 18.66 0.00 0.00 3.20
435 446 2.620585 CAGTCAGTCAGTCAGTCAGTCA 59.379 50.000 0.00 0.00 0.00 3.41
437 448 2.621055 GTCAGTCAGTCAGTCAGTCAGT 59.379 50.000 0.00 0.00 0.00 3.41
439 450 2.620585 CAGTCAGTCAGTCAGTCAGTCA 59.379 50.000 0.00 0.00 0.00 3.41
440 451 2.884012 AGTCAGTCAGTCAGTCAGTCAG 59.116 50.000 0.00 0.00 0.00 3.51
441 452 2.621055 GTCAGTCAGTCAGTCAGTCAGT 59.379 50.000 0.00 0.00 0.00 3.41
442 453 2.881513 TCAGTCAGTCAGTCAGTCAGTC 59.118 50.000 0.00 0.00 0.00 3.51
443 454 2.620585 CAGTCAGTCAGTCAGTCAGTCA 59.379 50.000 0.00 0.00 0.00 3.41
454 465 4.342378 AGTCAGTCAGTCAGCAGAAACTTA 59.658 41.667 0.00 0.00 0.00 2.24
559 577 3.434319 GGCATGCCACTGTCACCG 61.434 66.667 32.08 0.00 35.81 4.94
560 578 4.107051 GCATGCCACTGTCACCGC 62.107 66.667 6.36 0.00 0.00 5.68
561 579 2.669229 CATGCCACTGTCACCGCA 60.669 61.111 0.00 0.00 35.35 5.69
562 580 2.359107 ATGCCACTGTCACCGCAG 60.359 61.111 0.00 0.00 41.92 5.18
597 615 4.494091 TCAATTCAAACCCAGCCAAAAA 57.506 36.364 0.00 0.00 0.00 1.94
617 636 1.978617 CCCACCAATCAGGCCACAC 60.979 63.158 5.01 0.00 43.14 3.82
654 676 4.003788 CGCGGGTTGACCACTCCT 62.004 66.667 0.00 0.00 40.22 3.69
780 802 0.459899 TCGACGGTGCAGAGCAATAT 59.540 50.000 0.00 0.00 41.47 1.28
781 803 1.679153 TCGACGGTGCAGAGCAATATA 59.321 47.619 0.00 0.00 41.47 0.86
782 804 1.787155 CGACGGTGCAGAGCAATATAC 59.213 52.381 0.00 0.00 41.47 1.47
785 807 4.230657 GACGGTGCAGAGCAATATACTAG 58.769 47.826 0.00 0.00 41.47 2.57
808 830 6.069331 AGTACAACTCCAAGAACTCACTCTA 58.931 40.000 0.00 0.00 0.00 2.43
851 903 3.463329 CCTCAATCCTCCCCTAATCCAAA 59.537 47.826 0.00 0.00 0.00 3.28
928 980 1.789576 AATTCGGTTCCCCTGCCACT 61.790 55.000 0.00 0.00 0.00 4.00
929 981 2.484287 ATTCGGTTCCCCTGCCACTG 62.484 60.000 0.00 0.00 0.00 3.66
932 984 4.284550 GTTCCCCTGCCACTGCCA 62.285 66.667 0.00 0.00 36.33 4.92
933 985 4.284550 TTCCCCTGCCACTGCCAC 62.285 66.667 0.00 0.00 36.33 5.01
964 1016 1.000274 ACTGCCACGCCAATTCTTTTC 60.000 47.619 0.00 0.00 0.00 2.29
974 1026 0.324368 AATTCTTTTCCCTCGGCCCC 60.324 55.000 0.00 0.00 0.00 5.80
1013 1065 2.506061 CCGGGATGCTCTCCTCCAG 61.506 68.421 0.00 0.00 44.28 3.86
1103 1160 2.328099 CCTTCTTTTGCGCGGCTCT 61.328 57.895 8.83 0.00 0.00 4.09
1177 1236 2.632377 GATTCGGTTTCCATGAGCTGA 58.368 47.619 0.00 0.00 0.00 4.26
1178 1237 2.099141 TTCGGTTTCCATGAGCTGAG 57.901 50.000 0.00 0.00 0.00 3.35
1179 1238 0.391661 TCGGTTTCCATGAGCTGAGC 60.392 55.000 0.00 0.00 0.00 4.26
1180 1239 0.392193 CGGTTTCCATGAGCTGAGCT 60.392 55.000 6.69 6.69 43.88 4.09
1181 1240 1.093159 GGTTTCCATGAGCTGAGCTG 58.907 55.000 13.71 0.00 39.88 4.24
1365 1440 2.754552 TCGCCAATTCATTTCTCCCTTG 59.245 45.455 0.00 0.00 0.00 3.61
1446 1529 4.502087 GGTTCTTGGTTTACTACTGTCCGT 60.502 45.833 0.00 0.00 0.00 4.69
1579 1662 2.045926 GATCGGGTGGTGCAGCTT 60.046 61.111 18.08 0.00 31.98 3.74
1597 1680 0.967887 TTGAGGAGGAGCTGAGGACG 60.968 60.000 0.00 0.00 0.00 4.79
1606 1689 3.068691 CTGAGGACGGAGCGGGAA 61.069 66.667 0.00 0.00 0.00 3.97
1747 1839 2.411676 CGAGTCGCTCATATACCAGACG 60.412 54.545 0.00 0.00 34.21 4.18
2788 2880 2.032376 TCGCTCAGCAACATGGCA 59.968 55.556 0.00 0.00 35.83 4.92
2956 3051 5.723887 TCTCTTCAGGAGGAAAAGCTTCTAT 59.276 40.000 0.00 0.00 42.10 1.98
2991 3086 2.799207 CGCCAGTGCACACTTGAATTTT 60.799 45.455 21.04 0.00 40.20 1.82
2993 3088 3.983344 GCCAGTGCACACTTGAATTTTAG 59.017 43.478 21.04 0.00 40.20 1.85
2994 3089 4.499696 GCCAGTGCACACTTGAATTTTAGT 60.500 41.667 21.04 0.00 40.20 2.24
2995 3090 5.215160 CCAGTGCACACTTGAATTTTAGTC 58.785 41.667 21.04 0.00 40.20 2.59
2996 3091 5.221028 CCAGTGCACACTTGAATTTTAGTCA 60.221 40.000 21.04 0.00 40.20 3.41
3000 3095 4.558697 GCACACTTGAATTTTAGTCACCCC 60.559 45.833 0.00 0.00 0.00 4.95
3001 3096 4.582656 CACACTTGAATTTTAGTCACCCCA 59.417 41.667 0.00 0.00 0.00 4.96
3081 3183 9.534565 GATGTTCTTGCATCTATCTAACTGTTA 57.465 33.333 0.00 0.00 41.35 2.41
3083 3185 8.531982 TGTTCTTGCATCTATCTAACTGTTACT 58.468 33.333 0.00 0.00 0.00 2.24
3135 3237 0.039978 AGAGTCGCTGTCACTTGTCG 60.040 55.000 0.00 0.00 0.00 4.35
3173 3276 4.699257 AGGCTGAAAGATGAACAGATTGAC 59.301 41.667 0.00 0.00 34.07 3.18
3174 3277 4.456911 GGCTGAAAGATGAACAGATTGACA 59.543 41.667 0.00 0.00 34.07 3.58
3200 3303 3.604065 CATGTCTGATGTACATGCTGC 57.396 47.619 14.43 0.00 45.43 5.25
3203 3306 4.470334 TGTCTGATGTACATGCTGCTTA 57.530 40.909 14.43 0.00 0.00 3.09
3249 3352 5.105063 CACAGTGATGCGATTAGAAGAAGA 58.895 41.667 0.00 0.00 0.00 2.87
3268 3371 1.495579 ATGCAGCCCCTGACAAGTCT 61.496 55.000 1.53 0.00 32.44 3.24
3271 3374 1.677217 GCAGCCCCTGACAAGTCTTAG 60.677 57.143 1.53 0.00 32.44 2.18
3318 3423 1.272769 ACGTGAGGTTCTAGAAGCACC 59.727 52.381 30.59 22.61 40.96 5.01
3354 3459 2.028130 TCGCCATTTGTCAGTGGTTTT 58.972 42.857 7.83 0.00 37.81 2.43
3358 3463 2.865551 CCATTTGTCAGTGGTTTTGTGC 59.134 45.455 0.00 0.00 0.00 4.57
3390 3495 1.974265 TTTCGCCATTTGTCAGTGGA 58.026 45.000 9.80 0.00 37.72 4.02
3392 3497 2.198827 TCGCCATTTGTCAGTGGATT 57.801 45.000 9.80 0.00 37.72 3.01
3431 3538 4.894784 ACAGTACCAGTACTTGATGTTGG 58.105 43.478 7.74 0.00 43.35 3.77
3440 3547 1.946768 ACTTGATGTTGGTCGTTGGTG 59.053 47.619 0.00 0.00 0.00 4.17
3457 3564 2.309755 TGGTGAGAAGAAGAATGGCCAT 59.690 45.455 14.09 14.09 0.00 4.40
3523 3650 1.029681 GGCACCGTTGTTTTCCTTCT 58.970 50.000 0.00 0.00 0.00 2.85
3575 3801 2.278332 ACCAGAAAAAGGTCTCAGCC 57.722 50.000 0.00 0.00 32.90 4.85
3597 3826 6.016443 AGCCCATACGTATTCAGTACTCTTAC 60.016 42.308 5.03 0.00 0.00 2.34
3616 3845 8.330247 ACTCTTACTAGTCCAGACTCTGAATTA 58.670 37.037 7.69 0.00 42.54 1.40
3637 3867 4.590400 ATCGCTTCTTTCATCTTCGTTG 57.410 40.909 0.00 0.00 0.00 4.10
3677 3907 1.204941 GGATTCACTCGTGTGGTAGCT 59.795 52.381 16.88 0.00 43.94 3.32
3747 3977 2.202570 CATGCTTTGCTGGCTCGC 60.203 61.111 0.00 0.00 0.00 5.03
3748 3978 3.446570 ATGCTTTGCTGGCTCGCC 61.447 61.111 0.00 0.00 0.00 5.54
3749 3979 4.953010 TGCTTTGCTGGCTCGCCA 62.953 61.111 10.64 10.64 45.02 5.69
3759 3989 4.443266 GCTCGCCAGCTCGACCTT 62.443 66.667 0.00 0.00 43.09 3.50
3760 3990 2.262915 CTCGCCAGCTCGACCTTT 59.737 61.111 0.00 0.00 34.46 3.11
