Multiple sequence alignment - TraesCS2B01G336900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G336900 chr2B 100.000 8455 0 0 1 8455 481117783 481126237 0.000000e+00 15614.0
1 TraesCS2B01G336900 chr2B 79.115 407 67 10 4958 5348 715091813 715091409 1.810000e-66 265.0
2 TraesCS2B01G336900 chr2B 71.975 653 146 22 7805 8448 205696939 205696315 3.160000e-34 158.0
3 TraesCS2B01G336900 chr2B 76.503 183 30 10 13 190 77201506 77201680 4.200000e-13 87.9
4 TraesCS2B01G336900 chr2B 97.059 34 0 1 2138 2171 654322779 654322811 1.000000e-03 56.5
5 TraesCS2B01G336900 chr2A 90.384 5439 433 50 811 6185 543714767 543720179 0.000000e+00 7064.0
6 TraesCS2B01G336900 chr2A 89.728 1655 141 15 6813 8455 543741153 543742790 0.000000e+00 2087.0
7 TraesCS2B01G336900 chr2A 80.431 1114 205 13 2611 3716 30338283 30337175 0.000000e+00 837.0
8 TraesCS2B01G336900 chr2A 88.810 420 44 2 6353 6772 543740734 543741150 5.850000e-141 512.0
9 TraesCS2B01G336900 chr2A 80.665 331 42 8 4959 5271 523846112 523845786 3.940000e-58 237.0
10 TraesCS2B01G336900 chr2A 91.525 177 5 2 6180 6354 543721651 543721819 1.420000e-57 235.0
11 TraesCS2B01G336900 chr2A 90.370 135 12 1 5214 5348 590189239 590189106 8.720000e-40 176.0
12 TraesCS2B01G336900 chr2A 92.537 67 5 0 5348 5414 4041294 4041360 6.990000e-16 97.1
13 TraesCS2B01G336900 chr2A 90.698 43 1 2 534 574 543711863 543711904 4.000000e-03 54.7
14 TraesCS2B01G336900 chr2D 89.241 2742 203 42 328 3002 405599690 405602406 0.000000e+00 3345.0
15 TraesCS2B01G336900 chr2D 85.290 1618 152 30 4726 6297 405604983 405606560 0.000000e+00 1591.0
16 TraesCS2B01G336900 chr2D 85.316 1471 198 13 3233 4692 405603517 405604980 0.000000e+00 1504.0
17 TraesCS2B01G336900 chr2D 88.185 1168 131 6 6374 7538 405606920 405608083 0.000000e+00 1386.0
18 TraesCS2B01G336900 chr2D 94.891 274 12 1 13 286 405599417 405599688 2.180000e-115 427.0
19 TraesCS2B01G336900 chr2D 82.169 415 51 11 4955 5348 606952815 606953227 1.360000e-87 335.0
20 TraesCS2B01G336900 chr2D 83.412 211 32 3 7549 7756 398672932 398672722 8.660000e-45 193.0
21 TraesCS2B01G336900 chr2D 91.241 137 11 1 5212 5348 446524861 446524726 1.450000e-42 185.0
22 TraesCS2B01G336900 chr2D 88.489 139 15 1 5211 5349 446595758 446595621 5.250000e-37 167.0
23 TraesCS2B01G336900 chr2D 90.984 122 11 0 7770 7891 405608999 405609120 1.890000e-36 165.0
24 TraesCS2B01G336900 chr4A 80.963 1308 198 35 2421 3700 503609114 503610398 0.000000e+00 989.0
25 TraesCS2B01G336900 chr4A 80.757 1242 216 18 2494 3719 36346347 36345113 0.000000e+00 948.0
26 TraesCS2B01G336900 chr4A 80.094 638 103 15 2140 2756 24941066 24941700 3.600000e-123 453.0
27 TraesCS2B01G336900 chr4A 85.000 180 21 5 7541 7717 608222692 608222868 2.430000e-40 178.0
28 TraesCS2B01G336900 chr4A 81.250 224 32 4 7557 7772 475900711 475900932 1.130000e-38 172.0
29 TraesCS2B01G336900 chr4A 78.125 288 41 8 19 287 139023269 139023553 6.790000e-36 163.0
30 TraesCS2B01G336900 chr4A 78.125 256 36 11 100 337 114808570 114808317 2.460000e-30 145.0
31 TraesCS2B01G336900 chr4A 81.197 117 19 2 461 574 25796555 25796671 3.250000e-14 91.6
32 TraesCS2B01G336900 chr4A 100.000 29 0 0 611 639 722681410 722681438 4.000000e-03 54.7
33 TraesCS2B01G336900 chr7D 76.797 1892 350 52 2142 3983 638332033 638333885 0.000000e+00 979.0
34 TraesCS2B01G336900 chr7D 79.376 417 57 11 4956 5345 582310013 582310427 5.030000e-67 267.0
35 TraesCS2B01G336900 chr7D 78.016 373 66 6 4979 5337 167507838 167508208 3.970000e-53 220.0
36 TraesCS2B01G336900 chr7D 75.576 217 48 2 3982 4198 169547345 169547134 1.500000e-17 102.0
37 TraesCS2B01G336900 chr7B 78.502 1549 261 37 2203 3716 734378371 734376860 0.000000e+00 950.0
38 TraesCS2B01G336900 chr7B 87.143 140 14 4 5211 5349 233419716 233419852 1.140000e-33 156.0
39 TraesCS2B01G336900 chr5D 79.879 1317 238 20 2421 3716 497817258 497818568 0.000000e+00 939.0
40 TraesCS2B01G336900 chr5D 80.749 187 27 5 103 282 44153938 44154122 4.120000e-28 137.0
41 TraesCS2B01G336900 chr5D 74.180 244 60 3 332 574 446254617 446254376 1.940000e-16 99.0
42 TraesCS2B01G336900 chr5D 100.000 29 0 0 611 639 302514459 302514431 4.000000e-03 54.7
43 TraesCS2B01G336900 chr3A 79.743 1323 234 23 2421 3714 620622133 620620816 0.000000e+00 928.0
44 TraesCS2B01G336900 chr3A 85.153 229 29 5 4957 5182 50939569 50939343 6.600000e-56 230.0
45 TraesCS2B01G336900 chr3A 76.734 447 58 13 5013 5417 627792173 627791731 3.090000e-49 207.0
46 TraesCS2B01G336900 chr3A 73.006 652 141 24 7805 8448 272915840 272915216 6.700000e-46 196.0
47 TraesCS2B01G336900 chr3A 76.351 148 29 5 4039 4182 670823564 670823709 3.270000e-09 75.0
48 TraesCS2B01G336900 chr4D 79.744 1328 230 28 2421 3722 68629077 68627763 0.000000e+00 926.0
49 TraesCS2B01G336900 chr4D 80.978 368 49 8 4960 5308 299463853 299463488 1.080000e-68 272.0
50 TraesCS2B01G336900 chr4D 71.692 650 136 29 7805 8448 140050991 140051598 4.120000e-28 137.0
51 TraesCS2B01G336900 chr4D 80.000 110 22 0 4073 4182 467433903 467434012 1.960000e-11 82.4
52 TraesCS2B01G336900 chr4D 86.538 52 7 0 4143 4194 497888878 497888827 3.300000e-04 58.4
53 TraesCS2B01G336900 chr7A 75.624 2084 385 62 2145 4176 727721046 727719034 0.000000e+00 920.0
54 TraesCS2B01G336900 chr7A 78.810 420 59 12 4956 5348 674282031 674282447 1.090000e-63 255.0
55 TraesCS2B01G336900 chr7A 78.322 143 30 1 372 513 16615933 16615791 3.250000e-14 91.6
56 TraesCS2B01G336900 chr7A 96.875 32 1 0 4143 4174 518552407 518552438 4.000000e-03 54.7
57 TraesCS2B01G336900 chr6D 77.406 1642 310 39 2479 4075 418048699 418047074 0.000000e+00 920.0
58 TraesCS2B01G336900 chr6D 82.474 194 28 3 100 287 267915952 267916145 1.890000e-36 165.0
59 TraesCS2B01G336900 chr4B 81.058 1172 198 14 2479 3629 128018732 128019900 0.000000e+00 913.0
60 TraesCS2B01G336900 chr4B 80.344 407 58 9 4961 5348 372359558 372359155 1.070000e-73 289.0
61 TraesCS2B01G336900 chr4B 85.000 240 29 7 7539 7776 15763949 15764183 3.940000e-58 237.0
62 TraesCS2B01G336900 chr4B 82.000 250 29 10 7535 7772 66818235 66818480 1.860000e-46 198.0
63 TraesCS2B01G336900 chr4B 71.822 653 147 25 7805 8448 412649081 412648457 1.470000e-32 152.0
64 TraesCS2B01G336900 chr4B 91.549 71 5 1 5348 5418 372359134 372359065 6.990000e-16 97.1
65 TraesCS2B01G336900 chr5A 80.892 1031 162 21 2146 3155 510076158 510075142 0.000000e+00 780.0
66 TraesCS2B01G336900 chr5A 72.588 653 139 29 7805 8448 411752145 411752766 2.430000e-40 178.0
67 TraesCS2B01G336900 chr5A 81.938 227 18 4 5212 5417 494282020 494282244 4.060000e-38 171.0
68 TraesCS2B01G336900 chr5A 71.855 469 110 17 7804 8265 228905237 228905690 1.930000e-21 115.0
69 TraesCS2B01G336900 chr5A 86.250 80 11 0 609 688 392583707 392583786 4.200000e-13 87.9
70 TraesCS2B01G336900 chr5A 80.000 120 19 5 372 488 40926034 40925917 5.440000e-12 84.2
71 TraesCS2B01G336900 chr3B 79.950 793 122 15 2421 3206 675152734 675153496 4.460000e-152 549.0
72 TraesCS2B01G336900 chr3B 83.130 409 46 8 4958 5347 660038651 660039055 1.350000e-92 351.0
73 TraesCS2B01G336900 chr3B 79.419 413 61 14 4958 5348 790755368 790755778 3.890000e-68 270.0
74 TraesCS2B01G336900 chr3B 83.824 204 26 7 7516 7717 53557641 53557443 4.030000e-43 187.0
