Multiple sequence alignment - TraesCS2B01G337200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G337200 chr2B 100.000 2797 0 0 1 2797 481627558 481630354 0.000000e+00 5166.0
1 TraesCS2B01G337200 chr2B 90.407 688 47 9 1540 2222 702206436 702207109 0.000000e+00 887.0
2 TraesCS2B01G337200 chr2B 93.929 560 34 0 1663 2222 128053630 128053071 0.000000e+00 846.0
3 TraesCS2B01G337200 chr2B 100.000 49 0 0 2560 2608 481630079 481630127 1.070000e-14 91.6
4 TraesCS2B01G337200 chr2B 100.000 49 0 0 2522 2570 481630117 481630165 1.070000e-14 91.6
5 TraesCS2B01G337200 chr7A 95.577 1266 45 6 447 1706 21043697 21042437 0.000000e+00 2017.0
6 TraesCS2B01G337200 chr3A 95.498 1266 45 6 447 1706 611009857 611011116 0.000000e+00 2012.0
7 TraesCS2B01G337200 chr3A 94.708 1266 54 6 447 1706 714222879 714224137 0.000000e+00 1954.0
8 TraesCS2B01G337200 chr3A 95.238 42 2 0 389 430 714222836 714222877 1.800000e-07 67.6
9 TraesCS2B01G337200 chr5A 94.411 1324 45 8 389 1706 663200471 663201771 0.000000e+00 2008.0
10 TraesCS2B01G337200 chr5A 93.882 1324 54 8 389 1706 100350019 100348717 0.000000e+00 1971.0
11 TraesCS2B01G337200 chr5A 94.435 1222 38 11 389 1604 4425133 4426330 0.000000e+00 1853.0
12 TraesCS2B01G337200 chr5A 92.718 1236 41 16 389 1604 542385048 542386254 0.000000e+00 1738.0
13 TraesCS2B01G337200 chr1A 95.261 1266 47 9 447 1706 577613111 577611853 0.000000e+00 1993.0
14 TraesCS2B01G337200 chr3B 94.180 1323 50 8 389 1705 778356049 778354748 0.000000e+00 1991.0
15 TraesCS2B01G337200 chr3B 93.274 669 42 1 1557 2222 738051719 738051051 0.000000e+00 983.0
16 TraesCS2B01G337200 chr6A 95.103 1266 48 7 447 1706 562225867 562224610 0.000000e+00 1982.0
17 TraesCS2B01G337200 chr2D 92.451 1391 76 16 720 2096 406140433 406141808 0.000000e+00 1960.0
18 TraesCS2B01G337200 chr2D 84.097 698 75 22 1 682 406139759 406140436 2.350000e-180 641.0
19 TraesCS2B01G337200 chr2D 92.169 166 7 3 2557 2717 406145876 406146040 2.170000e-56 230.0
20 TraesCS2B01G337200 chr2D 91.045 134 10 1 2439 2570 406145795 406145928 2.210000e-41 180.0
21 TraesCS2B01G337200 chr2D 90.179 112 11 0 2090 2201 406141868 406141979 2.250000e-31 147.0
22 TraesCS2B01G337200 chr4A 94.108 1222 46 7 389 1604 644677402 644678603 0.000000e+00 1834.0
23 TraesCS2B01G337200 chr4A 94.108 1222 46 7 389 1604 644725855 644727056 0.000000e+00 1834.0
24 TraesCS2B01G337200 chr2A 92.559 766 42 6 1 763 544285427 544286180 0.000000e+00 1085.0
25 TraesCS2B01G337200 chr2A 86.842 228 18 10 2571 2789 544289560 544289784 7.740000e-61 244.0
