Multiple sequence alignment - TraesCS2B01G335100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G335100 chr2B 100.000 2444 0 0 1 2444 478473593 478476036 0.000000e+00 4514
1 TraesCS2B01G335100 chr2B 86.964 606 60 6 1 589 478841033 478841636 0.000000e+00 664
2 TraesCS2B01G335100 chr2B 79.344 518 90 17 740 1249 344162887 344162379 5.000000e-92 348
3 TraesCS2B01G335100 chr2D 87.704 1041 96 17 230 1253 404689165 404688140 0.000000e+00 1184
4 TraesCS2B01G335100 chr2D 88.411 604 45 6 3 589 404410321 404409726 0.000000e+00 704
5 TraesCS2B01G335100 chr2D 90.076 393 36 3 1245 1635 404688115 404687724 7.800000e-140 507
6 TraesCS2B01G335100 chr7D 82.019 1268 185 28 1 1240 196142588 196143840 0.000000e+00 1038
7 TraesCS2B01G335100 chr7D 87.805 451 50 4 1997 2444 197077912 197078360 7.740000e-145 523
8 TraesCS2B01G335100 chr7D 86.534 453 51 7 1998 2444 625501168 625500720 7.850000e-135 490
9 TraesCS2B01G335100 chr3D 86.200 971 109 15 1 951 236629447 236630412 0.000000e+00 1027
10 TraesCS2B01G335100 chr3D 86.455 598 68 10 1 589 236632363 236632956 0.000000e+00 643
11 TraesCS2B01G335100 chr3D 84.767 558 66 8 1 540 319449937 319449381 2.140000e-150 542
12 TraesCS2B01G335100 chr4D 81.926 1267 177 35 1 1239 334664397 334665639 0.000000e+00 1024
13 TraesCS2B01G335100 chr4D 88.341 446 49 3 2000 2444 115637645 115638088 1.290000e-147 532
14 TraesCS2B01G335100 chr4D 86.771 446 56 3 2000 2444 191668833 191668390 6.070000e-136 494
15 TraesCS2B01G335100 chr3A 86.976 906 102 12 1 897 323435343 323434445 0.000000e+00 1005
16 TraesCS2B01G335100 chrUn 84.038 946 136 15 2 938 56685121 56686060 0.000000e+00 896
17 TraesCS2B01G335100 chr3B 82.915 995 142 14 1 974 338529432 338528445 0.000000e+00 870
18 TraesCS2B01G335100 chr3B 86.918 451 53 3 2000 2444 391655199 391655649 3.630000e-138 501
19 TraesCS2B01G335100 chr7B 83.333 948 144 14 1 939 370197065 370196123 0.000000e+00 863
20 TraesCS2B01G335100 chr7B 83.209 935 121 23 1 910 160486299 160487222 0.000000e+00 824
21 TraesCS2B01G335100 chr7B 84.320 676 85 11 1 658 143346960 143347632 2.050000e-180 641
22 TraesCS2B01G335100 chr4B 81.256 1051 166 18 134 1159 286200952 286201996 0.000000e+00 821
23 TraesCS2B01G335100 chr6B 84.680 594 80 11 1 587 348674061 348674650 1.260000e-162 582
24 TraesCS2B01G335100 chr6A 84.353 556 78 8 388 939 223840275 223839725 9.950000e-149 536
25 TraesCS2B01G335100 chr4A 88.053 452 50 4 1996 2444 562668731 562669181 1.290000e-147 532
26 TraesCS2B01G335100 chr5B 87.196 453 48 6 1999 2444 20096572 20096123 7.800000e-140 507
27 TraesCS2B01G335100 chr5B 86.726 452 51 8 2000 2444 182979425 182978976 6.070000e-136 494
28 TraesCS2B01G335100 chr2A 88.112 429 47 3 2016 2442 443652013 443652439 7.800000e-140 507


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G335100 chr2B 478473593 478476036 2443 False 4514.0 4514 100.0000 1 2444 1 chr2B.!!$F1 2443
1 TraesCS2B01G335100 chr2B 478841033 478841636 603 False 664.0 664 86.9640 1 589 1 chr2B.!!$F2 588
2 TraesCS2B01G335100 chr2B 344162379 344162887 508 True 348.0 348 79.3440 740 1249 1 chr2B.!!$R1 509
3 TraesCS2B01G335100 chr2D 404687724 404689165 1441 True 845.5 1184 88.8900 230 1635 2 chr2D.!!$R2 1405
4 TraesCS2B01G335100 chr2D 404409726 404410321 595 True 704.0 704 88.4110 3 589 1 chr2D.!!$R1 586
5 TraesCS2B01G335100 chr7D 196142588 196143840 1252 False 1038.0 1038 82.0190 1 1240 1 chr7D.!!$F1 1239
6 TraesCS2B01G335100 chr3D 236629447 236632956 3509 False 835.0 1027 86.3275 1 951 2 chr3D.!!$F1 950
7 TraesCS2B01G335100 chr3D 319449381 319449937 556 True 542.0 542 84.7670 1 540 1 chr3D.!!$R1 539
8 TraesCS2B01G335100 chr4D 334664397 334665639 1242 False 1024.0 1024 81.9260 1 1239 1 chr4D.!!$F2 1238
9 TraesCS2B01G335100 chr3A 323434445 323435343 898 True 1005.0 1005 86.9760 1 897 1 chr3A.!!$R1 896
10 TraesCS2B01G335100 chrUn 56685121 56686060 939 False 896.0 896 84.0380 2 938 1 chrUn.!!$F1 936
11 TraesCS2B01G335100 chr3B 338528445 338529432 987 True 870.0 870 82.9150 1 974 1 chr3B.!!$R1 973
12 TraesCS2B01G335100 chr7B 370196123 370197065 942 True 863.0 863 83.3330 1 939 1 chr7B.!!$R1 938
13 TraesCS2B01G335100 chr7B 160486299 160487222 923 False 824.0 824 83.2090 1 910 1 chr7B.!!$F2 909
14 TraesCS2B01G335100 chr7B 143346960 143347632 672 False 641.0 641 84.3200 1 658 1 chr7B.!!$F1 657
15 TraesCS2B01G335100 chr4B 286200952 286201996 1044 False 821.0 821 81.2560 134 1159 1 chr4B.!!$F1 1025
16 TraesCS2B01G335100 chr6B 348674061 348674650 589 False 582.0 582 84.6800 1 587 1 chr6B.!!$F1 586
17 TraesCS2B01G335100 chr6A 223839725 223840275 550 True 536.0 536 84.3530 388 939 1 chr6A.!!$R1 551

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
179 184 0.040692 CTCCTTTCGTGTCGTCGACA 60.041 55.0 23.7 23.7 40.5 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1796 1961 0.041312 CGACAACTTGAACTTGCCGG 60.041 55.0 0.0 0.0 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 74 9.758651 GTCATTACATGTATGTGAATAGTGGTA 57.241 33.333 17.92 0.00 41.89 3.25
96 100 4.436113 TGCTATCCAACATAATCCTGCA 57.564 40.909 0.00 0.00 0.00 4.41
179 184 0.040692 CTCCTTTCGTGTCGTCGACA 60.041 55.000 23.70 23.70 40.50 4.35