75 TraesCS2B01G336900 chr3B 84.946 186 21 3 7594 7772 815467200 815467015 1.870000e-41 182.0
76 TraesCS2B01G336900 chr3B 75.312 320 37 23 28 332 749647139 749646847 1.930000e-21 115.0
77 TraesCS2B01G336900 chr3B 78.022 182 34 3 100 275 258979704 258979523 8.970000e-20 110.0
78 TraesCS2B01G336900 chr3B 78.947 114 22 2 371 483 166508092 166507980 9.100000e-10 76.8
79 TraesCS2B01G336900 chr3B 100.000 31 0 0 609 639 650344762 650344732 3.300000e-04 58.4
80 TraesCS2B01G336900 chr3B 73.585 159 38 4 372 527 764240978 764241135 3.300000e-04 58.4
81 TraesCS2B01G336900 chr3B 94.286 35 1 1 611 645 761920370 761920337 1.500000e-02 52.8
82 TraesCS2B01G336900 chrUn 78.866 776 129 26 2138 2891 16506020 16506782 7.630000e-135 492.0
83 TraesCS2B01G336900 chrUn 83.117 77 13 0 619 695 156524219 156524295 4.230000e-08 71.3
84 TraesCS2B01G336900 chrUn 94.595 37 2 0 7794 7830 89186429 89186393 3.300000e-04 58.4
85 TraesCS2B01G336900 chrUn 100.000 29 0 0 611 639 305213236 305213208 4.000000e-03 54.7
86 TraesCS2B01G336900 chr1A 79.908 433 81 6 2137 2566 131283763 131284192 6.370000e-81 313.0
87 TraesCS2B01G336900 chr1A 73.201 653 138 23 7805 8448 23364845 23365469 1.440000e-47 202.0
88 TraesCS2B01G336900 chr1A 93.182 44 3 0 4132 4175 53500465 53500422 1.970000e-06 65.8
89 TraesCS2B01G336900 chr3D 80.340 412 56 13 4958 5348 296064790 296065197 1.070000e-73 289.0
90 TraesCS2B01G336900 chr3D 80.729 192 31 3 102 287 398477530 398477721 2.460000e-30 145.0
91 TraesCS2B01G336900 chr3D 75.510 147 32 4 4032 4175 58394265 58394120 1.520000e-07 69.4
92 TraesCS2B01G336900 chr3D 92.683 41 2 1 7791 7830 438684414 438684374 3.300000e-04 58.4
93 TraesCS2B01G336900 chr1B 72.965 651 142 23 7805 8448 291954223 291954846 6.700000e-46 196.0
94 TraesCS2B01G336900 chr1B 80.000 225 21 7 5215 5417 135255120 135254898 2.460000e-30 145.0
95 TraesCS2B01G336900 chr5B 80.508 236 39 7 7539 7772 85901521 85901751 3.140000e-39 174.0
96 TraesCS2B01G336900 chr5B 79.668 241 33 8 100 325 241608416 241608655 8.780000e-35 159.0
97 TraesCS2B01G336900 chr5B 79.720 143 28 1 374 516 617049008 617048867 1.500000e-17 102.0
98 TraesCS2B01G336900 chr5B 82.143 112 20 0 372 483 622620509 622620398 6.990000e-16 97.1
99 TraesCS2B01G336900 chr5B 73.799 229 45 8 372 596 702265043 702265260 9.100000e-10 76.8
100 TraesCS2B01G336900 chr6A 79.297 256 30 15 13 255 68561165 68561410 3.160000e-34 158.0
101 TraesCS2B01G336900 chr6A 84.127 63 10 0 619 681 20142235 20142173 2.550000e-05 62.1
102 TraesCS2B01G336900 chr1D 90.909 44 4 0 4132 4175 54028891 54028848 9.170000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G336900 chr2B 481117783 481126237 8454 False 15614.000000 15614 100.0000 1 8455 1 chr2B.!!$F2 8454
1 TraesCS2B01G336900 chr2A 543711863 543721819 9956 False 2451.233333 7064 90.8690 534 6354 3 chr2A.!!$F2 5820
2 TraesCS2B01G336900 chr2A 543740734 543742790 2056 False 1299.500000 2087 89.2690 6353 8455 2 chr2A.!!$F3 2102
3 TraesCS2B01G336900 chr2A 30337175 30338283 1108 True 837.000000 837 80.4310 2611 3716 1 chr2A.!!$R1 1105
4 TraesCS2B01G336900 chr2D 405599417 405609120 9703 False 1403.000000 3345 88.9845 13 7891 6 chr2D.!!$F2 7878
5 TraesCS2B01G336900 chr4A 503609114 503610398 1284 False 989.000000 989 80.9630 2421 3700 1 chr4A.!!$F5 1279
6 TraesCS2B01G336900 chr4A 36345113 36346347 1234 True 948.000000 948 80.7570 2494 3719 1 chr4A.!!$R1 1225
7 TraesCS2B01G336900 chr4A 24941066 24941700 634 False 453.000000 453 80.0940 2140 2756 1 chr4A.!!$F1 616
8 TraesCS2B01G336900 chr7D 638332033 638333885 1852 False 979.000000 979 76.7970 2142 3983 1 chr7D.!!$F3 1841
9 TraesCS2B01G336900 chr7B 734376860 734378371 1511 True 950.000000 950 78.5020 2203 3716 1 chr7B.!!$R1 1513
10 TraesCS2B01G336900 chr5D 497817258 497818568 1310 False 939.000000 939 79.8790 2421 3716 1 chr5D.!!$F2 1295
11 TraesCS2B01G336900 chr3A 620620816 620622133 1317 True 928.000000 928 79.7430 2421 3714 1 chr3A.!!$R3 1293
12 TraesCS2B01G336900 chr4D 68627763 68629077 1314 True 926.000000 926 79.7440 2421 3722 1 chr4D.!!$R1 1301
13 TraesCS2B01G336900 chr7A 727719034 727721046 2012 True 920.000000 920 75.6240 2145 4176 1 chr7A.!!$R2 2031
14 TraesCS2B01G336900 chr6D 418047074 418048699 1625 True 920.000000 920 77.4060 2479 4075 1 chr6D.!!$R1 1596
15 TraesCS2B01G336900 chr4B 128018732 128019900 1168 False 913.000000 913 81.0580 2479 3629 1 chr4B.!!$F3 1150
16 TraesCS2B01G336900 chr5A 510075142 510076158 1016 True 780.000000 780 80.8920 2146 3155 1 chr5A.!!$R2 1009
17 TraesCS2B01G336900 chr3B 675152734 675153496 762 False 549.000000 549 79.9500 2421 3206 1 chr3B.!!$F2 785
18 TraesCS2B01G336900 chrUn 16506020 16506782 762 False 492.000000 492 78.8660 2138 2891 1 chrUn.!!$F1 753
19 TraesCS2B01G336900 chr1A 23364845 23365469 624 False 202.000000 202 73.2010 7805 8448 1 chr1A.!!$F1 643

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
304 305 0.107508 CGGCCAGAAGATGACATGGT 60.108 55.0 2.24 0.0 35.17 3.55 F
1832 4488 0.034896 TCTCTGAAGTGTTTCCCGGC 59.965 55.0 0.00 0.0 32.09 6.13 F
3581 7261 0.809241 CATCTCTTCTGCACGCTCCC 60.809 60.0 0.00 0.0 0.00 4.30 F
4336 8058 0.249398 GTCTACGGGCCACTGTTGAT 59.751 55.0 4.39 0.0 39.34 2.57 F
5859 9629 0.034059 CACTCGCTCTTTGACCCTGT 59.966 55.0 0.00 0.0 0.00 4.00 F
6439 11975 0.035630 CTGGCTCTCCTCCAAACCAG 60.036 60.0 0.00 0.0 38.81 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2057 4736 0.030638 ATGAACAACAGGCAACGTGC 59.969 50.0 0.00 0.0 44.08 5.34 R
3734 7443 0.677288 CGGTAGTCACCACACCTGAA 59.323 55.0 0.00 0.0 46.14 3.02 R
4638 8364 0.107945 GAGTGCAGGAGGAAAGCGAT 60.108 55.0 0.00 0.0 0.00 4.58 R
5925 9696 0.036306 GAGGGAAAGGAAGCCGACAA 59.964 55.0 0.00 0.0 0.00 3.18 R
6810 12346 0.107312 CCACAAGAGGAGGCAGATGG 60.107 60.0 0.00 0.0 0.00 3.51 R
8310 14537 0.029567 TTTGTACCAGCGCAAAACCG 59.970 50.0 11.47 0.0 32.46 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 2.026636 TGGGGTATGAAGTACAGGTTGC 60.027 50.000 0.00 0.00 34.87 4.17
142 143 7.497595 CCTAGCCTCGGTTTATATAATGCATA 58.502 38.462 0.00 0.00 0.00 3.14
152 153 7.934120 GGTTTATATAATGCATAGGAGGCCTAG 59.066 40.741 4.42 0.00 39.70 3.02
166 167 4.651962 GGAGGCCTAGGATAATATGAGTCC 59.348 50.000 14.75 0.00 0.00 3.85
222 223 3.638160 TGCCAAGTCTTGCAAAATCTTCT 59.362 39.130 7.09 0.00 33.87 2.85
229 230 8.506437 CAAGTCTTGCAAAATCTTCTGTGTATA 58.494 33.333 0.00 0.00 0.00 1.47
230 231 8.034058 AGTCTTGCAAAATCTTCTGTGTATAC 57.966 34.615 0.00 0.00 0.00 1.47
269 270 3.269347 CCCGCTAATGAACCGCCG 61.269 66.667 0.00 0.00 0.00 6.46
271 272 4.279535 CGCTAATGAACCGCCGCG 62.280 66.667 5.59 5.59 34.50 6.46
291 292 4.452733 GGTTCTCGACCCGGCCAG 62.453 72.222 2.24 0.00 43.06 4.85
292 293 3.379445 GTTCTCGACCCGGCCAGA 61.379 66.667 2.24 0.00 0.00 3.86
293 294 2.602267 TTCTCGACCCGGCCAGAA 60.602 61.111 2.24 0.00 0.00 3.02
294 295 2.646175 TTCTCGACCCGGCCAGAAG 61.646 63.158 2.24 0.00 0.00 2.85
295 296 3.068691 CTCGACCCGGCCAGAAGA 61.069 66.667 2.24 0.00 0.00 2.87
296 297 2.363795 TCGACCCGGCCAGAAGAT 60.364 61.111 2.24 0.00 0.00 2.40
297 298 2.202932 CGACCCGGCCAGAAGATG 60.203 66.667 2.24 0.00 0.00 2.90
298 299 2.721167 CGACCCGGCCAGAAGATGA 61.721 63.158 2.24 0.00 0.00 2.92
