Multiple sequence alignment - TraesCS2B01G337100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G337100 chr2B 100.000 3710 0 0 1 3710 481161933 481165642 0.000000e+00 6852.0
1 TraesCS2B01G337100 chr2B 85.475 179 26 0 300 478 249269775 249269953 1.760000e-43 187.0
2 TraesCS2B01G337100 chr2B 89.474 114 12 0 495 608 722376658 722376545 1.070000e-30 145.0
3 TraesCS2B01G337100 chr2B 87.719 114 14 0 495 608 694428457 694428344 2.320000e-27 134.0
4 TraesCS2B01G337100 chr2B 93.333 90 5 1 2396 2484 736103240 736103151 8.360000e-27 132.0
5 TraesCS2B01G337100 chr2B 91.489 94 7 1 2389 2481 103270296 103270389 1.080000e-25 128.0
6 TraesCS2B01G337100 chr2B 86.842 114 15 0 495 608 694449059 694448946 1.080000e-25 128.0
7 TraesCS2B01G337100 chr2D 94.770 1587 69 4 500 2072 405631780 405633366 0.000000e+00 2459.0
8 TraesCS2B01G337100 chr2D 93.646 1259 46 12 2477 3709 405633674 405634924 0.000000e+00 1851.0
9 TraesCS2B01G337100 chr2D 83.667 300 20 12 1 299 405631472 405631743 4.750000e-64 255.0
10 TraesCS2B01G337100 chr2D 86.885 183 17 4 298 478 193146857 193147034 8.130000e-47 198.0
11 TraesCS2B01G337100 chr2D 83.871 186 26 3 298 480 351977096 351977280 1.370000e-39 174.0
12 TraesCS2B01G337100 chr2D 90.598 117 11 0 495 611 577349102 577348986 4.960000e-34 156.0
13 TraesCS2B01G337100 chr2D 78.414 227 46 2 1568 1791 405411529 405411755 1.070000e-30 145.0
14 TraesCS2B01G337100 chr2D 94.595 37 0 2 54 90 645950247 645950213 5.180000e-04 56.5
15 TraesCS2B01G337100 chr2A 93.432 1492 88 8 495 1980 543761542 543763029 0.000000e+00 2204.0
16 TraesCS2B01G337100 chr2A 92.099 405 26 4 2517 2919 543763490 543763890 1.930000e-157 566.0
17 TraesCS2B01G337100 chr2A 82.550 447 60 8 1961 2390 543763040 543763485 9.730000e-101 377.0
18 TraesCS2B01G337100 chr2A 88.710 186 18 2 298 481 735925895 735925711 1.340000e-54 224.0
19 TraesCS2B01G337100 chr5A 89.362 188 17 2 298 483 311913707 311913521 2.230000e-57 233.0
20 TraesCS2B01G337100 chr7A 87.831 189 19 4 298 483 154391338 154391525 6.240000e-53 219.0
21 TraesCS2B01G337100 chr1D 88.172 186 17 4 298 481 227645388 227645570 2.240000e-52 217.0
22 TraesCS2B01G337100 chr1D 81.383 188 32 3 298 482 290704609 290704422 2.310000e-32 150.0
23 TraesCS2B01G337100 chr1D 93.407 91 5 1 2390 2479 58438877 58438787 2.320000e-27 134.0
24 TraesCS2B01G337100 chr5B 80.628 191 31 4 298 482 14700078 14700268 3.860000e-30 143.0
25 TraesCS2B01G337100 chr5B 73.859 241 41 12 68 304 162103631 162103409 3.970000e-10 76.8
26 TraesCS2B01G337100 chr1B 94.382 89 4 1 2395 2482 33839406 33839318 6.460000e-28 135.0
27 TraesCS2B01G337100 chr3B 94.318 88 4 1 2396 2482 801314299 801314212 2.320000e-27 134.0
28 TraesCS2B01G337100 chrUn 92.391 92 6 1 2389 2479 62663395 62663486 3.010000e-26 130.0
29 TraesCS2B01G337100 chr7B 92.391 92 6 1 2395 2485 661996478 661996387 3.010000e-26 130.0
30 TraesCS2B01G337100 chr5D 91.579 95 6 2 2387 2479 367998077 367998171 3.010000e-26 130.0
31 TraesCS2B01G337100 chr5D 74.790 238 43 8 67 304 170235834 170235614 1.420000e-14 91.6
32 TraesCS2B01G337100 chr6B 89.216 102 9 2 2382 2482 218219327 218219427 3.890000e-25 126.0
33 TraesCS2B01G337100 chr7D 91.781 73 6 0 162 234 19190992 19191064 6.560000e-18 102.0
34 TraesCS2B01G337100 chr7D 96.774 31 1 0 3513 3543 108343215 108343185 7.000000e-03 52.8
35 TraesCS2B01G337100 chr7D 96.774 31 1 0 3513 3543 108364884 108364854 7.000000e-03 52.8
36 TraesCS2B01G337100 chr4D 92.683 41 2 1 64 103 354008731 354008771 1.440000e-04 58.4
37 TraesCS2B01G337100 chr3A 100.000 29 0 0 64 92 561670261 561670233 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G337100 chr2B 481161933 481165642 3709 False 6852.000000 6852 100.000000 1 3710 1 chr2B.!!$F3 3709
1 TraesCS2B01G337100 chr2D 405631472 405634924 3452 False 1521.666667 2459 90.694333 1 3709 3 chr2D.!!$F4 3708
2 TraesCS2B01G337100 chr2A 543761542 543763890 2348 False 1049.000000 2204 89.360333 495 2919 3 chr2A.!!$F1 2424

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
145 147 0.034574 AGATACATGGCACCCGCAAA 60.035 50.0 0.00 0.00 41.24 3.68 F
241 243 0.038159 CCGCTTGAAGTCTTCGGAGT 60.038 55.0 8.06 0.00 42.43 3.85 F
1868 1880 0.168348 GCAGCTGCTGATGTTCAGTG 59.832 55.0 32.30 3.79 45.94 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1330 1335 0.089516 CGAAACGCGTGTAACCGTAC 59.910 55.0 14.98 0.0 41.56 3.67 R
2163 2214 0.389025 GGGGCACTCAACTTGGTTTG 59.611 55.0 0.00 0.0 0.00 2.93 R
2987 3048 0.391263 GGTAGGCCGTTCCTTCAGTG 60.391 60.0 0.00 0.0 44.75 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 5.133153 ACCTTCTACAACCTTTACCCAAAGA 59.867 40.000 0.00 0.00 43.32 2.52
58 59 6.256643 TCTACAACCTTTACCCAAAGAGTT 57.743 37.500 0.00 0.03 43.32 3.01
60 61 7.120716 TCTACAACCTTTACCCAAAGAGTTTT 58.879 34.615 0.00 0.00 43.32 2.43
61 62 6.216801 ACAACCTTTACCCAAAGAGTTTTC 57.783 37.500 0.00 0.00 43.32 2.29
66 67 1.605753 ACCCAAAGAGTTTTCCGCTC 58.394 50.000 0.00 0.00 0.00 5.03
68 69 0.517316 CCAAAGAGTTTTCCGCTCCG 59.483 55.000 0.00 0.00 33.69 4.63
116 118 8.672815 CATACAAATACATCCATACAACACACA 58.327 33.333 0.00 0.00 0.00 3.72
117 119 7.701539 ACAAATACATCCATACAACACACAT 57.298 32.000 0.00 0.00 0.00 3.21
119 121 8.892723 ACAAATACATCCATACAACACACATAG 58.107 33.333 0.00 0.00 0.00 2.23
121 123 9.679661 AAATACATCCATACAACACACATAGAA 57.320 29.630 0.00 0.00 0.00 2.10
122 124 8.893219 ATACATCCATACAACACACATAGAAG 57.107 34.615 0.00 0.00 0.00 2.85
123 125 6.115446 ACATCCATACAACACACATAGAAGG 58.885 40.000 0.00 0.00 0.00 3.46
124 126 4.513442 TCCATACAACACACATAGAAGGC 58.487 43.478 0.00 0.00 0.00 4.35
125 127 4.225042 TCCATACAACACACATAGAAGGCT 59.775 41.667 0.00 0.00 0.00 4.58
126 128 5.423931 TCCATACAACACACATAGAAGGCTA 59.576 40.000 0.00 0.00 0.00 3.93
127 129 5.755375 CCATACAACACACATAGAAGGCTAG 59.245 44.000 0.00 0.00 0.00 3.42
128 130 6.406961 CCATACAACACACATAGAAGGCTAGA 60.407 42.308 0.00 0.00 0.00 2.43