197 202 6.087522 GTCGACATGTATGAGCCTATCTTAC 58.912 44.000 11.55 0.00 38.46 2.34
247 252 1.066215 AGTTGATCTGCATGCACCGTA 60.066 47.619 18.46 2.81 0.00 4.02
377 390 1.143684 ACTTTCTGGCAAGGAGCTTGA 59.856 47.619 0.00 0.00 43.42 3.02
386 414 2.760374 CAAGGAGCTTGACGAGTCTTT 58.240 47.619 4.78 0.00 43.42 2.52
446 475 6.287589 ACTTAGTACTTCTTGATCACCTGG 57.712 41.667 0.00 0.00 0.00 4.45
589 619 4.969133 AGGACCCCTAATTTAGTACACCT 58.031 43.478 0.00 3.94 28.47 4.00
590 620 5.356575 AGGACCCCTAATTTAGTACACCTT 58.643 41.667 0.00 0.00 28.47 3.50
593 623 7.050377 GGACCCCTAATTTAGTACACCTTTAC 58.950 42.308 0.00 0.00 0.00 2.01
636 668 2.401583 ACGCATGTGAGGCATCTTTA 57.598 45.000 14.43 0.00 35.19 1.85
978 1031 5.364157 GTGTTACTCCTCAATCCTCCACTAT 59.636 44.000 0.00 0.00 0.00 2.12
1079 1134 2.680370 GGAGGGAGGAAATGGCGGT 61.680 63.158 0.00 0.00 0.00 5.68
1098 1153 2.545742 GGTGCTGCGGAAGAACAAAATT 60.546 45.455 0.00 0.00 35.90 1.82
1145 1200 0.602905 GACTTGGTGCAGCGGTACTT 60.603 55.000 11.91 0.00 0.00 2.24
1170 1225 4.995058 TGGGGGAGGGAAACGGCT 62.995 66.667 0.00 0.00 0.00 5.52
1233 1289 2.093447 CAGCGGAGACAAGTATCCCTTT 60.093 50.000 8.19 0.00 37.68 3.11
1250 1306 5.134661 TCCCTTTTTCACCACGTATTTCTT 58.865 37.500 0.00 0.00 0.00 2.52
1266 1355 8.665685 ACGTATTTCTTTTCCAAGATCATGTAC 58.334 33.333 0.00 0.00 38.89 2.90
1269 1358 6.480524 TTCTTTTCCAAGATCATGTACACG 57.519 37.500 0.00 0.00 38.89 4.49
1312 1401 1.901464 ACACCAAACGCCATGACCC 60.901 57.895 0.00 0.00 0.00 4.46
1313 1402 1.603455 CACCAAACGCCATGACCCT 60.603 57.895 0.00 0.00 0.00 4.34
1354 1443 2.028130 TGTGCGAGAATTTTGTTGGGT 58.972 42.857 0.00 0.00 0.00 4.51
1359 1448 3.488489 CGAGAATTTTGTTGGGTTAGCG 58.512 45.455 0.00 0.00 0.00 4.26
1396 1486 0.322997 CCGCCACTATTTTGTCCCCA 60.323 55.000 0.00 0.00 0.00 4.96
1398 1488 1.884497 CGCCACTATTTTGTCCCCACA 60.884 52.381 0.00 0.00 0.00 4.17
1399 1489 1.544246 GCCACTATTTTGTCCCCACAC 59.456 52.381 0.00 0.00 29.76 3.82
1400 1490 2.870175 CCACTATTTTGTCCCCACACA 58.130 47.619 0.00 0.00 29.76 3.72
1401 1491 3.430453 CCACTATTTTGTCCCCACACAT 58.570 45.455 0.00 0.00 29.76 3.21
1402 1492 3.443681 CCACTATTTTGTCCCCACACATC 59.556 47.826 0.00 0.00 29.76 3.06
1403 1493 3.126858 CACTATTTTGTCCCCACACATCG 59.873 47.826 0.00 0.00 29.76 3.84
1413 1503 0.667487 CCACACATCGAAGCAGACGT 60.667 55.000 0.00 0.00 0.00 4.34
1421 1511 1.671742 GAAGCAGACGTCCCTTCCA 59.328 57.895 25.00 0.00 31.16 3.53
1449 1540 1.997874 CTTGGCTCCCTAGGGCTGT 60.998 63.158 24.42 0.00 34.68 4.40
1463 1554 3.339547 GCTGTGCCAAGGAAACCTA 57.660 52.632 0.00 0.00 31.13 3.08
1464 1555 0.881796 GCTGTGCCAAGGAAACCTAC 59.118 55.000 0.00 0.00 31.13 3.18
1465 1556 1.534729 CTGTGCCAAGGAAACCTACC 58.465 55.000 0.00 0.00 31.13 3.18
1468 1559 1.068943 TGCCAAGGAAACCTACCCCA 61.069 55.000 0.00 0.00 31.13 4.96
1472 1563 2.456577 CAAGGAAACCTACCCCAATGG 58.543 52.381 0.00 0.00 33.96 3.16
1479 1570 0.684153 CCTACCCCAATGGCCAACTG 60.684 60.000 10.96 10.72 37.83 3.16
1480 1571 1.304879 TACCCCAATGGCCAACTGC 60.305 57.895 10.96 0.00 37.83 4.40
1485 1576 1.685803 CCCAATGGCCAACTGCATCTA 60.686 52.381 10.96 0.00 43.89 1.98
1487 1578 2.372264 CAATGGCCAACTGCATCTAGT 58.628 47.619 10.96 0.00 43.89 2.57
1507 1598 0.810648 GTGGAATGAATGGCGAGCAA 59.189 50.000 0.00 0.00 0.00 3.91
1510 1601 1.553308 GAATGAATGGCGAGCAAAGC 58.447 50.000 0.00 0.00 0.00 3.51
1535 1626 4.082026 GTGCTGGATAAAAGATGCCAAGTT 60.082 41.667 0.00 0.00 0.00 2.66
1546 1638 5.441718 AGATGCCAAGTTCCAGATTTCTA 57.558 39.130 0.00 0.00 0.00 2.10
1548 1640 4.640771 TGCCAAGTTCCAGATTTCTACT 57.359 40.909 0.00 0.00 0.00 2.57
1555 1647 2.691409 CCAGATTTCTACTGGCCGAA 57.309 50.000 0.00 0.00 46.30 4.30
1577 1695 2.698855 TGAAGAAGGTGGAGCATAGC 57.301 50.000 0.00 0.00 0.00 2.97
1626 1744 1.531149 ACAAGAAACTCACAATCGCCG 59.469 47.619 0.00 0.00 0.00 6.46
1637 1755 0.869880 CAATCGCCGTGACTCGCATA 60.870 55.000 0.00 0.00 38.35 3.14
1639 1757 1.725557 ATCGCCGTGACTCGCATACT 61.726 55.000 0.00 0.00 38.35 2.12
1640 1758 1.516386 CGCCGTGACTCGCATACTT 60.516 57.895 0.00 0.00 38.35 2.24
1643 1761 1.472276 CCGTGACTCGCATACTTCGC 61.472 60.000 0.00 0.00 38.35 4.70
1648 1766 0.101399 ACTCGCATACTTCGCCTCAG 59.899 55.000 0.00 0.00 0.00 3.35
1661 1779 4.200283 CTCAGGGCCGCGAGACTC 62.200 72.222 18.09 0.00 0.00 3.36
1681 1799 2.552093 CCCCCTCTAGGACAAGAGAA 57.448 55.000 0.00 0.00 44.93 2.87
1684 1802 1.760029 CCCTCTAGGACAAGAGAAGGC 59.240 57.143 0.00 0.00 44.93 4.35
1685 1803 1.760029 CCTCTAGGACAAGAGAAGGCC 59.240 57.143 0.00 0.00 44.93 5.19
1687 1805 2.430332 CTCTAGGACAAGAGAAGGCCAG 59.570 54.545 5.01 0.00 44.93 4.85
1688 1806 1.484240 CTAGGACAAGAGAAGGCCAGG 59.516 57.143 5.01 0.00 0.00 4.45
1689 1807 1.377856 GGACAAGAGAAGGCCAGGC 60.378 63.158 5.01 1.26 0.00 4.85
1691 1856 0.905357 GACAAGAGAAGGCCAGGCTA 59.095 55.000 12.43 0.00 0.00 3.93
1695 1860 0.689412 AGAGAAGGCCAGGCTAGGAC 60.689 60.000 12.43 4.17 36.73 3.85
1699 1864 4.375406 GGCCAGGCTAGGACTACA 57.625 61.111 12.43 0.00 32.29 2.74
1705 1870 2.159226 CCAGGCTAGGACTACAAGAACG 60.159 54.545 0.00 0.00 0.00 3.95
1707 1872 1.203994 GGCTAGGACTACAAGAACGCA 59.796 52.381 0.00 0.00 0.00 5.24
1709 1874 2.666994 GCTAGGACTACAAGAACGCAAC 59.333 50.000 0.00 0.00 0.00 4.17
1710 1875 3.614390 GCTAGGACTACAAGAACGCAACT 60.614 47.826 0.00 0.00 0.00 3.16