3761 3991 1.374758 CTCGCCAGCTCGACCTTTT 60.375 57.895 0.00 0.00 34.46 2.27
3762 3992 0.108804 CTCGCCAGCTCGACCTTTTA 60.109 55.000 0.00 0.00 34.46 1.52
3763 3993 0.319083 TCGCCAGCTCGACCTTTTAA 59.681 50.000 0.00 0.00 33.02 1.52
3764 3994 1.066430 TCGCCAGCTCGACCTTTTAAT 60.066 47.619 0.00 0.00 33.02 1.40
3765 3995 1.737793 CGCCAGCTCGACCTTTTAATT 59.262 47.619 0.00 0.00 0.00 1.40
3766 3996 2.223044 CGCCAGCTCGACCTTTTAATTC 60.223 50.000 0.00 0.00 0.00 2.17
3767 3997 2.747446 GCCAGCTCGACCTTTTAATTCA 59.253 45.455 0.00 0.00 0.00 2.57
3768 3998 3.378427 GCCAGCTCGACCTTTTAATTCAT 59.622 43.478 0.00 0.00 0.00 2.57
3769 3999 4.496507 GCCAGCTCGACCTTTTAATTCATC 60.497 45.833 0.00 0.00 0.00 2.92
3770 4000 4.635765 CCAGCTCGACCTTTTAATTCATCA 59.364 41.667 0.00 0.00 0.00 3.07
3771 4001 5.447818 CCAGCTCGACCTTTTAATTCATCAC 60.448 44.000 0.00 0.00 0.00 3.06
3772 4002 5.122239 CAGCTCGACCTTTTAATTCATCACA 59.878 40.000 0.00 0.00 0.00 3.58
3773 4003 5.705441 AGCTCGACCTTTTAATTCATCACAA 59.295 36.000 0.00 0.00 0.00 3.33
3774 4004 6.024049 GCTCGACCTTTTAATTCATCACAAG 58.976 40.000 0.00 0.00 0.00 3.16
3775 4005 6.348540 GCTCGACCTTTTAATTCATCACAAGT 60.349 38.462 0.00 0.00 0.00 3.16
3776 4006 7.504924 TCGACCTTTTAATTCATCACAAGTT 57.495 32.000 0.00 0.00 0.00 2.66
3777 4007 8.610248 TCGACCTTTTAATTCATCACAAGTTA 57.390 30.769 0.00 0.00 0.00 2.24
3778 4008 9.226606 TCGACCTTTTAATTCATCACAAGTTAT 57.773 29.630 0.00 0.00 0.00 1.89
3779 4009 9.490663 CGACCTTTTAATTCATCACAAGTTATC 57.509 33.333 0.00 0.00 0.00 1.75
3780 4010 9.788960 GACCTTTTAATTCATCACAAGTTATCC 57.211 33.333 0.00 0.00 0.00 2.59
3781 4011 8.749354 ACCTTTTAATTCATCACAAGTTATCCC 58.251 33.333 0.00 0.00 0.00 3.85
3782 4012 8.748412 CCTTTTAATTCATCACAAGTTATCCCA 58.252 33.333 0.00 0.00 0.00 4.37
3788 4018 9.872684 AATTCATCACAAGTTATCCCATTATCT 57.127 29.630 0.00 0.00 0.00 1.98
3789 4019 9.872684 ATTCATCACAAGTTATCCCATTATCTT 57.127 29.630 0.00 0.00 0.00 2.40
3790 4020 8.908786 TCATCACAAGTTATCCCATTATCTTC 57.091 34.615 0.00 0.00 0.00 2.87
3791 4021 8.717717 TCATCACAAGTTATCCCATTATCTTCT 58.282 33.333 0.00 0.00 0.00 2.85
3792 4022 8.781196 CATCACAAGTTATCCCATTATCTTCTG 58.219 37.037 0.00 0.00 0.00 3.02
3793 4023 7.861629 TCACAAGTTATCCCATTATCTTCTGT 58.138 34.615 0.00 0.00 0.00 3.41
3794 4024 7.987458 TCACAAGTTATCCCATTATCTTCTGTC 59.013 37.037 0.00 0.00 0.00 3.51
3795 4025 7.770433 CACAAGTTATCCCATTATCTTCTGTCA 59.230 37.037 0.00 0.00 0.00 3.58
3796 4026 7.989741 ACAAGTTATCCCATTATCTTCTGTCAG 59.010 37.037 0.00 0.00 0.00 3.51
3797 4027 7.921041 AGTTATCCCATTATCTTCTGTCAGA 57.079 36.000 0.00 0.00 0.00 3.27
3798 4028 7.731054 AGTTATCCCATTATCTTCTGTCAGAC 58.269 38.462 0.78 0.00 0.00 3.51
3799 4029 7.345653 AGTTATCCCATTATCTTCTGTCAGACA 59.654 37.037 0.78 2.48 0.00 3.41
3800 4030 6.566079 ATCCCATTATCTTCTGTCAGACAA 57.434 37.500 4.41 0.00 0.00 3.18
3801 4031 6.373005 TCCCATTATCTTCTGTCAGACAAA 57.627 37.500 4.41 1.86 0.00 2.83
3802 4032 6.778821 TCCCATTATCTTCTGTCAGACAAAA 58.221 36.000 4.41 0.00 0.00 2.44
3803 4033 7.230747 TCCCATTATCTTCTGTCAGACAAAAA 58.769 34.615 4.41 1.56 0.00 1.94
3835 4065 5.637006 TTGCAAACATATAGGGTGTGTTC 57.363 39.130 0.00 0.00 40.72 3.18
3836 4066 4.657013 TGCAAACATATAGGGTGTGTTCA 58.343 39.130 0.00 0.00 40.72 3.18
3837 4067 4.699735 TGCAAACATATAGGGTGTGTTCAG 59.300 41.667 0.00 0.00 40.72 3.02
3838 4068 4.700213 GCAAACATATAGGGTGTGTTCAGT 59.300 41.667 0.00 0.00 40.72 3.41
3839 4069 5.183140 GCAAACATATAGGGTGTGTTCAGTT 59.817 40.000 0.00 0.00 40.72 3.16
3840 4070 6.611381 CAAACATATAGGGTGTGTTCAGTTG 58.389 40.000 0.00 0.00 40.72 3.16
3841 4071 5.755409 ACATATAGGGTGTGTTCAGTTGA 57.245 39.130 0.00 0.00 0.00 3.18
3842 4072 6.121776 ACATATAGGGTGTGTTCAGTTGAA 57.878 37.500 0.00 0.00 0.00 2.69
3843 4073 6.173339 ACATATAGGGTGTGTTCAGTTGAAG 58.827 40.000 0.00 0.00 34.27 3.02
3844 4074 2.348411 AGGGTGTGTTCAGTTGAAGG 57.652 50.000 0.00 0.00 34.27 3.46
3845 4075 1.133792 AGGGTGTGTTCAGTTGAAGGG 60.134 52.381 0.00 0.00 34.27 3.95
3846 4076 1.133915 GGGTGTGTTCAGTTGAAGGGA 60.134 52.381 0.00 0.00 34.27 4.20
3847 4077 1.947456 GGTGTGTTCAGTTGAAGGGAC 59.053 52.381 0.00 0.00 34.27 4.46
3848 4078 1.597663 GTGTGTTCAGTTGAAGGGACG 59.402 52.381 0.00 0.00 34.27 4.79
3849 4079 1.226746 GTGTTCAGTTGAAGGGACGG 58.773 55.000 0.00 0.00 34.27 4.79
3850 4080 0.534203 TGTTCAGTTGAAGGGACGGC 60.534 55.000 0.00 0.00 34.27 5.68
3851 4081 1.072505 TTCAGTTGAAGGGACGGCC 59.927 57.895 0.00 0.00 0.00 6.13
3852 4082 1.415672 TTCAGTTGAAGGGACGGCCT 61.416 55.000 7.57 0.00 0.00 5.19
3853 4083 1.672356 CAGTTGAAGGGACGGCCTG 60.672 63.158 7.57 0.00 0.00 4.85
3854 4084 2.359975 GTTGAAGGGACGGCCTGG 60.360 66.667 7.57 0.00 0.00 4.45
3855 4085 2.528127 TTGAAGGGACGGCCTGGA 60.528 61.111 7.57 0.00 0.00 3.86
3856 4086 2.150719 TTGAAGGGACGGCCTGGAA 61.151 57.895 7.57 0.00 0.00 3.53
3857 4087 1.497309 TTGAAGGGACGGCCTGGAAT 61.497 55.000 7.57 0.00 0.00 3.01
3858 4088 1.452108 GAAGGGACGGCCTGGAATG 60.452 63.158 7.57 0.00 0.00 2.67
3859 4089 2.893682 GAAGGGACGGCCTGGAATGG 62.894 65.000 7.57 0.00 0.00 3.16
3867 4097 2.438434 CCTGGAATGGCACGGGTC 60.438 66.667 0.00 0.00 0.00 4.46
3868 4098 2.438434 CTGGAATGGCACGGGTCC 60.438 66.667 0.00 0.00 0.00 4.46
3869 4099 4.402528 TGGAATGGCACGGGTCCG 62.403 66.667 7.97 7.97 46.03 4.79
3870 4100 4.090588 GGAATGGCACGGGTCCGA 62.091 66.667 16.90 0.00 42.83 4.55
3871 4101 2.818274 GAATGGCACGGGTCCGAC 60.818 66.667 16.90 7.45 42.83 4.79
3872 4102 4.404098 AATGGCACGGGTCCGACC 62.404 66.667 16.90 16.09 42.83 4.79
3892 4122 3.162154 CCCCTAGCCCCCGTTCTC 61.162 72.222 0.00 0.00 0.00 2.87
3893 4123 3.537874 CCCTAGCCCCCGTTCTCG 61.538 72.222 0.00 0.00 0.00 4.04
3894 4124 4.222847 CCTAGCCCCCGTTCTCGC 62.223 72.222 0.00 0.00 35.54 5.03
3895 4125 4.570663 CTAGCCCCCGTTCTCGCG 62.571 72.222 0.00 0.00 35.54 5.87
3899 4129 4.367023 CCCCCGTTCTCGCGTTCA 62.367 66.667 5.77 0.00 35.54 3.18
3900 4130 2.809601 CCCCGTTCTCGCGTTCAG 60.810 66.667 5.77 0.00 35.54 3.02
3901 4131 2.049433 CCCGTTCTCGCGTTCAGT 60.049 61.111 5.77 0.00 35.54 3.41