299 300 1.153349 GACCCGGCCAGAAGATGAC 60.153 63.158 2.24 0.00 0.00 3.06
300 301 1.899437 GACCCGGCCAGAAGATGACA 61.899 60.000 2.24 0.00 0.00 3.58
301 302 1.274703 ACCCGGCCAGAAGATGACAT 61.275 55.000 2.24 0.00 0.00 3.06
302 303 0.816825 CCCGGCCAGAAGATGACATG 60.817 60.000 2.24 0.00 0.00 3.21
303 304 0.816825 CCGGCCAGAAGATGACATGG 60.817 60.000 2.24 0.00 35.84 3.66
304 305 0.107508 CGGCCAGAAGATGACATGGT 60.108 55.000 2.24 0.00 35.17 3.55
305 306 1.138859 CGGCCAGAAGATGACATGGTA 59.861 52.381 2.24 0.00 35.17 3.25
306 307 2.419990 CGGCCAGAAGATGACATGGTAA 60.420 50.000 2.24 0.00 35.17 2.85
307 308 3.209410 GGCCAGAAGATGACATGGTAAG 58.791 50.000 0.00 0.00 35.17 2.34
308 309 3.370953 GGCCAGAAGATGACATGGTAAGT 60.371 47.826 0.00 0.00 35.17 2.24
309 310 4.141711 GGCCAGAAGATGACATGGTAAGTA 60.142 45.833 0.00 0.00 35.17 2.24
310 311 4.811557 GCCAGAAGATGACATGGTAAGTAC 59.188 45.833 0.00 0.00 35.17 2.73
311 312 5.360591 CCAGAAGATGACATGGTAAGTACC 58.639 45.833 0.00 0.17 46.62 3.34
312 313 5.360591 CAGAAGATGACATGGTAAGTACCC 58.639 45.833 5.05 0.00 45.87 3.69
313 314 4.409247 AGAAGATGACATGGTAAGTACCCC 59.591 45.833 5.05 0.00 45.87 4.95
314 315 4.008916 AGATGACATGGTAAGTACCCCT 57.991 45.455 5.05 0.00 45.87 4.79
315 316 5.152306 AGATGACATGGTAAGTACCCCTA 57.848 43.478 5.05 0.00 45.87 3.53
316 317 5.148502 AGATGACATGGTAAGTACCCCTAG 58.851 45.833 5.05 0.00 45.87 3.02
317 318 4.341863 TGACATGGTAAGTACCCCTAGT 57.658 45.455 5.05 0.00 45.87 2.57
318 319 4.691238 TGACATGGTAAGTACCCCTAGTT 58.309 43.478 5.05 0.00 45.87 2.24
319 320 5.095809 TGACATGGTAAGTACCCCTAGTTT 58.904 41.667 5.05 0.00 45.87 2.66
320 321 6.262980 TGACATGGTAAGTACCCCTAGTTTA 58.737 40.000 5.05 0.00 45.87 2.01
321 322 6.381994 TGACATGGTAAGTACCCCTAGTTTAG 59.618 42.308 5.05 0.00 45.87 1.85
322 323 5.664457 ACATGGTAAGTACCCCTAGTTTAGG 59.336 44.000 5.05 0.00 45.87 2.69
323 324 5.550829 TGGTAAGTACCCCTAGTTTAGGA 57.449 43.478 5.05 0.00 45.20 2.94
324 325 5.272402 TGGTAAGTACCCCTAGTTTAGGAC 58.728 45.833 5.05 0.00 45.20 3.85
325 326 5.016675 TGGTAAGTACCCCTAGTTTAGGACT 59.983 44.000 5.05 0.00 45.20 3.85
326 327 5.596361 GGTAAGTACCCCTAGTTTAGGACTC 59.404 48.000 3.71 0.00 45.88 3.36
396 397 8.309163 TGCTCGCATTTTTCTGAATTTATTTT 57.691 26.923 0.00 0.00 0.00 1.82
422 423 5.156355 CCTTTTTGATGATGTTCGTTCAGG 58.844 41.667 0.00 0.00 0.00 3.86
428 429 2.778299 TGATGTTCGTTCAGGGAAAGG 58.222 47.619 0.00 0.00 0.00 3.11
453 454 2.159296 TGTTCCCATCGACTATGACACG 60.159 50.000 0.00 0.00 37.86 4.49
494 495 6.314648 TCAATATCAAGATGTTGTGTCAGCTC 59.685 38.462 15.92 0.00 39.79 4.09
508 509 3.701542 TGTCAGCTCAATATCTCGAAGGT 59.298 43.478 0.00 0.00 0.00 3.50
510 511 3.701542 TCAGCTCAATATCTCGAAGGTGT 59.298 43.478 9.34 0.00 0.00 4.16
528 529 3.709653 GGTGTTCATAGGATAGGGTGTCA 59.290 47.826 0.00 0.00 0.00 3.58
530 531 5.116882 GTGTTCATAGGATAGGGTGTCAAC 58.883 45.833 0.00 0.00 0.00 3.18
545 546 2.055838 GTCAACGCGTGTGTTCATAGA 58.944 47.619 14.98 0.00 0.00 1.98
592 1061 5.295787 TGAGCAGGTTGTACTGTGTTAAAAG 59.704 40.000 0.00 0.00 40.59 2.27
596 1065 7.068226 AGCAGGTTGTACTGTGTTAAAAGAAAT 59.932 33.333 0.00 0.00 40.59 2.17
598 1067 8.621286 CAGGTTGTACTGTGTTAAAAGAAATCT 58.379 33.333 0.00 0.00 33.81 2.40
599 1068 9.841295 AGGTTGTACTGTGTTAAAAGAAATCTA 57.159 29.630 0.00 0.00 0.00 1.98
601 1070 9.874215 GTTGTACTGTGTTAAAAGAAATCTACC 57.126 33.333 0.00 0.00 0.00 3.18
602 1071 9.616156 TTGTACTGTGTTAAAAGAAATCTACCA 57.384 29.630 0.00 0.00 0.00 3.25
603 1072 9.048446 TGTACTGTGTTAAAAGAAATCTACCAC 57.952 33.333 0.00 0.00 0.00 4.16
642 2190 6.069705 ACTCCCTCCGTTCCAAAATATTTA 57.930 37.500 0.01 0.00 0.00 1.40
644 2192 6.771267 ACTCCCTCCGTTCCAAAATATTTATC 59.229 38.462 0.01 0.00 0.00 1.75
646 2194 5.048991 CCCTCCGTTCCAAAATATTTATCGG 60.049 44.000 0.01 10.91 37.29 4.18
647 2195 5.761234 CCTCCGTTCCAAAATATTTATCGGA 59.239 40.000 20.09 20.09 41.50 4.55
722 2332 6.042552 TCAATTTTTCAGCAAGTATTCCCCAA 59.957 34.615 0.00 0.00 0.00 4.12
795 3378 8.157476 ACACACAAAGACTTTGATTCCTAGTAT 58.843 33.333 30.01 4.94 43.26 2.12
796 3379 8.446273 CACACAAAGACTTTGATTCCTAGTATG 58.554 37.037 30.01 17.18 43.26 2.39
799 3382 7.335422 ACAAAGACTTTGATTCCTAGTATGCTG 59.665 37.037 30.01 2.88 43.26 4.41
809 3392 8.340002 TGATTCCTAGTATGCTGGTATCTCTAT 58.660 37.037 14.47 0.00 0.00 1.98
926 3554 1.301479 GACGGGAGAAACGCAAGGT 60.301 57.895 0.00 0.00 46.39 3.50
993 3621 4.502604 CGAAGAAACCAGGTGACTCCTTTA 60.503 45.833 0.00 0.00 45.67 1.85
1012 3640 5.300286 CCTTTAAATTTCATGGCGATCCTCT 59.700 40.000 0.00 0.00 0.00 3.69
1016 3644 5.954296 AATTTCATGGCGATCCTCTTATG 57.046 39.130 0.00 0.00 0.00 1.90
1149 3777 1.004745 ACGAAGTCTTGGGGCATCAAT 59.995 47.619 0.00 0.00 29.74 2.57
1194 3824 4.520874 CAGTATGTGGATACGATGTCTCCT 59.479 45.833 0.00 0.00 39.69 3.69
1222 3854 4.943705 TCTAATCTTGTTCTTGGGATGCAC 59.056 41.667 0.00 0.00 0.00 4.57
1269 3901 5.017490 TCCTCTCTAACCATCTCGTTCTTT 58.983 41.667 0.00 0.00 0.00 2.52
1319 3951 7.624360 TTGCCCATCTTATTAACTTGTAGTG 57.376 36.000 0.00 0.00 0.00 2.74
1341 3973 2.056094 TCGATGATAGCATGCGTGAG 57.944 50.000 13.01 1.74 34.11 3.51
1378 4022 9.834628 CAACAAACTTCATGGTAATTACGTTAT 57.165 29.630 9.46 1.83 0.00 1.89
1485 4133 2.504367 ACCCGACTTTTCTTCATGGTG 58.496 47.619 0.00 0.00 0.00 4.17
1495 4143 1.002430 TCTTCATGGTGAGTGCAGACC 59.998 52.381 3.00 3.00 0.00 3.85
1505 4153 4.662961 TGCAGACCAGTCGCACCG 62.663 66.667 11.44 0.00 35.45 4.94
1530 4183 2.094234 CCCGTGTTTCATCAATTTCCCC 60.094 50.000 0.00 0.00 0.00 4.81
1564 4217 1.744741 GCTGTGAGCTTCTCAGGGC 60.745 63.158 13.01 1.74 41.46 5.19
1763 4419 2.030007 GCAAACAGCAGAGGCAACAATA 60.030 45.455 0.00 0.00 44.61 1.90
1784 4440 1.153349 GATGGTCGAGAAGGTGGCC 60.153 63.158 0.00 0.00 0.00 5.36
1822 4478 1.867615 CCGACGACGTCTCTGAAGT 59.132 57.895 24.36 2.28 37.88 3.01
1832 4488 0.034896 TCTCTGAAGTGTTTCCCGGC 59.965 55.000 0.00 0.00 32.09 6.13
1929 4586 4.098960 CCGAGCACTACTCCATAAGGTTAA 59.901 45.833 0.00 0.00 43.01 2.01
1999 4657 2.178580 TCCGTTATTCCGTGGTACCTT 58.821 47.619 14.36 0.00 0.00 3.50
2079 4758 1.748493 ACGTTGCCTGTTGTTCATTGT 59.252 42.857 0.00 0.00 0.00 2.71
2187 4869 1.243342 AACACCGTATCCGTCCACGA 61.243 55.000 0.00 0.00 43.02 4.35
2259 4943 2.741486 TAGCCACAAACACCCGCCTC 62.741 60.000 0.00 0.00 0.00 4.70
2304 5000 6.516739 TCAAAATAACCGCATACCAAATCA 57.483 33.333 0.00 0.00 0.00 2.57
2431 5133 6.183360 GCACATATGTACTAGTTGTCCCCTTA 60.183 42.308 8.32 0.00 0.00 2.69
2433 5135 7.709613 CACATATGTACTAGTTGTCCCCTTAAC 59.290 40.741 8.32 0.00 0.00 2.01
2435 5137 3.511146 TGTACTAGTTGTCCCCTTAACCG 59.489 47.826 0.00 0.00 0.00 4.44
2436 5138 1.277273 ACTAGTTGTCCCCTTAACCGC 59.723 52.381 0.00 0.00 0.00 5.68
2439 5141 2.154747 TTGTCCCCTTAACCGCCCA 61.155 57.895 0.00 0.00 0.00 5.36
2442 5146 1.926489 TCCCCTTAACCGCCCACAT 60.926 57.895 0.00 0.00 0.00 3.21
2531 5235 4.909696 ACAAATTCATCAAACGTGTCCA 57.090 36.364 0.00 0.00 0.00 4.02
2682 5410 7.339212 TCCAATTATTTACAGGTCCATGAACAG 59.661 37.037 0.00 0.00 0.00 3.16
2809 5541 2.026262 TGGTCTTGACAAAGATAGCCCC 60.026 50.000 3.08 0.00 44.18 5.80
2810 5542 2.280628 GTCTTGACAAAGATAGCCCCG 58.719 52.381 0.00 0.00 44.18 5.73
2857 5591 9.265901 GATAGTAGTTCATGTTGTATTCATGCT 57.734 33.333 0.00 0.00 41.40 3.79