1711 1876 3.027974 AGGACTACAAGAACGCAACTC 57.972 47.619 0.00 0.00 0.00 3.01
1714 1879 3.120792 GACTACAAGAACGCAACTCACA 58.879 45.455 0.00 0.00 0.00 3.58
1715 1880 3.728845 ACTACAAGAACGCAACTCACAT 58.271 40.909 0.00 0.00 0.00 3.21
1716 1881 3.741344 ACTACAAGAACGCAACTCACATC 59.259 43.478 0.00 0.00 0.00 3.06
1720 1885 3.044235 AGAACGCAACTCACATCATGA 57.956 42.857 0.00 0.00 35.45 3.07
1729 1894 0.176449 TCACATCATGAGGGTGAGCG 59.824 55.000 22.31 4.60 36.69 5.03
1750 1915 2.281484 GGCTCGGCACCAAGTTGA 60.281 61.111 3.87 0.00 0.00 3.18
1761 1926 2.925724 ACCAAGTTGACGGTGATGAAA 58.074 42.857 3.87 0.00 33.05 2.69
1767 1932 4.699637 AGTTGACGGTGATGAAACACTAA 58.300 39.130 0.00 0.00 40.22 2.24
1768 1933 4.750098 AGTTGACGGTGATGAAACACTAAG 59.250 41.667 0.00 0.00 40.22 2.18
1770 1935 4.304110 TGACGGTGATGAAACACTAAGTC 58.696 43.478 0.00 0.00 40.22 3.01
1773 1938 3.927142 CGGTGATGAAACACTAAGTCCTC 59.073 47.826 0.00 0.00 40.22 3.71
1774 1939 4.322049 CGGTGATGAAACACTAAGTCCTCT 60.322 45.833 0.00 0.00 40.22 3.69
1775 1940 4.932200 GGTGATGAAACACTAAGTCCTCTG 59.068 45.833 0.00 0.00 40.22 3.35
1776 1941 4.390297 GTGATGAAACACTAAGTCCTCTGC 59.610 45.833 0.00 0.00 37.73 4.26
1777 1942 3.402628 TGAAACACTAAGTCCTCTGCC 57.597 47.619 0.00 0.00 0.00 4.85
1778 1943 2.703536 TGAAACACTAAGTCCTCTGCCA 59.296 45.455 0.00 0.00 0.00 4.92
1779 1944 2.841442 AACACTAAGTCCTCTGCCAC 57.159 50.000 0.00 0.00 0.00 5.01
1789 1954 1.078567 CTCTGCCACCAGCTCTTCC 60.079 63.158 0.00 0.00 44.23 3.46
1790 1955 2.435586 CTGCCACCAGCTCTTCCG 60.436 66.667 0.00 0.00 44.23 4.30
1794 1959 2.328099 CCACCAGCTCTTCCGCAAC 61.328 63.158 0.00 0.00 0.00 4.17
1795 1960 1.597854 CACCAGCTCTTCCGCAACA 60.598 57.895 0.00 0.00 0.00 3.33
1796 1961 1.598130 ACCAGCTCTTCCGCAACAC 60.598 57.895 0.00 0.00 0.00 3.32
1798 1963 2.357517 AGCTCTTCCGCAACACCG 60.358 61.111 0.00 0.00 0.00 4.94
1807 1972 2.829206 CGCAACACCGGCAAGTTCA 61.829 57.895 0.00 0.00 0.00 3.18
1808 1973 1.435515 GCAACACCGGCAAGTTCAA 59.564 52.632 0.00 0.00 0.00 2.69
1809 1974 0.594796 GCAACACCGGCAAGTTCAAG 60.595 55.000 0.00 0.00 0.00 3.02
1813 1978 0.738389 CACCGGCAAGTTCAAGTTGT 59.262 50.000 0.00 0.00 31.33 3.32
1817 1982 0.317854 GGCAAGTTCAAGTTGTCGGC 60.318 55.000 6.82 7.19 31.33 5.54
1819 1984 1.597937 GCAAGTTCAAGTTGTCGGCAG 60.598 52.381 6.82 0.00 31.33 4.85
1820 1985 1.002468 CAAGTTCAAGTTGTCGGCAGG 60.002 52.381 2.11 0.00 0.00 4.85
1827 1992 4.263572 TTGTCGGCAGGGGTGGTG 62.264 66.667 0.00 0.00 0.00 4.17
1833 1998 3.305516 GCAGGGGTGGTGCCTTTG 61.306 66.667 0.00 0.00 37.43 2.77
1854 2019 4.756084 GTGCAACAACTCTGCTAAGAAT 57.244 40.909 0.00 0.00 40.59 2.40
1856 2021 3.058016 TGCAACAACTCTGCTAAGAATGC 60.058 43.478 0.00 0.00 40.59 3.56
1857 2022 3.671702 GCAACAACTCTGCTAAGAATGCC 60.672 47.826 0.00 0.00 36.84 4.40
1860 2025 5.102953 ACAACTCTGCTAAGAATGCCATA 57.897 39.130 0.00 0.00 30.03 2.74
1861 2026 5.500234 ACAACTCTGCTAAGAATGCCATAA 58.500 37.500 0.00 0.00 30.03 1.90
1865 2030 7.308450 ACTCTGCTAAGAATGCCATAATAGA 57.692 36.000 0.00 0.00 30.03 1.98
1866 2031 7.739825 ACTCTGCTAAGAATGCCATAATAGAA 58.260 34.615 0.00 0.00 30.03 2.10
1868 2033 9.228949 CTCTGCTAAGAATGCCATAATAGAAAT 57.771 33.333 0.00 0.00 30.03 2.17
1875 2040 6.952358 AGAATGCCATAATAGAAATGATGCCT 59.048 34.615 0.00 0.00 0.00 4.75
1878 2043 5.474532 TGCCATAATAGAAATGATGCCTGAC 59.525 40.000 0.00 0.00 0.00 3.51
1884 2049 3.362706 AGAAATGATGCCTGACTGCAAT 58.637 40.909 0.00 0.00 45.84 3.56
1888 2053 2.012902 GATGCCTGACTGCAATGCCC 62.013 60.000 1.53 0.00 45.84 5.36
1892 2057 2.672651 TGACTGCAATGCCCACGG 60.673 61.111 1.53 0.00 0.00 4.94
1893 2058 2.672996 GACTGCAATGCCCACGGT 60.673 61.111 1.53 0.00 0.00 4.83
1898 2069 2.049248 CAATGCCCACGGTGTTGC 60.049 61.111 7.45 9.86 0.00 4.17
1905 2076 4.619227 CACGGTGTTGCGGGGTCT 62.619 66.667 0.00 0.00 0.00 3.85
1909 2080 2.983592 GTGTTGCGGGGTCTTGGG 60.984 66.667 0.00 0.00 0.00 4.12
1910 2081 3.172106 TGTTGCGGGGTCTTGGGA 61.172 61.111 0.00 0.00 0.00 4.37
1912 2083 1.304134 GTTGCGGGGTCTTGGGAAT 60.304 57.895 0.00 0.00 0.00 3.01
1914 2085 0.699399 TTGCGGGGTCTTGGGAATAA 59.301 50.000 0.00 0.00 0.00 1.40
1917 2088 0.463116 CGGGGTCTTGGGAATAACCG 60.463 60.000 0.00 0.00 40.11 4.44
1918 2089 0.750546 GGGGTCTTGGGAATAACCGC 60.751 60.000 0.00 0.00 40.11 5.68
1925 2096 1.523524 GGGAATAACCGCCCGAAGA 59.476 57.895 0.00 0.00 40.11 2.87
1926 2097 0.812811 GGGAATAACCGCCCGAAGAC 60.813 60.000 0.00 0.00 40.11 3.01
1928 2099 0.459063 GAATAACCGCCCGAAGACGT 60.459 55.000 0.00 0.00 37.88 4.34
1933 2104 4.351938 CGCCCGAAGACGTGGTGA 62.352 66.667 0.00 0.00 40.23 4.02
1937 2108 1.219522 CCCGAAGACGTGGTGAACAC 61.220 60.000 0.00 0.00 46.78 3.32
1951 2122 0.872388 GAACACATGGTTCGACACCC 59.128 55.000 12.35 1.92 46.68 4.61
1954 2125 0.955428 CACATGGTTCGACACCCTGG 60.955 60.000 18.63 10.17 46.68 4.45
1955 2126 1.374947 CATGGTTCGACACCCTGGT 59.625 57.895 12.35 0.00 46.68 4.00
1965 2136 2.936032 ACCCTGGTGGAGAAGGCC 60.936 66.667 0.00 0.00 38.00 5.19
1966 2137 2.935481 CCCTGGTGGAGAAGGCCA 60.935 66.667 5.01 0.00 35.39 5.36
1969 2140 1.565390 CCTGGTGGAGAAGGCCATCA 61.565 60.000 11.19 0.00 46.46 3.07
1973 2144 1.082766 TGGAGAAGGCCATCAGGGA 59.917 57.895 11.19 0.00 40.01 4.20