3902 4132 1.663702 CCCGTTCTCGCGTTCAGTT 60.664 57.895 5.77 0.00 35.54 3.16
3903 4133 0.387622 CCCGTTCTCGCGTTCAGTTA 60.388 55.000 5.77 0.00 35.54 2.24
3904 4134 1.411394 CCGTTCTCGCGTTCAGTTAA 58.589 50.000 5.77 0.00 35.54 2.01
3905 4135 1.788308 CCGTTCTCGCGTTCAGTTAAA 59.212 47.619 5.77 0.00 35.54 1.52
3906 4136 2.219216 CCGTTCTCGCGTTCAGTTAAAA 59.781 45.455 5.77 0.00 35.54 1.52
3907 4137 3.120786 CCGTTCTCGCGTTCAGTTAAAAT 60.121 43.478 5.77 0.00 35.54 1.82
3908 4138 4.451557 CGTTCTCGCGTTCAGTTAAAATT 58.548 39.130 5.77 0.00 0.00 1.82
3909 4139 4.314708 CGTTCTCGCGTTCAGTTAAAATTG 59.685 41.667 5.77 0.00 0.00 2.32
3910 4140 4.398549 TCTCGCGTTCAGTTAAAATTGG 57.601 40.909 5.77 0.00 0.00 3.16
3911 4141 3.187637 TCTCGCGTTCAGTTAAAATTGGG 59.812 43.478 5.77 0.00 0.00 4.12
3912 4142 3.139850 TCGCGTTCAGTTAAAATTGGGA 58.860 40.909 5.77 0.00 0.00 4.37
3913 4143 3.058777 TCGCGTTCAGTTAAAATTGGGAC 60.059 43.478 5.77 0.00 0.00 4.46
3914 4144 3.231160 GCGTTCAGTTAAAATTGGGACG 58.769 45.455 9.13 9.13 32.95 4.79
3915 4145 3.817238 CGTTCAGTTAAAATTGGGACGG 58.183 45.455 0.00 0.00 0.00 4.79
3916 4146 3.365565 CGTTCAGTTAAAATTGGGACGGG 60.366 47.826 0.00 0.00 0.00 5.28
3917 4147 2.164338 TCAGTTAAAATTGGGACGGGC 58.836 47.619 0.00 0.00 0.00 6.13
3918 4148 1.889829 CAGTTAAAATTGGGACGGGCA 59.110 47.619 0.00 0.00 0.00 5.36
3919 4149 1.890489 AGTTAAAATTGGGACGGGCAC 59.110 47.619 0.00 0.00 0.00 5.01
3921 4151 1.587933 TAAAATTGGGACGGGCACGC 61.588 55.000 9.12 0.00 46.04 5.34
3922 4152 4.652131 AATTGGGACGGGCACGCA 62.652 61.111 9.12 0.00 46.04 5.24
3933 4163 4.643387 GCACGCACTGGTTCCCCT 62.643 66.667 0.00 0.00 0.00 4.79
3934 4164 2.358737 CACGCACTGGTTCCCCTC 60.359 66.667 0.00 0.00 0.00 4.30
3935 4165 4.003788 ACGCACTGGTTCCCCTCG 62.004 66.667 0.00 0.00 0.00 4.63
3936 4166 3.691342 CGCACTGGTTCCCCTCGA 61.691 66.667 0.00 0.00 0.00 4.04
3937 4167 2.266055 GCACTGGTTCCCCTCGAG 59.734 66.667 5.13 5.13 0.00 4.04
3938 4168 2.266055 CACTGGTTCCCCTCGAGC 59.734 66.667 6.99 0.00 0.00 5.03
3939 4169 3.382832 ACTGGTTCCCCTCGAGCG 61.383 66.667 6.99 0.00 0.00 5.03
3940 4170 3.068691 CTGGTTCCCCTCGAGCGA 61.069 66.667 6.99 1.14 0.00 4.93
3941 4171 2.602267 TGGTTCCCCTCGAGCGAA 60.602 61.111 6.99 7.98 0.00 4.70
3942 4172 1.961180 CTGGTTCCCCTCGAGCGAAT 61.961 60.000 6.99 0.00 0.00 3.34
3943 4173 0.685131 TGGTTCCCCTCGAGCGAATA 60.685 55.000 6.99 2.23 0.00 1.75
3944 4174 0.680061 GGTTCCCCTCGAGCGAATAT 59.320 55.000 6.99 0.00 0.00 1.28
3945 4175 1.070289 GGTTCCCCTCGAGCGAATATT 59.930 52.381 6.99 0.00 0.00 1.28
3946 4176 2.405172 GTTCCCCTCGAGCGAATATTC 58.595 52.381 6.99 5.30 0.00 1.75
3947 4177 0.966920 TCCCCTCGAGCGAATATTCC 59.033 55.000 6.99 3.20 0.00 3.01
3948 4178 0.388649 CCCCTCGAGCGAATATTCCG 60.389 60.000 6.99 7.90 0.00 4.30
3954 4184 4.771127 GCGAATATTCCGCCCAGA 57.229 55.556 16.50 0.00 46.22 3.86
3955 4185 3.233355 GCGAATATTCCGCCCAGAT 57.767 52.632 16.50 0.00 46.22 2.90
3956 4186 0.798776 GCGAATATTCCGCCCAGATG 59.201 55.000 16.50 0.53 46.22 2.90
3957 4187 0.798776 CGAATATTCCGCCCAGATGC 59.201 55.000 9.87 0.00 0.00 3.91
3978 4208 3.498927 GGAACGAAGTCATACCTCGAA 57.501 47.619 5.16 0.00 45.00 3.71
3979 4209 3.841643 GGAACGAAGTCATACCTCGAAA 58.158 45.455 5.16 0.00 45.00 3.46
3980 4210 4.240096 GGAACGAAGTCATACCTCGAAAA 58.760 43.478 5.16 0.00 45.00 2.29
3981 4211 4.091075 GGAACGAAGTCATACCTCGAAAAC 59.909 45.833 5.16 0.00 45.00 2.43
3982 4212 3.240069 ACGAAGTCATACCTCGAAAACG 58.760 45.455 5.16 0.00 29.74 3.60
3983 4213 2.597305 CGAAGTCATACCTCGAAAACGG 59.403 50.000 0.00 0.00 0.00 4.44
3984 4214 3.582780 GAAGTCATACCTCGAAAACGGT 58.417 45.455 0.00 0.00 37.31 4.83
3985 4215 3.227810 AGTCATACCTCGAAAACGGTC 57.772 47.619 0.00 0.00 34.76 4.79
3986 4216 1.916000 GTCATACCTCGAAAACGGTCG 59.084 52.381 0.00 0.00 42.48 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.003788 CACGGCACCGGAAGTCCT 62.004 66.667 9.46 0.00 44.69 3.85
3 4 3.310860 ATCCACGGCACCGGAAGTC 62.311 63.158 9.46 0.00 44.69 3.01
4 5 3.310860 GATCCACGGCACCGGAAGT 62.311 63.158 9.46 0.00 44.69 3.01
5 6 2.511600 GATCCACGGCACCGGAAG 60.512 66.667 9.46 0.15 44.69 3.46
6 7 3.000819 AGATCCACGGCACCGGAA 61.001 61.111 9.46 0.00 44.69 4.30
7 8 3.770040 CAGATCCACGGCACCGGA 61.770 66.667 9.46 2.09 44.69 5.14
8 9 4.838152 CCAGATCCACGGCACCGG 62.838 72.222 14.51 0.00 44.69 5.28
9 10 2.593468 ATTCCAGATCCACGGCACCG 62.593 60.000 7.71 7.71 46.03 4.94
10 11 0.394352 AATTCCAGATCCACGGCACC 60.394 55.000 0.00 0.00 0.00 5.01
11 12 1.401905 GAAATTCCAGATCCACGGCAC 59.598 52.381 0.00 0.00 0.00 5.01
12 13 1.681780 GGAAATTCCAGATCCACGGCA 60.682 52.381 7.23 0.00 36.28 5.69
13 14 1.025041 GGAAATTCCAGATCCACGGC 58.975 55.000 7.23 0.00 36.28 5.68
14 15 2.418368 TGGAAATTCCAGATCCACGG 57.582 50.000 11.23 0.00 42.67 4.94
32 33 1.874019 CGAGGATTCTCCACGCGTG 60.874 63.158 31.77 31.77 43.07 5.34
33 34 2.490217 CGAGGATTCTCCACGCGT 59.510 61.111 5.58 5.58 43.07 6.01
37 38 0.462581 TGCATGCGAGGATTCTCCAC 60.463 55.000 14.09 0.00 39.61 4.02
38 39 0.462581 GTGCATGCGAGGATTCTCCA 60.463 55.000 14.09 0.00 39.61 3.86
39 40 0.179062 AGTGCATGCGAGGATTCTCC 60.179 55.000 14.09 0.00 36.70 3.71
40 41 0.935898 CAGTGCATGCGAGGATTCTC 59.064 55.000 14.09 0.00 36.69 2.87
41 42 0.538584 TCAGTGCATGCGAGGATTCT 59.461 50.000 14.09 0.00 0.00 2.40
42 43 0.654683 GTCAGTGCATGCGAGGATTC 59.345 55.000 14.09 0.00 0.00 2.52
43 44 0.036105 TGTCAGTGCATGCGAGGATT 60.036 50.000 14.09 0.00 0.00 3.01
44 45 0.742281 GTGTCAGTGCATGCGAGGAT 60.742 55.000 14.09 0.00 0.00 3.24
45 46 1.374631 GTGTCAGTGCATGCGAGGA 60.375 57.895 14.09 7.05 0.00 3.71
46 47 1.022982 ATGTGTCAGTGCATGCGAGG 61.023 55.000 14.09 4.51 0.00 4.63
47 48 0.096454 CATGTGTCAGTGCATGCGAG 59.904 55.000 14.09 5.31 36.49 5.03
48 49 0.603439 ACATGTGTCAGTGCATGCGA 60.603 50.000 14.09 0.81 44.43 5.10
49 50 0.239082 AACATGTGTCAGTGCATGCG 59.761 50.000 14.09 0.00 44.43 4.73
50 51 2.427232 AAACATGTGTCAGTGCATGC 57.573 45.000 11.82 11.82 44.43 4.06
75 76 5.461032 TTACATTGCCAGTAAAACCTTGG 57.539 39.130 0.00 0.00 35.06 3.61