2934 5675 3.802866 TGGATATCGTTGCAGCACATTA 58.197 40.909 0.00 0.00 0.00 1.90
2950 5691 5.942236 AGCACATTAATGTCATTGTCAGACT 59.058 36.000 18.25 4.36 39.39 3.24
3030 5773 5.361857 CAGAAATGATGGTGGGCTTCTTAAT 59.638 40.000 0.00 0.00 0.00 1.40
3062 5805 6.857437 AATATTGCCCTTGTAGAGCTTTTT 57.143 33.333 0.00 0.00 0.00 1.94
3093 5836 2.173143 TCCATCTCCAATGCATGCAGTA 59.827 45.455 26.69 8.78 0.00 2.74
3175 5921 3.374988 TGTCTGCAACAGTTGTTTCTCTG 59.625 43.478 14.88 2.40 35.83 3.35
3372 7049 4.665451 TGGCATCCTTCTTCAAGATGAAA 58.335 39.130 1.79 0.00 35.73 2.69
3581 7261 0.809241 CATCTCTTCTGCACGCTCCC 60.809 60.000 0.00 0.00 0.00 4.30
3614 7294 2.103432 ACCACCTACATTGTTGTCGTCA 59.897 45.455 0.00 0.00 37.28 4.35
3722 7431 3.440127 CCCAAAGAAGAAGGGGCATTTA 58.560 45.455 0.00 0.00 38.98 1.40
3734 7443 3.714280 AGGGGCATTTAACCAAACACTTT 59.286 39.130 0.00 0.00 0.00 2.66
3787 7496 1.466856 ACCTACGCCATAGACGAACA 58.533 50.000 0.00 0.00 31.83 3.18
3837 7548 1.548719 CAACATGGAGTCCGGTGTAGA 59.451 52.381 17.47 0.00 0.00 2.59
3848 7559 1.065701 CCGGTGTAGAAGTGGATCTCG 59.934 57.143 0.00 0.00 0.00 4.04
3928 7640 0.741221 GCGGCGAGAGAGAAAATGGT 60.741 55.000 12.98 0.00 0.00 3.55
3933 7645 2.226437 GCGAGAGAGAAAATGGTTGCAA 59.774 45.455 0.00 0.00 0.00 4.08
3970 7683 2.284995 GAGGCAGGTCCAGGAGGT 60.285 66.667 0.00 0.00 37.29 3.85
3996 7709 2.780924 TGGGACTTTGGGTGGCCT 60.781 61.111 3.32 0.00 0.00 5.19
4099 7813 1.538204 CGTTTGGATCGGTCGATGGAT 60.538 52.381 10.77 1.30 34.60 3.41
4110 7824 0.763986 TCGATGGATGGATGCAGGGA 60.764 55.000 0.00 0.00 0.00 4.20
4111 7825 0.327259 CGATGGATGGATGCAGGGAT 59.673 55.000 0.00 0.00 0.00 3.85
4141 7855 0.953960 GCAAAAGATGTCCGGACCGT 60.954 55.000 31.19 20.04 0.00 4.83
4182 7896 1.285950 GTTTGAGGGTCCGCTTTGC 59.714 57.895 0.00 0.00 0.00 3.68
4198 7912 0.536233 TTGCAGGCGCTCTTAAACCA 60.536 50.000 7.64 0.00 39.64 3.67
4213 7927 5.522460 TCTTAAACCATATCGCTACTTGTGC 59.478 40.000 0.00 0.00 0.00 4.57
4235 7949 5.809562 TGCAGGACACAAACAATGTAAAAAG 59.190 36.000 0.00 0.00 41.46 2.27
4236 7950 5.810074 GCAGGACACAAACAATGTAAAAAGT 59.190 36.000 0.00 0.00 41.46 2.66
4237 7951 6.312672 GCAGGACACAAACAATGTAAAAAGTT 59.687 34.615 0.00 0.00 41.46 2.66
4238 7952 7.489757 GCAGGACACAAACAATGTAAAAAGTTA 59.510 33.333 0.00 0.00 41.46 2.24
4267 7989 3.699538 TGCAATACCAGTGACGACTAGAT 59.300 43.478 0.00 0.00 0.00 1.98
4292 8014 5.411361 CGATGTTTCATCCTTTCTACAACCA 59.589 40.000 4.48 0.00 0.00 3.67
4311 8033 3.644265 ACCAAAATACCTTTCCCAACACC 59.356 43.478 0.00 0.00 0.00 4.16
4312 8034 3.643792 CCAAAATACCTTTCCCAACACCA 59.356 43.478 0.00 0.00 0.00 4.17
4336 8058 0.249398 GTCTACGGGCCACTGTTGAT 59.751 55.000 4.39 0.00 39.34 2.57
4390 8112 1.153647 GCCACCATCGATGTCGTCA 60.154 57.895 23.27 0.00 40.80 4.35
4408 8130 4.095782 TCGTCATCACAATCTACATCGTCA 59.904 41.667 0.00 0.00 0.00 4.35
4422 8144 4.335416 ACATCGTCATTGGTTCTCCATTT 58.665 39.130 0.00 0.00 43.91 2.32
4430 8152 6.642540 GTCATTGGTTCTCCATTTTTGTCTTC 59.357 38.462 0.00 0.00 43.91 2.87
4440 8162 6.364701 TCCATTTTTGTCTTCAGAAGGAGAA 58.635 36.000 10.42 0.05 0.00 2.87
4489 8215 6.560003 ATGTCATGTTGAGTATTGAGGGTA 57.440 37.500 0.00 0.00 0.00 3.69
4491 8217 5.104941 TGTCATGTTGAGTATTGAGGGTAGG 60.105 44.000 0.00 0.00 0.00 3.18
4525 8251 4.380550 GCTACAAAATCAGCCCACCTAAAC 60.381 45.833 0.00 0.00 0.00 2.01
4611 8337 9.965902 AGGCCATCCTTATAAAAATAGATACTG 57.034 33.333 5.01 0.00 40.66 2.74
4638 8364 8.593679 ACATATTGGTCCTTTGATATATCGACA 58.406 33.333 15.84 4.27 0.00 4.35
4786 8516 0.888619 TCGAAGAAGCCGATGACACT 59.111 50.000 0.00 0.00 0.00 3.55
4803 8534 5.410924 TGACACTGAACTGAGGATAAATCG 58.589 41.667 0.00 0.00 0.00 3.34
4817 8548 5.069251 AGGATAAATCGTCGTTCCAGAGAAT 59.931 40.000 0.00 0.00 33.67 2.40
4824 8555 4.216902 TCGTCGTTCCAGAGAATAAAGTGA 59.783 41.667 0.00 0.00 33.67 3.41
4862 8593 9.529675 GGACAACCATACATGATCTGTCCAGAT 62.530 44.444 20.72 9.49 43.01 2.90
4875 8606 4.400884 TCTGTCCAGATAGAACTTGAGAGC 59.599 45.833 0.00 0.00 31.41 4.09
4903 8634 4.286291 ACCTCGAAGACCACCTAGAAAAAT 59.714 41.667 0.00 0.00 0.00 1.82
4957 8688 0.102844 CCAAAGCACAACACACCCTG 59.897 55.000 0.00 0.00 0.00 4.45
4977 8708 2.976185 TGTGTTGGTGTCCTGGATTAGA 59.024 45.455 0.00 0.00 0.00 2.10
5064 8796 1.713005 CCATGCTAGCCCTGGTCCAT 61.713 60.000 20.21 0.34 0.00 3.41
5088 8820 5.069648 TGGCGTAATCAAGATGAAGATCTCT 59.930 40.000 0.00 0.00 38.03 3.10
5109 8841 0.605589 GGAGGCTTGGCGTACACTTT 60.606 55.000 0.00 0.00 0.00 2.66
5121 8853 5.413213 TGGCGTACACTTTAAGCATATTTGT 59.587 36.000 0.00 0.00 0.00 2.83
5140 8872 4.541973 TGTATGATCGGCATGCTTATCT 57.458 40.909 23.86 15.83 39.94 1.98
5179 8911 3.272716 TGTGTAAACCCTAGGTACCCA 57.727 47.619 8.74 0.00 33.12 4.51
5186 8935 1.038280 CCCTAGGTACCCATGTCGTC 58.962 60.000 8.74 0.00 0.00 4.20
5204 8953 2.737783 CGTCTAGTCTATAGAGGCACGG 59.262 54.545 1.64 0.00 0.00 4.94
5285 9034 7.717436 TGTACTTTGTACTCCATCACAATCAAA 59.283 33.333 8.94 0.00 34.78 2.69
5286 9035 7.581213 ACTTTGTACTCCATCACAATCAAAA 57.419 32.000 0.00 0.00 34.78 2.44
5303 9052 7.122055 ACAATCAAAAATATAAGAAGCGGGACA 59.878 33.333 0.00 0.00 0.00 4.02
5337 9086 3.711704 CTCATCAAGAGGGCCTAAACCTA 59.288 47.826 5.73 0.00 40.84 3.08
5376 9145 1.627329 AGCTCAGATCACCAAGCTTGA 59.373 47.619 28.05 8.71 42.23 3.02
5422 9191 1.568504 TTAGAAGCGACACCCTCCAT 58.431 50.000 0.00 0.00 0.00 3.41
5540 9309 2.270434 AGAATGAACCCTAGCCAGGA 57.730 50.000 0.00 0.00 45.91 3.86
5547 9316 1.609626 ACCCTAGCCAGGACTAGAGA 58.390 55.000 15.78 0.00 45.91 3.10
5597 9367 0.037605 GTTCCACCACCTCGACGATT 60.038 55.000 0.00 0.00 0.00 3.34
5598 9368 0.682852 TTCCACCACCTCGACGATTT 59.317 50.000 0.00 0.00 0.00 2.17
5616 9386 5.104900 ACGATTTTGTAAGGCACCTAGAGAT 60.105 40.000 0.00 0.00 0.00 2.75
5623 9393 5.604231 TGTAAGGCACCTAGAGATGATGATT 59.396 40.000 0.00 0.00 0.00 2.57
5680 9450 1.134371 GGGAGATGAAAGAGTTCCCCG 60.134 57.143 0.00 0.00 41.36 5.73
5734 9504 0.543277 TGGTGACTGGATGGAGATGC 59.457 55.000 0.00 0.00 0.00 3.91
5766 9536 0.953960 CCTCTACCAAACACACGCCC 60.954 60.000 0.00 0.00 0.00 6.13
5813 9583 3.610479 CCCACCCCAAACCCCCAT 61.610 66.667 0.00 0.00 0.00 4.00
5845 9615 3.705072 ACCTAACCCCTCTATTTCACTCG 59.295 47.826 0.00 0.00 0.00 4.18
5859 9629 0.034059 CACTCGCTCTTTGACCCTGT 59.966 55.000 0.00 0.00 0.00 4.00
5867 9637 1.202758 TCTTTGACCCTGTTGTCGCAT 60.203 47.619 0.00 0.00 38.11 4.73
5896 9667 9.778741 CTCTCTGTTATCTCTCTACTTAGATGT 57.221 37.037 0.00 0.00 34.36 3.06
5925 9696 4.689062 TCTCTCCATCACCTCTTTAACCT 58.311 43.478 0.00 0.00 0.00 3.50
5960 9731 5.324832 TTCCCTCAACTTTCTTCCATCTT 57.675 39.130 0.00 0.00 0.00 2.40
5961 9732 4.655963 TCCCTCAACTTTCTTCCATCTTG 58.344 43.478 0.00 0.00 0.00 3.02
5977 9748 0.667184 CTTGGCCGCAAACATTGTCC 60.667 55.000 0.00 0.00 0.00 4.02
5981 9752 1.606313 CCGCAAACATTGTCCCCCT 60.606 57.895 0.00 0.00 0.00 4.79
5999 9770 4.944317 CCCCCTTCATCTTCTCTTTTGTAC 59.056 45.833 0.00 0.00 0.00 2.90
6107 9880 0.764752 GGATGGGATCTTCTCGGGGT 60.765 60.000 0.00 0.00 0.00 4.95
6154 9927 3.764434 CTCTAGCCCTTCGCCTATAATCA 59.236 47.826 0.00 0.00 38.78 2.57
6250 11503 6.521151 AGCTTTTCATCCCTCAAAACATAG 57.479 37.500 0.00 0.00 0.00 2.23
6273 11526 5.104610 AGCTCTTCATCCTGATTTTGCTCTA 60.105 40.000 0.00 0.00 0.00 2.43