1980 2151 0.693767 AGGCCATCAGGGAGGAGAAG 60.694 60.000 5.01 0.00 40.01 2.85
1984 2155 1.127343 CATCAGGGAGGAGAAGGACC 58.873 60.000 0.00 0.00 0.00 4.46
1999 2170 1.258445 GGACCTCATCCGTGACACCT 61.258 60.000 0.00 0.00 37.88 4.00
2002 2173 0.826715 CCTCATCCGTGACACCTGAT 59.173 55.000 0.00 0.00 0.00 2.90
2006 2177 3.031013 TCATCCGTGACACCTGATATGT 58.969 45.455 0.00 0.00 0.00 2.29
2008 2179 2.735151 TCCGTGACACCTGATATGTCT 58.265 47.619 0.00 0.00 45.58 3.41
2009 2180 2.688446 TCCGTGACACCTGATATGTCTC 59.312 50.000 0.00 2.52 45.58 3.36
2012 2183 4.371855 GTGACACCTGATATGTCTCGAA 57.628 45.455 6.68 0.00 45.58 3.71
2013 2184 4.938080 GTGACACCTGATATGTCTCGAAT 58.062 43.478 6.68 0.00 45.58 3.34
2016 2187 5.592688 TGACACCTGATATGTCTCGAATGTA 59.407 40.000 6.68 0.00 45.58 2.29
2018 2189 6.682746 ACACCTGATATGTCTCGAATGTATC 58.317 40.000 0.00 0.00 0.00 2.24
2019 2190 6.491745 ACACCTGATATGTCTCGAATGTATCT 59.508 38.462 0.00 0.00 0.00 1.98
2020 2191 7.665974 ACACCTGATATGTCTCGAATGTATCTA 59.334 37.037 0.00 0.00 0.00 1.98
2022 2193 9.907229 ACCTGATATGTCTCGAATGTATCTATA 57.093 33.333 0.00 0.00 0.00 1.31
2084 2255 8.870160 TGGATGTTTTATATGCAATTACAAGC 57.130 30.769 0.00 0.00 0.00 4.01
2085 2256 8.473219 TGGATGTTTTATATGCAATTACAAGCA 58.527 29.630 0.00 0.00 45.92 3.91
2119 2290 9.990868 ATCAATTTGGGACTAACCTATTAACTT 57.009 29.630 0.00 0.00 38.98 2.66
2124 2295 6.881570 TGGGACTAACCTATTAACTTAGTGC 58.118 40.000 0.00 0.00 37.83 4.40
2125 2296 6.286758 GGGACTAACCTATTAACTTAGTGCC 58.713 44.000 10.42 10.42 45.79 5.01
2126 2297 6.881570 GGACTAACCTATTAACTTAGTGCCA 58.118 40.000 0.00 0.00 34.47 4.92
2128 2299 7.494952 GGACTAACCTATTAACTTAGTGCCAAG 59.505 40.741 0.00 0.00 34.47 3.61
2129 2300 7.914859 ACTAACCTATTAACTTAGTGCCAAGT 58.085 34.615 0.00 0.00 40.49 3.16
2131 2302 4.941873 ACCTATTAACTTAGTGCCAAGTGC 59.058 41.667 0.00 0.00 38.74 4.40
2132 2303 5.186198 CCTATTAACTTAGTGCCAAGTGCT 58.814 41.667 0.00 0.00 38.74 4.40
2133 2304 6.070424 ACCTATTAACTTAGTGCCAAGTGCTA 60.070 38.462 0.00 0.00 38.74 3.49
2134 2305 6.480320 CCTATTAACTTAGTGCCAAGTGCTAG 59.520 42.308 0.00 0.00 38.74 3.42
2135 2306 3.771577 AACTTAGTGCCAAGTGCTAGT 57.228 42.857 0.00 0.00 38.74 2.57
2136 2307 3.771577 ACTTAGTGCCAAGTGCTAGTT 57.228 42.857 0.00 0.00 42.00 2.24
2137 2308 3.403038 ACTTAGTGCCAAGTGCTAGTTG 58.597 45.455 0.00 0.00 42.00 3.16
2138 2309 3.181454 ACTTAGTGCCAAGTGCTAGTTGT 60.181 43.478 0.00 0.00 42.00 3.32
2139 2310 2.348411 AGTGCCAAGTGCTAGTTGTT 57.652 45.000 0.00 0.00 42.00 2.83
2140 2311 1.949525 AGTGCCAAGTGCTAGTTGTTG 59.050 47.619 0.00 0.00 42.00 3.33
2141 2312 1.676006 GTGCCAAGTGCTAGTTGTTGT 59.324 47.619 0.00 0.00 42.00 3.32
2142 2313 2.099098 GTGCCAAGTGCTAGTTGTTGTT 59.901 45.455 0.00 0.00 42.00 2.83
2145 2316 4.180817 GCCAAGTGCTAGTTGTTGTTTTT 58.819 39.130 0.00 0.00 36.87 1.94
2180 2916 6.785076 TGGTTTTCCAGAATATCAGTACCAA 58.215 36.000 0.00 0.00 46.22 3.67
2181 2917 7.235079 TGGTTTTCCAGAATATCAGTACCAAA 58.765 34.615 0.00 0.00 46.22 3.28
2182 2918 7.175990 TGGTTTTCCAGAATATCAGTACCAAAC 59.824 37.037 0.00 0.00 46.22 2.93
2183 2919 6.978343 TTTCCAGAATATCAGTACCAAACG 57.022 37.500 0.00 0.00 0.00 3.60
2184 2920 5.925506 TCCAGAATATCAGTACCAAACGA 57.074 39.130 0.00 0.00 0.00 3.85
2186 2922 6.338146 TCCAGAATATCAGTACCAAACGAAG 58.662 40.000 0.00 0.00 0.00 3.79
2188 2924 6.255887 CCAGAATATCAGTACCAAACGAAGTC 59.744 42.308 0.00 0.00 45.00 3.01
2189 2925 6.255887 CAGAATATCAGTACCAAACGAAGTCC 59.744 42.308 0.00 0.00 45.00 3.85
2190 2926 5.670792 ATATCAGTACCAAACGAAGTCCA 57.329 39.130 0.00 0.00 45.00 4.02
2192 2928 4.139859 TCAGTACCAAACGAAGTCCAAA 57.860 40.909 0.00 0.00 45.00 3.28
2193 2929 4.710324 TCAGTACCAAACGAAGTCCAAAT 58.290 39.130 0.00 0.00 45.00 2.32
2194 2930 4.513692 TCAGTACCAAACGAAGTCCAAATG 59.486 41.667 0.00 0.00 45.00 2.32
2195 2931 2.793278 ACCAAACGAAGTCCAAATGC 57.207 45.000 0.00 0.00 45.00 3.56
2196 2932 1.339929 ACCAAACGAAGTCCAAATGCC 59.660 47.619 0.00 0.00 45.00 4.40
2197 2933 1.339610 CCAAACGAAGTCCAAATGCCA 59.660 47.619 0.00 0.00 45.00 4.92
2198 2934 2.393764 CAAACGAAGTCCAAATGCCAC 58.606 47.619 0.00 0.00 45.00 5.01
2199 2935 1.686355 AACGAAGTCCAAATGCCACA 58.314 45.000 0.00 0.00 45.00 4.17
2200 2936 1.686355 ACGAAGTCCAAATGCCACAA 58.314 45.000 0.00 0.00 29.74 3.33
2203 2939 2.794350 CGAAGTCCAAATGCCACAAAAC 59.206 45.455 0.00 0.00 0.00 2.43
2204 2940 3.490761 CGAAGTCCAAATGCCACAAAACT 60.491 43.478 0.00 0.00 0.00 2.66
2206 2942 5.564651 CGAAGTCCAAATGCCACAAAACTAT 60.565 40.000 0.00 0.00 0.00 2.12
2207 2943 5.806654 AGTCCAAATGCCACAAAACTATT 57.193 34.783 0.00 0.00 0.00 1.73
2239 3036 7.996098 TTTTTATAGACAAAAGAGACCCTGG 57.004 36.000 0.00 0.00 0.00 4.45
2241 3038 6.945636 TTATAGACAAAAGAGACCCTGGAA 57.054 37.500 0.00 0.00 0.00 3.53
2242 3039 3.778954 AGACAAAAGAGACCCTGGAAG 57.221 47.619 0.00 0.00 0.00 3.46
2243 3040 2.155279 GACAAAAGAGACCCTGGAAGC 58.845 52.381 0.00 0.00 0.00 3.86
2245 3042 2.175715 ACAAAAGAGACCCTGGAAGCTT 59.824 45.455 0.00 0.00 0.00 3.74
2246 3043 2.816672 CAAAAGAGACCCTGGAAGCTTC 59.183 50.000 18.54 18.54 0.00 3.86
2247 3044 1.734655 AAGAGACCCTGGAAGCTTCA 58.265 50.000 27.02 12.69 0.00 3.02
2248 3045 1.274712 AGAGACCCTGGAAGCTTCAG 58.725 55.000 27.02 20.20 0.00 3.02