76 77 6.983890 ACTTTTACATTGCCAGTAAAACCTTG 59.016 34.615 11.72 7.19 42.96 3.61
77 78 6.983890 CACTTTTACATTGCCAGTAAAACCTT 59.016 34.615 11.72 1.61 42.96 3.50
78 79 6.462347 CCACTTTTACATTGCCAGTAAAACCT 60.462 38.462 11.72 2.02 42.96 3.50
79 80 5.694458 CCACTTTTACATTGCCAGTAAAACC 59.306 40.000 11.72 0.00 42.96 3.27
80 81 6.508777 TCCACTTTTACATTGCCAGTAAAAC 58.491 36.000 11.72 0.00 42.96 2.43
81 82 6.716934 TCCACTTTTACATTGCCAGTAAAA 57.283 33.333 13.84 13.84 44.57 1.52
82 83 6.716934 TTCCACTTTTACATTGCCAGTAAA 57.283 33.333 0.00 0.00 39.07 2.01
83 84 6.547880 TCTTTCCACTTTTACATTGCCAGTAA 59.452 34.615 0.00 0.00 0.00 2.24
84 85 6.016610 GTCTTTCCACTTTTACATTGCCAGTA 60.017 38.462 0.00 0.00 0.00 2.74
85 86 4.892934 TCTTTCCACTTTTACATTGCCAGT 59.107 37.500 0.00 0.00 0.00 4.00
86 87 5.222631 GTCTTTCCACTTTTACATTGCCAG 58.777 41.667 0.00 0.00 0.00 4.85
87 88 4.261405 CGTCTTTCCACTTTTACATTGCCA 60.261 41.667 0.00 0.00 0.00 4.92
88 89 4.226761 CGTCTTTCCACTTTTACATTGCC 58.773 43.478 0.00 0.00 0.00 4.52
89 90 4.855531 ACGTCTTTCCACTTTTACATTGC 58.144 39.130 0.00 0.00 0.00 3.56
90 91 7.111041 CGTTTACGTCTTTCCACTTTTACATTG 59.889 37.037 0.00 0.00 34.11 2.82
91 92 7.127686 CGTTTACGTCTTTCCACTTTTACATT 58.872 34.615 0.00 0.00 34.11 2.71
92 93 6.293027 CCGTTTACGTCTTTCCACTTTTACAT 60.293 38.462 0.00 0.00 37.74 2.29
93 94 5.006552 CCGTTTACGTCTTTCCACTTTTACA 59.993 40.000 0.00 0.00 37.74 2.41
94 95 5.434706 CCGTTTACGTCTTTCCACTTTTAC 58.565 41.667 0.00 0.00 37.74 2.01
95 96 4.024977 GCCGTTTACGTCTTTCCACTTTTA 60.025 41.667 0.00 0.00 37.74 1.52
96 97 3.242837 GCCGTTTACGTCTTTCCACTTTT 60.243 43.478 0.00 0.00 37.74 2.27
97 98 2.288729 GCCGTTTACGTCTTTCCACTTT 59.711 45.455 0.00 0.00 37.74 2.66
98 99 1.869132 GCCGTTTACGTCTTTCCACTT 59.131 47.619 0.00 0.00 37.74 3.16
99 100 1.069668 AGCCGTTTACGTCTTTCCACT 59.930 47.619 0.00 0.00 37.74 4.00
100 101 1.505425 AGCCGTTTACGTCTTTCCAC 58.495 50.000 0.00 0.00 37.74 4.02
101 102 2.243602 AAGCCGTTTACGTCTTTCCA 57.756 45.000 0.00 0.00 33.50 3.53
102 103 3.059166 TGTAAGCCGTTTACGTCTTTCC 58.941 45.455 3.83 0.00 43.78 3.13
103 104 4.209911 ACTTGTAAGCCGTTTACGTCTTTC 59.790 41.667 3.83 0.28 43.78 2.62
104 105 4.122046 ACTTGTAAGCCGTTTACGTCTTT 58.878 39.130 3.83 0.00 43.78 2.52
105 106 3.721035 ACTTGTAAGCCGTTTACGTCTT 58.279 40.909 3.99 3.99 43.78 3.01
106 107 3.375782 ACTTGTAAGCCGTTTACGTCT 57.624 42.857 0.00 0.00 43.78 4.18
107 108 3.058129 CGTACTTGTAAGCCGTTTACGTC 59.942 47.826 0.00 0.00 43.78 4.34
108 109 2.979813 CGTACTTGTAAGCCGTTTACGT 59.020 45.455 0.00 0.00 43.78 3.57
109 110 2.979813 ACGTACTTGTAAGCCGTTTACG 59.020 45.455 9.01 9.01 43.78 3.18
110 111 5.154222 ACTACGTACTTGTAAGCCGTTTAC 58.846 41.667 12.88 0.00 41.68 2.01
111 112 5.371115 ACTACGTACTTGTAAGCCGTTTA 57.629 39.130 12.88 0.00 37.80 2.01
112 113 4.243007 ACTACGTACTTGTAAGCCGTTT 57.757 40.909 12.88 2.23 37.80 3.60
113 114 3.923017 ACTACGTACTTGTAAGCCGTT 57.077 42.857 12.88 0.00 37.80 4.44
114 115 4.003648 ACTACTACGTACTTGTAAGCCGT 58.996 43.478 12.45 12.45 39.32 5.68
115 116 4.606457 ACTACTACGTACTTGTAAGCCG 57.394 45.455 0.00 3.65 0.00 5.52
116 117 5.493735 CGTACTACTACGTACTTGTAAGCC 58.506 45.833 0.00 0.00 40.83 4.35
129 130 5.032863 CACTGCATAACCACGTACTACTAC 58.967 45.833 0.00 0.00 0.00 2.73
130 131 4.701651 ACACTGCATAACCACGTACTACTA 59.298 41.667 0.00 0.00 0.00 1.82
131 132 3.508793 ACACTGCATAACCACGTACTACT 59.491 43.478 0.00 0.00 0.00 2.57
132 133 3.841643 ACACTGCATAACCACGTACTAC 58.158 45.455 0.00 0.00 0.00 2.73
133 134 4.524316 AACACTGCATAACCACGTACTA 57.476 40.909 0.00 0.00 0.00 1.82
134 135 3.396260 AACACTGCATAACCACGTACT 57.604 42.857 0.00 0.00 0.00 2.73
135 136 4.687483 AGTTAACACTGCATAACCACGTAC 59.313 41.667 8.61 0.00 33.47 3.67
136 137 4.687018 CAGTTAACACTGCATAACCACGTA 59.313 41.667 8.61 0.00 44.16 3.57
137 138 3.496884 CAGTTAACACTGCATAACCACGT 59.503 43.478 8.61 0.00 44.16 4.49
138 139 4.065423 CAGTTAACACTGCATAACCACG 57.935 45.455 8.61 0.00 44.16 4.94
149 150 3.141398 CATGGTGTCAGCAGTTAACACT 58.859 45.455 10.94 1.66 42.26 3.55
150 151 3.058914 GTCATGGTGTCAGCAGTTAACAC 60.059 47.826 10.94 0.00 41.97 3.32
151 152 3.138304 GTCATGGTGTCAGCAGTTAACA 58.862 45.455 10.94 0.00 0.00 2.41
152 153 3.138304 TGTCATGGTGTCAGCAGTTAAC 58.862 45.455 10.94 0.00 0.00 2.01
153 154 3.483808 TGTCATGGTGTCAGCAGTTAA 57.516 42.857 10.94 0.00 0.00 2.01
154 155 3.337358 CATGTCATGGTGTCAGCAGTTA 58.663 45.455 10.94 0.00 0.00 2.24
155 156 2.156917 CATGTCATGGTGTCAGCAGTT 58.843 47.619 10.94 0.00 0.00 3.16
156 157 1.817357 CATGTCATGGTGTCAGCAGT 58.183 50.000 10.94 0.00 0.00 4.40
157 158 0.450583 GCATGTCATGGTGTCAGCAG 59.549 55.000 14.64 3.39 0.00 4.24
158 159 0.961857 GGCATGTCATGGTGTCAGCA 60.962 55.000 14.64 7.27 0.00 4.41
159 160 1.805254 GGCATGTCATGGTGTCAGC 59.195 57.895 14.64 0.00 0.00 4.26
160 161 0.391528 TCGGCATGTCATGGTGTCAG 60.392 55.000 14.64 0.00 0.00 3.51
161 162 0.252761 ATCGGCATGTCATGGTGTCA 59.747 50.000 14.64 0.00 0.00 3.58
162 163 1.382522 AATCGGCATGTCATGGTGTC 58.617 50.000 14.64 0.00 0.00 3.67
163 164 1.745087 GAAATCGGCATGTCATGGTGT 59.255 47.619 14.64 0.00 0.00 4.16
164 165 1.268184 CGAAATCGGCATGTCATGGTG 60.268 52.381 14.64 0.00 35.37 4.17
165 166 1.016627 CGAAATCGGCATGTCATGGT 58.983 50.000 14.64 0.00 35.37 3.55
166 167 1.016627 ACGAAATCGGCATGTCATGG 58.983 50.000 14.64 0.00 44.95 3.66
167 168 2.830772 AACGAAATCGGCATGTCATG 57.169 45.000 8.56 8.56 44.95 3.07
168 169 4.126437 TCATAACGAAATCGGCATGTCAT 58.874 39.130 7.81 0.00 44.95 3.06
169 170 3.526534 TCATAACGAAATCGGCATGTCA 58.473 40.909 7.81 0.00 44.95 3.58
170 171 4.732285 ATCATAACGAAATCGGCATGTC 57.268 40.909 7.81 0.00 44.95 3.06
171 172 5.065859 TCAAATCATAACGAAATCGGCATGT 59.934 36.000 7.81 0.00 44.95 3.21
172 173 5.509771 TCAAATCATAACGAAATCGGCATG 58.490 37.500 7.81 9.56 44.95 4.06
173 174 5.749596 TCAAATCATAACGAAATCGGCAT 57.250 34.783 7.81 0.00 44.95 4.40
174 175 5.558083 CGATCAAATCATAACGAAATCGGCA 60.558 40.000 7.81 0.00 44.95 5.69
175 176 4.840772 CGATCAAATCATAACGAAATCGGC 59.159 41.667 7.81 0.00 44.95 5.54