129 131 5.683876 ACAACACACATAGAAGGCTAGAT 57.316 39.130 0.00 0.00 0.00 1.98
130 132 6.791867 ACAACACACATAGAAGGCTAGATA 57.208 37.500 0.00 0.00 0.00 1.98
131 133 6.574350 ACAACACACATAGAAGGCTAGATAC 58.426 40.000 0.00 0.00 0.00 2.24
132 134 6.154534 ACAACACACATAGAAGGCTAGATACA 59.845 38.462 0.00 0.00 0.00 2.29
133 135 6.985653 ACACACATAGAAGGCTAGATACAT 57.014 37.500 0.00 0.00 0.00 2.29
134 136 6.753180 ACACACATAGAAGGCTAGATACATG 58.247 40.000 0.00 0.00 0.00 3.21
135 137 6.162079 CACACATAGAAGGCTAGATACATGG 58.838 44.000 0.00 0.00 0.00 3.66
136 138 5.174395 CACATAGAAGGCTAGATACATGGC 58.826 45.833 0.00 0.00 0.00 4.40
137 139 4.840680 ACATAGAAGGCTAGATACATGGCA 59.159 41.667 0.00 0.00 0.00 4.92
138 140 3.760580 AGAAGGCTAGATACATGGCAC 57.239 47.619 0.00 0.00 0.00 5.01
139 141 2.370189 AGAAGGCTAGATACATGGCACC 59.630 50.000 0.00 0.00 0.00 5.01
140 142 1.059913 AGGCTAGATACATGGCACCC 58.940 55.000 0.00 0.00 0.00 4.61
141 143 0.320771 GGCTAGATACATGGCACCCG 60.321 60.000 0.00 0.00 0.00 5.28
142 144 0.951040 GCTAGATACATGGCACCCGC 60.951 60.000 0.00 0.00 37.44 6.13
143 145 0.392706 CTAGATACATGGCACCCGCA 59.607 55.000 0.00 0.00 41.24 5.69
144 146 0.833949 TAGATACATGGCACCCGCAA 59.166 50.000 0.00 0.00 41.24 4.85
145 147 0.034574 AGATACATGGCACCCGCAAA 60.035 50.000 0.00 0.00 41.24 3.68
146 148 0.100503 GATACATGGCACCCGCAAAC 59.899 55.000 0.00 0.00 41.24 2.93
147 149 0.610509 ATACATGGCACCCGCAAACA 60.611 50.000 0.00 0.00 41.24 2.83
148 150 0.823769 TACATGGCACCCGCAAACAA 60.824 50.000 0.00 0.00 41.24 2.83
149 151 1.068753 CATGGCACCCGCAAACAAA 59.931 52.632 0.00 0.00 41.24 2.83
193 195 5.836024 AATGAACAACTACTCTACCCCAA 57.164 39.130 0.00 0.00 0.00 4.12
205 207 2.781174 TCTACCCCAAAACACTCCAAGT 59.219 45.455 0.00 0.00 0.00 3.16
214 216 6.459161 CCCAAAACACTCCAAGTAAACTACAC 60.459 42.308 0.00 0.00 0.00 2.90
223 225 3.589495 AGTAAACTACACGAGGAAGCC 57.411 47.619 0.00 0.00 0.00 4.35
235 237 0.398318 AGGAAGCCGCTTGAAGTCTT 59.602 50.000 11.20 0.00 0.00 3.01
241 243 0.038159 CCGCTTGAAGTCTTCGGAGT 60.038 55.000 8.06 0.00 42.43 3.85
316 318 3.842732 GTACTACACCAATGTTTGCCC 57.157 47.619 0.00 0.00 40.48 5.36
317 319 1.243902 ACTACACCAATGTTTGCCCG 58.756 50.000 0.00 0.00 40.48 6.13
318 320 1.202830 ACTACACCAATGTTTGCCCGA 60.203 47.619 0.00 0.00 40.48 5.14
319 321 1.199097 CTACACCAATGTTTGCCCGAC 59.801 52.381 0.00 0.00 40.48 4.79
320 322 0.467290 ACACCAATGTTTGCCCGACT 60.467 50.000 0.00 0.00 34.46 4.18
321 323 0.240945 CACCAATGTTTGCCCGACTC 59.759 55.000 0.00 0.00 0.00 3.36
322 324 0.893727 ACCAATGTTTGCCCGACTCC 60.894 55.000 0.00 0.00 0.00 3.85
323 325 1.501741 CAATGTTTGCCCGACTCCG 59.498 57.895 0.00 0.00 0.00 4.63
324 326 0.953471 CAATGTTTGCCCGACTCCGA 60.953 55.000 0.00 0.00 38.22 4.55
325 327 0.953960 AATGTTTGCCCGACTCCGAC 60.954 55.000 0.00 0.00 38.22 4.79
326 328 3.110178 GTTTGCCCGACTCCGACG 61.110 66.667 0.00 0.00 38.22 5.12
327 329 3.296836 TTTGCCCGACTCCGACGA 61.297 61.111 0.00 0.00 38.22 4.20
328 330 3.277211 TTTGCCCGACTCCGACGAG 62.277 63.158 0.00 0.00 42.32 4.18
331 333 4.790962 CCCGACTCCGACGAGGGA 62.791 72.222 0.00 0.00 44.70 4.20
339 341 2.902846 CGACGAGGGAGAGGCGAT 60.903 66.667 0.00 0.00 0.00 4.58
340 342 2.725008 GACGAGGGAGAGGCGATG 59.275 66.667 0.00 0.00 0.00 3.84
341 343 1.824329 GACGAGGGAGAGGCGATGA 60.824 63.158 0.00 0.00 0.00 2.92
342 344 2.065906 GACGAGGGAGAGGCGATGAC 62.066 65.000 0.00 0.00 0.00 3.06
343 345 1.826054 CGAGGGAGAGGCGATGACT 60.826 63.158 0.00 0.00 0.00 3.41
354 356 3.567797 GATGACTGCGGCGCCTTC 61.568 66.667 30.82 24.36 0.00 3.46
367 369 2.262915 CCTTCGGCTCGCTTCAGT 59.737 61.111 0.00 0.00 0.00 3.41
368 370 2.097038 CCTTCGGCTCGCTTCAGTG 61.097 63.158 0.00 0.00 0.00 3.66
369 371 2.734673 CTTCGGCTCGCTTCAGTGC 61.735 63.158 0.00 0.00 0.00 4.40
370 372 3.513768 TTCGGCTCGCTTCAGTGCA 62.514 57.895 0.00 0.00 32.81 4.57
371 373 2.786539 TTCGGCTCGCTTCAGTGCAT 62.787 55.000 0.00 0.00 32.81 3.96
373 375 2.037136 GGCTCGCTTCAGTGCATGT 61.037 57.895 0.00 0.00 32.81 3.21
374 376 0.740868 GGCTCGCTTCAGTGCATGTA 60.741 55.000 0.00 0.00 32.81 2.29
375 377 0.649475 GCTCGCTTCAGTGCATGTAG 59.351 55.000 0.00 0.00 0.00 2.74
376 378 2.001812 CTCGCTTCAGTGCATGTAGT 57.998 50.000 0.00 0.00 0.00 2.73
377 379 1.923204 CTCGCTTCAGTGCATGTAGTC 59.077 52.381 0.00 0.00 0.00 2.59
378 380 1.272212 TCGCTTCAGTGCATGTAGTCA 59.728 47.619 0.00 0.00 0.00 3.41
379 381 2.094026 TCGCTTCAGTGCATGTAGTCAT 60.094 45.455 0.00 0.00 34.21 3.06
380 382 2.283617 CGCTTCAGTGCATGTAGTCATC 59.716 50.000 0.00 0.00 31.15 2.92
381 383 2.283617 GCTTCAGTGCATGTAGTCATCG 59.716 50.000 0.00 0.00 31.15 3.84
382 384 1.926561 TCAGTGCATGTAGTCATCGC 58.073 50.000 0.00 0.00 31.15 4.58
383 385 1.478105 TCAGTGCATGTAGTCATCGCT 59.522 47.619 0.00 0.00 33.04 4.93
384 386 2.687935 TCAGTGCATGTAGTCATCGCTA 59.312 45.455 0.00 0.00 33.04 4.26
385 387 3.048501 CAGTGCATGTAGTCATCGCTAG 58.951 50.000 0.00 0.00 33.04 3.42
386 388 2.035193 AGTGCATGTAGTCATCGCTAGG 59.965 50.000 0.00 0.00 33.04 3.02
387 389 2.031870 TGCATGTAGTCATCGCTAGGT 58.968 47.619 0.00 0.00 33.04 3.08
388 390 2.223805 TGCATGTAGTCATCGCTAGGTG 60.224 50.000 0.00 0.00 33.04 4.00
389 391 2.864097 GCATGTAGTCATCGCTAGGTGG 60.864 54.545 0.00 0.00 31.15 4.61
390 392 2.139323 TGTAGTCATCGCTAGGTGGT 57.861 50.000 0.00 0.00 0.00 4.16
391 393 2.453521 TGTAGTCATCGCTAGGTGGTT 58.546 47.619 0.00 0.00 0.00 3.67
392 394 2.829720 TGTAGTCATCGCTAGGTGGTTT 59.170 45.455 0.00 0.00 0.00 3.27
393 395 4.018490 TGTAGTCATCGCTAGGTGGTTTA 58.982 43.478 0.00 0.00 0.00 2.01
394 396 4.647853 TGTAGTCATCGCTAGGTGGTTTAT 59.352 41.667 0.00 0.00 0.00 1.40
395 397 4.060038 AGTCATCGCTAGGTGGTTTATG 57.940 45.455 0.00 0.00 0.00 1.90
396 398 3.704566 AGTCATCGCTAGGTGGTTTATGA 59.295 43.478 0.00 0.00 0.00 2.15
397 399 4.161565 AGTCATCGCTAGGTGGTTTATGAA 59.838 41.667 0.00 0.00 0.00 2.57
398 400 4.270325 GTCATCGCTAGGTGGTTTATGAAC 59.730 45.833 0.00 0.00 34.96 3.18