26 TraesCS2B01G337200 chr2A 84.793 217 11 12 2354 2570 544289402 544289596 6.110000e-47 198.0
27 TraesCS2B01G337200 chr1B 92.722 687 45 2 1539 2222 152576520 152575836 0.000000e+00 987.0
28 TraesCS2B01G337200 chr1B 93.944 611 34 3 1614 2222 569796591 569795982 0.000000e+00 920.0
29 TraesCS2B01G337200 chr1B 90.525 686 47 3 1540 2222 639385101 639384431 0.000000e+00 891.0
30 TraesCS2B01G337200 chr7B 92.566 686 46 2 1540 2222 63964207 63963524 0.000000e+00 979.0
31 TraesCS2B01G337200 chr4B 95.402 174 8 0 1684 1857 657567039 657567212 7.630000e-71 278.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G337200 chr2B 481627558 481630354 2796 False 1783.066667 5166 100.000000 1 2797 3 chr2B.!!$F2 2796
1 TraesCS2B01G337200 chr2B 702206436 702207109 673 False 887.000000 887 90.407000 1540 2222 1 chr2B.!!$F1 682
2 TraesCS2B01G337200 chr2B 128053071 128053630 559 True 846.000000 846 93.929000 1663 2222 1 chr2B.!!$R1 559
3 TraesCS2B01G337200 chr7A 21042437 21043697 1260 True 2017.000000 2017 95.577000 447 1706 1 chr7A.!!$R1 1259
4 TraesCS2B01G337200 chr3A 611009857 611011116 1259 False 2012.000000 2012 95.498000 447 1706 1 chr3A.!!$F1 1259
5 TraesCS2B01G337200 chr3A 714222836 714224137 1301 False 1010.800000 1954 94.973000 389 1706 2 chr3A.!!$F2 1317
6 TraesCS2B01G337200 chr5A 663200471 663201771 1300 False 2008.000000 2008 94.411000 389 1706 1 chr5A.!!$F3 1317
7 TraesCS2B01G337200 chr5A 100348717 100350019 1302 True 1971.000000 1971 93.882000 389 1706 1 chr5A.!!$R1 1317
8 TraesCS2B01G337200 chr5A 4425133 4426330 1197 False 1853.000000 1853 94.435000 389 1604 1 chr5A.!!$F1 1215
9 TraesCS2B01G337200 chr5A 542385048 542386254 1206 False 1738.000000 1738 92.718000 389 1604 1 chr5A.!!$F2 1215
10 TraesCS2B01G337200 chr1A 577611853 577613111 1258 True 1993.000000 1993 95.261000 447 1706 1 chr1A.!!$R1 1259
11 TraesCS2B01G337200 chr3B 778354748 778356049 1301 True 1991.000000 1991 94.180000 389 1705 1 chr3B.!!$R2 1316
12 TraesCS2B01G337200 chr3B 738051051 738051719 668 True 983.000000 983 93.274000 1557 2222 1 chr3B.!!$R1 665
13 TraesCS2B01G337200 chr6A 562224610 562225867 1257 True 1982.000000 1982 95.103000 447 1706 1 chr6A.!!$R1 1259
14 TraesCS2B01G337200 chr2D 406139759 406146040 6281 False 631.600000 1960 89.988200 1 2717 5 chr2D.!!$F1 2716
15 TraesCS2B01G337200 chr4A 644677402 644678603 1201 False 1834.000000 1834 94.108000 389 1604 1 chr4A.!!$F1 1215
16 TraesCS2B01G337200 chr4A 644725855 644727056 1201 False 1834.000000 1834 94.108000 389 1604 1 chr4A.!!$F2 1215