2257 3054 1.203237 TGGAAGCTTCAGGAGAGGTCT 60.203 52.381 27.02 0.00 0.00 3.85
2258 3055 2.043115 TGGAAGCTTCAGGAGAGGTCTA 59.957 50.000 27.02 0.00 0.00 2.59
2259 3056 2.693074 GGAAGCTTCAGGAGAGGTCTAG 59.307 54.545 27.02 0.00 0.00 2.43
2261 3058 3.748645 AGCTTCAGGAGAGGTCTAGAA 57.251 47.619 0.00 0.00 0.00 2.10
2262 3059 3.631250 AGCTTCAGGAGAGGTCTAGAAG 58.369 50.000 0.00 10.02 36.98 2.85
2264 3061 4.079212 AGCTTCAGGAGAGGTCTAGAAGAT 60.079 45.833 15.30 9.44 36.48 2.40
2265 3062 4.037923 GCTTCAGGAGAGGTCTAGAAGATG 59.962 50.000 15.30 0.00 36.48 2.90
2267 3064 5.458451 TCAGGAGAGGTCTAGAAGATGAA 57.542 43.478 0.00 0.00 0.00 2.57
2269 3066 4.584325 CAGGAGAGGTCTAGAAGATGAAGG 59.416 50.000 0.00 0.00 0.00 3.46
2270 3067 4.480537 AGGAGAGGTCTAGAAGATGAAGGA 59.519 45.833 0.00 0.00 0.00 3.36
2271 3068 5.136048 AGGAGAGGTCTAGAAGATGAAGGAT 59.864 44.000 0.00 0.00 0.00 3.24
2273 3070 7.007723 GGAGAGGTCTAGAAGATGAAGGATAA 58.992 42.308 0.00 0.00 0.00 1.75
2274 3071 7.673926 GGAGAGGTCTAGAAGATGAAGGATAAT 59.326 40.741 0.00 0.00 0.00 1.28
2275 3072 8.650143 AGAGGTCTAGAAGATGAAGGATAATC 57.350 38.462 0.00 0.00 0.00 1.75
2276 3073 7.673926 AGAGGTCTAGAAGATGAAGGATAATCC 59.326 40.741 0.00 0.00 36.58 3.01
2277 3074 6.728632 AGGTCTAGAAGATGAAGGATAATCCC 59.271 42.308 0.00 0.00 37.19 3.85
2278 3075 6.498651 GGTCTAGAAGATGAAGGATAATCCCA 59.501 42.308 0.00 0.00 37.19 4.37
2279 3076 7.382898 GTCTAGAAGATGAAGGATAATCCCAC 58.617 42.308 0.00 0.00 37.19 4.61
2280 3077 5.220710 AGAAGATGAAGGATAATCCCACG 57.779 43.478 0.00 0.00 37.19 4.94
2281 3078 4.901849 AGAAGATGAAGGATAATCCCACGA 59.098 41.667 0.00 0.00 37.19 4.35
2282 3079 4.881019 AGATGAAGGATAATCCCACGAG 57.119 45.455 0.00 0.00 37.19 4.18
2284 3081 1.416401 TGAAGGATAATCCCACGAGGC 59.584 52.381 0.00 0.00 37.19 4.70
2285 3082 1.416401 GAAGGATAATCCCACGAGGCA 59.584 52.381 0.00 0.00 37.19 4.75
2286 3083 0.759346 AGGATAATCCCACGAGGCAC 59.241 55.000 0.00 0.00 37.19 5.01
2287 3084 1.692762 AGGATAATCCCACGAGGCACT 60.693 52.381 0.00 0.00 38.67 4.40
2288 3085 1.968493 GGATAATCCCACGAGGCACTA 59.032 52.381 0.00 0.00 41.55 2.74
2289 3086 2.028930 GGATAATCCCACGAGGCACTAG 60.029 54.545 0.00 0.00 41.55 2.57
2290 3087 1.410004 TAATCCCACGAGGCACTAGG 58.590 55.000 0.00 0.00 41.55 3.02
2294 3091 2.735772 CCACGAGGCACTAGGGCAT 61.736 63.158 20.77 12.97 46.44 4.40
2295 3092 1.522355 CACGAGGCACTAGGGCATG 60.522 63.158 20.77 10.07 46.44 4.06
2296 3093 2.590007 CGAGGCACTAGGGCATGC 60.590 66.667 20.77 9.90 46.44 4.06
2300 3097 3.518003 GCACTAGGGCATGCCTTG 58.482 61.111 34.70 25.14 35.73 3.61
2301 3098 2.123428 GCACTAGGGCATGCCTTGG 61.123 63.158 34.70 30.99 35.73 3.61
2302 3099 1.304282 CACTAGGGCATGCCTTGGT 59.696 57.895 34.70 31.69 37.37 3.67
2303 3100 1.033746 CACTAGGGCATGCCTTGGTG 61.034 60.000 38.32 38.32 44.99 4.17
2321 3118 4.740822 GCTCGTGGGGCCCATGTT 62.741 66.667 37.33 0.00 41.03 2.71
2324 3121 3.061848 CGTGGGGCCCATGTTCAC 61.062 66.667 32.78 20.48 35.92 3.18
2325 3122 2.679996 GTGGGGCCCATGTTCACC 60.680 66.667 31.48 10.32 35.28 4.02
2327 3124 2.362889 GGGGCCCATGTTCACCTG 60.363 66.667 26.86 0.00 0.00 4.00
2328 3125 2.440599 GGGCCCATGTTCACCTGT 59.559 61.111 19.95 0.00 0.00 4.00
2330 3127 0.831711 GGGCCCATGTTCACCTGTTT 60.832 55.000 19.95 0.00 0.00 2.83
2331 3128 0.318120 GGCCCATGTTCACCTGTTTG 59.682 55.000 0.00 0.00 0.00 2.93
2335 3132 2.586425 CCATGTTCACCTGTTTGACCT 58.414 47.619 0.00 0.00 0.00 3.85
2336 3133 3.497763 CCCATGTTCACCTGTTTGACCTA 60.498 47.826 0.00 0.00 0.00 3.08
2337 3134 4.141287 CCATGTTCACCTGTTTGACCTAA 58.859 43.478 0.00 0.00 0.00 2.69
2338 3135 4.766891 CCATGTTCACCTGTTTGACCTAAT 59.233 41.667 0.00 0.00 0.00 1.73
2339 3136 5.243730 CCATGTTCACCTGTTTGACCTAATT 59.756 40.000 0.00 0.00 0.00 1.40
2343 3140 4.072131 TCACCTGTTTGACCTAATTCTGC 58.928 43.478 0.00 0.00 0.00 4.26
2344 3141 3.191371 CACCTGTTTGACCTAATTCTGCC 59.809 47.826 0.00 0.00 0.00 4.85
2345 3142 3.074538 ACCTGTTTGACCTAATTCTGCCT 59.925 43.478 0.00 0.00 0.00 4.75
2346 3143 3.691609 CCTGTTTGACCTAATTCTGCCTC 59.308 47.826 0.00 0.00 0.00 4.70
2347 3144 4.566488 CCTGTTTGACCTAATTCTGCCTCT 60.566 45.833 0.00 0.00 0.00 3.69
2348 3145 5.338381 CCTGTTTGACCTAATTCTGCCTCTA 60.338 44.000 0.00 0.00 0.00 2.43
2349 3146 6.313519 TGTTTGACCTAATTCTGCCTCTAT 57.686 37.500 0.00 0.00 0.00 1.98
2350 3147 7.419057 CCTGTTTGACCTAATTCTGCCTCTATA 60.419 40.741 0.00 0.00 0.00 1.31
2351 3148 7.857456 TGTTTGACCTAATTCTGCCTCTATAA 58.143 34.615 0.00 0.00 0.00 0.98
2352 3149 8.325787 TGTTTGACCTAATTCTGCCTCTATAAA 58.674 33.333 0.00 0.00 0.00 1.40
2356 3153 8.938883 TGACCTAATTCTGCCTCTATAAATTCT 58.061 33.333 0.00 0.00 0.00 2.40
2357 3154 9.430623 GACCTAATTCTGCCTCTATAAATTCTC 57.569 37.037 0.00 0.00 0.00 2.87
2358 3155 9.165057 ACCTAATTCTGCCTCTATAAATTCTCT 57.835 33.333 0.00 0.00 0.00 3.10
2365 3162 9.698309 TCTGCCTCTATAAATTCTCTAAAATCG 57.302 33.333 0.00 0.00 0.00 3.34
2367 3164 7.878127 TGCCTCTATAAATTCTCTAAAATCGGG 59.122 37.037 0.00 0.00 0.00 5.14
2368 3165 8.095169 GCCTCTATAAATTCTCTAAAATCGGGA 58.905 37.037 0.00 0.00 0.00 5.14
2369 3166 9.998106 CCTCTATAAATTCTCTAAAATCGGGAA 57.002 33.333 0.00 0.00 0.00 3.97
2386 3183 1.068588 GGAAACCAACAAAGAGCCACC 59.931 52.381 0.00 0.00 0.00 4.61
2387 3184 1.068588 GAAACCAACAAAGAGCCACCC 59.931 52.381 0.00 0.00 0.00 4.61