6313 11566 3.653835 AAAATAGAGCCAACCTCCTCC 57.346 47.619 0.00 0.00 41.74 4.30
6315 11568 0.400670 ATAGAGCCAACCTCCTCCCC 60.401 60.000 0.00 0.00 41.74 4.81
6316 11569 2.547123 TAGAGCCAACCTCCTCCCCC 62.547 65.000 0.00 0.00 41.74 5.40
6317 11570 3.952799 GAGCCAACCTCCTCCCCCT 62.953 68.421 0.00 0.00 34.35 4.79
6318 11571 3.412408 GCCAACCTCCTCCCCCTC 61.412 72.222 0.00 0.00 0.00 4.30
6319 11572 2.692741 CCAACCTCCTCCCCCTCC 60.693 72.222 0.00 0.00 0.00 4.30
6320 11573 2.692741 CAACCTCCTCCCCCTCCC 60.693 72.222 0.00 0.00 0.00 4.30
6321 11574 4.040198 AACCTCCTCCCCCTCCCC 62.040 72.222 0.00 0.00 0.00 4.81
6335 11588 2.115266 CCCCTCCCCAACACACAC 59.885 66.667 0.00 0.00 0.00 3.82
6359 11612 2.634639 AAAAATAACCCCTCCCCCAC 57.365 50.000 0.00 0.00 0.00 4.61
6360 11613 1.473550 AAAATAACCCCTCCCCCACA 58.526 50.000 0.00 0.00 0.00 4.17
6361 11614 0.708209 AAATAACCCCTCCCCCACAC 59.292 55.000 0.00 0.00 0.00 3.82
6368 11900 0.326618 CCCTCCCCCACACTCATAGT 60.327 60.000 0.00 0.00 0.00 2.12
6378 11914 2.187685 CTCATAGTGCGCCAGCCA 59.812 61.111 4.18 0.00 44.33 4.75
6438 11974 0.768221 ACTGGCTCTCCTCCAAACCA 60.768 55.000 0.00 0.00 32.41 3.67
6439 11975 0.035630 CTGGCTCTCCTCCAAACCAG 60.036 60.000 0.00 0.00 38.81 4.00
6491 12027 3.901570 TTCCCCATAGGATTCCCATTG 57.098 47.619 0.00 0.00 46.94 2.82
6551 12087 0.604578 GTGCCACCCTACACTCGTTA 59.395 55.000 0.00 0.00 33.92 3.18
6581 12117 1.270305 CGGGATATTGTGTCATCGCCT 60.270 52.381 0.00 0.00 32.15 5.52
6595 12131 7.556275 TGTGTCATCGCCTGATATAGTATATCA 59.444 37.037 24.80 24.80 35.97 2.15
6628 12164 2.665185 GACGCGCCCAACTTGTCT 60.665 61.111 5.73 0.00 0.00 3.41
6653 12189 4.284490 AGAGGACCGCACATATATGACAAT 59.716 41.667 19.63 0.81 0.00 2.71
6655 12191 3.120199 GGACCGCACATATATGACAATGC 60.120 47.826 19.63 16.04 0.00 3.56
6682 12218 2.146342 CATCAAAAGCCGCCGATAGAT 58.854 47.619 0.00 0.00 39.76 1.98
6692 12228 2.619177 CCGCCGATAGATATCCGATCTT 59.381 50.000 11.52 0.00 39.76 2.40
6702 12238 0.563173 ATCCGATCTTGGAGGAGGGA 59.437 55.000 0.00 0.00 42.45 4.20
6756 12292 1.991430 CTCGTCGCTGTTGGATTCG 59.009 57.895 0.00 0.00 0.00 3.34
6759 12295 1.710339 GTCGCTGTTGGATTCGAGC 59.290 57.895 0.00 0.00 0.00 5.03
6763 12299 1.661341 GCTGTTGGATTCGAGCTCAT 58.339 50.000 15.40 0.00 0.00 2.90
6783 12319 2.124151 GCATGGACGGGGAGCAAT 60.124 61.111 0.00 0.00 0.00 3.56
6790 12326 1.303317 ACGGGGAGCAATCCAACAC 60.303 57.895 0.00 0.00 0.00 3.32
6791 12327 1.303236 CGGGGAGCAATCCAACACA 60.303 57.895 0.00 0.00 0.00 3.72
6792 12328 0.893270 CGGGGAGCAATCCAACACAA 60.893 55.000 0.00 0.00 0.00 3.33
6793 12329 0.603065 GGGGAGCAATCCAACACAAC 59.397 55.000 0.00 0.00 0.00 3.32
6845 12381 1.646447 TGTGGGAGGAGGTAGAGACAT 59.354 52.381 0.00 0.00 0.00 3.06
6846 12382 2.035632 GTGGGAGGAGGTAGAGACATG 58.964 57.143 0.00 0.00 0.00 3.21
6894 12430 1.553690 AAGCACCATACAGCGGAGGT 61.554 55.000 0.00 0.00 41.48 3.85
6935 12471 1.000274 CCGCTATCGTCATCATGGTCA 60.000 52.381 0.00 0.00 0.00 4.02
6974 12510 4.366603 TCGTCGTCGAGAAGGACA 57.633 55.556 0.00 0.00 41.80 4.02
6977 12513 1.848932 CGTCGTCGAGAAGGACACCA 61.849 60.000 0.00 0.00 41.80 4.17
7029 12565 1.684450 TGTTCACCTAGCTTGACGACA 59.316 47.619 0.00 0.00 0.00 4.35
7213 12750 8.344831 GCTTATGTTCAATGTGATAGTATTGCA 58.655 33.333 0.00 0.00 34.96 4.08
7402 12940 3.303132 GGTGATTGTGTGTGAAGACGTTC 60.303 47.826 0.00 0.00 0.00 3.95
7415 12953 6.017770 TGTGAAGACGTTCGGTTCATATTTTT 60.018 34.615 12.70 0.00 35.17 1.94
7480 13018 5.103301 TGAGATAGAGGAAGAGGTGGATTCT 60.103 44.000 0.00 0.00 0.00 2.40
7543 13081 3.829601 AGTAGCAGGTGTATATGGAGAGC 59.170 47.826 0.00 0.00 0.00 4.09
7575 13113 4.220413 CAGGCTCATCTGCACCTG 57.780 61.111 4.56 4.56 43.45 4.00
7654 13193 7.428020 TCTTTGCATGGTAGATAATTTGATGC 58.572 34.615 0.00 0.00 36.19 3.91
7665 13204 0.523072 ATTTGATGCGTGAGGTGCAC 59.477 50.000 8.80 8.80 46.57 4.57
7676 13215 2.622942 GTGAGGTGCACTCCAAATTTCA 59.377 45.455 17.98 5.47 46.01 2.69
7693 13232 8.407457 CAAATTTCAGATCATTTGGACATCTG 57.593 34.615 7.88 2.32 43.38 2.90
7801 14023 5.172934 GGTTGACGGTCATTCATAGTGTTA 58.827 41.667 12.26 0.00 0.00 2.41
7851 14074 6.867662 ATCAAGTCGAATGAACTTTCTGTT 57.132 33.333 6.29 0.00 42.38 3.16
7934 14157 6.015434 TGTGTGACTTGTATGTGAGACTATGT 60.015 38.462 0.00 0.00 0.00 2.29
7947 14172 7.847096 TGTGAGACTATGTATTGTATGGTGTT 58.153 34.615 0.00 0.00 0.00 3.32
7996 14221 2.027625 GAGACCAAACTCGCACCCG 61.028 63.158 0.00 0.00 0.00 5.28
7997 14222 3.047877 GACCAAACTCGCACCCGG 61.048 66.667 0.00 0.00 34.56 5.73
8006 14231 3.760035 CGCACCCGGCTAGACTGT 61.760 66.667 0.00 0.00 41.67 3.55
8016 14241 3.181475 CCGGCTAGACTGTCATACAACAT 60.181 47.826 10.88 0.00 0.00 2.71
8038 14263 8.109705 ACATAGTAGATAGCTTGATCTCACTG 57.890 38.462 2.16 1.04 37.38 3.66
8079 14304 1.486310 AGCCGAATAGCATGGACTTGA 59.514 47.619 0.00 0.00 34.23 3.02
8091 14316 2.191400 TGGACTTGAAGGGATCTGAGG 58.809 52.381 0.00 0.00 0.00 3.86
8093 14318 2.573915 GGACTTGAAGGGATCTGAGGTT 59.426 50.000 0.00 0.00 0.00 3.50
8101 14326 2.022527 AGGGATCTGAGGTTAGCTCCTT 60.023 50.000 9.04 0.00 38.02 3.36
8113 14338 1.343069 AGCTCCTTGAAGTCCGAACT 58.657 50.000 0.00 0.00 37.32 3.01
8120 14346 3.492656 CCTTGAAGTCCGAACTGACTCAA 60.493 47.826 0.00 5.66 44.68 3.02
8136 14362 6.146184 ACTGACTCAAATAACTTGTCATGTCG 59.854 38.462 0.00 0.00 37.10 4.35
8167 14393 0.609131 CGATGGGACCCAGCAAAAGT 60.609 55.000 27.80 4.76 40.32 2.66
8175 14401 3.440522 GGACCCAGCAAAAGTTCATCTAC 59.559 47.826 0.00 0.00 0.00 2.59
8176 14402 3.421844 ACCCAGCAAAAGTTCATCTACC 58.578 45.455 0.00 0.00 0.00 3.18
8234 14461 1.037579 AGGTCGATGCATGGACTCGA 61.038 55.000 32.23 20.71 38.95 4.04
8245 14472 0.322187 TGGACTCGAGACGATGACCA 60.322 55.000 21.68 12.65 34.61 4.02
8264 14491 4.368003 CCTACTTAGGGCCGACCA 57.632 61.111 0.00 0.00 43.89 4.02
8265 14492 2.836020 CCTACTTAGGGCCGACCAT 58.164 57.895 0.00 0.00 43.89 3.55
8266 14493 2.005370 CCTACTTAGGGCCGACCATA 57.995 55.000 0.00 0.00 43.89 2.74
8267 14494 1.893801 CCTACTTAGGGCCGACCATAG 59.106 57.143 0.00 0.00 43.89 2.23
8268 14495 1.893801 CTACTTAGGGCCGACCATAGG 59.106 57.143 0.00 0.00 43.89 2.57
8269 14496 0.763223 ACTTAGGGCCGACCATAGGG 60.763 60.000 0.00 0.00 43.89 3.53
8288 14515 1.290955 CCGACCAAACGCTACTCCA 59.709 57.895 0.00 0.00 0.00 3.86
8292 14519 3.454375 CGACCAAACGCTACTCCATTAT 58.546 45.455 0.00 0.00 0.00 1.28
8322 14549 2.392933 TAAAGTTCGGTTTTGCGCTG 57.607 45.000 9.73 0.00 0.00 5.18
8325 14552 0.533308 AGTTCGGTTTTGCGCTGGTA 60.533 50.000 9.73 0.00 0.00 3.25
8367 14594 9.903682 AGATATGGCGAATTAAGAAATGATTTG 57.096 29.630 0.00 0.00 0.00 2.32
8394 14621 4.194678 TCCGACTTGGGGAGATATACTT 57.805 45.455 0.00 0.00 38.76 2.24
8430 14657 3.317993 TGATCCGACTCGAATAAGCATGA 59.682 43.478 0.00 0.00 0.00 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 4.397481 AGCAAGTCGTAGGGTATTAACC 57.603 45.455 0.00 0.00 45.97 2.85
10 11 5.870978 TCAAAGCAAGTCGTAGGGTATTAAC 59.129 40.000 0.00 0.00 0.00 2.01
24 25 9.961265 CATCATATCAATACAATCAAAGCAAGT 57.039 29.630 0.00 0.00 0.00 3.16
110 111 0.674534 AACCGAGGCTAGGCTAATCG 59.325 55.000 20.27 18.05 0.00 3.34
142 143 5.524535 GACTCATATTATCCTAGGCCTCCT 58.475 45.833 9.68 0.00 37.71 3.69
152 153 4.951094 AGCCGACTAGGACTCATATTATCC 59.049 45.833 0.00 0.00 45.00 2.59
166 167 1.351012 CACCGACGTAGCCGACTAG 59.649 63.158 0.00 0.00 37.88 2.57