176 177 4.840772 GCGATCAAATCATAACGAAATCGG 59.159 41.667 7.81 0.00 44.95 4.18
177 178 5.670097 AGCGATCAAATCATAACGAAATCG 58.330 37.500 0.48 0.48 46.33 3.34
178 179 5.780751 CGAGCGATCAAATCATAACGAAATC 59.219 40.000 0.00 0.00 0.00 2.17
179 180 5.670097 CGAGCGATCAAATCATAACGAAAT 58.330 37.500 0.00 0.00 0.00 2.17
180 181 4.550063 GCGAGCGATCAAATCATAACGAAA 60.550 41.667 0.00 0.00 0.00 3.46
181 182 3.060540 GCGAGCGATCAAATCATAACGAA 60.061 43.478 0.00 0.00 0.00 3.85
182 183 2.471370 GCGAGCGATCAAATCATAACGA 59.529 45.455 0.00 0.00 0.00 3.85
183 184 2.218530 TGCGAGCGATCAAATCATAACG 59.781 45.455 0.00 0.00 0.00 3.18
184 185 3.859745 TGCGAGCGATCAAATCATAAC 57.140 42.857 0.00 0.00 0.00 1.89
185 186 5.422666 AATTGCGAGCGATCAAATCATAA 57.577 34.783 0.00 0.00 0.00 1.90
186 187 6.362686 GTTAATTGCGAGCGATCAAATCATA 58.637 36.000 0.00 0.00 0.00 2.15
187 188 3.976793 AATTGCGAGCGATCAAATCAT 57.023 38.095 0.00 0.00 0.00 2.45
188 189 4.587306 GTTAATTGCGAGCGATCAAATCA 58.413 39.130 0.00 0.00 0.00 2.57
189 190 3.654912 CGTTAATTGCGAGCGATCAAATC 59.345 43.478 0.00 0.00 0.00 2.17
190 191 3.308595 TCGTTAATTGCGAGCGATCAAAT 59.691 39.130 0.00 0.00 34.11 2.32
191 192 2.668945 TCGTTAATTGCGAGCGATCAAA 59.331 40.909 0.00 0.00 34.11 2.69
192 193 2.263945 TCGTTAATTGCGAGCGATCAA 58.736 42.857 0.00 0.00 34.11 2.57
193 194 1.915952 TCGTTAATTGCGAGCGATCA 58.084 45.000 0.00 0.00 34.11 2.92
200 201 1.483004 TGATCCCCTCGTTAATTGCGA 59.517 47.619 6.74 6.74 36.85 5.10
201 202 1.948104 TGATCCCCTCGTTAATTGCG 58.052 50.000 0.00 0.00 0.00 4.85
202 203 3.013921 TGTTGATCCCCTCGTTAATTGC 58.986 45.455 0.00 0.00 0.00 3.56
203 204 4.006989 TGTGTTGATCCCCTCGTTAATTG 58.993 43.478 0.00 0.00 0.00 2.32
204 205 4.295141 TGTGTTGATCCCCTCGTTAATT 57.705 40.909 0.00 0.00 0.00 1.40
205 206 3.992943 TGTGTTGATCCCCTCGTTAAT 57.007 42.857 0.00 0.00 0.00 1.40
206 207 3.181453 TGTTGTGTTGATCCCCTCGTTAA 60.181 43.478 0.00 0.00 0.00 2.01
207 208 2.369203 TGTTGTGTTGATCCCCTCGTTA 59.631 45.455 0.00 0.00 0.00 3.18
208 209 1.142060 TGTTGTGTTGATCCCCTCGTT 59.858 47.619 0.00 0.00 0.00 3.85
209 210 0.762418 TGTTGTGTTGATCCCCTCGT 59.238 50.000 0.00 0.00 0.00 4.18
210 211 1.156736 GTGTTGTGTTGATCCCCTCG 58.843 55.000 0.00 0.00 0.00 4.63
211 212 1.156736 CGTGTTGTGTTGATCCCCTC 58.843 55.000 0.00 0.00 0.00 4.30
212 213 0.889186 GCGTGTTGTGTTGATCCCCT 60.889 55.000 0.00 0.00 0.00 4.79
213 214 1.579429 GCGTGTTGTGTTGATCCCC 59.421 57.895 0.00 0.00 0.00 4.81
214 215 1.206578 CGCGTGTTGTGTTGATCCC 59.793 57.895 0.00 0.00 0.00 3.85
215 216 0.110823 GACGCGTGTTGTGTTGATCC 60.111 55.000 20.70 0.00 42.62 3.36
216 217 0.448861 CGACGCGTGTTGTGTTGATC 60.449 55.000 20.70 0.00 43.93 2.92
217 218 1.149361 ACGACGCGTGTTGTGTTGAT 61.149 50.000 20.70 0.00 43.93 2.57
218 219 1.352882 AACGACGCGTGTTGTGTTGA 61.353 50.000 20.70 0.00 43.93 3.18
219 220 0.519586 AAACGACGCGTGTTGTGTTG 60.520 50.000 20.70 0.00 42.03 3.33
220 221 0.247379 GAAACGACGCGTGTTGTGTT 60.247 50.000 20.70 16.94 42.03 3.32
221 222 1.079875 AGAAACGACGCGTGTTGTGT 61.080 50.000 20.70 17.33 42.03 3.72
222 223 0.025770 AAGAAACGACGCGTGTTGTG 59.974 50.000 20.70 8.90 42.03 3.33
223 224 0.722848 AAAGAAACGACGCGTGTTGT 59.277 45.000 20.70 16.30 44.86 3.32
224 225 1.372656 GAAAGAAACGACGCGTGTTG 58.627 50.000 20.70 14.85 39.99 3.33
225 226 0.302589 GGAAAGAAACGACGCGTGTT 59.697 50.000 20.70 18.54 39.99 3.32
226 227 0.806884 TGGAAAGAAACGACGCGTGT 60.807 50.000 20.70 12.94 39.99 4.49
227 228 0.382636 GTGGAAAGAAACGACGCGTG 60.383 55.000 20.70 12.18 39.99 5.34
228 229 1.493134 GGTGGAAAGAAACGACGCGT 61.493 55.000 13.85 13.85 43.97 6.01
229 230 1.203313 GGTGGAAAGAAACGACGCG 59.797 57.895 3.53 3.53 0.00 6.01
230 231 0.234884 CAGGTGGAAAGAAACGACGC 59.765 55.000 0.00 0.00 0.00 5.19
231 232 1.260561 CACAGGTGGAAAGAAACGACG 59.739 52.381 0.00 0.00 0.00 5.12
244 245 2.751436 CCCGAATGGCCACAGGTG 60.751 66.667 8.16 2.38 0.00 4.00
262 263 3.071459 GATCACTGCGTGAACGGCG 62.071 63.158 4.80 4.80 45.96 6.46
263 264 1.565156 TTGATCACTGCGTGAACGGC 61.565 55.000 13.81 6.44 45.96 5.68
264 265 0.163788 GTTGATCACTGCGTGAACGG 59.836 55.000 13.81 0.00 45.96 4.44
265 266 0.858583 TGTTGATCACTGCGTGAACG 59.141 50.000 13.81 0.00 45.96 3.95
266 267 1.597195 TGTGTTGATCACTGCGTGAAC 59.403 47.619 13.81 12.01 45.96 3.18
267 268 1.946745 TGTGTTGATCACTGCGTGAA 58.053 45.000 13.81 0.00 45.96 3.18
268 269 1.597195 GTTGTGTTGATCACTGCGTGA 59.403 47.619 12.53 12.53 46.90 4.35
269 270 1.330213 TGTTGTGTTGATCACTGCGTG 59.670 47.619 0.00 2.79 46.27 5.34
270 271 1.662517 TGTTGTGTTGATCACTGCGT 58.337 45.000 0.00 0.00 46.27 5.24
271 272 2.577450 CATGTTGTGTTGATCACTGCG 58.423 47.619 0.00 0.00 46.27 5.18
272 273 2.322161 GCATGTTGTGTTGATCACTGC 58.678 47.619 0.00 0.00 46.27 4.40
273 274 2.666344 CGGCATGTTGTGTTGATCACTG 60.666 50.000 0.00 0.00 46.27 3.66
274 275 1.536766 CGGCATGTTGTGTTGATCACT 59.463 47.619 0.00 0.00 46.27 3.41
275 276 1.535028 TCGGCATGTTGTGTTGATCAC 59.465 47.619 0.00 0.00 46.31 3.06
276 277 1.889545 TCGGCATGTTGTGTTGATCA 58.110 45.000 0.00 0.00 0.00 2.92
277 278 3.492421 AATCGGCATGTTGTGTTGATC 57.508 42.857 0.00 0.00 0.00 2.92
278 279 3.670359 CGAAATCGGCATGTTGTGTTGAT 60.670 43.478 0.00 0.00 35.37 2.57
279 280 2.350293 CGAAATCGGCATGTTGTGTTGA 60.350 45.455 0.00 0.00 35.37 3.18
280 281 1.978097 CGAAATCGGCATGTTGTGTTG 59.022 47.619 0.00 0.00 35.37 3.33
281 282 1.606668 ACGAAATCGGCATGTTGTGTT 59.393 42.857 7.81 0.00 44.95 3.32
282 283 1.234821 ACGAAATCGGCATGTTGTGT 58.765 45.000 7.81 0.00 44.95 3.72
283 284 2.330231 AACGAAATCGGCATGTTGTG 57.670 45.000 7.81 0.00 44.95 3.33
284 285 3.730662 GCATAACGAAATCGGCATGTTGT 60.731 43.478 7.81 0.00 44.95 3.32
285 286 2.783284 GCATAACGAAATCGGCATGTTG 59.217 45.455 7.81 0.00 44.95 3.33
286 287 2.421775 TGCATAACGAAATCGGCATGTT 59.578 40.909 7.81 0.00 44.95 2.71
287 288 2.013400 TGCATAACGAAATCGGCATGT 58.987 42.857 7.81 0.00 44.95 3.21
288 289 2.375110 GTGCATAACGAAATCGGCATG 58.625 47.619 7.81 10.34 44.95 4.06
289 290 1.333619 GGTGCATAACGAAATCGGCAT 59.666 47.619 7.81 0.00 44.95 4.40