415 417 9.353999 GTTTATGAACCTGGATGTAAATTTGAC 57.646 33.333 0.00 0.00 0.00 3.18
416 418 8.877864 TTATGAACCTGGATGTAAATTTGACT 57.122 30.769 0.00 0.00 0.00 3.41
417 419 7.781324 ATGAACCTGGATGTAAATTTGACTT 57.219 32.000 0.00 0.00 0.00 3.01
418 420 7.214467 TGAACCTGGATGTAAATTTGACTTC 57.786 36.000 0.00 3.71 0.00 3.01
419 421 7.004086 TGAACCTGGATGTAAATTTGACTTCT 58.996 34.615 0.00 0.00 0.00 2.85
420 422 8.160765 TGAACCTGGATGTAAATTTGACTTCTA 58.839 33.333 0.00 1.54 0.00 2.10
421 423 8.567285 AACCTGGATGTAAATTTGACTTCTAG 57.433 34.615 0.00 9.45 32.60 2.43
422 424 7.690256 ACCTGGATGTAAATTTGACTTCTAGT 58.310 34.615 0.00 0.00 31.57 2.57
423 425 7.607991 ACCTGGATGTAAATTTGACTTCTAGTG 59.392 37.037 0.00 7.17 31.57 2.74
424 426 7.607991 CCTGGATGTAAATTTGACTTCTAGTGT 59.392 37.037 0.00 0.00 31.57 3.55
425 427 8.918202 TGGATGTAAATTTGACTTCTAGTGTT 57.082 30.769 0.00 0.00 0.00 3.32
426 428 8.999431 TGGATGTAAATTTGACTTCTAGTGTTC 58.001 33.333 0.00 0.00 0.00 3.18
427 429 9.220767 GGATGTAAATTTGACTTCTAGTGTTCT 57.779 33.333 0.00 0.00 0.00 3.01
437 439 9.485206 TTGACTTCTAGTGTTCTTTGTATTACC 57.515 33.333 0.00 0.00 0.00 2.85
438 440 8.867097 TGACTTCTAGTGTTCTTTGTATTACCT 58.133 33.333 0.00 0.00 0.00 3.08
439 441 9.708092 GACTTCTAGTGTTCTTTGTATTACCTT 57.292 33.333 0.00 0.00 0.00 3.50
440 442 9.490379 ACTTCTAGTGTTCTTTGTATTACCTTG 57.510 33.333 0.00 0.00 0.00 3.61
441 443 9.706691 CTTCTAGTGTTCTTTGTATTACCTTGA 57.293 33.333 0.00 0.00 0.00 3.02
442 444 9.485206 TTCTAGTGTTCTTTGTATTACCTTGAC 57.515 33.333 0.00 0.00 0.00 3.18
443 445 8.644216 TCTAGTGTTCTTTGTATTACCTTGACA 58.356 33.333 0.00 0.00 0.00 3.58
444 446 7.730364 AGTGTTCTTTGTATTACCTTGACAG 57.270 36.000 0.00 0.00 0.00 3.51
445 447 7.506114 AGTGTTCTTTGTATTACCTTGACAGA 58.494 34.615 0.00 0.00 0.00 3.41
446 448 8.157476 AGTGTTCTTTGTATTACCTTGACAGAT 58.843 33.333 0.00 0.00 0.00 2.90
447 449 8.230486 GTGTTCTTTGTATTACCTTGACAGATG 58.770 37.037 0.00 0.00 0.00 2.90
448 450 7.936847 TGTTCTTTGTATTACCTTGACAGATGT 59.063 33.333 0.00 0.00 0.00 3.06
449 451 8.784043 GTTCTTTGTATTACCTTGACAGATGTT 58.216 33.333 0.00 0.00 0.00 2.71
450 452 8.322906 TCTTTGTATTACCTTGACAGATGTTG 57.677 34.615 0.00 0.00 0.00 3.33
451 453 8.154203 TCTTTGTATTACCTTGACAGATGTTGA 58.846 33.333 0.00 0.00 0.00 3.18
452 454 8.684386 TTTGTATTACCTTGACAGATGTTGAA 57.316 30.769 0.00 0.00 0.00 2.69
453 455 8.862325 TTGTATTACCTTGACAGATGTTGAAT 57.138 30.769 0.00 0.00 0.00 2.57
454 456 9.952030 TTGTATTACCTTGACAGATGTTGAATA 57.048 29.630 0.00 0.00 0.00 1.75
455 457 9.599866 TGTATTACCTTGACAGATGTTGAATAG 57.400 33.333 0.00 0.00 0.00 1.73
456 458 9.817809 GTATTACCTTGACAGATGTTGAATAGA 57.182 33.333 0.00 0.00 0.00 1.98
458 460 8.948631 TTACCTTGACAGATGTTGAATAGATC 57.051 34.615 0.00 0.00 0.00 2.75
459 461 6.045318 ACCTTGACAGATGTTGAATAGATCG 58.955 40.000 0.00 0.00 31.98 3.69
460 462 5.464722 CCTTGACAGATGTTGAATAGATCGG 59.535 44.000 0.00 0.00 31.98 4.18
461 463 5.852282 TGACAGATGTTGAATAGATCGGA 57.148 39.130 0.00 0.00 31.98 4.55
462 464 6.220726 TGACAGATGTTGAATAGATCGGAA 57.779 37.500 0.00 0.00 31.98 4.30
463 465 6.276091 TGACAGATGTTGAATAGATCGGAAG 58.724 40.000 0.00 0.00 31.98 3.46
464 466 6.127338 TGACAGATGTTGAATAGATCGGAAGT 60.127 38.462 0.00 0.00 31.98 3.01
465 467 6.644347 ACAGATGTTGAATAGATCGGAAGTT 58.356 36.000 0.00 0.00 31.98 2.66
466 468 7.106239 ACAGATGTTGAATAGATCGGAAGTTT 58.894 34.615 0.00 0.00 31.98 2.66
467 469 7.607991 ACAGATGTTGAATAGATCGGAAGTTTT 59.392 33.333 0.00 0.00 31.98 2.43
468 470 8.119226 CAGATGTTGAATAGATCGGAAGTTTTC 58.881 37.037 0.00 0.00 31.98 2.29
469 471 8.043710 AGATGTTGAATAGATCGGAAGTTTTCT 58.956 33.333 0.00 0.00 31.98 2.52
470 472 7.596749 TGTTGAATAGATCGGAAGTTTTCTC 57.403 36.000 0.00 0.00 0.00 2.87
471 473 6.310467 TGTTGAATAGATCGGAAGTTTTCTCG 59.690 38.462 0.00 0.00 0.00 4.04
472 474 4.804139 TGAATAGATCGGAAGTTTTCTCGC 59.196 41.667 0.00 0.00 0.00 5.03
473 475 2.743636 AGATCGGAAGTTTTCTCGCA 57.256 45.000 0.00 0.00 0.00 5.10
474 476 3.040147 AGATCGGAAGTTTTCTCGCAA 57.960 42.857 0.00 0.00 0.00 4.85
475 477 3.399330 AGATCGGAAGTTTTCTCGCAAA 58.601 40.909 0.00 0.00 0.00 3.68
476 478 3.813166 AGATCGGAAGTTTTCTCGCAAAA 59.187 39.130 0.00 0.00 0.00 2.44
477 479 4.274950 AGATCGGAAGTTTTCTCGCAAAAA 59.725 37.500 0.00 0.00 0.00 1.94
547 549 1.200020 GTTTCCCTCGAAGCAACATGG 59.800 52.381 0.00 0.00 0.00 3.66
564 566 3.193691 ACATGGAGGACGAAGAGTAACTG 59.806 47.826 0.00 0.00 0.00 3.16
596 598 0.447801 CAAGAAGGAAATGACGCCCG 59.552 55.000 0.00 0.00 0.00 6.13
645 647 0.676151 GAGAGGCCTTTGGAGTGCAG 60.676 60.000 6.77 0.00 0.00 4.41
774 777 2.536066 ACCCAATTTAAGGAACCAGGC 58.464 47.619 0.00 0.00 0.00 4.85
882 886 5.658634 TGGTGCAGACTGATAAGATCTAAGT 59.341 40.000 6.65 0.00 0.00 2.24
889 893 8.143193 CAGACTGATAAGATCTAAGTTGAGCAT 58.857 37.037 0.00 0.00 0.00 3.79
1055 1060 3.138798 GGCGCTCTACACTCCGGA 61.139 66.667 7.64 2.93 0.00 5.14
1268 1273 4.748144 CAGCTGTTCCAGGCCCCC 62.748 72.222 5.25 0.00 31.21 5.40
1276 1281 2.261729 GTTCCAGGCCCCCAAAATTTA 58.738 47.619 0.00 0.00 0.00 1.40
1284 1289 2.236146 GCCCCCAAAATTTACCAAGAGG 59.764 50.000 0.00 0.00 42.21 3.69
1298 1303 3.137360 ACCAAGAGGAAATCTCCCTATGC 59.863 47.826 0.00 0.00 43.64 3.14
1330 1335 2.304056 ATGGTGAGTGCAGAGGGGG 61.304 63.158 0.00 0.00 0.00 5.40
1338 1343 1.078891 TGCAGAGGGGGTACGGTTA 59.921 57.895 0.00 0.00 0.00 2.85
1343 1348 2.125552 GGGGGTACGGTTACACGC 60.126 66.667 0.00 0.00 37.39 5.34
1381 1390 5.395657 CCTTCTCACATTCACAGGCTATGTA 60.396 44.000 0.54 0.00 41.41 2.29
1439 1448 5.220777 CGTCCTTGTTGCAATACCGATTTAT 60.221 40.000 0.59 0.00 0.00 1.40
1495 1505 6.961360 TTCAGATATCCACGACTTCTGTAT 57.039 37.500 0.00 0.00 36.17 2.29
1500 1510 7.965655 CAGATATCCACGACTTCTGTATATGTC 59.034 40.741 0.00 0.00 31.36 3.06
1507 1517 6.975197 CACGACTTCTGTATATGTCATCTGTT 59.025 38.462 0.00 0.00 0.00 3.16
1553 1565 6.706270 TCTCAACTTCTGTCTGGTTGTAATTC 59.294 38.462 0.00 0.00 40.52 2.17
1586 1598 6.928348 TTTGTAGATAAGGTGGAGAAGACA 57.072 37.500 0.00 0.00 0.00 3.41