222 223 2.623535 GCAACCCATGACGTATACACA 58.376 47.619 3.32 3.09 0.00 3.72
277 278 2.856039 ATCTTCTGGCCGGGTCGAGA 62.856 60.000 12.87 10.65 0.00 4.04
286 287 3.209410 CTTACCATGTCATCTTCTGGCC 58.791 50.000 0.00 0.00 31.72 5.36
287 288 3.878778 ACTTACCATGTCATCTTCTGGC 58.121 45.455 0.00 0.00 31.72 4.85
288 289 5.360591 GGTACTTACCATGTCATCTTCTGG 58.639 45.833 0.17 0.00 45.73 3.86
299 300 8.297825 AGTCCTAAACTAGGGGTACTTACCATG 61.298 44.444 7.73 0.00 46.24 3.66
300 301 6.298662 AGTCCTAAACTAGGGGTACTTACCAT 60.299 42.308 7.73 0.00 46.24 3.55
301 302 5.016675 AGTCCTAAACTAGGGGTACTTACCA 59.983 44.000 7.73 0.00 46.24 3.25
302 303 5.523588 AGTCCTAAACTAGGGGTACTTACC 58.476 45.833 0.00 0.00 46.24 2.85
303 304 5.596361 GGAGTCCTAAACTAGGGGTACTTAC 59.404 48.000 0.41 0.00 46.24 2.34
304 305 5.632427 CGGAGTCCTAAACTAGGGGTACTTA 60.632 48.000 7.77 0.00 46.24 2.24
305 306 4.618635 GGAGTCCTAAACTAGGGGTACTT 58.381 47.826 0.41 0.00 46.24 2.24
306 307 3.372458 CGGAGTCCTAAACTAGGGGTACT 60.372 52.174 7.77 0.00 46.24 2.73
307 308 2.954989 CGGAGTCCTAAACTAGGGGTAC 59.045 54.545 7.77 0.00 46.24 3.34
308 309 2.582636 ACGGAGTCCTAAACTAGGGGTA 59.417 50.000 7.77 0.00 46.24 3.69
309 310 1.360507 ACGGAGTCCTAAACTAGGGGT 59.639 52.381 7.77 0.00 46.24 4.95
310 311 2.156102 ACGGAGTCCTAAACTAGGGG 57.844 55.000 7.77 0.00 46.24 4.79
324 325 2.358737 GTGGGCTGGTTGACGGAG 60.359 66.667 0.00 0.00 0.00 4.63
325 326 3.948719 GGTGGGCTGGTTGACGGA 61.949 66.667 0.00 0.00 0.00 4.69
326 327 3.567579 ATGGTGGGCTGGTTGACGG 62.568 63.158 0.00 0.00 0.00 4.79
396 397 5.471797 TGAACGAACATCATCAAAAAGGCTA 59.528 36.000 0.00 0.00 0.00 3.93
407 408 3.009033 TCCTTTCCCTGAACGAACATCAT 59.991 43.478 0.00 0.00 0.00 2.45
438 439 2.217167 CACATGCGTGTCATAGTCGATG 59.783 50.000 9.07 0.00 38.41 3.84
439 440 2.463876 CACATGCGTGTCATAGTCGAT 58.536 47.619 9.07 0.00 38.41 3.59
453 454 7.263100 TGATATTGATGAAGTTACCACATGC 57.737 36.000 0.00 0.00 0.00 4.06
494 495 6.749139 TCCTATGAACACCTTCGAGATATTG 58.251 40.000 0.00 0.00 0.00 1.90
508 509 4.142026 CGTTGACACCCTATCCTATGAACA 60.142 45.833 0.00 0.00 0.00 3.18
510 511 3.181469 GCGTTGACACCCTATCCTATGAA 60.181 47.826 0.00 0.00 0.00 2.57
528 529 3.743911 TCATTTCTATGAACACACGCGTT 59.256 39.130 10.22 0.00 37.83 4.84
530 531 3.989705 TCATTTCTATGAACACACGCG 57.010 42.857 3.53 3.53 37.83 6.01
545 546 7.998580 TCACATACATGCACATACAATCATTT 58.001 30.769 0.00 0.00 0.00 2.32
592 1061 3.308866 GTGTATGCGGTGTGGTAGATTTC 59.691 47.826 0.00 0.00 0.00 2.17
596 1065 1.258676 TGTGTATGCGGTGTGGTAGA 58.741 50.000 0.00 0.00 0.00 2.59
598 1067 1.276705 ACATGTGTATGCGGTGTGGTA 59.723 47.619 0.00 0.00 37.85 3.25
599 1068 0.036164 ACATGTGTATGCGGTGTGGT 59.964 50.000 0.00 0.00 37.85 4.16
601 1070 2.603110 GAGTACATGTGTATGCGGTGTG 59.397 50.000 9.11 0.00 37.85 3.82
602 1071 2.418197 GGAGTACATGTGTATGCGGTGT 60.418 50.000 9.11 0.00 37.85 4.16
603 1072 2.201732 GGAGTACATGTGTATGCGGTG 58.798 52.381 9.11 0.00 37.85 4.94
688 2298 8.641499 ACTTGCTGAAAAATTGATAAAAACGA 57.359 26.923 0.00 0.00 0.00 3.85
699 2309 6.230472 GTTGGGGAATACTTGCTGAAAAATT 58.770 36.000 0.00 0.00 0.00 1.82
700 2310 5.566627 CGTTGGGGAATACTTGCTGAAAAAT 60.567 40.000 0.00 0.00 0.00 1.82
773 3356 7.335422 CAGCATACTAGGAATCAAAGTCTTTGT 59.665 37.037 21.81 6.67 41.36 2.83
795 3378 7.069208 CAGGCTTATGATATAGAGATACCAGCA 59.931 40.741 0.00 0.00 0.00 4.41
796 3379 7.286546 TCAGGCTTATGATATAGAGATACCAGC 59.713 40.741 0.00 0.00 0.00 4.85
799 3382 9.810545 GTTTCAGGCTTATGATATAGAGATACC 57.189 37.037 0.00 0.00 0.00 2.73
809 3392 5.186256 TGTTGGGTTTCAGGCTTATGATA 57.814 39.130 0.00 0.00 0.00 2.15
926 3554 0.749818 TTTCGAACTTGTGGCAGCCA 60.750 50.000 11.22 11.22 0.00 4.75
993 3621 5.829924 ACATAAGAGGATCGCCATGAAATTT 59.170 36.000 0.00 0.00 42.67 1.82
1012 3640 5.830991 AGGCTTTGGAAGTAACACAACATAA 59.169 36.000 0.00 0.00 0.00 1.90
1016 3644 4.359706 CAAGGCTTTGGAAGTAACACAAC 58.640 43.478 0.00 0.00 0.00 3.32
1149 3777 0.821517 TTGCTCTTCTTATCGGCGGA 59.178 50.000 7.21 0.00 0.00 5.54
1194 3824 5.342017 TCCCAAGAACAAGATTAGAGAGGA 58.658 41.667 0.00 0.00 0.00 3.71
1222 3854 2.884639 GGGTGGGGAAATGATATGTTCG 59.115 50.000 0.00 0.00 0.00 3.95
1269 3901 6.454795 TGATATATGCTAGTTCATGCGTGAA 58.545 36.000 17.41 17.41 41.89 3.18
1319 3951 1.073964 ACGCATGCTATCATCGATGC 58.926 50.000 20.81 9.50 38.26 3.91
1341 3973 7.041098 ACCATGAAGTTTGTTGATACTTCTCAC 60.041 37.037 14.00 0.00 46.55 3.51
1401 4047 1.078426 CCGACGGCTGGGATTCTTT 60.078 57.895 0.00 0.00 0.00 2.52
1485 4133 2.024319 GTGCGACTGGTCTGCACTC 61.024 63.158 26.46 13.24 46.29 3.51
1505 4153 2.723124 ATTGATGAAACACGGGCAAC 57.277 45.000 0.00 0.00 0.00 4.17
1564 4217 3.286751 CACCAACCAGCCACGTGG 61.287 66.667 30.66 30.66 44.01 4.94
1574 4227 1.269778 GCAAGAAAGAAGGCACCAACC 60.270 52.381 0.00 0.00 0.00 3.77
1660 4313 6.136071 GCACGCCAAGATATTAACATGTTAG 58.864 40.000 17.36 5.76 0.00 2.34
1763 4419 1.479709 CCACCTTCTCGACCATCTCT 58.520 55.000 0.00 0.00 0.00 3.10
1784 4440 3.832720 GATTCTCTCCGCCGCCTCG 62.833 68.421 0.00 0.00 0.00 4.63
1822 4478 1.611491 GTCTTTCATTGCCGGGAAACA 59.389 47.619 14.07 0.00 0.00 2.83
1832 4488 4.615452 GCTGCCTTCTTGAGTCTTTCATTG 60.615 45.833 0.00 0.00 35.27 2.82
1929 4586 0.106519 AGTTGGCAGTTGACTTGGCT 60.107 50.000 0.61 0.00 0.00 4.75
1999 4657 2.080693 ACTGCCATAATTTGAACGCGA 58.919 42.857 15.93 0.00 0.00 5.87
2057 4736 0.030638 ATGAACAACAGGCAACGTGC 59.969 50.000 0.00 0.00 44.08 5.34
2123 4803 4.778213 TGCCCTAACATGCTTATCTCTT 57.222 40.909 0.00 0.00 0.00 2.85
2131 4811 1.216064 TGGAGATGCCCTAACATGCT 58.784 50.000 0.00 0.00 34.97 3.79
2187 4869 1.471676 GCGGACAGATCTTCATCGGTT 60.472 52.381 0.00 0.00 37.54 4.44
2431 5133 0.329931 TTGGACATATGTGGGCGGTT 59.670 50.000 14.43 0.00 0.00 4.44
2433 5135 1.238439 GATTGGACATATGTGGGCGG 58.762 55.000 14.43 0.00 0.00 6.13
2435 5137 4.942761 ATTTGATTGGACATATGTGGGC 57.057 40.909 14.43 0.00 0.00 5.36
2436 5138 7.452501 AGGAATATTTGATTGGACATATGTGGG 59.547 37.037 14.43 0.00 0.00 4.61
2442 5146 8.837099 ACCAAAGGAATATTTGATTGGACATA 57.163 30.769 23.15 0.00 41.71 2.29
2531 5235 7.038659 CCTATCGAACTTTCAGAACAGAATCT 58.961 38.462 0.00 0.00 0.00 2.40
2682 5410 4.276926 AGTTCTCCAGACTCATTTTGCAAC 59.723 41.667 0.00 0.00 0.00 4.17
2752 5480 4.249661 TGGTCAAAAAGGTTTCACTTTGC 58.750 39.130 0.00 0.00 40.36 3.68
2810 5542 5.263968 TCTGATTGACGGTATCTTCTTCC 57.736 43.478 0.00 0.00 0.00 3.46
2857 5591 7.847096 TCTCCTTGCAACTATACTGTCATTTA 58.153 34.615 0.00 0.00 0.00 1.40
2934 5675 2.936993 GCCCGAGTCTGACAATGACATT 60.937 50.000 10.88 0.00 36.94 2.71
3008 5751 5.859205 ATTAAGAAGCCCACCATCATTTC 57.141 39.130 0.00 0.00 0.00 2.17
3062 5805 1.361204 TGGAGATGGAAGAACTGCCA 58.639 50.000 3.80 3.80 38.78 4.92
3093 5836 2.616510 CCAGGTTTGCTCGGATCTCTTT 60.617 50.000 0.00 0.00 0.00 2.52
3119 5862 2.224523 TGGCAATGTCCGAAGAAAGAGT 60.225 45.455 0.00 0.00 0.00 3.24
3175 5921 5.305585 TCAGTGTTTGGACCTCAATACTTC 58.694 41.667 4.35 0.00 33.65 3.01
3305 6977 2.817834 GAAGTGCACGGCCGCATA 60.818 61.111 28.58 8.64 45.26 3.14
3372 7049 3.782046 CGTTCGGTCCTTTGATGACTAT 58.218 45.455 0.00 0.00 33.22 2.12
3445 7123 4.902448 CGATGCTCTATTCGCAGAAAATTG 59.098 41.667 0.00 0.00 45.90 2.32
3581 7261 0.828022 TAGGTGGTCCTTGCATACGG 59.172 55.000 0.00 0.00 42.12 4.02