2388 3185 0.032615 AACCAACAAAGAGCCACCCA 60.033 50.000 0.00 0.00 0.00 4.51
2389 3186 0.032615 ACCAACAAAGAGCCACCCAA 60.033 50.000 0.00 0.00 0.00 4.12
2390 3187 1.118838 CCAACAAAGAGCCACCCAAA 58.881 50.000 0.00 0.00 0.00 3.28
2391 3188 1.484240 CCAACAAAGAGCCACCCAAAA 59.516 47.619 0.00 0.00 0.00 2.44
2392 3189 2.104622 CCAACAAAGAGCCACCCAAAAT 59.895 45.455 0.00 0.00 0.00 1.82
2394 3191 4.306600 CAACAAAGAGCCACCCAAAATAC 58.693 43.478 0.00 0.00 0.00 1.89
2395 3192 3.844640 ACAAAGAGCCACCCAAAATACT 58.155 40.909 0.00 0.00 0.00 2.12
2396 3193 4.223144 ACAAAGAGCCACCCAAAATACTT 58.777 39.130 0.00 0.00 0.00 2.24
2397 3194 4.653801 ACAAAGAGCCACCCAAAATACTTT 59.346 37.500 0.00 0.00 0.00 2.66
2398 3195 5.130311 ACAAAGAGCCACCCAAAATACTTTT 59.870 36.000 0.00 0.00 0.00 2.27
2399 3196 5.887214 AAGAGCCACCCAAAATACTTTTT 57.113 34.783 0.00 0.00 35.41 1.94
2400 3197 5.468540 AGAGCCACCCAAAATACTTTTTC 57.531 39.130 0.00 0.00 32.72 2.29
2401 3198 4.283467 AGAGCCACCCAAAATACTTTTTCC 59.717 41.667 0.00 0.00 32.72 3.13
2402 3199 3.970640 AGCCACCCAAAATACTTTTTCCA 59.029 39.130 0.00 0.00 32.72 3.53
2403 3200 4.410555 AGCCACCCAAAATACTTTTTCCAA 59.589 37.500 0.00 0.00 32.72 3.53
2405 3202 5.181056 GCCACCCAAAATACTTTTTCCAATG 59.819 40.000 0.00 0.00 32.72 2.82
2407 3204 5.181056 CACCCAAAATACTTTTTCCAATGCC 59.819 40.000 0.00 0.00 32.72 4.40
2408 3205 4.391523 CCCAAAATACTTTTTCCAATGCCG 59.608 41.667 0.00 0.00 32.72 5.69
2409 3206 4.142924 CCAAAATACTTTTTCCAATGCCGC 60.143 41.667 0.00 0.00 32.72 6.53
2411 3208 3.951775 ATACTTTTTCCAATGCCGCAA 57.048 38.095 0.00 0.00 0.00 4.85
2412 3209 2.153366 ACTTTTTCCAATGCCGCAAG 57.847 45.000 0.00 0.00 0.00 4.01
2414 3211 0.392336 TTTTTCCAATGCCGCAAGCT 59.608 45.000 0.00 0.00 44.23 3.74
2417 3214 0.895100 TTCCAATGCCGCAAGCTTCT 60.895 50.000 0.00 0.00 44.23 2.85
2419 3216 1.027357 CCAATGCCGCAAGCTTCTAT 58.973 50.000 0.00 0.00 44.23 1.98
2421 3218 2.542411 CCAATGCCGCAAGCTTCTATTC 60.542 50.000 0.00 0.00 44.23 1.75
2422 3219 2.338577 ATGCCGCAAGCTTCTATTCT 57.661 45.000 0.00 0.00 44.23 2.40
2423 3220 1.656652 TGCCGCAAGCTTCTATTCTC 58.343 50.000 0.00 0.00 44.23 2.87
2424 3221 0.579156 GCCGCAAGCTTCTATTCTCG 59.421 55.000 0.00 0.00 38.99 4.04
2425 3222 1.802880 GCCGCAAGCTTCTATTCTCGA 60.803 52.381 0.00 0.00 38.99 4.04
2427 3224 2.223595 CCGCAAGCTTCTATTCTCGAGA 60.224 50.000 12.08 12.08 0.00 4.04
2428 3225 3.042189 CGCAAGCTTCTATTCTCGAGAG 58.958 50.000 15.94 4.43 0.00 3.20
2429 3226 3.488384 CGCAAGCTTCTATTCTCGAGAGT 60.488 47.826 15.94 15.59 0.00 3.24
2431 3228 4.867608 GCAAGCTTCTATTCTCGAGAGTTT 59.132 41.667 16.16 7.70 0.00 2.66
2432 3229 5.005299 GCAAGCTTCTATTCTCGAGAGTTTC 59.995 44.000 16.16 3.30 0.00 2.78
2433 3230 5.257082 AGCTTCTATTCTCGAGAGTTTCC 57.743 43.478 16.16 3.04 0.00 3.13
2434 3231 4.707448 AGCTTCTATTCTCGAGAGTTTCCA 59.293 41.667 16.16 0.00 0.00 3.53
2435 3232 5.362430 AGCTTCTATTCTCGAGAGTTTCCAT 59.638 40.000 16.16 7.95 0.00 3.41
2436 3233 5.689961 GCTTCTATTCTCGAGAGTTTCCATC 59.310 44.000 16.16 0.15 0.00 3.51
2437 3234 6.460953 GCTTCTATTCTCGAGAGTTTCCATCT 60.461 42.308 16.16 0.00 0.00 2.90
2439 3236 3.876274 TTCTCGAGAGTTTCCATCTGG 57.124 47.619 15.94 0.00 0.00 3.86
2440 3237 3.087370 TCTCGAGAGTTTCCATCTGGA 57.913 47.619 12.08 0.00 43.73 3.86
2442 3239 2.100584 CTCGAGAGTTTCCATCTGGAGG 59.899 54.545 6.58 0.00 46.36 4.30
2443 3240 1.472376 CGAGAGTTTCCATCTGGAGGC 60.472 57.143 0.00 0.00 46.36 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 74 6.111382 CAGGATTATGTTGGATAGCATCGAT 58.889 40.000 0.00 0.00 0.00 3.59
96 100 1.972588 AATGCCCTTGTCCTACTCCT 58.027 50.000 0.00 0.00 0.00 3.69
179 184 6.294231 CGTGTCAGTAAGATAGGCTCATACAT 60.294 42.308 0.00 0.00 31.81 2.29
197 202 4.655527 GTCTGGTGGACGTGTCAG 57.344 61.111 0.00 0.00 35.07 3.51
247 252 2.029073 CAACAGGACGCTGTCGGT 59.971 61.111 0.00 2.10 40.69 4.69
355 366 3.149196 CAAGCTCCTTGCCAGAAAGTTA 58.851 45.455 0.00 0.00 44.23 2.24
446 475 0.390472 CCGTGAAGAAGACCTCCAGC 60.390 60.000 0.00 0.00 0.00 4.85
493 523 1.682451 TTGCCGGGGGATAACTCGAG 61.682 60.000 11.84 11.84 0.00 4.04
518 548 4.803426 GCAGCCCTCCAGACGACG 62.803 72.222 0.00 0.00 0.00 5.12
854 903 1.633945 AGCGAAAGGGGGTAAATGAGT 59.366 47.619 0.00 0.00 0.00 3.41
1079 1134 2.100584 ACAATTTTGTTCTTCCGCAGCA 59.899 40.909 0.00 0.00 38.47 4.41
1117 1172 4.268687 CACCAAGTCCTCGTGCTC 57.731 61.111 0.00 0.00 0.00 4.26
1145 1200 3.016971 CCCTCCCCCACATGAGCA 61.017 66.667 0.00 0.00 0.00 4.26
1170 1225 3.834013 TTGTGGCGCGTGATGGGAA 62.834 57.895 8.43 0.00 0.00 3.97
1178 1233 1.298859 GAGGAAGATTTGTGGCGCGT 61.299 55.000 8.43 0.00 0.00 6.01
1233 1289 6.319152 TCTTGGAAAAGAAATACGTGGTGAAA 59.681 34.615 0.00 0.00 0.00 2.69
1250 1306 5.815222 CCATACGTGTACATGATCTTGGAAA 59.185 40.000 21.82 0.00 0.00 3.13
1312 1401 2.874086 TGTGTGCAAAGACAGACATGAG 59.126 45.455 0.00 0.00 38.75 2.90
1313 1402 2.916640 TGTGTGCAAAGACAGACATGA 58.083 42.857 0.00 0.00 38.75 3.07
1354 1443 3.358707 GGCAACGTTGGGCGCTAA 61.359 61.111 28.33 0.00 46.11 3.09
1359 1448 2.597510 AAGAGGGCAACGTTGGGC 60.598 61.111 28.33 20.04 37.60 5.36
1396 1486 0.388649 GGACGTCTGCTTCGATGTGT 60.389 55.000 16.46 0.00 33.50 3.72
1398 1488 1.215647 GGGACGTCTGCTTCGATGT 59.784 57.895 16.46 0.23 35.93 3.06