17 TraesCS2B01G337200 chr2A 544285427 544289784 4357 False 509.000000 1085 88.064667 1 2789 3 chr2A.!!$F1 2788
18 TraesCS2B01G337200 chr1B 152575836 152576520 684 True 987.000000 987 92.722000 1539 2222 1 chr1B.!!$R1 683
19 TraesCS2B01G337200 chr1B 569795982 569796591 609 True 920.000000 920 93.944000 1614 2222 1 chr1B.!!$R2 608
20 TraesCS2B01G337200 chr1B 639384431 639385101 670 True 891.000000 891 90.525000 1540 2222 1 chr1B.!!$R3 682
21 TraesCS2B01G337200 chr7B 63963524 63964207 683 True 979.000000 979 92.566000 1540 2222 1 chr7B.!!$R1 682

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
329 339 1.211703 TGGGTGCATTGATACACGGAT 59.788 47.619 0.0 0.0 37.68 4.18 F
1285 1338 1.258445 CCCGTAAGTCTGCTCCCACT 61.258 60.000 0.0 0.0 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1604 1668 0.032130 GCACAGACAGAACGAGACCA 59.968 55.0 0.0 0.0 0.0 4.02 R
2595 7293 0.106015 GGGAACAATGGGGATGGGAG 60.106 60.0 0.0 0.0 0.0 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.583404 CGCTTTGAATTATTGGCGTGC 59.417 47.619 0.00 0.00 38.20 5.34
77 78 3.904800 TTGGAGAATTCGGTATCTGCA 57.095 42.857 0.00 3.21 41.46 4.41
90 91 3.689649 GGTATCTGCAGGTTGGTAGTTTG 59.310 47.826 15.13 0.00 0.00 2.93
131 132 3.428589 GGAAAGAATTGGCATGAGCTCAC 60.429 47.826 20.97 7.23 41.70 3.51
133 134 3.014304 AGAATTGGCATGAGCTCACAT 57.986 42.857 20.97 0.00 41.70 3.21
205 215 7.981789 TGGTCAGTGCAAATGTAATTTTGTTAA 59.018 29.630 0.00 0.00 46.10 2.01
305 315 4.353777 TGGCTACTCTGATAGTGGAAGTT 58.646 43.478 0.00 0.00 38.95 2.66
325 335 6.207691 AGTTAATTGGGTGCATTGATACAC 57.792 37.500 0.00 0.00 36.03 2.90
329 339 1.211703 TGGGTGCATTGATACACGGAT 59.788 47.619 0.00 0.00 37.68 4.18
335 345 2.355756 GCATTGATACACGGATGCAGTT 59.644 45.455 0.00 0.00 43.23 3.16
336 346 3.789791 GCATTGATACACGGATGCAGTTG 60.790 47.826 0.00 0.00 43.23 3.16
337 347 1.368641 TGATACACGGATGCAGTTGC 58.631 50.000 0.00 0.00 42.50 4.17
378 404 9.594478 TGAAAATAGTCGATTGCTTAACATCTA 57.406 29.630 0.00 0.00 0.00 1.98
385 411 9.680315 AGTCGATTGCTTAACATCTATTAGTAC 57.320 33.333 0.00 0.00 0.00 2.73
683 714 9.162764 GAACAAACTATGCTAAAGGTAGATCAA 57.837 33.333 0.00 0.00 0.00 2.57
709 740 8.378565 AGACTTTCATCTGAAGTGGAATTCTAA 58.621 33.333 5.23 0.00 35.21 2.10
713 744 8.553459 TTCATCTGAAGTGGAATTCTAACTTC 57.447 34.615 28.82 28.82 46.47 3.01
758 789 9.961265 AAAAGTTTTAGTTAGAAATACACTGCC 57.039 29.630 0.00 0.00 0.00 4.85
817 848 8.399425 TGACGTTGTTAGTTTTTGATGTACAAT 58.601 29.630 0.00 0.00 38.36 2.71