290 291 0.730265 GGTGCATAACGAAATCGGCA 59.270 50.000 7.81 4.23 44.95 5.69
291 292 1.014352 AGGTGCATAACGAAATCGGC 58.986 50.000 7.81 1.58 44.95 5.54
292 293 2.030457 GTCAGGTGCATAACGAAATCGG 59.970 50.000 7.81 0.00 44.95 4.18
293 294 2.930040 AGTCAGGTGCATAACGAAATCG 59.070 45.455 0.48 0.48 46.33 3.34
294 295 3.932710 TCAGTCAGGTGCATAACGAAATC 59.067 43.478 0.00 0.00 0.00 2.17
295 296 3.684788 GTCAGTCAGGTGCATAACGAAAT 59.315 43.478 0.00 0.00 0.00 2.17
296 297 3.064207 GTCAGTCAGGTGCATAACGAAA 58.936 45.455 0.00 0.00 0.00 3.46
297 298 2.299013 AGTCAGTCAGGTGCATAACGAA 59.701 45.455 0.00 0.00 0.00 3.85
298 299 1.893137 AGTCAGTCAGGTGCATAACGA 59.107 47.619 0.00 0.00 0.00 3.85
299 300 1.995484 CAGTCAGTCAGGTGCATAACG 59.005 52.381 0.00 0.00 0.00 3.18
300 301 2.996621 GTCAGTCAGTCAGGTGCATAAC 59.003 50.000 0.00 0.00 0.00 1.89
301 302 2.028112 GGTCAGTCAGTCAGGTGCATAA 60.028 50.000 0.00 0.00 0.00 1.90
302 303 1.550524 GGTCAGTCAGTCAGGTGCATA 59.449 52.381 0.00 0.00 0.00 3.14
303 304 0.322975 GGTCAGTCAGTCAGGTGCAT 59.677 55.000 0.00 0.00 0.00 3.96
304 305 1.748403 GGTCAGTCAGTCAGGTGCA 59.252 57.895 0.00 0.00 0.00 4.57
305 306 1.004440 GGGTCAGTCAGTCAGGTGC 60.004 63.158 0.00 0.00 0.00 5.01
306 307 0.034059 GTGGGTCAGTCAGTCAGGTG 59.966 60.000 0.00 0.00 0.00 4.00
307 308 1.122019 GGTGGGTCAGTCAGTCAGGT 61.122 60.000 0.00 0.00 0.00 4.00
308 309 1.121407 TGGTGGGTCAGTCAGTCAGG 61.121 60.000 0.00 0.00 0.00 3.86
309 310 0.758734 TTGGTGGGTCAGTCAGTCAG 59.241 55.000 0.00 0.00 0.00 3.51
310 311 1.208706 TTTGGTGGGTCAGTCAGTCA 58.791 50.000 0.00 0.00 0.00 3.41
311 312 2.427506 GATTTGGTGGGTCAGTCAGTC 58.572 52.381 0.00 0.00 0.00 3.51
312 313 1.073923 GGATTTGGTGGGTCAGTCAGT 59.926 52.381 0.00 0.00 0.00 3.41
313 314 1.614317 GGGATTTGGTGGGTCAGTCAG 60.614 57.143 0.00 0.00 0.00 3.51
314 315 0.404040 GGGATTTGGTGGGTCAGTCA 59.596 55.000 0.00 0.00 0.00 3.41
315 316 0.404040 TGGGATTTGGTGGGTCAGTC 59.596 55.000 0.00 0.00 0.00 3.51
316 317 0.112412 GTGGGATTTGGTGGGTCAGT 59.888 55.000 0.00 0.00 0.00 3.41
317 318 0.611896 GGTGGGATTTGGTGGGTCAG 60.612 60.000 0.00 0.00 0.00 3.51
335 336 0.603707 TTGTTTGCTCGCTCCAGAGG 60.604 55.000 0.00 0.00 38.63 3.69
337 338 0.392706 TCTTGTTTGCTCGCTCCAGA 59.607 50.000 0.00 0.00 0.00 3.86
339 340 1.221466 CGTCTTGTTTGCTCGCTCCA 61.221 55.000 0.00 0.00 0.00 3.86
345 346 2.127232 GCCGCGTCTTGTTTGCTC 60.127 61.111 4.92 0.00 0.00 4.26
347 348 2.127232 GAGCCGCGTCTTGTTTGC 60.127 61.111 4.92 0.00 0.00 3.68
350 351 2.430921 CGAGAGCCGCGTCTTGTT 60.431 61.111 4.92 0.00 0.00 2.83
435 446 3.318275 TCGTAAGTTTCTGCTGACTGACT 59.682 43.478 0.00 0.00 39.48 3.41
437 448 3.318275 ACTCGTAAGTTTCTGCTGACTGA 59.682 43.478 0.00 0.00 39.48 3.41
439 450 3.318275 TGACTCGTAAGTTTCTGCTGACT 59.682 43.478 0.00 0.00 35.28 3.41
440 451 3.639538 TGACTCGTAAGTTTCTGCTGAC 58.360 45.455 0.00 0.00 35.28 3.51
441 452 3.305403 CCTGACTCGTAAGTTTCTGCTGA 60.305 47.826 0.00 0.00 35.28 4.26
442 453 2.989840 CCTGACTCGTAAGTTTCTGCTG 59.010 50.000 0.00 0.00 35.28 4.41
443 454 2.891580 TCCTGACTCGTAAGTTTCTGCT 59.108 45.455 0.00 0.00 35.28 4.24
559 577 2.202932 ATCGCATCGGACCACTGC 60.203 61.111 5.39 5.39 0.00 4.40
560 578 0.460109 TTGATCGCATCGGACCACTG 60.460 55.000 0.00 0.00 0.00 3.66
561 579 0.465705 ATTGATCGCATCGGACCACT 59.534 50.000 0.00 0.00 0.00 4.00
562 580 1.261619 GAATTGATCGCATCGGACCAC 59.738 52.381 0.00 0.00 0.00 4.16
563 581 1.134551 TGAATTGATCGCATCGGACCA 60.135 47.619 0.00 0.00 0.00 4.02
564 582 1.581934 TGAATTGATCGCATCGGACC 58.418 50.000 0.00 0.00 0.00 4.46
565 583 3.354397 GTTTGAATTGATCGCATCGGAC 58.646 45.455 0.00 0.00 0.00 4.79
566 584 2.354510 GGTTTGAATTGATCGCATCGGA 59.645 45.455 0.00 0.00 0.00 4.55
567 585 2.541588 GGGTTTGAATTGATCGCATCGG 60.542 50.000 0.00 0.00 0.00 4.18
568 586 2.097304 TGGGTTTGAATTGATCGCATCG 59.903 45.455 0.00 0.00 0.00 3.84
572 590 1.469767 GGCTGGGTTTGAATTGATCGC 60.470 52.381 0.00 0.00 0.00 4.58
597 615 2.863484 TGGCCTGATTGGTGGGGT 60.863 61.111 3.32 0.00 38.35 4.95
727 749 6.779117 TCTTGTCGGATTAGTTTAGTCGTAG 58.221 40.000 0.00 0.00 0.00 3.51
780 802 7.002879 AGTGAGTTCTTGGAGTTGTACTAGTA 58.997 38.462 0.00 0.00 0.00 1.82
781 803 5.834204 AGTGAGTTCTTGGAGTTGTACTAGT 59.166 40.000 0.00 0.00 0.00 2.57
782 804 6.207810 AGAGTGAGTTCTTGGAGTTGTACTAG 59.792 42.308 0.00 0.00 0.00 2.57
785 807 5.203060 AGAGTGAGTTCTTGGAGTTGTAC 57.797 43.478 0.00 0.00 0.00 2.90
808 830 3.508402 GGTCATGGGTTAACAACGGAAAT 59.492 43.478 8.10 0.00 0.00 2.17
851 903 2.792878 AGTCGTAGGAGTACTTGCAGT 58.207 47.619 0.00 0.00 0.00 4.40
859 911 4.143030 GCGCGATTAATAGTCGTAGGAGTA 60.143 45.833 12.10 2.60 40.98 2.59
860 912 3.364764 GCGCGATTAATAGTCGTAGGAGT 60.365 47.826 12.10 0.00 40.98 3.85
861 913 3.162068 GCGCGATTAATAGTCGTAGGAG 58.838 50.000 12.10 0.00 40.98 3.69
862 914 2.095567 GGCGCGATTAATAGTCGTAGGA 60.096 50.000 12.10 0.00 40.98 2.94
863 915 2.248487 GGCGCGATTAATAGTCGTAGG 58.752 52.381 12.10 0.00 40.98 3.18
864 916 2.248487 GGGCGCGATTAATAGTCGTAG 58.752 52.381 12.10 3.40 40.98 3.51
1103 1160 8.915036 AGTCAAACAGTAGTAAAAGAAGAGAGA 58.085 33.333 0.00 0.00 0.00 3.10
1130 1187 8.975439 GCGCAACTTACTAATATACACTATTGT 58.025 33.333 0.30 0.00 40.02 2.71
1141 1198 3.732219 CCGAATCGCGCAACTTACTAATA 59.268 43.478 8.75 0.00 39.11 0.98
1142 1199 2.538449 CCGAATCGCGCAACTTACTAAT 59.462 45.455 8.75 0.00 39.11 1.73
1153 1212 1.297598 CATGGAAACCGAATCGCGC 60.298 57.895 0.00 0.00 39.11 6.86
1365 1440 2.505866 CAAATGCTTCGAAGGTAACGC 58.494 47.619 25.77 12.20 46.39 4.84
1579 1662 1.379176 CGTCCTCAGCTCCTCCTCA 60.379 63.158 0.00 0.00 0.00 3.86
1597 1680 2.436824 GCCTTGTCTTCCCGCTCC 60.437 66.667 0.00 0.00 0.00 4.70
1747 1839 1.744741 GGTCTGCTCCAGCTGCTTC 60.745 63.158 8.66 0.00 42.66 3.86
2200 2292 2.683933 TTCACCTCCTCCTCGGCC 60.684 66.667 0.00 0.00 0.00 6.13
2788 2880 4.070552 GCCGCGGACTTGAGGTCT 62.071 66.667 33.48 0.00 43.97 3.85
2991 3086 5.104318 TGCATTACATTACATGGGGTGACTA 60.104 40.000 0.00 0.00 33.60 2.59
2993 3088 3.951037 TGCATTACATTACATGGGGTGAC 59.049 43.478 0.00 0.00 33.60 3.67