1399 1489 0.108615 AAGGGACGTCTGCTTCGATG 60.109 55.000 16.46 0.00 0.00 3.84
1400 1490 0.173708 GAAGGGACGTCTGCTTCGAT 59.826 55.000 16.46 0.00 33.08 3.59
1401 1491 1.585006 GAAGGGACGTCTGCTTCGA 59.415 57.895 16.46 0.00 33.08 3.71
1402 1492 1.446272 GGAAGGGACGTCTGCTTCG 60.446 63.158 16.46 0.00 36.94 3.79
1403 1493 0.390472 CTGGAAGGGACGTCTGCTTC 60.390 60.000 16.46 3.85 36.94 3.86
1421 1511 1.452108 GGAGCCAAGTAATGCCGCT 60.452 57.895 0.00 0.00 30.35 5.52
1449 1540 1.068943 TGGGGTAGGTTTCCTTGGCA 61.069 55.000 0.00 0.00 34.61 4.92
1463 1554 2.604382 GCAGTTGGCCATTGGGGT 60.604 61.111 6.09 0.00 39.65 4.95
1464 1555 1.963464 GATGCAGTTGGCCATTGGGG 61.963 60.000 6.09 0.00 43.89 4.96
1465 1556 0.974010 AGATGCAGTTGGCCATTGGG 60.974 55.000 6.09 0.00 43.89 4.12
1468 1559 2.291153 ACACTAGATGCAGTTGGCCATT 60.291 45.455 6.09 0.00 43.89 3.16
1472 1563 1.089920 CCACACTAGATGCAGTTGGC 58.910 55.000 0.00 0.00 45.13 4.52
1479 1570 3.004106 GCCATTCATTCCACACTAGATGC 59.996 47.826 0.00 0.00 0.00 3.91
1480 1571 3.249320 CGCCATTCATTCCACACTAGATG 59.751 47.826 0.00 0.00 0.00 2.90
1485 1576 1.742761 CTCGCCATTCATTCCACACT 58.257 50.000 0.00 0.00 0.00 3.55
1487 1578 0.322366 TGCTCGCCATTCATTCCACA 60.322 50.000 0.00 0.00 0.00 4.17
1507 1598 2.489938 TCTTTTATCCAGCACCGCTT 57.510 45.000 0.00 0.00 36.40 4.68
1510 1601 1.334869 GGCATCTTTTATCCAGCACCG 59.665 52.381 0.00 0.00 0.00 4.94
1546 1638 1.065854 CCTTCTTCATCTTCGGCCAGT 60.066 52.381 2.24 0.00 0.00 4.00
1548 1640 0.984230 ACCTTCTTCATCTTCGGCCA 59.016 50.000 2.24 0.00 0.00 5.36
1555 1647 3.181456 GCTATGCTCCACCTTCTTCATCT 60.181 47.826 0.00 0.00 0.00 2.90
1626 1744 0.179134 AGGCGAAGTATGCGAGTCAC 60.179 55.000 0.00 0.00 42.52 3.67
1662 1780 2.393646 CTTCTCTTGTCCTAGAGGGGG 58.606 57.143 6.03 0.00 41.62 5.40
1665 1783 1.760029 GGCCTTCTCTTGTCCTAGAGG 59.240 57.143 0.00 0.00 41.62 3.69
1666 1784 2.430332 CTGGCCTTCTCTTGTCCTAGAG 59.570 54.545 3.32 0.00 42.46 2.43
1667 1785 2.461695 CTGGCCTTCTCTTGTCCTAGA 58.538 52.381 3.32 0.00 0.00 2.43
1668 1786 1.484240 CCTGGCCTTCTCTTGTCCTAG 59.516 57.143 3.32 0.00 0.00 3.02
1669 1787 1.573108 CCTGGCCTTCTCTTGTCCTA 58.427 55.000 3.32 0.00 0.00 2.94
1670 1788 1.846712 GCCTGGCCTTCTCTTGTCCT 61.847 60.000 7.66 0.00 0.00 3.85
1672 1790 0.905357 TAGCCTGGCCTTCTCTTGTC 59.095 55.000 16.57 0.00 0.00 3.18
1673 1791 0.908198 CTAGCCTGGCCTTCTCTTGT 59.092 55.000 16.57 0.00 0.00 3.16
1674 1792 0.179936 CCTAGCCTGGCCTTCTCTTG 59.820 60.000 16.57 0.00 0.00 3.02
1675 1793 0.043334 TCCTAGCCTGGCCTTCTCTT 59.957 55.000 16.57 0.00 0.00 2.85
1676 1794 0.689412 GTCCTAGCCTGGCCTTCTCT 60.689 60.000 16.57 0.00 0.00 3.10
1678 1796 0.637195 TAGTCCTAGCCTGGCCTTCT 59.363 55.000 16.57 9.55 0.00 2.85
1681 1799 0.042731 TTGTAGTCCTAGCCTGGCCT 59.957 55.000 16.57 7.37 0.00 5.19
1684 1802 2.159226 CGTTCTTGTAGTCCTAGCCTGG 60.159 54.545 0.00 0.00 0.00 4.45
1685 1803 2.735762 GCGTTCTTGTAGTCCTAGCCTG 60.736 54.545 0.00 0.00 0.00 4.85
1687 1805 1.203994 TGCGTTCTTGTAGTCCTAGCC 59.796 52.381 0.00 0.00 0.00 3.93
1688 1806 2.649331 TGCGTTCTTGTAGTCCTAGC 57.351 50.000 0.00 0.00 0.00 3.42
1689 1807 4.167268 GAGTTGCGTTCTTGTAGTCCTAG 58.833 47.826 0.00 0.00 0.00 3.02
1691 1856 2.364324 TGAGTTGCGTTCTTGTAGTCCT 59.636 45.455 0.00 0.00 0.00 3.85
1695 1860 3.740832 TGATGTGAGTTGCGTTCTTGTAG 59.259 43.478 0.00 0.00 0.00 2.74
1699 1864 3.402110 TCATGATGTGAGTTGCGTTCTT 58.598 40.909 0.00 0.00 31.80 2.52
1710 1875 0.176449 CGCTCACCCTCATGATGTGA 59.824 55.000 20.71 20.71 37.45 3.58
1711 1876 1.434622 GCGCTCACCCTCATGATGTG 61.435 60.000 15.81 15.81 0.00 3.21
1714 1879 1.145598 CAGCGCTCACCCTCATGAT 59.854 57.895 7.13 0.00 0.00 2.45
1715 1880 2.580815 CAGCGCTCACCCTCATGA 59.419 61.111 7.13 0.00 0.00 3.07
1716 1881 2.513204 CCAGCGCTCACCCTCATG 60.513 66.667 7.13 0.00 0.00 3.07
1735 1900 2.317609 CCGTCAACTTGGTGCCGAG 61.318 63.158 3.98 3.98 0.00 4.63
1736 1901 2.280524 CCGTCAACTTGGTGCCGA 60.281 61.111 0.00 0.00 0.00 5.54
1742 1907 2.616376 TGTTTCATCACCGTCAACTTGG 59.384 45.455 0.00 0.00 0.00 3.61
1746 1911 4.510340 ACTTAGTGTTTCATCACCGTCAAC 59.490 41.667 0.00 0.00 38.91 3.18
1750 1915 3.323979 AGGACTTAGTGTTTCATCACCGT 59.676 43.478 0.00 0.00 38.91 4.83
1759 1924 2.224548 GGTGGCAGAGGACTTAGTGTTT 60.225 50.000 0.00 0.00 0.00 2.83
1761 1926 0.977395 GGTGGCAGAGGACTTAGTGT 59.023 55.000 0.00 0.00 0.00 3.55
1767 1932 2.203907 AGCTGGTGGCAGAGGACT 60.204 61.111 0.00 0.00 44.79 3.85
1768 1933 1.835927 AAGAGCTGGTGGCAGAGGAC 61.836 60.000 0.00 0.00 44.79 3.85
1770 1935 1.078567 GAAGAGCTGGTGGCAGAGG 60.079 63.158 0.00 0.00 44.79 3.69
1773 1938 2.435586 CGGAAGAGCTGGTGGCAG 60.436 66.667 0.00 0.00 44.79 4.85
1774 1939 4.704833 GCGGAAGAGCTGGTGGCA 62.705 66.667 0.00 0.00 44.79 4.92
1775 1940 4.704833 TGCGGAAGAGCTGGTGGC 62.705 66.667 0.00 0.00 42.19 5.01
1776 1941 2.032528 TTGCGGAAGAGCTGGTGG 59.967 61.111 0.00 0.00 38.13 4.61
1777 1942 1.597854 TGTTGCGGAAGAGCTGGTG 60.598 57.895 0.00 0.00 38.13 4.17
1778 1943 1.598130 GTGTTGCGGAAGAGCTGGT 60.598 57.895 0.00 0.00 38.13 4.00
1779 1944 2.328099 GGTGTTGCGGAAGAGCTGG 61.328 63.158 8.75 0.00 38.13 4.85
1789 1954 2.051345 GAACTTGCCGGTGTTGCG 60.051 61.111 1.90 0.00 0.00 4.85
1790 1955 0.594796 CTTGAACTTGCCGGTGTTGC 60.595 55.000 1.90 2.29 0.00 4.17