3585 7265 2.041620 ACAATGTAGGTGGTCCTTGCAT 59.958 45.455 0.00 0.00 42.12 3.96
3614 7294 0.818296 GCAGAGGACTACACGGATGT 59.182 55.000 0.00 0.00 43.30 3.06
3643 7323 1.464734 ACACTGAGTCGTCCGATGAT 58.535 50.000 0.00 0.00 0.00 2.45
3722 7431 3.056179 CCACACCTGAAAAGTGTTTGGTT 60.056 43.478 0.00 0.00 46.07 3.67
3734 7443 0.677288 CGGTAGTCACCACACCTGAA 59.323 55.000 0.00 0.00 46.14 3.02
3806 7515 0.770499 TCCATGTTGCTTGTCCTCCA 59.230 50.000 0.00 0.00 0.00 3.86
3837 7548 1.668101 GACCTCCGCGAGATCCACTT 61.668 60.000 8.23 0.00 0.00 3.16
3928 7640 3.593442 TCCTTCCCTCTTTCTTTGCAA 57.407 42.857 0.00 0.00 0.00 4.08
3933 7645 3.779738 CTCTCCATCCTTCCCTCTTTCTT 59.220 47.826 0.00 0.00 0.00 2.52
3970 7683 1.490574 CCAAAGTCCCACCCAAAACA 58.509 50.000 0.00 0.00 0.00 2.83
3996 7709 1.077805 TAGAACTCCGACAGCCCCA 59.922 57.895 0.00 0.00 0.00 4.96
4001 7714 0.456312 GCCACGTAGAACTCCGACAG 60.456 60.000 0.00 0.00 0.00 3.51
4048 7762 3.807622 TCCGCAAGTCAGAAACAAACTAG 59.192 43.478 0.00 0.00 0.00 2.57
4082 7796 0.392706 CCATCCATCGACCGATCCAA 59.607 55.000 1.46 0.00 31.62 3.53
4110 7824 1.255882 TCTTTTGCCATCCAACGCAT 58.744 45.000 0.00 0.00 34.35 4.73
4111 7825 1.067706 CATCTTTTGCCATCCAACGCA 60.068 47.619 0.00 0.00 31.97 5.24
4182 7896 2.476619 CGATATGGTTTAAGAGCGCCTG 59.523 50.000 2.29 0.00 0.00 4.85
4186 7900 4.547532 AGTAGCGATATGGTTTAAGAGCG 58.452 43.478 0.00 0.00 0.00 5.03
4189 7903 5.522460 GCACAAGTAGCGATATGGTTTAAGA 59.478 40.000 0.00 0.00 0.00 2.10
4198 7912 2.430694 TGTCCTGCACAAGTAGCGATAT 59.569 45.455 0.00 0.00 33.85 1.63
4213 7927 7.826260 AACTTTTTACATTGTTTGTGTCCTG 57.174 32.000 0.00 0.00 39.48 3.86
4235 7949 4.521256 TCACTGGTATTGCAAGGGTTTAAC 59.479 41.667 4.94 0.00 0.00 2.01
4236 7950 4.521256 GTCACTGGTATTGCAAGGGTTTAA 59.479 41.667 4.94 0.00 0.00 1.52
4237 7951 4.076394 GTCACTGGTATTGCAAGGGTTTA 58.924 43.478 4.94 0.00 0.00 2.01
4238 7952 2.890945 GTCACTGGTATTGCAAGGGTTT 59.109 45.455 4.94 0.00 0.00 3.27
4267 7989 5.642063 GGTTGTAGAAAGGATGAAACATCGA 59.358 40.000 0.00 0.00 0.00 3.59
4292 8014 3.319689 CGTGGTGTTGGGAAAGGTATTTT 59.680 43.478 0.00 0.00 0.00 1.82
4330 8052 1.504900 CGGAGTCGGTCGATCAACA 59.495 57.895 0.00 0.00 0.00 3.33
4331 8053 4.379221 CGGAGTCGGTCGATCAAC 57.621 61.111 0.00 0.00 0.00 3.18
4370 8092 0.739462 GACGACATCGATGGTGGCAA 60.739 55.000 28.09 0.00 43.02 4.52
4390 8112 5.674525 ACCAATGACGATGTAGATTGTGAT 58.325 37.500 0.00 0.00 0.00 3.06
4422 8144 6.215431 TGGGATATTCTCCTTCTGAAGACAAA 59.785 38.462 18.68 9.32 44.28 2.83
4430 8152 5.933617 TGTCAATGGGATATTCTCCTTCTG 58.066 41.667 0.00 0.00 44.28 3.02
4440 8162 3.290710 GGCACACTTGTCAATGGGATAT 58.709 45.455 2.56 0.00 0.00 1.63
4489 8215 6.252995 TGATTTTGTAGCTCCCAATAAACCT 58.747 36.000 0.00 0.00 0.00 3.50
4491 8217 6.036470 GCTGATTTTGTAGCTCCCAATAAAC 58.964 40.000 0.00 0.00 36.99 2.01
4525 8251 0.965439 TCGCAAAGAAAATGTGGGGG 59.035 50.000 0.00 0.00 0.00 5.40
4609 8335 9.091784 CGATATATCAAAGGACCAATATGTCAG 57.908 37.037 13.11 0.00 36.97 3.51
4611 8337 9.088512 GTCGATATATCAAAGGACCAATATGTC 57.911 37.037 13.11 0.00 34.42 3.06
4626 8352 5.393135 GGAGGAAAGCGATGTCGATATATCA 60.393 44.000 13.11 0.00 43.02 2.15
4638 8364 0.107945 GAGTGCAGGAGGAAAGCGAT 60.108 55.000 0.00 0.00 0.00 4.58
4668 8394 1.016130 ATCAAGCCTTGCTCACGACG 61.016 55.000 0.00 0.00 38.25 5.12
4698 8424 6.825610 AGATCTGAAGGTGTTTCATAGATCC 58.174 40.000 0.00 0.00 44.48 3.36
4721 8447 3.270877 GTTGCATCAGGTGTTACCCTAG 58.729 50.000 0.00 0.00 39.75 3.02
4759 8489 0.460987 CGGCTTCTTCGAGCTCCAAT 60.461 55.000 8.47 0.00 42.32 3.16
4786 8516 4.713824 ACGACGATTTATCCTCAGTTCA 57.286 40.909 0.00 0.00 0.00 3.18
4803 8534 5.227908 TGTCACTTTATTCTCTGGAACGAC 58.772 41.667 0.00 0.00 33.96 4.34
4817 8548 3.050089 TCCAACCCTCCTTGTCACTTTA 58.950 45.455 0.00 0.00 0.00 1.85
4824 8555 3.821306 GTTGTCCAACCCTCCTTGT 57.179 52.632 0.00 0.00 35.36 3.16
4862 8593 4.098044 CGAGGTTATGGCTCTCAAGTTCTA 59.902 45.833 0.00 0.00 0.00 2.10
4871 8602 1.757699 GGTCTTCGAGGTTATGGCTCT 59.242 52.381 0.00 0.00 0.00 4.09
4875 8606 1.831736 AGGTGGTCTTCGAGGTTATGG 59.168 52.381 0.00 0.00 0.00 2.74
4903 8634 2.512476 GGGGCCCCTTTTTCTGTCTATA 59.488 50.000 35.49 0.00 0.00 1.31
4915 8646 4.079961 GCCAGATTGGGGCCCCTT 62.080 66.667 40.66 28.26 45.87 3.95
4957 8688 3.600388 CTCTAATCCAGGACACCAACAC 58.400 50.000 0.00 0.00 0.00 3.32
4977 8708 4.988598 CCGACGTGGCAAGCACCT 62.989 66.667 0.00 0.00 0.00 4.00
5000 8732 1.002659 CATCGGCCCGACCCATAATTA 59.997 52.381 8.62 0.00 39.18 1.40
5064 8796 5.069648 AGAGATCTTCATCTTGATTACGCCA 59.930 40.000 0.00 0.00 39.71 5.69
5088 8820 1.302192 GTGTACGCCAAGCCTCCAA 60.302 57.895 0.00 0.00 0.00 3.53
5109 8841 6.403527 GCATGCCGATCATACAAATATGCTTA 60.404 38.462 6.36 0.00 38.50 3.09
5121 8853 5.888161 TCTAGAGATAAGCATGCCGATCATA 59.112 40.000 24.04 17.01 33.19 2.15
5140 8872 4.464951 ACACATGGTCGGTTACAATCTAGA 59.535 41.667 0.00 0.00 0.00 2.43
5179 8911 4.998672 GTGCCTCTATAGACTAGACGACAT 59.001 45.833 0.00 0.00 0.00 3.06
5186 8935 4.152045 CGTAACCGTGCCTCTATAGACTAG 59.848 50.000 0.00 0.00 0.00 2.57
5204 8953 6.145048 TGTTCTAAGCTCTAAAACTGCGTAAC 59.855 38.462 0.00 0.00 0.00 2.50
5258 9007 7.220740 TGATTGTGATGGAGTACAAAGTACAA 58.779 34.615 9.68 0.12 39.89 2.41
5285 9034 5.309806 ACCCTATGTCCCGCTTCTTATATTT 59.690 40.000 0.00 0.00 0.00 1.40
5286 9035 4.844655 ACCCTATGTCCCGCTTCTTATATT 59.155 41.667 0.00 0.00 0.00 1.28
5297 9046 2.502538 TGAGGTAAAACCCTATGTCCCG 59.497 50.000 0.00 0.00 39.75 5.14
5376 9145 1.000041 AGATCTCGGGTAGGGGGTCT 61.000 60.000 0.00 0.00 0.00 3.85
5540 9309 2.280103 TGGAGTCTGGGTCTCTCTAGT 58.720 52.381 0.00 0.00 33.06 2.57
5547 9316 2.630889 TGATCTTGGAGTCTGGGTCT 57.369 50.000 0.00 0.00 0.00 3.85
5597 9367 5.425217 TCATCATCTCTAGGTGCCTTACAAA 59.575 40.000 0.00 0.00 0.00 2.83
5598 9368 4.962362 TCATCATCTCTAGGTGCCTTACAA 59.038 41.667 0.00 0.00 0.00 2.41
5616 9386 3.544684 GTGTCCCATGTAGCAATCATCA 58.455 45.455 0.00 0.00 0.00 3.07
5680 9450 5.010213 AGTGGAGCTCTACCGATATTTTCTC 59.990 44.000 24.93 0.00 0.00 2.87
5734 9504 5.916661 TTGGTAGAGGTTAGCACTTAGAG 57.083 43.478 0.00 0.00 0.00 2.43
5766 9536 1.304134 GGGGCTTAAGGTGTGGTGG 60.304 63.158 4.29 0.00 0.00 4.61
5813 9583 0.696501 GGGGTTAGGTGAGCTTTGGA 59.303 55.000 0.00 0.00 0.00 3.53
5845 9615 0.868406 CGACAACAGGGTCAAAGAGC 59.132 55.000 0.00 0.00 37.66 4.09
5859 9629 5.724328 AGATAACAGAGAGAAATGCGACAA 58.276 37.500 0.00 0.00 0.00 3.18
5896 9667 3.529734 AGAGGTGATGGAGAGAAGTAGGA 59.470 47.826 0.00 0.00 0.00 2.94
5925 9696 0.036306 GAGGGAAAGGAAGCCGACAA 59.964 55.000 0.00 0.00 0.00 3.18
5960 9731 2.569354 GGGACAATGTTTGCGGCCA 61.569 57.895 2.24 0.00 0.00 5.36
5961 9732 2.261361 GGGACAATGTTTGCGGCC 59.739 61.111 0.00 0.00 0.00 6.13
5977 9748 4.631813 CGTACAAAAGAGAAGATGAAGGGG 59.368 45.833 0.00 0.00 0.00 4.79
5981 9752 7.201410 GCGATTACGTACAAAAGAGAAGATGAA 60.201 37.037 0.00 0.00 41.98 2.57
5999 9770 0.744874 TGAGGAGGAAGGCGATTACG 59.255 55.000 0.00 0.00 42.93 3.18
6107 9880 7.903481 AGATGCTCTTATTTGATAGGGGAGATA 59.097 37.037 0.00 0.00 0.00 1.98
6273 11526 9.936759 CTATTTTTACTGAGAGTTCCTCTTCTT 57.063 33.333 0.00 0.00 41.35 2.52
6313 11566 4.693915 TGTTGGGGAGGGGAGGGG 62.694 72.222 0.00 0.00 0.00 4.79