2994 3089 4.242336 TGCATTACATTACATGGGGTGA 57.758 40.909 0.00 0.00 33.60 4.02
2995 3090 4.341806 ACATGCATTACATTACATGGGGTG 59.658 41.667 0.00 0.00 43.28 4.61
2996 3091 4.545678 ACATGCATTACATTACATGGGGT 58.454 39.130 0.00 0.00 43.28 4.95
3000 3095 9.786105 TCAAAACTACATGCATTACATTACATG 57.214 29.630 0.00 0.00 44.29 3.21
3081 3183 5.220643 CCAAATTTCAGCGCAAAAAGAAAGT 60.221 36.000 11.47 8.18 33.96 2.66
3083 3185 4.872691 TCCAAATTTCAGCGCAAAAAGAAA 59.127 33.333 11.47 11.87 34.83 2.52
3135 3237 2.563179 TCAGCCTAGAAAGTGTCAGTCC 59.437 50.000 0.00 0.00 0.00 3.85
3148 3250 6.036953 GTCAATCTGTTCATCTTTCAGCCTAG 59.963 42.308 0.00 0.00 0.00 3.02
3200 3303 5.876460 CCCCTTCAAATGCCATCTTTTTAAG 59.124 40.000 0.00 0.00 0.00 1.85
3203 3306 3.909364 TCCCCTTCAAATGCCATCTTTTT 59.091 39.130 0.00 0.00 0.00 1.94
3249 3352 1.001641 GACTTGTCAGGGGCTGCAT 60.002 57.895 0.50 0.00 0.00 3.96
3268 3371 3.833545 AAAAACACACACACACGCTAA 57.166 38.095 0.00 0.00 0.00 3.09
3305 3410 2.185004 TGCCTTGGTGCTTCTAGAAC 57.815 50.000 0.00 0.00 0.00 3.01
3318 3423 2.253392 GCGAGATTTGACTTGCCTTG 57.747 50.000 0.00 0.00 40.32 3.61
3354 3459 2.543445 CGAAATTTGACTTGCCTGCACA 60.543 45.455 0.00 0.00 0.00 4.57
3358 3463 1.000385 TGGCGAAATTTGACTTGCCTG 60.000 47.619 0.00 0.00 42.87 4.85
3390 3495 3.750371 TGTTAACAGCACCTGCACTAAT 58.250 40.909 3.59 0.00 45.16 1.73
3392 3497 2.766313 CTGTTAACAGCACCTGCACTA 58.234 47.619 22.03 0.00 45.16 2.74
3415 3520 3.040147 ACGACCAACATCAAGTACTGG 57.960 47.619 0.00 0.00 34.81 4.00
3431 3538 3.433615 CCATTCTTCTTCTCACCAACGAC 59.566 47.826 0.00 0.00 0.00 4.34
3440 3547 2.158900 TCCGATGGCCATTCTTCTTCTC 60.159 50.000 21.84 3.07 0.00 2.87
3457 3564 1.924731 AGGCTCCGATCATATTCCGA 58.075 50.000 0.00 0.00 0.00 4.55
3510 3636 4.869861 ACATGCAAACAGAAGGAAAACAAC 59.130 37.500 0.00 0.00 0.00 3.32
3513 3639 6.701400 ACATTACATGCAAACAGAAGGAAAAC 59.299 34.615 0.00 0.00 0.00 2.43
3523 3650 7.493645 TCATTTTGTTGACATTACATGCAAACA 59.506 29.630 0.00 0.00 37.21 2.83
3575 3801 9.270640 ACTAGTAAGAGTACTGAATACGTATGG 57.729 37.037 9.24 5.47 40.89 2.74
3597 3826 5.240623 AGCGATAATTCAGAGTCTGGACTAG 59.759 44.000 19.99 7.30 42.66 2.57
3616 3845 3.997021 ACAACGAAGATGAAAGAAGCGAT 59.003 39.130 0.00 0.00 33.32 4.58
3637 3867 5.923733 TCCAGGATAAAGTCAGAGAGAAC 57.076 43.478 0.00 0.00 0.00 3.01
3677 3907 3.071479 GCTTGGTCTGAAATGGTACGAA 58.929 45.455 0.00 0.00 0.00 3.85
3707 3937 3.490761 CCACTTTGCACGTCCAGATTTTT 60.491 43.478 0.00 0.00 0.00 1.94
3713 3943 1.518056 ATGCCACTTTGCACGTCCAG 61.518 55.000 0.00 0.00 45.48 3.86
3743 3973 0.108804 TAAAAGGTCGAGCTGGCGAG 60.109 55.000 19.39 0.00 41.49 5.03
3744 3974 0.319083 TTAAAAGGTCGAGCTGGCGA 59.681 50.000 19.39 2.38 38.07 5.54
3745 3975 1.369625 ATTAAAAGGTCGAGCTGGCG 58.630 50.000 19.39 0.00 0.00 5.69
3746 3976 2.747446 TGAATTAAAAGGTCGAGCTGGC 59.253 45.455 19.39 3.59 0.00 4.85
3747 3977 4.635765 TGATGAATTAAAAGGTCGAGCTGG 59.364 41.667 19.39 0.00 0.00 4.85
3748 3978 5.122239 TGTGATGAATTAAAAGGTCGAGCTG 59.878 40.000 19.39 0.00 0.00 4.24
3749 3979 5.245531 TGTGATGAATTAAAAGGTCGAGCT 58.754 37.500 12.24 12.24 0.00 4.09
3750 3980 5.545658 TGTGATGAATTAAAAGGTCGAGC 57.454 39.130 6.48 6.48 0.00 5.03
3751 3981 7.133891 ACTTGTGATGAATTAAAAGGTCGAG 57.866 36.000 0.00 0.00 0.00 4.04
3752 3982 7.504924 AACTTGTGATGAATTAAAAGGTCGA 57.495 32.000 0.00 0.00 0.00 4.20
3753 3983 9.490663 GATAACTTGTGATGAATTAAAAGGTCG 57.509 33.333 0.00 0.00 0.00 4.79
3754 3984 9.788960 GGATAACTTGTGATGAATTAAAAGGTC 57.211 33.333 0.00 0.00 0.00 3.85
3755 3985 8.749354 GGGATAACTTGTGATGAATTAAAAGGT 58.251 33.333 0.00 0.00 0.00 3.50
3756 3986 8.748412 TGGGATAACTTGTGATGAATTAAAAGG 58.252 33.333 0.00 0.00 0.00 3.11
3762 3992 9.872684 AGATAATGGGATAACTTGTGATGAATT 57.127 29.630 0.00 0.00 0.00 2.17
3763 3993 9.872684 AAGATAATGGGATAACTTGTGATGAAT 57.127 29.630 0.00 0.00 0.00 2.57
3764 3994 9.342308 GAAGATAATGGGATAACTTGTGATGAA 57.658 33.333 0.00 0.00 0.00 2.57
3765 3995 8.717717 AGAAGATAATGGGATAACTTGTGATGA 58.282 33.333 0.00 0.00 0.00 2.92
3766 3996 8.781196 CAGAAGATAATGGGATAACTTGTGATG 58.219 37.037 0.00 0.00 33.51 3.07
3767 3997 8.497745 ACAGAAGATAATGGGATAACTTGTGAT 58.502 33.333 0.00 0.00 34.58 3.06
3768 3998 7.861629 ACAGAAGATAATGGGATAACTTGTGA 58.138 34.615 0.00 0.00 34.58 3.58
3769 3999 7.770433 TGACAGAAGATAATGGGATAACTTGTG 59.230 37.037 0.00 0.00 36.02 3.33
3770 4000 7.861629 TGACAGAAGATAATGGGATAACTTGT 58.138 34.615 0.00 0.00 0.00 3.16
3771 4001 8.206867 TCTGACAGAAGATAATGGGATAACTTG 58.793 37.037 1.64 0.00 0.00 3.16
3772 4002 8.207545 GTCTGACAGAAGATAATGGGATAACTT 58.792 37.037 6.76 0.00 0.00 2.66
3773 4003 7.345653 TGTCTGACAGAAGATAATGGGATAACT 59.654 37.037 6.76 0.00 0.00 2.24
3774 4004 7.500992 TGTCTGACAGAAGATAATGGGATAAC 58.499 38.462 6.76 0.00 0.00 1.89
3775 4005 7.675161 TGTCTGACAGAAGATAATGGGATAA 57.325 36.000 6.76 0.00 0.00 1.75
3776 4006 7.675161 TTGTCTGACAGAAGATAATGGGATA 57.325 36.000 6.76 0.00 0.00 2.59
3777 4007 6.566079 TTGTCTGACAGAAGATAATGGGAT 57.434 37.500 6.76 0.00 0.00 3.85
3778 4008 6.373005 TTTGTCTGACAGAAGATAATGGGA 57.627 37.500 6.76 0.00 28.87 4.37
3779 4009 7.452880 TTTTTGTCTGACAGAAGATAATGGG 57.547 36.000 6.76 0.00 28.87 4.00
3804 4034 7.390162 CACCCTATATGTTTGCAACCAATTTTT 59.610 33.333 0.00 0.00 0.00 1.94
3805 4035 6.878389 CACCCTATATGTTTGCAACCAATTTT 59.122 34.615 0.00 0.00 0.00 1.82
3806 4036 6.013812 ACACCCTATATGTTTGCAACCAATTT 60.014 34.615 0.00 0.00 0.00 1.82
3807 4037 5.483583 ACACCCTATATGTTTGCAACCAATT 59.516 36.000 0.00 0.00 0.00 2.32
3808 4038 5.022787 ACACCCTATATGTTTGCAACCAAT 58.977 37.500 0.00 0.00 0.00 3.16
3809 4039 4.219507 CACACCCTATATGTTTGCAACCAA 59.780 41.667 0.00 0.00 0.00 3.67
3810 4040 3.761218 CACACCCTATATGTTTGCAACCA 59.239 43.478 0.00 0.00 0.00 3.67
3811 4041 3.761752 ACACACCCTATATGTTTGCAACC 59.238 43.478 0.00 0.00 0.00 3.77
3812 4042 5.048364 TGAACACACCCTATATGTTTGCAAC 60.048 40.000 0.00 0.00 36.70 4.17
3813 4043 5.073428 TGAACACACCCTATATGTTTGCAA 58.927 37.500 0.00 0.00 36.70 4.08
3814 4044 4.657013 TGAACACACCCTATATGTTTGCA 58.343 39.130 0.00 0.00 36.70 4.08