830 861 7.780008 TTGATGTACAATATTTCGGTAGGTG 57.220 36.000 0.00 0.00 33.18 4.00
1096 1147 8.046708 AGGTTTGTGACTGCAATATTGATAGTA 58.953 33.333 19.73 5.18 30.68 1.82
1097 1148 8.338259 GGTTTGTGACTGCAATATTGATAGTAG 58.662 37.037 19.73 10.19 30.68 2.57
1098 1149 8.883731 GTTTGTGACTGCAATATTGATAGTAGT 58.116 33.333 19.73 12.93 30.68 2.73
1131 1182 8.588290 TGCCATGTCTTTATTTATGGTTTAGT 57.412 30.769 0.00 0.00 41.62 2.24
1285 1338 1.258445 CCCGTAAGTCTGCTCCCACT 61.258 60.000 0.00 0.00 0.00 4.00
1405 1466 7.737972 TCGTTTTGAAGTATCCTCAAATGAA 57.262 32.000 0.00 0.00 34.01 2.57
1554 1615 3.058016 ACTTGTGCACTACATTGTGATGC 60.058 43.478 19.41 16.16 39.48 3.91
1555 1616 2.781923 TGTGCACTACATTGTGATGCT 58.218 42.857 19.41 0.00 40.12 3.79
1798 1864 1.898154 GTGGCGAGAGGGCTTAAGA 59.102 57.895 6.67 0.00 42.84 2.10
1809 1880 2.757314 AGGGCTTAAGATGCTTGCTTTC 59.243 45.455 6.67 0.00 0.00 2.62
1890 1961 7.823665 TCATGTGTCGTGAACTACTAATACTT 58.176 34.615 0.00 0.00 0.00 2.24
1939 2010 4.740205 CGTACTCTGTGCCATACTATGTTG 59.260 45.833 0.00 0.00 0.00 3.33
2148 2293 1.743958 TCTGTGCTAGTAGCCGTCTTC 59.256 52.381 19.41 4.14 41.51 2.87
2151 2296 0.731417 TGCTAGTAGCCGTCTTCGTC 59.269 55.000 19.41 0.00 41.51 4.20
2172 2317 2.789409 AGCCAACCATAGACCTGAAC 57.211 50.000 0.00 0.00 0.00 3.18
2188 2364 3.157087 CTGAACCTGTGCTACCCAAAAT 58.843 45.455 0.00 0.00 0.00 1.82
2210 2386 4.868314 AGTAAGTCCTACAAGTTCGCTT 57.132 40.909 0.00 0.00 38.09 4.68
2231 2435 8.087750 TCGCTTTGGAAATTAGAAAATGTTCAT 58.912 29.630 0.00 0.00 36.09 2.57
2281 2592 0.557238 TGGTAGGAGGGCCGTGTATA 59.443 55.000 0.65 0.00 39.96 1.47
2285 2609 1.542492 AGGAGGGCCGTGTATATACG 58.458 55.000 14.41 14.41 43.35 3.06
2297 2621 5.700832 CCGTGTATATACGTTAGGTAGGTGA 59.299 44.000 18.91 0.00 42.24 4.02
2322 2811 5.388944 GTGTATTTCTACGAAGTGAGACGT 58.611 41.667 0.00 0.00 45.73 4.34
2366 4657 3.304559 GCAGTAGTCATAGCAAGTGTTCG 59.695 47.826 0.00 0.00 0.00 3.95
2430 4733 1.402968 CCGAATGACTGCATGAAAGGG 59.597 52.381 0.00 0.00 34.26 3.95
2432 4735 1.820519 GAATGACTGCATGAAAGGGCA 59.179 47.619 0.00 0.00 38.52 5.36
2434 4737 1.927487 TGACTGCATGAAAGGGCAAT 58.073 45.000 0.00 0.00 39.93 3.56
2436 4739 0.248289 ACTGCATGAAAGGGCAATGC 59.752 50.000 0.00 0.00 39.93 3.56
2460 7156 0.106819 ATGATGCAGTCAGGCCCTTC 60.107 55.000 0.00 0.00 40.92 3.46
2524 7220 3.913799 TGTTTCTTTCTACTCCATCCCCA 59.086 43.478 0.00 0.00 0.00 4.96
2569 7267 2.448542 CCGGTCTCCCATCCCCAT 60.449 66.667 0.00 0.00 0.00 4.00
2570 7268 2.822637 CCGGTCTCCCATCCCCATG 61.823 68.421 0.00 0.00 0.00 3.66