6315 11568 2.531685 TGTGTTGGGGAGGGGAGG 60.532 66.667 0.00 0.00 0.00 4.30
6316 11569 2.153401 TGTGTGTTGGGGAGGGGAG 61.153 63.158 0.00 0.00 0.00 4.30
6317 11570 2.039298 TGTGTGTTGGGGAGGGGA 60.039 61.111 0.00 0.00 0.00 4.81
6318 11571 2.115266 GTGTGTGTTGGGGAGGGG 59.885 66.667 0.00 0.00 0.00 4.79
6319 11572 2.281484 CGTGTGTGTTGGGGAGGG 60.281 66.667 0.00 0.00 0.00 4.30
6320 11573 2.978010 GCGTGTGTGTTGGGGAGG 60.978 66.667 0.00 0.00 0.00 4.30
6321 11574 2.978010 GGCGTGTGTGTTGGGGAG 60.978 66.667 0.00 0.00 0.00 4.30
6322 11575 2.838748 TTTGGCGTGTGTGTTGGGGA 62.839 55.000 0.00 0.00 0.00 4.81
6360 11613 2.184020 TTGGCTGGCGCACTATGAGT 62.184 55.000 10.83 0.00 38.10 3.41
6361 11614 0.816825 ATTGGCTGGCGCACTATGAG 60.817 55.000 10.83 0.00 38.10 2.90
6368 11900 2.911509 AACACATTGGCTGGCGCA 60.912 55.556 10.83 0.00 38.10 6.09
6401 11937 5.128171 AGCCAGTGTCGATTTATAACCTGTA 59.872 40.000 0.00 0.00 0.00 2.74
6404 11940 4.406003 AGAGCCAGTGTCGATTTATAACCT 59.594 41.667 0.00 0.00 0.00 3.50
6438 11974 2.760385 GTGGCGGCTAGGGAGTCT 60.760 66.667 11.43 0.00 0.00 3.24
6439 11975 3.851128 GGTGGCGGCTAGGGAGTC 61.851 72.222 11.43 0.00 0.00 3.36
6491 12027 2.658707 GCTCGAATACGGCGATGGC 61.659 63.158 16.62 3.96 40.21 4.40
6551 12087 1.494721 ACAATATCCCGAGGGTGCAAT 59.505 47.619 8.20 0.00 36.47 3.56
6628 12164 3.255888 GTCATATATGTGCGGTCCTCTGA 59.744 47.826 12.42 0.00 0.00 3.27
6682 12218 1.787058 TCCCTCCTCCAAGATCGGATA 59.213 52.381 0.00 0.00 33.56 2.59
6692 12228 0.614979 CGTTCTCCTTCCCTCCTCCA 60.615 60.000 0.00 0.00 0.00 3.86
6702 12238 4.023980 TCCATACTGTCATCGTTCTCCTT 58.976 43.478 0.00 0.00 0.00 3.36
6756 12292 1.953138 CGTCCATGCCGATGAGCTC 60.953 63.158 6.82 6.82 0.00 4.09
6759 12295 2.280389 CCCGTCCATGCCGATGAG 60.280 66.667 4.76 0.00 0.00 2.90
6772 12308 1.303317 GTGTTGGATTGCTCCCCGT 60.303 57.895 0.00 0.00 41.29 5.28
6783 12319 1.752198 CCTCCTCCGTTGTGTTGGA 59.248 57.895 0.00 0.00 0.00 3.53
6790 12326 2.982130 CTCCACCCTCCTCCGTTG 59.018 66.667 0.00 0.00 0.00 4.10
6791 12327 3.003763 GCTCCACCCTCCTCCGTT 61.004 66.667 0.00 0.00 0.00 4.44
6809 12345 0.747283 CACAAGAGGAGGCAGATGGC 60.747 60.000 0.00 0.00 43.74 4.40
6810 12346 0.107312 CCACAAGAGGAGGCAGATGG 60.107 60.000 0.00 0.00 0.00 3.51
6815 12351 3.811702 CTCCCACAAGAGGAGGCA 58.188 61.111 0.00 0.00 46.14 4.75
6845 12381 3.792736 GAGGGCGGCATGGTACCA 61.793 66.667 18.99 18.99 0.00 3.25
6846 12382 4.910585 CGAGGGCGGCATGGTACC 62.911 72.222 12.47 4.43 0.00 3.34
6873 12409 0.108186 CTCCGCTGTATGGTGCTTCA 60.108 55.000 0.00 0.00 0.00 3.02
6894 12430 1.933181 CACACTTGACTTCGACTTGCA 59.067 47.619 0.00 0.00 0.00 4.08
6935 12471 1.003696 GTCTAGGTTGGCAAGGAGCTT 59.996 52.381 0.00 0.00 44.79 3.74
6970 12506 0.750249 CAAACCCAAGGTTGGTGTCC 59.250 55.000 7.96 0.00 46.20 4.02
6972 12508 3.701800 ACAAACCCAAGGTTGGTGT 57.298 47.368 5.72 2.19 46.91 4.16
7029 12565 3.706183 TGTCATCAGAGTCAGAGTCCAT 58.294 45.455 1.19 0.00 0.00 3.41
7068 12604 1.315257 GGTCTTGTGGCATTGGCGAT 61.315 55.000 5.68 0.00 42.47 4.58
7123 12660 7.973048 AATAAACTACCACTACTCCTCATCA 57.027 36.000 0.00 0.00 0.00 3.07
7126 12663 9.710818 AGATAAATAAACTACCACTACTCCTCA 57.289 33.333 0.00 0.00 0.00 3.86
7262 12799 2.977808 ACCCCATCTATGACCCACTAG 58.022 52.381 0.00 0.00 0.00 2.57
7264 12801 1.846439 CAACCCCATCTATGACCCACT 59.154 52.381 0.00 0.00 0.00 4.00
7315 12852 3.390639 TCAAATGCCAGTCAACCCAAAAT 59.609 39.130 0.00 0.00 0.00 1.82
7323 12860 1.630223 TGCCATCAAATGCCAGTCAA 58.370 45.000 0.00 0.00 0.00 3.18
7378 12915 3.069016 ACGTCTTCACACACAATCACCTA 59.931 43.478 0.00 0.00 0.00 3.08
7446 12984 6.788218 TCTTCCTCTATCTCATCTATCTGCA 58.212 40.000 0.00 0.00 0.00 4.41
7480 13018 6.395426 TTCTTCGTAAAAGACTCCACTACA 57.605 37.500 0.00 0.00 0.00 2.74
7616 13155 7.205737 ACCATGCAAAGAAAATTGGAATTTC 57.794 32.000 5.74 0.00 37.62 2.17
7676 13215 5.366186 AGCTACTCAGATGTCCAAATGATCT 59.634 40.000 0.00 0.00 0.00 2.75
7737 13415 9.559958 CAAATTAGGTCAGAACAATACATGAAC 57.440 33.333 0.00 0.00 0.00 3.18
7754 13432 9.541884 ACCAACCATAAAATAGACAAATTAGGT 57.458 29.630 0.00 0.00 0.00 3.08
7767 13445 4.145807 TGACCGTCAACCAACCATAAAAT 58.854 39.130 0.00 0.00 0.00 1.82
7801 14023 6.725364 CCTCTAGGGCATATTTCCAACATAT 58.275 40.000 0.00 0.00 0.00 1.78
7905 14128 5.523916 GTCTCACATACAAGTCACACACTTT 59.476 40.000 0.00 0.00 43.38 2.66
7934 14157 9.016438 GGACCTTTTAGAAAACACCATACAATA 57.984 33.333 0.00 0.00 0.00 1.90
7947 14172 7.243824 TCTACTGACTAGGGACCTTTTAGAAA 58.756 38.462 0.00 0.00 0.00 2.52
7996 14221 6.150396 ACTATGTTGTATGACAGTCTAGCC 57.850 41.667 1.31 0.00 32.19 3.93
7997 14222 8.155821 TCTACTATGTTGTATGACAGTCTAGC 57.844 38.462 1.31 0.00 32.19 3.42
8016 14241 5.475220 GCCAGTGAGATCAAGCTATCTACTA 59.525 44.000 0.00 0.00 36.33 1.82
8038 14263 3.760580 AGAATCTAGTGCTACATGGCC 57.239 47.619 0.00 0.00 0.00 5.36
8079 14304 2.403561 GGAGCTAACCTCAGATCCCTT 58.596 52.381 0.00 0.00 43.90 3.95
8091 14316 2.994578 GTTCGGACTTCAAGGAGCTAAC 59.005 50.000 0.00 0.00 0.00 2.34
8093 14318 2.231478 CAGTTCGGACTTCAAGGAGCTA 59.769 50.000 0.00 0.00 32.54 3.32
8113 14338 5.408299 CCGACATGACAAGTTATTTGAGTCA 59.592 40.000 0.00 0.00 42.62 3.41
8120 14346 6.281405 GGTCTATCCGACATGACAAGTTATT 58.719 40.000 0.00 0.00 44.68 1.40
8167 14393 5.123502 GTCGTACTTGAGACTGGTAGATGAA 59.876 44.000 0.00 0.00 34.74 2.57
8175 14401 3.245797 CACATGTCGTACTTGAGACTGG 58.754 50.000 0.00 0.00 38.16 4.00
8176 14402 3.902150 ACACATGTCGTACTTGAGACTG 58.098 45.455 0.00 0.00 38.16 3.51
8234 14461 3.700038 CCTAAGTAGGTTGGTCATCGTCT 59.300 47.826 0.00 0.00 38.69 4.18
8245 14472 0.252375 TGGTCGGCCCTAAGTAGGTT 60.252 55.000 2.12 0.00 42.03 3.50
8260 14487 0.746923 GTTTGGTCGGCCCTATGGTC 60.747 60.000 2.12 0.00 0.00 4.02
8261 14488 1.301954 GTTTGGTCGGCCCTATGGT 59.698 57.895 2.12 0.00 0.00 3.55
8262 14489 1.817941 CGTTTGGTCGGCCCTATGG 60.818 63.158 2.12 0.00 0.00 2.74
8263 14490 2.469516 GCGTTTGGTCGGCCCTATG 61.470 63.158 2.12 0.00 0.00 2.23
8264 14491 1.332144 TAGCGTTTGGTCGGCCCTAT 61.332 55.000 2.12 0.00 0.00 2.57
8265 14492 1.983481 TAGCGTTTGGTCGGCCCTA 60.983 57.895 2.12 0.00 0.00 3.53
8266 14493 3.315949 TAGCGTTTGGTCGGCCCT 61.316 61.111 2.12 0.00 0.00 5.19
8267 14494 3.122971 GTAGCGTTTGGTCGGCCC 61.123 66.667 2.12 0.00 0.00 5.80
8268 14495 2.047560 AGTAGCGTTTGGTCGGCC 60.048 61.111 0.00 0.00 0.00 6.13
8269 14496 2.098831 GGAGTAGCGTTTGGTCGGC 61.099 63.158 0.00 0.00 0.00 5.54
8270 14497 0.108329 ATGGAGTAGCGTTTGGTCGG 60.108 55.000 0.00 0.00 0.00 4.79
8271 14498 1.722011 AATGGAGTAGCGTTTGGTCG 58.278 50.000 0.00 0.00 0.00 4.79
8272 14499 4.873827 TCAATAATGGAGTAGCGTTTGGTC 59.126 41.667 0.00 0.00 0.00 4.02
8288 14515 8.732746 ACCGAACTTTATAACTGCTCAATAAT 57.267 30.769 0.00 0.00 0.00 1.28
8292 14519 6.870971 AAACCGAACTTTATAACTGCTCAA 57.129 33.333 0.00 0.00 0.00 3.02
8310 14537 0.029567 TTTGTACCAGCGCAAAACCG 59.970 50.000 11.47 0.00 32.46 4.44
8349 14576 5.049828 GGGGGCAAATCATTTCTTAATTCG 58.950 41.667 0.00 0.00 0.00 3.34
8353 14580 4.030216 GGAGGGGGCAAATCATTTCTTAA 58.970 43.478 0.00 0.00 0.00 1.85
8394 14621 0.918983 GGATCACATGAGGGGTCCAA 59.081 55.000 0.00 0.00 0.00 3.53
8430 14657 4.922206 ACACTTAATCCATGTCACATGGT 58.078 39.130 31.93 19.01 40.06 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.