1707 1719 0.822532 GGCAGCATCCAGGATCAAGG 60.823 60.000 0.00 0.00 0.00 3.61
1778 1790 5.450818 TCCATAAGGTTAGGTTGATTGCT 57.549 39.130 0.00 0.00 35.89 3.91
1868 1880 0.168348 GCAGCTGCTGATGTTCAGTG 59.832 55.000 32.30 3.79 45.94 3.66
1869 1881 0.168348 CAGCTGCTGATGTTCAGTGC 59.832 55.000 24.88 13.02 45.94 4.40
1914 1926 2.666862 CGTGCAAGTTACCGGCCA 60.667 61.111 0.00 0.00 0.00 5.36
1957 1969 2.681706 AGAGATGCGTGTTGACTTCTG 58.318 47.619 0.00 0.00 0.00 3.02
2002 2044 2.602878 GCAGCGTTGCTACACTACTTA 58.397 47.619 17.71 0.00 46.95 2.24
2050 2100 2.077627 TGCTCCTGCGCGTTAAAAATA 58.922 42.857 8.43 0.00 43.34 1.40
2059 2109 5.603452 TGCGCGTTAAAAATATTTTTGCAG 58.397 33.333 28.45 20.67 40.33 4.41
2140 2190 5.072741 TCTGCAAATGCTTAGAGGAAAAGT 58.927 37.500 6.97 0.00 42.66 2.66
2163 2214 4.096833 TCCAATCATATTGACTTGTGCAGC 59.903 41.667 1.23 0.00 0.00 5.25
2167 2218 4.797471 TCATATTGACTTGTGCAGCAAAC 58.203 39.130 0.00 0.00 36.53 2.93
2185 2236 0.540365 ACCAAGTTGAGTGCCCCATG 60.540 55.000 3.87 0.00 0.00 3.66
2189 2240 2.890311 CAAGTTGAGTGCCCCATGTTTA 59.110 45.455 0.00 0.00 0.00 2.01
2196 2247 2.234414 AGTGCCCCATGTTTAGCATTTG 59.766 45.455 0.00 0.00 37.60 2.32
2239 2292 1.268794 TGGCCGACGAACAAAATTGTG 60.269 47.619 0.00 0.00 41.31 3.33
2263 2316 4.264145 CAGTTTCGCGTGAAAATTGTCAAA 59.736 37.500 24.56 0.00 45.22 2.69
2266 2319 3.958704 TCGCGTGAAAATTGTCAAACAT 58.041 36.364 5.77 0.00 0.00 2.71
2268 2322 3.119463 CGCGTGAAAATTGTCAAACATCC 59.881 43.478 0.00 0.00 0.00 3.51
2272 2326 5.976534 CGTGAAAATTGTCAAACATCCTTGA 59.023 36.000 0.00 0.00 32.89 3.02
2281 2335 6.061441 TGTCAAACATCCTTGAACACTACAT 58.939 36.000 0.00 0.00 37.08 2.29
2283 2337 5.473162 TCAAACATCCTTGAACACTACATGG 59.527 40.000 0.00 0.00 32.39 3.66
2285 2339 5.441718 ACATCCTTGAACACTACATGGAT 57.558 39.130 0.00 0.00 46.16 3.41
2351 2406 7.750229 TCTGAATTTACTGTTCATTTGCTCT 57.250 32.000 0.00 0.00 35.26 4.09
2357 2412 4.090761 ACTGTTCATTTGCTCTGGAGAA 57.909 40.909 1.35 0.00 0.00 2.87
2359 2414 3.149196 TGTTCATTTGCTCTGGAGAACC 58.851 45.455 1.35 0.00 35.68 3.62
2390 2449 6.205464 GTCATGCTAAATTAGATGGCAGCTAA 59.795 38.462 25.50 25.50 36.35 3.09
2392 2451 7.449395 TCATGCTAAATTAGATGGCAGCTAATT 59.551 33.333 33.54 33.54 45.53 1.40
2394 2453 6.016024 TGCTAAATTAGATGGCAGCTAATTGG 60.016 38.462 37.11 31.87 43.85 3.16
2395 2454 6.015940 GCTAAATTAGATGGCAGCTAATTGGT 60.016 38.462 37.11 28.36 43.85 3.67
2397 2456 6.884280 AATTAGATGGCAGCTAATTGGTAC 57.116 37.500 36.43 1.52 43.31 3.34
2399 2458 4.078639 AGATGGCAGCTAATTGGTACTC 57.921 45.455 1.98 0.00 0.00 2.59
2400 2459 2.710096 TGGCAGCTAATTGGTACTCC 57.290 50.000 0.00 0.00 0.00 3.85
2401 2460 1.211949 TGGCAGCTAATTGGTACTCCC 59.788 52.381 0.00 0.00 0.00 4.30
2402 2461 1.490910 GGCAGCTAATTGGTACTCCCT 59.509 52.381 0.00 0.00 0.00 4.20
2403 2462 2.485657 GGCAGCTAATTGGTACTCCCTC 60.486 54.545 0.00 0.00 0.00 4.30
2404 2463 2.485657 GCAGCTAATTGGTACTCCCTCC 60.486 54.545 0.00 0.00 0.00 4.30
2405 2464 2.040178 AGCTAATTGGTACTCCCTCCG 58.960 52.381 0.00 0.00 0.00 4.63
2406 2465 1.761198 GCTAATTGGTACTCCCTCCGT 59.239 52.381 0.00 0.00 0.00 4.69
2407 2466 2.223994 GCTAATTGGTACTCCCTCCGTC 60.224 54.545 0.00 0.00 0.00 4.79
2408 2467 1.201424 AATTGGTACTCCCTCCGTCC 58.799 55.000 0.00 0.00 0.00 4.79
2409 2468 0.690077 ATTGGTACTCCCTCCGTCCC 60.690 60.000 0.00 0.00 0.00 4.46
2410 2469 2.096707 TTGGTACTCCCTCCGTCCCA 62.097 60.000 0.00 0.00 0.00 4.37
2411 2470 1.075450 GGTACTCCCTCCGTCCCAT 60.075 63.158 0.00 0.00 0.00 4.00
2412 2471 0.186873 GGTACTCCCTCCGTCCCATA 59.813 60.000 0.00 0.00 0.00 2.74
2413 2472 1.412074 GGTACTCCCTCCGTCCCATAA 60.412 57.143 0.00 0.00 0.00 1.90
2414 2473 2.606378 GTACTCCCTCCGTCCCATAAT 58.394 52.381 0.00 0.00 0.00 1.28
2415 2474 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
2416 2475 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
2417 2476 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
2418 2477 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
2419 2478 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
2420 2479 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
2421 2480 3.244112 CCCTCCGTCCCATAATGTAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
2423 2482 3.025978 TCCGTCCCATAATGTAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
2424 2483 3.448301 TCCGTCCCATAATGTAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
2425 2484 4.081531 TCCGTCCCATAATGTAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
2426 2485 4.632688 CCGTCCCATAATGTAAGACGTTTT 59.367 41.667 9.63 0.00 46.62 2.43
2427 2486 5.122711 CCGTCCCATAATGTAAGACGTTTTT 59.877 40.000 9.63 0.00 46.62 1.94
2428 2487 6.019152 CGTCCCATAATGTAAGACGTTTTTG 58.981 40.000 0.00 0.00 43.89 2.44
2429 2488 6.128499 CGTCCCATAATGTAAGACGTTTTTGA 60.128 38.462 0.00 0.00 43.89 2.69
2430 2489 7.019418 GTCCCATAATGTAAGACGTTTTTGAC 58.981 38.462 0.00 0.00 0.00 3.18
2431 2490 6.711194 TCCCATAATGTAAGACGTTTTTGACA 59.289 34.615 0.00 0.00 0.00 3.58
2432 2491 6.799925 CCCATAATGTAAGACGTTTTTGACAC 59.200 38.462 0.00 0.00 0.00 3.67
2433 2492 7.308348 CCCATAATGTAAGACGTTTTTGACACT 60.308 37.037 0.00 0.00 0.00 3.55
2434 2493 8.714179 CCATAATGTAAGACGTTTTTGACACTA 58.286 33.333 0.00 0.00 0.00 2.74
2435 2494 9.525007 CATAATGTAAGACGTTTTTGACACTAC 57.475 33.333 0.00 0.00 0.00 2.73
2436 2495 7.542534 AATGTAAGACGTTTTTGACACTACA 57.457 32.000 0.00 0.00 0.00 2.74
2437 2496 7.724305 ATGTAAGACGTTTTTGACACTACAT 57.276 32.000 0.00 0.00 0.00 2.29
2438 2497 7.542534 TGTAAGACGTTTTTGACACTACATT 57.457 32.000 0.00 0.00 0.00 2.71
2439 2498 8.645730 TGTAAGACGTTTTTGACACTACATTA 57.354 30.769 0.00 0.00 0.00 1.90
2440 2499 8.757789 TGTAAGACGTTTTTGACACTACATTAG 58.242 33.333 0.00 0.00 0.00 1.73
2441 2500 7.781548 AAGACGTTTTTGACACTACATTAGT 57.218 32.000 0.00 0.00 40.28 2.24
2473 2532 5.515797 TGTCTTACATTATGAGACGGAGG 57.484 43.478 0.00 0.00 44.98 4.30