2571 7269 2.517919 GGTCTCCCATCCCCATGC 59.482 66.667 0.00 0.00 0.00 4.06
2572 7270 2.517919 GTCTCCCATCCCCATGCC 59.482 66.667 0.00 0.00 0.00 4.40
2573 7271 2.081161 GTCTCCCATCCCCATGCCT 61.081 63.158 0.00 0.00 0.00 4.75
2574 7272 2.080536 TCTCCCATCCCCATGCCTG 61.081 63.158 0.00 0.00 0.00 4.85
2575 7273 3.105248 TCCCATCCCCATGCCTGG 61.105 66.667 0.13 0.13 42.73 4.45
2576 7274 4.928140 CCCATCCCCATGCCTGGC 62.928 72.222 12.87 12.87 41.64 4.85
2577 7275 4.928140 CCATCCCCATGCCTGGCC 62.928 72.222 17.53 0.00 41.64 5.36
2578 7276 3.829226 CATCCCCATGCCTGGCCT 61.829 66.667 17.53 2.69 41.64 5.19
2579 7277 3.829226 ATCCCCATGCCTGGCCTG 61.829 66.667 17.53 16.69 41.64 4.85
2643 7341 1.589196 CGACCGATTCTTCTCCGCC 60.589 63.158 0.00 0.00 0.00 6.13
2644 7342 1.589196 GACCGATTCTTCTCCGCCG 60.589 63.158 0.00 0.00 0.00 6.46
2659 7357 2.186826 GCCGCCAGTTTGTGTCACT 61.187 57.895 4.27 0.00 0.00 3.41
2664 7362 1.502231 CCAGTTTGTGTCACTCTCCG 58.498 55.000 4.27 0.00 0.00 4.63
2680 7382 1.894756 CCGTCCGCCCAAAGTTTCA 60.895 57.895 0.00 0.00 0.00 2.69
2721 7426 0.618981 GGAATCCCGGAGACCTGTTT 59.381 55.000 0.73 0.00 0.00 2.83
2722 7427 1.407025 GGAATCCCGGAGACCTGTTTC 60.407 57.143 0.73 0.00 0.00 2.78
2751 7456 3.392882 CCACCAATCCAAAGCTTCAAAC 58.607 45.455 0.00 0.00 0.00 2.93
2753 7458 4.443315 CCACCAATCCAAAGCTTCAAACTT 60.443 41.667 0.00 0.00 0.00 2.66
2755 7460 5.691754 CACCAATCCAAAGCTTCAAACTTAC 59.308 40.000 0.00 0.00 0.00 2.34
2756 7461 5.221441 ACCAATCCAAAGCTTCAAACTTACC 60.221 40.000 0.00 0.00 0.00 2.85
2758 7463 5.712152 ATCCAAAGCTTCAAACTTACCAG 57.288 39.130 0.00 0.00 0.00 4.00
2771 7482 1.697082 TTACCAGTCCCGCCACAACA 61.697 55.000 0.00 0.00 0.00 3.33
2783 7494 1.021390 CCACAACATGGGCGTCTCTC 61.021 60.000 0.00 0.00 45.95 3.20
2789 7500 2.473760 ATGGGCGTCTCTCTCGTCG 61.474 63.158 0.00 0.00 33.53 5.12
2790 7501 3.878519 GGGCGTCTCTCTCGTCGG 61.879 72.222 0.00 0.00 33.53 4.79
2791 7502 4.539881 GGCGTCTCTCTCGTCGGC 62.540 72.222 0.00 0.00 41.00 5.54
2792 7503 3.501548 GCGTCTCTCTCGTCGGCT 61.502 66.667 0.00 0.00 0.00 5.52
2793 7504 2.704616 CGTCTCTCTCGTCGGCTC 59.295 66.667 0.00 0.00 0.00 4.70
2794 7505 2.815298 CGTCTCTCTCGTCGGCTCC 61.815 68.421 0.00 0.00 0.00 4.70
2795 7506 2.511829 TCTCTCTCGTCGGCTCCG 60.512 66.667 1.14 1.14 41.35 4.63
2796 7507 4.244802 CTCTCTCGTCGGCTCCGC 62.245 72.222 2.96 0.00 39.59 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.179368 TCAACTCCTCAAAAGATAAAGCACG 59.821 40.000 0.00 0.00 0.00 5.34
77 78 5.826208 CAGTCCTAAAACAAACTACCAACCT 59.174 40.000 0.00 0.00 0.00 3.50