3815 4045 4.700213 ACTGAACACACCCTATATGTTTGC 59.300 41.667 0.00 0.00 36.70 3.68
3816 4046 6.429692 TCAACTGAACACACCCTATATGTTTG 59.570 38.462 0.00 0.00 36.70 2.93
3817 4047 6.539173 TCAACTGAACACACCCTATATGTTT 58.461 36.000 0.00 0.00 36.70 2.83
3818 4048 6.121776 TCAACTGAACACACCCTATATGTT 57.878 37.500 0.00 0.00 39.23 2.71
3819 4049 5.755409 TCAACTGAACACACCCTATATGT 57.245 39.130 0.00 0.00 0.00 2.29
3820 4050 5.586243 CCTTCAACTGAACACACCCTATATG 59.414 44.000 0.00 0.00 0.00 1.78
3821 4051 5.339200 CCCTTCAACTGAACACACCCTATAT 60.339 44.000 0.00 0.00 0.00 0.86
3822 4052 4.019681 CCCTTCAACTGAACACACCCTATA 60.020 45.833 0.00 0.00 0.00 1.31
3823 4053 3.244911 CCCTTCAACTGAACACACCCTAT 60.245 47.826 0.00 0.00 0.00 2.57
3824 4054 2.105821 CCCTTCAACTGAACACACCCTA 59.894 50.000 0.00 0.00 0.00 3.53
3825 4055 1.133792 CCCTTCAACTGAACACACCCT 60.134 52.381 0.00 0.00 0.00 4.34
3826 4056 1.133915 TCCCTTCAACTGAACACACCC 60.134 52.381 0.00 0.00 0.00 4.61
3827 4057 1.947456 GTCCCTTCAACTGAACACACC 59.053 52.381 0.00 0.00 0.00 4.16
3828 4058 1.597663 CGTCCCTTCAACTGAACACAC 59.402 52.381 0.00 0.00 0.00 3.82
3829 4059 1.474320 CCGTCCCTTCAACTGAACACA 60.474 52.381 0.00 0.00 0.00 3.72
3830 4060 1.226746 CCGTCCCTTCAACTGAACAC 58.773 55.000 0.00 0.00 0.00 3.32
3831 4061 0.534203 GCCGTCCCTTCAACTGAACA 60.534 55.000 0.00 0.00 0.00 3.18
3832 4062 1.235281 GGCCGTCCCTTCAACTGAAC 61.235 60.000 0.00 0.00 0.00 3.18
3833 4063 1.072505 GGCCGTCCCTTCAACTGAA 59.927 57.895 0.00 0.00 0.00 3.02
3834 4064 1.841556 AGGCCGTCCCTTCAACTGA 60.842 57.895 0.00 0.00 43.06 3.41
3835 4065 1.672356 CAGGCCGTCCCTTCAACTG 60.672 63.158 0.00 0.00 43.06 3.16
3836 4066 2.750350 CAGGCCGTCCCTTCAACT 59.250 61.111 0.00 0.00 43.06 3.16
3837 4067 2.359975 CCAGGCCGTCCCTTCAAC 60.360 66.667 0.00 0.00 43.06 3.18
3838 4068 1.497309 ATTCCAGGCCGTCCCTTCAA 61.497 55.000 0.00 0.00 43.06 2.69
3839 4069 1.923395 ATTCCAGGCCGTCCCTTCA 60.923 57.895 0.00 0.00 43.06 3.02
3840 4070 1.452108 CATTCCAGGCCGTCCCTTC 60.452 63.158 0.00 0.00 43.06 3.46
3841 4071 2.677228 CATTCCAGGCCGTCCCTT 59.323 61.111 0.00 0.00 43.06 3.95
3850 4080 2.438434 GACCCGTGCCATTCCAGG 60.438 66.667 0.00 0.00 0.00 4.45
3851 4081 2.438434 GGACCCGTGCCATTCCAG 60.438 66.667 0.00 0.00 0.00 3.86
3852 4082 4.402528 CGGACCCGTGCCATTCCA 62.403 66.667 0.00 0.00 34.35 3.53
3853 4083 4.090588 TCGGACCCGTGCCATTCC 62.091 66.667 8.42 0.00 40.74 3.01
3854 4084 2.818274 GTCGGACCCGTGCCATTC 60.818 66.667 8.42 0.00 40.74 2.67
3855 4085 4.404098 GGTCGGACCCGTGCCATT 62.404 66.667 16.55 0.00 40.74 3.16
3875 4105 3.162154 GAGAACGGGGGCTAGGGG 61.162 72.222 0.00 0.00 0.00 4.79
3876 4106 3.537874 CGAGAACGGGGGCTAGGG 61.538 72.222 0.00 0.00 35.72 3.53
3877 4107 4.222847 GCGAGAACGGGGGCTAGG 62.223 72.222 0.00 0.00 40.15 3.02
3878 4108 4.570663 CGCGAGAACGGGGGCTAG 62.571 72.222 0.00 0.00 46.13 3.42
3885 4115 1.411394 TTAACTGAACGCGAGAACGG 58.589 50.000 15.93 8.44 40.15 4.44
3886 4116 3.492725 TTTTAACTGAACGCGAGAACG 57.507 42.857 15.93 0.00 42.93 3.95
3887 4117 4.611366 CCAATTTTAACTGAACGCGAGAAC 59.389 41.667 15.93 0.98 0.00 3.01
3888 4118 4.319911 CCCAATTTTAACTGAACGCGAGAA 60.320 41.667 15.93 0.00 0.00 2.87
3889 4119 3.187637 CCCAATTTTAACTGAACGCGAGA 59.812 43.478 15.93 0.00 0.00 4.04
3890 4120 3.187637 TCCCAATTTTAACTGAACGCGAG 59.812 43.478 15.93 1.31 0.00 5.03
3891 4121 3.058777 GTCCCAATTTTAACTGAACGCGA 60.059 43.478 15.93 0.00 0.00 5.87
3892 4122 3.231160 GTCCCAATTTTAACTGAACGCG 58.769 45.455 3.53 3.53 0.00 6.01
3893 4123 3.231160 CGTCCCAATTTTAACTGAACGC 58.769 45.455 0.00 0.00 0.00 4.84
3894 4124 3.365565 CCCGTCCCAATTTTAACTGAACG 60.366 47.826 0.00 0.00 0.00 3.95
3895 4125 3.613193 GCCCGTCCCAATTTTAACTGAAC 60.613 47.826 0.00 0.00 0.00 3.18
3896 4126 2.559231 GCCCGTCCCAATTTTAACTGAA 59.441 45.455 0.00 0.00 0.00 3.02
3897 4127 2.164338 GCCCGTCCCAATTTTAACTGA 58.836 47.619 0.00 0.00 0.00 3.41
3898 4128 1.889829 TGCCCGTCCCAATTTTAACTG 59.110 47.619 0.00 0.00 0.00 3.16
3899 4129 1.890489 GTGCCCGTCCCAATTTTAACT 59.110 47.619 0.00 0.00 0.00 2.24
3900 4130 1.401800 CGTGCCCGTCCCAATTTTAAC 60.402 52.381 0.00 0.00 0.00 2.01
3901 4131 0.882474 CGTGCCCGTCCCAATTTTAA 59.118 50.000 0.00 0.00 0.00 1.52
3902 4132 1.587933 GCGTGCCCGTCCCAATTTTA 61.588 55.000 0.00 0.00 36.15 1.52
3903 4133 2.926420 GCGTGCCCGTCCCAATTTT 61.926 57.895 0.00 0.00 36.15 1.82
3904 4134 3.370231 GCGTGCCCGTCCCAATTT 61.370 61.111 0.00 0.00 36.15 1.82
3905 4135 4.652131 TGCGTGCCCGTCCCAATT 62.652 61.111 0.00 0.00 36.15 2.32
3926 4156 2.405172 GAATATTCGCTCGAGGGGAAC 58.595 52.381 27.01 10.03 46.89 3.62
3928 4158 0.966920 GGAATATTCGCTCGAGGGGA 59.033 55.000 27.01 21.01 35.02 4.81
3929 4159 0.388649 CGGAATATTCGCTCGAGGGG 60.389 60.000 27.01 10.58 0.00 4.79
3930 4160 3.108521 CGGAATATTCGCTCGAGGG 57.891 57.895 22.60 22.60 0.00 4.30
3938 4168 0.798776 GCATCTGGGCGGAATATTCG 59.201 55.000 9.32 6.21 0.00 3.34
3948 4178 2.435938 TTCGTTCCGCATCTGGGC 60.436 61.111 0.00 0.00 0.00 5.36
3949 4179 1.079127 ACTTCGTTCCGCATCTGGG 60.079 57.895 0.00 0.00 0.00 4.45
3950 4180 0.389817 TGACTTCGTTCCGCATCTGG 60.390 55.000 0.00 0.00 0.00 3.86
3951 4181 1.645034 ATGACTTCGTTCCGCATCTG 58.355 50.000 0.00 0.00 0.00 2.90
3952 4182 2.481449 GGTATGACTTCGTTCCGCATCT 60.481 50.000 0.00 0.00 0.00 2.90
3953 4183 1.859080 GGTATGACTTCGTTCCGCATC 59.141 52.381 0.00 0.00 0.00 3.91
3954 4184 1.480954 AGGTATGACTTCGTTCCGCAT 59.519 47.619 0.00 0.00 0.00 4.73
3955 4185 0.892755 AGGTATGACTTCGTTCCGCA 59.107 50.000 0.00 0.00 0.00 5.69
3956 4186 1.557651 GAGGTATGACTTCGTTCCGC 58.442 55.000 0.00 0.00 0.00 5.54
3957 4187 1.399440 TCGAGGTATGACTTCGTTCCG 59.601 52.381 10.37 0.00 46.05 4.30
3958 4188 3.498927 TTCGAGGTATGACTTCGTTCC 57.501 47.619 10.37 0.00 46.05 3.62
3959 4189 4.201466 CGTTTTCGAGGTATGACTTCGTTC 60.201 45.833 10.37 1.28 46.05 3.95
3960 4190 3.671928 CGTTTTCGAGGTATGACTTCGTT 59.328 43.478 10.37 0.00 46.05 3.85
3961 4191 3.240069 CGTTTTCGAGGTATGACTTCGT 58.760 45.455 10.37 0.00 46.05 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.