2474 2533 4.341235 TGTCTTACATTATGAGACGGAGGG 59.659 45.833 0.00 0.00 44.98 4.30
2475 2534 4.583489 GTCTTACATTATGAGACGGAGGGA 59.417 45.833 0.00 0.00 34.53 4.20
2533 2592 6.075918 GCTTAGCATGTGATGATATTCGTTG 58.924 40.000 0.00 0.00 30.39 4.10
2547 2606 0.535335 TCGTTGTCATGTAGGAGGGC 59.465 55.000 0.00 0.00 0.00 5.19
2599 2660 1.860950 CGCAGGTTGATGAGATAACGG 59.139 52.381 0.00 0.00 0.00 4.44
2636 2697 0.385723 GTCGGTCCTATCATCGACGC 60.386 60.000 0.00 0.00 41.60 5.19
2685 2746 5.488919 AGGAGTCATAGATGAAGAACCCAAA 59.511 40.000 0.00 0.00 38.75 3.28
2749 2810 8.425491 CAGGCAAATAAATATAACTAGTCGTCG 58.575 37.037 0.00 0.00 0.00 5.12
2778 2839 4.250464 CATTCGCACGGGGTGTATATAAT 58.750 43.478 0.00 0.00 35.75 1.28
2839 2900 5.240183 CGAGTTCATCATTATCATTTGGCCT 59.760 40.000 3.32 0.00 0.00 5.19
2846 2907 6.855763 TCATTATCATTTGGCCTTTGTCTT 57.144 33.333 3.32 0.00 0.00 3.01
2969 3030 5.296151 TCCCTTAAAGCTCACCATATCTG 57.704 43.478 0.00 0.00 0.00 2.90
2987 3048 7.255660 CCATATCTGGTAGTCTCCACTAAGAAC 60.256 44.444 0.00 0.00 36.84 3.01
2989 3050 4.765856 TCTGGTAGTCTCCACTAAGAACAC 59.234 45.833 0.00 0.00 36.84 3.32
3016 3077 2.660064 CGGCCTACCCAGCAGAACT 61.660 63.158 0.00 0.00 0.00 3.01
3025 3086 1.539827 CCCAGCAGAACTTTTTACCCG 59.460 52.381 0.00 0.00 0.00 5.28
3086 3147 5.714806 AGTCAGTCACTTTTTCCTTTTTCCA 59.285 36.000 0.00 0.00 26.56 3.53
3161 3222 0.668535 AAGCCAGAACACTTTTCCGC 59.331 50.000 0.00 0.00 0.00 5.54
3194 3255 0.301687 CGCGTGTGTGATTATGAGGC 59.698 55.000 0.00 0.00 0.00 4.70
3209 3270 6.882610 TTATGAGGCAACACCAATGATATC 57.117 37.500 0.00 0.00 43.14 1.63
3230 3291 5.886715 TCAAATGCAACTCATTTTTCACG 57.113 34.783 0.00 0.00 46.12 4.35
3238 3299 5.568482 CAACTCATTTTTCACGTGTTGAGA 58.432 37.500 26.01 15.06 36.65 3.27
3257 3318 9.605275 TGTTGAGAAGTGATTAATCTCCAATAG 57.395 33.333 16.24 0.00 39.04 1.73
3258 3319 9.606631 GTTGAGAAGTGATTAATCTCCAATAGT 57.393 33.333 16.24 0.00 39.04 2.12
3259 3320 9.605275 TTGAGAAGTGATTAATCTCCAATAGTG 57.395 33.333 16.24 0.00 39.04 2.74
3260 3321 8.762645 TGAGAAGTGATTAATCTCCAATAGTGT 58.237 33.333 16.24 0.00 39.04 3.55
3319 3403 6.968131 ATGTGTGTGCAACTTATACTACTG 57.032 37.500 0.00 0.00 38.04 2.74
3322 3406 6.157211 GTGTGTGCAACTTATACTACTGTCT 58.843 40.000 0.00 0.00 38.04 3.41
3484 3568 9.298774 CACTTAGTTTATTCTACCTTAGAACCG 57.701 37.037 0.00 0.00 46.58 4.44
3490 3574 4.877378 TTCTACCTTAGAACCGCTTTCA 57.123 40.909 0.00 0.00 39.73 2.69
3546 3630 3.396685 AGGGTAATGCCAATGCCTTTA 57.603 42.857 0.00 0.00 39.65 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 5.104024 TGGGTAAAGGTTGTAGAAGGTTTCA 60.104 40.000 0.00 0.00 0.00 2.69
99 101 6.115446 CCTTCTATGTGTGTTGTATGGATGT 58.885 40.000 0.00 0.00 0.00 3.06
116 118 4.223923 GGTGCCATGTATCTAGCCTTCTAT 59.776 45.833 0.00 0.00 0.00 1.98
117 119 3.578716 GGTGCCATGTATCTAGCCTTCTA 59.421 47.826 0.00 0.00 0.00 2.10
119 121 2.551071 GGGTGCCATGTATCTAGCCTTC 60.551 54.545 0.00 0.00 0.00 3.46
121 123 1.059913 GGGTGCCATGTATCTAGCCT 58.940 55.000 0.00 0.00 0.00 4.58
122 124 0.320771 CGGGTGCCATGTATCTAGCC 60.321 60.000 0.00 0.00 0.00 3.93
123 125 0.951040 GCGGGTGCCATGTATCTAGC 60.951 60.000 0.00 0.00 33.98 3.42
124 126 0.392706 TGCGGGTGCCATGTATCTAG 59.607 55.000 0.00 0.00 41.78 2.43
125 127 0.833949 TTGCGGGTGCCATGTATCTA 59.166 50.000 0.00 0.00 41.78 1.98
126 128 0.034574 TTTGCGGGTGCCATGTATCT 60.035 50.000 0.00 0.00 41.78 1.98
127 129 0.100503 GTTTGCGGGTGCCATGTATC 59.899 55.000 0.00 0.00 41.78 2.24
128 130 0.610509 TGTTTGCGGGTGCCATGTAT 60.611 50.000 0.00 0.00 41.78 2.29
129 131 0.823769 TTGTTTGCGGGTGCCATGTA 60.824 50.000 0.00 0.00 41.78 2.29
130 132 1.680522 TTTGTTTGCGGGTGCCATGT 61.681 50.000 0.00 0.00 41.78 3.21
131 133 0.531532 TTTTGTTTGCGGGTGCCATG 60.532 50.000 0.00 0.00 41.78 3.66
132 134 0.179000 TTTTTGTTTGCGGGTGCCAT 59.821 45.000 0.00 0.00 41.78 4.40
133 135 0.460987 CTTTTTGTTTGCGGGTGCCA 60.461 50.000 0.00 0.00 41.78 4.92
134 136 1.157257 CCTTTTTGTTTGCGGGTGCC 61.157 55.000 0.00 0.00 41.78 5.01
135 137 1.157257 CCCTTTTTGTTTGCGGGTGC 61.157 55.000 0.00 0.00 43.20 5.01
136 138 0.176910 ACCCTTTTTGTTTGCGGGTG 59.823 50.000 0.00 0.00 46.02 4.61
137 139 2.597995 ACCCTTTTTGTTTGCGGGT 58.402 47.368 0.00 0.00 43.13 5.28
138 140 1.957877 TCTACCCTTTTTGTTTGCGGG 59.042 47.619 0.00 0.00 40.79 6.13
139 141 3.934457 ATCTACCCTTTTTGTTTGCGG 57.066 42.857 0.00 0.00 0.00 5.69
140 142 5.365403 TGTATCTACCCTTTTTGTTTGCG 57.635 39.130 0.00 0.00 0.00 4.85
141 143 6.099341 CCATGTATCTACCCTTTTTGTTTGC 58.901 40.000 0.00 0.00 0.00 3.68
142 144 6.210584 ACCCATGTATCTACCCTTTTTGTTTG 59.789 38.462 0.00 0.00 0.00 2.93
143 145 6.210584 CACCCATGTATCTACCCTTTTTGTTT 59.789 38.462 0.00 0.00 0.00 2.83
144 146 5.714806 CACCCATGTATCTACCCTTTTTGTT 59.285 40.000 0.00 0.00 0.00 2.83
145 147 5.222254 ACACCCATGTATCTACCCTTTTTGT 60.222 40.000 0.00 0.00 37.26 2.83
146 148 5.261216 ACACCCATGTATCTACCCTTTTTG 58.739 41.667 0.00 0.00 37.26 2.44
147 149 5.530176 ACACCCATGTATCTACCCTTTTT 57.470 39.130 0.00 0.00 37.26 1.94
148 150 5.530176 AACACCCATGTATCTACCCTTTT 57.470 39.130 0.00 0.00 38.45 2.27
149 151 6.645884 TTAACACCCATGTATCTACCCTTT 57.354 37.500 0.00 0.00 38.45 3.11
154 156 8.395633 GTTGTTCATTAACACCCATGTATCTAC 58.604 37.037 0.00 0.00 45.18 2.59
184 186 2.781174 ACTTGGAGTGTTTTGGGGTAGA 59.219 45.455 0.00 0.00 0.00 2.59
193 195 5.663456 TCGTGTAGTTTACTTGGAGTGTTT 58.337 37.500 0.00 0.00 0.00 2.83
205 207 1.403249 GCGGCTTCCTCGTGTAGTTTA 60.403 52.381 0.00 0.00 0.00 2.01
214 216 1.355066 GACTTCAAGCGGCTTCCTCG 61.355 60.000 13.24 1.55 0.00 4.63
223 225 1.721926 GAACTCCGAAGACTTCAAGCG 59.278 52.381 15.36 3.72 0.00 4.68
235 237 1.034356 TTCACGGTTGAGAACTCCGA 58.966 50.000 9.75 0.00 46.05 4.55
299 301 1.199097 GTCGGGCAAACATTGGTGTAG 59.801 52.381 0.00 0.00 37.67 2.74
301 303 0.467290 AGTCGGGCAAACATTGGTGT 60.467 50.000 0.00 0.00 41.28 4.16
304 306 1.883021 GGAGTCGGGCAAACATTGG 59.117 57.895 0.00 0.00 0.00 3.16