90 91 4.628963 TCCAACCCTACAGTCCTAAAAC 57.371 45.455 0.00 0.00 0.00 2.43
205 215 6.376299 TGCTCTCAATATCAAGCTCAAAACAT 59.624 34.615 0.00 0.00 35.76 2.71
239 249 8.061920 TGATACTATCATTCCCAGATACCTAGG 58.938 40.741 7.41 7.41 33.59 3.02
305 315 3.629855 CCGTGTATCAATGCACCCAATTA 59.370 43.478 5.76 0.00 39.77 1.40
335 345 3.889520 TTCAAAATGGCTATGCATGCA 57.110 38.095 25.04 25.04 0.00 3.96
336 346 5.744666 ATTTTCAAAATGGCTATGCATGC 57.255 34.783 11.82 11.82 0.00 4.06
337 347 7.096353 CGACTATTTTCAAAATGGCTATGCATG 60.096 37.037 10.16 0.26 0.00 4.06
338 348 6.919662 CGACTATTTTCAAAATGGCTATGCAT 59.080 34.615 3.79 3.79 0.00 3.96
683 714 6.777782 AGAATTCCACTTCAGATGAAAGTCT 58.222 36.000 0.65 0.00 33.07 3.24
709 740 5.551233 TCATTCAAAAGATCAGACCGAAGT 58.449 37.500 0.00 0.00 0.00 3.01
817 848 4.098960 CAGCCTAGAACACCTACCGAAATA 59.901 45.833 0.00 0.00 0.00 1.40
830 861 3.629398 CCCAACAATCATCAGCCTAGAAC 59.371 47.826 0.00 0.00 0.00 3.01
906 939 7.425224 ACACAACTATAGCCTTCTCATAACT 57.575 36.000 0.00 0.00 0.00 2.24
1096 1147 8.823220 AAATAAAGACATGGCATAGGTAAACT 57.177 30.769 0.00 0.00 0.00 2.66
1285 1338 2.180276 GGCTTCTTCACTCCTCCAGTA 58.820 52.381 0.00 0.00 32.21 2.74
1405 1466 6.762661 ACTGCAAACTCAAGCACAAAATTTAT 59.237 30.769 0.00 0.00 36.62 1.40
1554 1615 8.908903 ACTATAAGAGTTGACATAACAGGAGAG 58.091 37.037 0.00 0.00 33.13 3.20
1555 1616 8.824756 ACTATAAGAGTTGACATAACAGGAGA 57.175 34.615 0.00 0.00 33.13 3.71
1604 1668 0.032130 GCACAGACAGAACGAGACCA 59.968 55.000 0.00 0.00 0.00 4.02
1605 1669 0.032130 TGCACAGACAGAACGAGACC 59.968 55.000 0.00 0.00 0.00 3.85
1798 1864 2.662309 CCACAGGGAAAGCAAGCAT 58.338 52.632 0.00 0.00 35.59 3.79
1809 1880 1.077212 CAGAGCCATTCCCACAGGG 60.077 63.158 0.00 0.00 46.11 4.45
1860 1931 5.103000 AGTAGTTCACGACACATGATAAGC 58.897 41.667 0.00 0.00 0.00 3.09
1890 1961 6.319399 CACTGACATATTACTACACACGACA 58.681 40.000 0.00 0.00 0.00 4.35
1939 2010 3.557595 CGAACAAATGATCCAGCTCTACC 59.442 47.826 0.00 0.00 0.00 3.18
2116 2261 5.939764 ACTAGCACAGATTGACAGGAATA 57.060 39.130 0.00 0.00 0.00 1.75
2148 2293 2.032620 AGGTCTATGGTTGGCTAGACG 58.967 52.381 0.00 0.00 43.07 4.18
2151 2296 3.432326 GGTTCAGGTCTATGGTTGGCTAG 60.432 52.174 0.00 0.00 0.00 3.42
2172 2317 5.497474 ACTTACTATTTTGGGTAGCACAGG 58.503 41.667 0.00 0.00 0.00 4.00
2188 2364 5.972107 AAGCGAACTTGTAGGACTTACTA 57.028 39.130 0.00 0.00 33.84 1.82
2231 2435 5.186215 TCAAGTGAGACCGGTATCATTTACA 59.814 40.000 31.46 21.26 30.70 2.41
2261 2572 0.759436 ATACACGGCCCTCCTACCAG 60.759 60.000 0.00 0.00 0.00 4.00
2281 2592 3.347216 ACACGTCACCTACCTAACGTAT 58.653 45.455 0.00 0.00 45.67 3.06
2285 2609 5.958955 AGAAATACACGTCACCTACCTAAC 58.041 41.667 0.00 0.00 0.00 2.34
2297 2621 5.388944 GTCTCACTTCGTAGAAATACACGT 58.611 41.667 0.00 0.00 45.90 4.49
2315 2804 1.661509 CGCAGTGAGCAACGTCTCA 60.662 57.895 2.98 2.98 46.13 3.27
2322 2811 1.665916 GCAGAGTCGCAGTGAGCAA 60.666 57.895 0.00 0.00 46.13 3.91
2366 4657 3.545703 CAATCCTGTCAGGTATGGGAAC 58.454 50.000 18.65 0.00 36.53 3.62
2436 4739 1.015109 GCCTGACTGCATCATCAGTG 58.985 55.000 17.02 11.60 46.40 3.66
2448 7144 1.777272 AGTCTTTTGAAGGGCCTGACT 59.223 47.619 6.92 11.75 0.00 3.41
2460 7156 3.535860 CGAAAGAACAGCGAGTCTTTTG 58.464 45.455 11.29 10.69 31.93 2.44
2593 7291 1.410224 GGAACAATGGGGATGGGAGAC 60.410 57.143 0.00 0.00 0.00 3.36
2594 7292 0.926293 GGAACAATGGGGATGGGAGA 59.074 55.000 0.00 0.00 0.00 3.71
2595 7293 0.106015 GGGAACAATGGGGATGGGAG 60.106 60.000 0.00 0.00 0.00 4.30
2596 7294 1.589399 GGGGAACAATGGGGATGGGA 61.589 60.000 0.00 0.00 0.00 4.37
2597 7295 1.075301 GGGGAACAATGGGGATGGG 60.075 63.158 0.00 0.00 0.00 4.00
2598 7296 1.455587 CGGGGAACAATGGGGATGG 60.456 63.158 0.00 0.00 0.00 3.51
2599 7297 2.127232 GCGGGGAACAATGGGGATG 61.127 63.158 0.00 0.00 0.00 3.51
2600 7298 2.278738 GCGGGGAACAATGGGGAT 59.721 61.111 0.00 0.00 0.00 3.85
2601 7299 2.938798 AGCGGGGAACAATGGGGA 60.939 61.111 0.00 0.00 0.00 4.81
2602 7300 2.755469 CAGCGGGGAACAATGGGG 60.755 66.667 0.00 0.00 0.00 4.96
2625 7323 1.589196 GGCGGAGAAGAATCGGTCG 60.589 63.158 0.00 0.00 0.00 4.79
2643 7341 0.861837 GAGAGTGACACAAACTGGCG 59.138 55.000 8.59 0.00 0.00 5.69
2644 7342 1.230324 GGAGAGTGACACAAACTGGC 58.770 55.000 8.59 0.00 0.00 4.85
2659 7357 2.047213 AAACTTTGGGCGGACGGAGA 62.047 55.000 0.00 0.00 0.00 3.71
2664 7362 1.524008 CCCTGAAACTTTGGGCGGAC 61.524 60.000 0.00 0.00 33.88 4.79
2721 7426 2.674754 GATTGGTGGGGCGGAAGA 59.325 61.111 0.00 0.00 0.00 2.87
2722 7427 2.440247 GGATTGGTGGGGCGGAAG 60.440 66.667 0.00 0.00 0.00 3.46
2751 7456 0.953960 GTTGTGGCGGGACTGGTAAG 60.954 60.000 0.00 0.00 0.00 2.34
2753 7458 1.485294 ATGTTGTGGCGGGACTGGTA 61.485 55.000 0.00 0.00 0.00 3.25
2755 7460 2.034066 ATGTTGTGGCGGGACTGG 59.966 61.111 0.00 0.00 0.00 4.00
2756 7461 2.334946 CCATGTTGTGGCGGGACTG 61.335 63.158 0.00 0.00 42.12 3.51
2771 7482 2.473760 CGACGAGAGAGACGCCCAT 61.474 63.158 0.00 0.00 0.00 4.00
2776 7487 2.704616 GAGCCGACGAGAGAGACG 59.295 66.667 0.00 0.00 0.00 4.18
2778 7489 2.511829 CGGAGCCGACGAGAGAGA 60.512 66.667 2.00 0.00 42.83 3.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.