305 307 0.953471 TCGGAGTCGGGCAAACATTG 60.953 55.000 0.00 0.00 36.95 2.82
306 308 0.953960 GTCGGAGTCGGGCAAACATT 60.954 55.000 0.00 0.00 36.95 2.71
307 309 1.375523 GTCGGAGTCGGGCAAACAT 60.376 57.895 0.00 0.00 36.95 2.71
308 310 2.029964 GTCGGAGTCGGGCAAACA 59.970 61.111 0.00 0.00 36.95 2.83
309 311 3.110178 CGTCGGAGTCGGGCAAAC 61.110 66.667 3.04 0.00 35.06 2.93
310 312 3.277211 CTCGTCGGAGTCGGGCAAA 62.277 63.158 3.04 0.00 39.90 3.68
311 313 3.744719 CTCGTCGGAGTCGGGCAA 61.745 66.667 3.04 0.00 39.90 4.52
314 316 4.790962 TCCCTCGTCGGAGTCGGG 62.791 72.222 0.00 0.00 39.67 5.14
315 317 3.203412 CTCCCTCGTCGGAGTCGG 61.203 72.222 11.10 0.00 43.94 4.79
322 324 2.902846 ATCGCCTCTCCCTCGTCG 60.903 66.667 0.00 0.00 0.00 5.12
323 325 1.824329 TCATCGCCTCTCCCTCGTC 60.824 63.158 0.00 0.00 0.00 4.20
324 326 2.122167 GTCATCGCCTCTCCCTCGT 61.122 63.158 0.00 0.00 0.00 4.18
325 327 1.826054 AGTCATCGCCTCTCCCTCG 60.826 63.158 0.00 0.00 0.00 4.63
326 328 1.739049 CAGTCATCGCCTCTCCCTC 59.261 63.158 0.00 0.00 0.00 4.30
327 329 2.430610 GCAGTCATCGCCTCTCCCT 61.431 63.158 0.00 0.00 0.00 4.20
328 330 2.107953 GCAGTCATCGCCTCTCCC 59.892 66.667 0.00 0.00 0.00 4.30
329 331 2.279120 CGCAGTCATCGCCTCTCC 60.279 66.667 0.00 0.00 0.00 3.71
330 332 2.279120 CCGCAGTCATCGCCTCTC 60.279 66.667 0.00 0.00 0.00 3.20
331 333 4.521062 GCCGCAGTCATCGCCTCT 62.521 66.667 0.00 0.00 0.00 3.69
337 339 3.567797 GAAGGCGCCGCAGTCATC 61.568 66.667 23.20 8.22 0.00 2.92
354 356 2.816958 ATGCACTGAAGCGAGCCG 60.817 61.111 0.00 0.00 37.31 5.52
355 357 0.740868 TACATGCACTGAAGCGAGCC 60.741 55.000 0.00 0.00 37.31 4.70
356 358 0.649475 CTACATGCACTGAAGCGAGC 59.351 55.000 0.00 0.00 37.31 5.03
357 359 1.923204 GACTACATGCACTGAAGCGAG 59.077 52.381 0.00 0.00 37.31 5.03
358 360 1.272212 TGACTACATGCACTGAAGCGA 59.728 47.619 0.00 0.00 37.31 4.93
359 361 1.713597 TGACTACATGCACTGAAGCG 58.286 50.000 0.00 0.00 37.31 4.68
360 362 2.283617 CGATGACTACATGCACTGAAGC 59.716 50.000 0.00 0.00 36.82 3.86
361 363 2.283617 GCGATGACTACATGCACTGAAG 59.716 50.000 0.00 0.00 36.82 3.02
362 364 2.094026 AGCGATGACTACATGCACTGAA 60.094 45.455 0.00 0.00 36.82 3.02
363 365 1.478105 AGCGATGACTACATGCACTGA 59.522 47.619 0.00 0.00 36.82 3.41
364 366 1.931906 AGCGATGACTACATGCACTG 58.068 50.000 0.00 0.00 36.82 3.66
365 367 2.035193 CCTAGCGATGACTACATGCACT 59.965 50.000 0.00 0.00 36.82 4.40
367 369 2.031870 ACCTAGCGATGACTACATGCA 58.968 47.619 0.00 0.00 36.82 3.96
368 370 2.398498 CACCTAGCGATGACTACATGC 58.602 52.381 0.00 0.00 36.82 4.06
369 371 2.362397 ACCACCTAGCGATGACTACATG 59.638 50.000 0.00 0.00 36.82 3.21
370 372 2.667470 ACCACCTAGCGATGACTACAT 58.333 47.619 0.00 0.00 39.67 2.29
371 373 2.139323 ACCACCTAGCGATGACTACA 57.861 50.000 0.00 0.00 0.00 2.74
373 375 4.891168 TCATAAACCACCTAGCGATGACTA 59.109 41.667 0.00 0.00 0.00 2.59
374 376 3.704566 TCATAAACCACCTAGCGATGACT 59.295 43.478 0.00 0.00 0.00 3.41
375 377 4.054780 TCATAAACCACCTAGCGATGAC 57.945 45.455 0.00 0.00 0.00 3.06
376 378 4.439057 GTTCATAAACCACCTAGCGATGA 58.561 43.478 0.00 0.00 0.00 2.92
377 379 4.795970 GTTCATAAACCACCTAGCGATG 57.204 45.455 0.00 0.00 0.00 3.84
389 391 9.353999 GTCAAATTTACATCCAGGTTCATAAAC 57.646 33.333 0.00 0.00 34.46 2.01
390 392 9.308000 AGTCAAATTTACATCCAGGTTCATAAA 57.692 29.630 0.00 0.00 0.00 1.40
391 393 8.877864 AGTCAAATTTACATCCAGGTTCATAA 57.122 30.769 0.00 0.00 0.00 1.90
392 394 8.877864 AAGTCAAATTTACATCCAGGTTCATA 57.122 30.769 0.00 0.00 0.00 2.15
393 395 7.671398 AGAAGTCAAATTTACATCCAGGTTCAT 59.329 33.333 0.00 0.00 0.00 2.57
394 396 7.004086 AGAAGTCAAATTTACATCCAGGTTCA 58.996 34.615 0.00 0.00 0.00 3.18
395 397 7.454260 AGAAGTCAAATTTACATCCAGGTTC 57.546 36.000 0.00 0.00 0.00 3.62
396 398 8.164070 ACTAGAAGTCAAATTTACATCCAGGTT 58.836 33.333 0.00 0.00 0.00 3.50
397 399 7.607991 CACTAGAAGTCAAATTTACATCCAGGT 59.392 37.037 0.00 0.00 0.00 4.00
398 400 7.607991 ACACTAGAAGTCAAATTTACATCCAGG 59.392 37.037 0.00 0.00 0.00 4.45
399 401 8.553459 ACACTAGAAGTCAAATTTACATCCAG 57.447 34.615 0.00 0.00 0.00 3.86
400 402 8.918202 AACACTAGAAGTCAAATTTACATCCA 57.082 30.769 0.00 0.00 0.00 3.41
401 403 9.220767 AGAACACTAGAAGTCAAATTTACATCC 57.779 33.333 0.00 0.00 0.00 3.51
411 413 9.485206 GGTAATACAAAGAACACTAGAAGTCAA 57.515 33.333 0.00 0.00 0.00 3.18
412 414 8.867097 AGGTAATACAAAGAACACTAGAAGTCA 58.133 33.333 0.00 0.00 0.00 3.41
413 415 9.708092 AAGGTAATACAAAGAACACTAGAAGTC 57.292 33.333 0.00 0.00 0.00 3.01
414 416 9.490379 CAAGGTAATACAAAGAACACTAGAAGT 57.510 33.333 0.00 0.00 0.00 3.01
415 417 9.706691 TCAAGGTAATACAAAGAACACTAGAAG 57.293 33.333 0.00 0.00 0.00 2.85
416 418 9.485206 GTCAAGGTAATACAAAGAACACTAGAA 57.515 33.333 0.00 0.00 0.00 2.10
417 419 8.644216 TGTCAAGGTAATACAAAGAACACTAGA 58.356 33.333 0.00 0.00 0.00 2.43
418 420 8.827177 TGTCAAGGTAATACAAAGAACACTAG 57.173 34.615 0.00 0.00 0.00 2.57
419 421 8.644216 TCTGTCAAGGTAATACAAAGAACACTA 58.356 33.333 0.00 0.00 0.00 2.74
420 422 7.506114 TCTGTCAAGGTAATACAAAGAACACT 58.494 34.615 0.00 0.00 0.00 3.55
421 423 7.724305 TCTGTCAAGGTAATACAAAGAACAC 57.276 36.000 0.00 0.00 0.00 3.32
422 424 7.936847 ACATCTGTCAAGGTAATACAAAGAACA 59.063 33.333 0.00 0.00 0.00 3.18
423 425 8.324163 ACATCTGTCAAGGTAATACAAAGAAC 57.676 34.615 0.00 0.00 0.00 3.01
424 426 8.783093 CAACATCTGTCAAGGTAATACAAAGAA 58.217 33.333 0.00 0.00 0.00 2.52
425 427 8.154203 TCAACATCTGTCAAGGTAATACAAAGA 58.846 33.333 0.00 0.00 0.00 2.52
426 428 8.322906 TCAACATCTGTCAAGGTAATACAAAG 57.677 34.615 0.00 0.00 0.00 2.77
427 429 8.684386 TTCAACATCTGTCAAGGTAATACAAA 57.316 30.769 0.00 0.00 0.00 2.83
428 430 8.862325 ATTCAACATCTGTCAAGGTAATACAA 57.138 30.769 0.00 0.00 0.00 2.41
429 431 9.599866 CTATTCAACATCTGTCAAGGTAATACA 57.400 33.333 0.00 0.00 0.00 2.29
430 432 9.817809 TCTATTCAACATCTGTCAAGGTAATAC 57.182 33.333 0.00 0.00 0.00 1.89
432 434 9.553064 GATCTATTCAACATCTGTCAAGGTAAT 57.447 33.333 0.00 0.00 0.00 1.89
433 435 7.706607 CGATCTATTCAACATCTGTCAAGGTAA 59.293 37.037 0.00 0.00 0.00 2.85
434 436 7.203218 CGATCTATTCAACATCTGTCAAGGTA 58.797 38.462 0.00 0.00 0.00 3.08
435 437 6.045318 CGATCTATTCAACATCTGTCAAGGT 58.955 40.000 0.00 0.00 0.00 3.50
436 438 5.464722 CCGATCTATTCAACATCTGTCAAGG 59.535 44.000 0.00 0.00 0.00 3.61
437 439 6.276091 TCCGATCTATTCAACATCTGTCAAG 58.724 40.000 0.00 0.00 0.00 3.02
438 440 6.220726 TCCGATCTATTCAACATCTGTCAA 57.779 37.500 0.00 0.00 0.00 3.18
439 441 5.852282 TCCGATCTATTCAACATCTGTCA 57.148 39.130 0.00 0.00 0.00 3.58
440 442 6.276847 ACTTCCGATCTATTCAACATCTGTC 58.723 40.000 0.00 0.00 0.00 3.51
441 443 6.227298 ACTTCCGATCTATTCAACATCTGT 57.773 37.500 0.00 0.00 0.00 3.41
442 444 7.545362 AAACTTCCGATCTATTCAACATCTG 57.455 36.000 0.00 0.00 0.00 2.90
443 445 8.043710 AGAAAACTTCCGATCTATTCAACATCT 58.956 33.333 0.00 0.00 0.00 2.90
444 446 8.202745 AGAAAACTTCCGATCTATTCAACATC 57.797 34.615 0.00 0.00 0.00 3.06
445 447 7.010552 CGAGAAAACTTCCGATCTATTCAACAT 59.989 37.037 0.00 0.00 0.00 2.71
446 448 6.310467 CGAGAAAACTTCCGATCTATTCAACA 59.690 38.462 0.00 0.00 0.00 3.33
447 449 6.697152 CGAGAAAACTTCCGATCTATTCAAC 58.303 40.000 0.00 0.00 0.00 3.18
448 450 5.291128 GCGAGAAAACTTCCGATCTATTCAA 59.709 40.000 0.00 0.00 0.00 2.69
449 451 4.804139 GCGAGAAAACTTCCGATCTATTCA 59.196 41.667 0.00 0.00 0.00 2.57
450 452 4.804139 TGCGAGAAAACTTCCGATCTATTC 59.196 41.667 0.00 0.00 0.00 1.75
451 453 4.755411 TGCGAGAAAACTTCCGATCTATT 58.245 39.130 0.00 0.00 0.00 1.73
452 454 4.386867 TGCGAGAAAACTTCCGATCTAT 57.613 40.909 0.00 0.00 0.00 1.98
453 455 3.861276 TGCGAGAAAACTTCCGATCTA 57.139 42.857 0.00 0.00 0.00 1.98
454 456 2.743636 TGCGAGAAAACTTCCGATCT 57.256 45.000 0.00 0.00 0.00 2.75
455 457 3.806316 TTTGCGAGAAAACTTCCGATC 57.194 42.857 0.00 0.00 0.00 3.69
456 458 4.561735 TTTTTGCGAGAAAACTTCCGAT 57.438 36.364 0.00 0.00 0.00 4.18
476 478 4.944249 GCTTTCGCGCCTCTTTTT 57.056 50.000 0.00 0.00 0.00 1.94
547 549 1.467734 TCGCAGTTACTCTTCGTCCTC 59.532 52.381 0.00 0.00 34.66 3.71
620 622 0.178861 TCCAAAGGCCTCTCCCTCTT 60.179 55.000 5.23 0.00 32.93 2.85
645 647 2.749621 CACCTCTGTGCCAGAAAATACC 59.250 50.000 6.39 0.00 40.18 2.73
774 777 2.554806 TACATAGAGACACGCGGTTG 57.445 50.000 12.47 2.37 0.00 3.77
822 826 6.498304 GTGAAAGTGACAATCAGTTCACATT 58.502 36.000 20.29 0.00 44.21 2.71
828 832 5.123186 TCAAACGTGAAAGTGACAATCAGTT 59.877 36.000 0.00 0.00 41.46 3.16
882 886 4.541973 TCTTCTGCAGAGTTATGCTCAA 57.458 40.909 17.43 0.00 46.63 3.02
889 893 4.273480 GTGTTGCTTTCTTCTGCAGAGTTA 59.727 41.667 17.43 0.89 40.46 2.24
936 940 3.870274 ACTCTTTATGGGTTTCTACGGC 58.130 45.455 0.00 0.00 0.00 5.68
1055 1060 1.757118 TCCTTCGATGCCGAGAAATCT 59.243 47.619 0.00 0.00 46.39 2.40
1110 1115 3.094572 CCAGAACTTCATGGCAAGGATT 58.905 45.455 0.00 0.00 0.00 3.01
1268 1273 7.179160 AGGGAGATTTCCTCTTGGTAAATTTTG 59.821 37.037 1.74 0.00 43.49 2.44
1276 1281 3.137360 GCATAGGGAGATTTCCTCTTGGT 59.863 47.826 1.74 0.00 43.49 3.67
1284 1289 3.297134 TGTTGGGCATAGGGAGATTTC 57.703 47.619 0.00 0.00 0.00 2.17
1330 1335 0.089516 CGAAACGCGTGTAACCGTAC 59.910 55.000 14.98 0.00 41.56 3.67
1343 1348 2.984471 TGAGAAGGAAATCGACGAAACG 59.016 45.455 0.00 0.00 0.00 3.60
1381 1390 1.280457 GGTCACCCTGAGAGAACCAT 58.720 55.000 0.00 0.00 0.00 3.55
1439 1448 7.200434 ACCTTCCAATGCTCTTATCTTTCTA 57.800 36.000 0.00 0.00 0.00 2.10
1495 1505 5.979517 CACGCTAAGATCAACAGATGACATA 59.020 40.000 0.00 0.00 41.93 2.29
1500 1510 2.931969 TGCACGCTAAGATCAACAGATG 59.068 45.455 0.00 0.00 0.00 2.90
1507 1517 4.877823 AGATGAAAATGCACGCTAAGATCA 59.122 37.500 0.00 0.00 0.00 2.92
1553 1565 7.441157 TCCACCTTATCTACAAATGCGATTTAG 59.559 37.037 0.00 0.00 0.00 1.85
1664 1676 0.695924 TGAGGCCTTCATTTTCGGGA 59.304 50.000 6.77 0.00 0.00 5.14
1778 1790 6.637658 GCCAAAACGTGCAAGTAATAAACTAA 59.362 34.615 5.50 0.00 37.50 2.24
1868 1880 3.375299 CCATGACCTAGTTAAGCAACAGC 59.625 47.826 0.00 0.00 37.10 4.40
1869 1881 4.393062 CACCATGACCTAGTTAAGCAACAG 59.607 45.833 0.00 0.00 37.10 3.16
1914 1926 4.292186 ACTTGCGGATATAGCATGGAAT 57.708 40.909 17.14 1.36 44.74 3.01
1957 1969 4.423625 ACATGCTTGTCCCTATAACTCC 57.576 45.455 0.00 0.00 0.00 3.85
2101 2151 9.681692 GCATTTGCAGATAATATTTGTACATGA 57.318 29.630 10.54 0.00 41.59 3.07
2108 2158 9.622004 CCTCTAAGCATTTGCAGATAATATTTG 57.378 33.333 5.20 0.00 45.16 2.32
2113 2163 7.886629 TTTCCTCTAAGCATTTGCAGATAAT 57.113 32.000 5.20 0.00 45.16 1.28
2129 2179 8.772250 AGTCAATATGATTGGACTTTTCCTCTA 58.228 33.333 0.00 0.00 43.31 2.43
2132 2182 7.671398 ACAAGTCAATATGATTGGACTTTTCCT 59.329 33.333 0.00 0.00 45.52 3.36
2140 2190 4.096833 GCTGCACAAGTCAATATGATTGGA 59.903 41.667 0.00 0.00 0.00 3.53
2149 2199 1.755959 TGGTTTGCTGCACAAGTCAAT 59.244 42.857 0.00 0.00 40.06 2.57
2152 2203 1.843992 CTTGGTTTGCTGCACAAGTC 58.156 50.000 18.19 6.93 40.06 3.01
2163 2214 0.389025 GGGGCACTCAACTTGGTTTG 59.611 55.000 0.00 0.00 0.00 2.93
2167 2218 0.540365 ACATGGGGCACTCAACTTGG 60.540 55.000 0.00 0.00 0.00 3.61
2185 2236 6.554334 TTCAGTGGTCTACAAATGCTAAAC 57.446 37.500 0.00 0.00 0.00 2.01
2189 2240 5.171339 AGATTCAGTGGTCTACAAATGCT 57.829 39.130 0.00 0.00 0.00 3.79
2220 2271 1.404477 CACAATTTTGTTCGTCGGCC 58.596 50.000 0.00 0.00 39.91 6.13
2222 2273 2.043411 CTGCACAATTTTGTTCGTCGG 58.957 47.619 0.00 0.00 39.91 4.79
2225 2276 3.545873 CGAAACTGCACAATTTTGTTCGT 59.454 39.130 6.82 0.00 39.91 3.85
2226 2277 3.599116 GCGAAACTGCACAATTTTGTTCG 60.599 43.478 9.47 9.47 39.91 3.95
2227 2278 3.599116 CGCGAAACTGCACAATTTTGTTC 60.599 43.478 0.00 0.00 39.91 3.18
2239 2292 2.116366 ACAATTTTCACGCGAAACTGC 58.884 42.857 15.93 0.00 40.84 4.40
2263 2316 4.908601 TCCATGTAGTGTTCAAGGATGT 57.091 40.909 0.00 0.00 29.50 3.06
2266 2319 6.156083 TCACATATCCATGTAGTGTTCAAGGA 59.844 38.462 0.00 0.00 43.73 3.36
2268 2322 7.848223 TTCACATATCCATGTAGTGTTCAAG 57.152 36.000 0.00 0.00 43.73 3.02
2272 2326 9.241919 TGATTTTTCACATATCCATGTAGTGTT 57.758 29.630 0.00 0.00 43.73 3.32
2323 2378 8.362639 AGCAAATGAACAGTAAATTCAGAATGT 58.637 29.630 0.00 0.00 39.36 2.71
2351 2406 1.606668 GCATGACGTTTTGGTTCTCCA 59.393 47.619 0.00 0.00 42.66 3.86
2357 2412 6.811253 TCTAATTTAGCATGACGTTTTGGT 57.189 33.333 0.00 8.20 0.00 3.67
2359 2414 6.197096 GCCATCTAATTTAGCATGACGTTTTG 59.803 38.462 0.00 0.00 0.00 2.44
2390 2449 0.690077 GGGACGGAGGGAGTACCAAT 60.690 60.000 0.00 0.00 42.20 3.16
2392 2451 2.361771 GGGACGGAGGGAGTACCA 59.638 66.667 0.00 0.00 42.20 3.25
2394 2453 2.077687 TTATGGGACGGAGGGAGTAC 57.922 55.000 0.00 0.00 0.00 2.73
2395 2454 2.090943 ACATTATGGGACGGAGGGAGTA 60.091 50.000 0.00 0.00 0.00 2.59
2397 2456 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
2399 2458 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
2400 2459 3.552273 CGTCTTACATTATGGGACGGAGG 60.552 52.174 20.50 5.87 43.69 4.30
2401 2460 3.639538 CGTCTTACATTATGGGACGGAG 58.360 50.000 20.50 2.74 43.69 4.63
2402 2461 3.720949 CGTCTTACATTATGGGACGGA 57.279 47.619 20.50 2.30 43.69 4.69
2405 2464 7.019418 GTCAAAAACGTCTTACATTATGGGAC 58.981 38.462 0.00 1.75 0.00 4.46
2406 2465 6.711194 TGTCAAAAACGTCTTACATTATGGGA 59.289 34.615 0.00 0.00 0.00 4.37
2407 2466 6.799925 GTGTCAAAAACGTCTTACATTATGGG 59.200 38.462 0.00 0.00 0.00 4.00
2408 2467 7.581476 AGTGTCAAAAACGTCTTACATTATGG 58.419 34.615 0.00 0.00 0.00 2.74
2409 2468 9.525007 GTAGTGTCAAAAACGTCTTACATTATG 57.475 33.333 0.00 0.00 0.00 1.90
2410 2469 9.263538 TGTAGTGTCAAAAACGTCTTACATTAT 57.736 29.630 0.00 0.00 0.00 1.28
2411 2470 8.645730 TGTAGTGTCAAAAACGTCTTACATTA 57.354 30.769 0.00 0.00 0.00 1.90
2412 2471 7.542534 TGTAGTGTCAAAAACGTCTTACATT 57.457 32.000 0.00 0.00 0.00 2.71
2413 2472 7.724305 ATGTAGTGTCAAAAACGTCTTACAT 57.276 32.000 0.00 0.00 0.00 2.29
2414 2473 7.542534 AATGTAGTGTCAAAAACGTCTTACA 57.457 32.000 0.00 0.00 0.00 2.41
2415 2474 8.758715 ACTAATGTAGTGTCAAAAACGTCTTAC 58.241 33.333 0.00 0.00 37.69 2.34
2416 2475 8.876275 ACTAATGTAGTGTCAAAAACGTCTTA 57.124 30.769 0.00 0.00 37.69 2.10
2417 2476 7.781548 ACTAATGTAGTGTCAAAAACGTCTT 57.218 32.000 0.00 0.00 37.69 3.01
2446 2505 8.786826 TCCGTCTCATAATGTAAGACATTTTT 57.213 30.769 9.92 0.00 45.80 1.94
2447 2506 7.495934 CCTCCGTCTCATAATGTAAGACATTTT 59.504 37.037 9.92 0.33 45.80 1.82
2448 2507 6.986817 CCTCCGTCTCATAATGTAAGACATTT 59.013 38.462 9.92 0.00 45.80 2.32
2450 2509 5.011125 CCCTCCGTCTCATAATGTAAGACAT 59.989 44.000 0.00 0.00 41.31 3.06
2451 2510 4.341235 CCCTCCGTCTCATAATGTAAGACA 59.659 45.833 0.00 0.00 39.49 3.41
2452 2511 4.583489 TCCCTCCGTCTCATAATGTAAGAC 59.417 45.833 0.00 0.00 36.82 3.01
2453 2512 4.800023 TCCCTCCGTCTCATAATGTAAGA 58.200 43.478 0.00 0.00 0.00 2.10
2454 2513 4.585162 ACTCCCTCCGTCTCATAATGTAAG 59.415 45.833 0.00 0.00 0.00 2.34
2455 2514 4.543689 ACTCCCTCCGTCTCATAATGTAA 58.456 43.478 0.00 0.00 0.00 2.41
2456 2515 4.180377 ACTCCCTCCGTCTCATAATGTA 57.820 45.455 0.00 0.00 0.00 2.29
2457 2516 3.033659 ACTCCCTCCGTCTCATAATGT 57.966 47.619 0.00 0.00 0.00 2.71
2458 2517 4.145807 ACTACTCCCTCCGTCTCATAATG 58.854 47.826 0.00 0.00 0.00 1.90
2459 2518 4.456662 ACTACTCCCTCCGTCTCATAAT 57.543 45.455 0.00 0.00 0.00 1.28
2460 2519 3.947612 ACTACTCCCTCCGTCTCATAA 57.052 47.619 0.00 0.00 0.00 1.90
2461 2520 3.713248 TGTACTACTCCCTCCGTCTCATA 59.287 47.826 0.00 0.00 0.00 2.15
2462 2521 2.508716 TGTACTACTCCCTCCGTCTCAT 59.491 50.000 0.00 0.00 0.00 2.90
2463 2522 1.911357 TGTACTACTCCCTCCGTCTCA 59.089 52.381 0.00 0.00 0.00 3.27
2464 2523 2.093021 AGTGTACTACTCCCTCCGTCTC 60.093 54.545 0.00 0.00 33.17 3.36
2465 2524 1.914798 AGTGTACTACTCCCTCCGTCT 59.085 52.381 0.00 0.00 33.17 4.18
2466 2525 2.015587 CAGTGTACTACTCCCTCCGTC 58.984 57.143 0.00 0.00 37.60 4.79
2467 2526 1.632409 TCAGTGTACTACTCCCTCCGT 59.368 52.381 0.00 0.00 37.60 4.69
2468 2527 2.290464 CTCAGTGTACTACTCCCTCCG 58.710 57.143 0.00 0.00 37.60 4.63
2469 2528 2.025898 GCTCAGTGTACTACTCCCTCC 58.974 57.143 0.00 0.00 37.60 4.30
2470 2529 2.724454 TGCTCAGTGTACTACTCCCTC 58.276 52.381 0.00 0.00 37.60 4.30
2471 2530 2.826725 GTTGCTCAGTGTACTACTCCCT 59.173 50.000 0.00 0.00 37.60 4.20
2472 2531 2.561419 TGTTGCTCAGTGTACTACTCCC 59.439 50.000 0.00 0.00 37.60 4.30
2473 2532 3.936372 TGTTGCTCAGTGTACTACTCC 57.064 47.619 0.00 0.00 37.60 3.85
2474 2533 4.623167 CACATGTTGCTCAGTGTACTACTC 59.377 45.833 0.00 0.00 37.60 2.59
2475 2534 4.560128 CACATGTTGCTCAGTGTACTACT 58.440 43.478 0.00 0.00 41.36 2.57
2533 2592 4.973168 TCATTTATGCCCTCCTACATGAC 58.027 43.478 0.00 0.00 0.00 3.06
2599 2660 0.613777 ACCACGGAATCCACCTCTTC 59.386 55.000 0.00 0.00 0.00 2.87
2636 2697 1.135915 CTCCACTCTCCTTCATGACCG 59.864 57.143 0.00 0.00 0.00 4.79
2685 2746 7.881232 TCTTATATGTTGTCCGTTTCTTTCCTT 59.119 33.333 0.00 0.00 0.00 3.36
2796 2857 6.466885 ACTCGAGCTGTTACTGGTTATTAT 57.533 37.500 13.61 0.00 0.00 1.28
2797 2858 5.909621 ACTCGAGCTGTTACTGGTTATTA 57.090 39.130 13.61 0.00 0.00 0.98
2939 3000 4.939439 GGTGAGCTTTAAGGGATACGAAAA 59.061 41.667 0.00 0.00 37.60 2.29
2969 3030 4.765856 TCAGTGTTCTTAGTGGAGACTACC 59.234 45.833 0.00 0.00 34.23 3.18
2976 3037 4.500887 CGTTCCTTCAGTGTTCTTAGTGGA 60.501 45.833 0.00 0.00 0.00 4.02
2987 3048 0.391263 GGTAGGCCGTTCCTTCAGTG 60.391 60.000 0.00 0.00 44.75 3.66
2989 3050 1.221021 GGGTAGGCCGTTCCTTCAG 59.779 63.158 12.25 0.00 44.75 3.02
3039 3100 7.445121 ACTAGAGAAAACATTCATGTGACTGA 58.555 34.615 7.27 0.00 41.61 3.41
3040 3101 7.386025 TGACTAGAGAAAACATTCATGTGACTG 59.614 37.037 0.00 0.00 41.61 3.51
3041 3102 7.445121 TGACTAGAGAAAACATTCATGTGACT 58.555 34.615 0.00 0.00 41.61 3.41
3042 3103 7.386299 ACTGACTAGAGAAAACATTCATGTGAC 59.614 37.037 0.00 0.00 41.61 3.67
3194 3255 6.814644 AGTTGCATTTGATATCATTGGTGTTG 59.185 34.615 6.17 0.00 0.00 3.33
3230 3291 7.672983 TTGGAGATTAATCACTTCTCAACAC 57.327 36.000 17.56 0.00 38.08 3.32
3593 3677 1.474143 GCCATTGCCTCTGGACTACTC 60.474 57.143 0.78 0.00 35.70 2.59
3630 3714 7.306167 GGCAAAAATGTCATATATTTCAGTGCG 60.306 37.037 0.00 0.00 34.24 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.