1794 1959 0.738389 ACAACTTGAACTTGCCGGTG 59.262 50.000 1.90 0.00 0.00 4.94
1795 1960 1.021968 GACAACTTGAACTTGCCGGT 58.978 50.000 1.90 0.00 0.00 5.28
1796 1961 0.041312 CGACAACTTGAACTTGCCGG 60.041 55.000 0.00 0.00 0.00 6.13
1798 1963 0.317854 GCCGACAACTTGAACTTGCC 60.318 55.000 0.00 0.00 0.00 4.52
1801 1966 1.308998 CCTGCCGACAACTTGAACTT 58.691 50.000 0.00 0.00 0.00 2.66
1807 1972 2.113139 CACCCCTGCCGACAACTT 59.887 61.111 0.00 0.00 0.00 2.66
1808 1973 3.953775 CCACCCCTGCCGACAACT 61.954 66.667 0.00 0.00 0.00 3.16
1809 1974 4.265056 ACCACCCCTGCCGACAAC 62.265 66.667 0.00 0.00 0.00 3.32
1817 1982 2.198426 ACAAAGGCACCACCCCTG 59.802 61.111 0.00 0.00 40.58 4.45
1819 1984 3.615709 GCACAAAGGCACCACCCC 61.616 66.667 0.00 0.00 40.58 4.95
1820 1985 2.430610 TTGCACAAAGGCACCACCC 61.431 57.895 0.00 0.00 44.86 4.61
1827 1992 1.843992 CAGAGTTGTTGCACAAAGGC 58.156 50.000 3.74 0.00 40.15 4.35
1829 1994 2.857592 AGCAGAGTTGTTGCACAAAG 57.142 45.000 3.74 0.00 40.15 2.77
1830 1995 3.944650 TCTTAGCAGAGTTGTTGCACAAA 59.055 39.130 3.74 0.00 40.15 2.83
1831 1996 3.540617 TCTTAGCAGAGTTGTTGCACAA 58.459 40.909 0.00 0.00 43.92 3.33
1833 1998 4.470462 CATTCTTAGCAGAGTTGTTGCAC 58.530 43.478 0.00 0.00 43.92 4.57
1845 2010 8.922931 TCATTTCTATTATGGCATTCTTAGCA 57.077 30.769 4.78 0.00 0.00 3.49
1848 2013 8.742777 GGCATCATTTCTATTATGGCATTCTTA 58.257 33.333 4.78 0.00 39.47 2.10
1852 2017 6.722590 TCAGGCATCATTTCTATTATGGCATT 59.277 34.615 4.78 0.00 41.14 3.56
1853 2018 6.152323 GTCAGGCATCATTTCTATTATGGCAT 59.848 38.462 4.88 4.88 41.14 4.40
1854 2019 5.474532 GTCAGGCATCATTTCTATTATGGCA 59.525 40.000 9.87 0.00 41.14 4.92
1856 2021 6.349115 GCAGTCAGGCATCATTTCTATTATGG 60.349 42.308 0.00 0.00 0.00 2.74
1857 2022 6.206048 TGCAGTCAGGCATCATTTCTATTATG 59.794 38.462 0.00 0.00 39.25 1.90
1860 2025 4.529897 TGCAGTCAGGCATCATTTCTATT 58.470 39.130 0.00 0.00 39.25 1.73
1861 2026 4.160642 TGCAGTCAGGCATCATTTCTAT 57.839 40.909 0.00 0.00 39.25 1.98
1865 2030 2.418197 GCATTGCAGTCAGGCATCATTT 60.418 45.455 3.15 0.00 44.48 2.32
1866 2031 1.136305 GCATTGCAGTCAGGCATCATT 59.864 47.619 3.15 0.00 44.48 2.57
1868 2033 1.317431 GGCATTGCAGTCAGGCATCA 61.317 55.000 11.39 0.00 44.48 3.07
1875 2040 2.672651 CCGTGGGCATTGCAGTCA 60.673 61.111 11.39 2.86 0.00 3.41
1878 2043 2.563798 AACACCGTGGGCATTGCAG 61.564 57.895 11.39 0.00 0.00 4.41
1888 2053 4.619227 AGACCCCGCAACACCGTG 62.619 66.667 0.00 0.00 0.00 4.94
1892 2057 2.969300 TTCCCAAGACCCCGCAACAC 62.969 60.000 0.00 0.00 0.00 3.32
1893 2058 2.075355 ATTCCCAAGACCCCGCAACA 62.075 55.000 0.00 0.00 0.00 3.33
1898 2069 0.463116 CGGTTATTCCCAAGACCCCG 60.463 60.000 0.00 0.00 0.00 5.73
1901 2072 0.750546 GGGCGGTTATTCCCAAGACC 60.751 60.000 0.00 0.00 42.18 3.85
1903 2074 1.222387 CGGGCGGTTATTCCCAAGA 59.778 57.895 0.00 0.00 42.75 3.02
1904 2075 0.393267 TTCGGGCGGTTATTCCCAAG 60.393 55.000 0.00 0.00 42.75 3.61
1905 2076 0.393267 CTTCGGGCGGTTATTCCCAA 60.393 55.000 0.00 0.00 42.75 4.12
1909 2080 2.294728 CGTCTTCGGGCGGTTATTC 58.705 57.895 0.00 0.00 39.65 1.75
1910 2081 4.507879 CGTCTTCGGGCGGTTATT 57.492 55.556 0.00 0.00 39.65 1.40
1917 2088 2.029964 TTCACCACGTCTTCGGGC 59.970 61.111 0.00 0.00 39.39 6.13
1918 2089 1.068417 TGTTCACCACGTCTTCGGG 59.932 57.895 0.00 0.00 41.85 5.14
1942 2113 0.761323 TTCTCCACCAGGGTGTCGAA 60.761 55.000 16.74 14.44 44.02 3.71
1944 2115 1.293498 CTTCTCCACCAGGGTGTCG 59.707 63.158 16.74 7.63 44.02 4.35
1946 2117 2.529744 GCCTTCTCCACCAGGGTGT 61.530 63.158 16.74 0.00 44.02 4.16
1947 2118 2.352805 GCCTTCTCCACCAGGGTG 59.647 66.667 11.55 11.55 45.02 4.61
1948 2119 2.936032 GGCCTTCTCCACCAGGGT 60.936 66.667 0.00 0.00 38.11 4.34
1949 2120 2.276309 GATGGCCTTCTCCACCAGGG 62.276 65.000 11.34 0.00 39.25 4.45
1950 2121 1.225704 GATGGCCTTCTCCACCAGG 59.774 63.158 11.34 0.00 39.25 4.45
1951 2122 0.107312 CTGATGGCCTTCTCCACCAG 60.107 60.000 18.67 4.53 41.11 4.00
1954 2125 1.225704 CCCTGATGGCCTTCTCCAC 59.774 63.158 18.67 0.00 39.25 4.02
1955 2126 0.984961 CTCCCTGATGGCCTTCTCCA 60.985 60.000 18.67 0.00 40.97 3.86
1965 2136 1.127343 GGTCCTTCTCCTCCCTGATG 58.873 60.000 0.00 0.00 0.00 3.07
1966 2137 1.022903 AGGTCCTTCTCCTCCCTGAT 58.977 55.000 0.00 0.00 0.00 2.90
1973 2144 0.336737 ACGGATGAGGTCCTTCTCCT 59.663 55.000 15.26 0.00 45.46 3.69
1980 2151 1.218316 GGTGTCACGGATGAGGTCC 59.782 63.158 0.00 0.00 44.10 4.46
1984 2155 3.068732 ACATATCAGGTGTCACGGATGAG 59.931 47.826 15.34 11.09 34.75 2.90
1986 2157 3.068732 AGACATATCAGGTGTCACGGATG 59.931 47.826 15.34 6.97 46.46 3.51
1987 2158 3.300388 AGACATATCAGGTGTCACGGAT 58.700 45.455 11.92 11.92 46.46 4.18
1989 2160 3.085443 GAGACATATCAGGTGTCACGG 57.915 52.381 8.73 0.00 46.46 4.94
1991 2162 4.371855 TTCGAGACATATCAGGTGTCAC 57.628 45.455 8.73 0.00 46.46 3.67
1992 2163 4.402474 ACATTCGAGACATATCAGGTGTCA 59.598 41.667 8.73 0.00 46.46 3.58
1993 2164 4.938080 ACATTCGAGACATATCAGGTGTC 58.062 43.478 0.00 0.00 44.85 3.67
1994 2165 6.491745 AGATACATTCGAGACATATCAGGTGT 59.508 38.462 9.39 0.00 0.00 4.16
2058 2229 9.311916 GCTTGTAATTGCATATAAAACATCCAA 57.688 29.630 0.00 0.00 0.00 3.53
2059 2230 8.473219 TGCTTGTAATTGCATATAAAACATCCA 58.527 29.630 0.00 0.00 33.94 3.41
2060 2231 8.870160 TGCTTGTAATTGCATATAAAACATCC 57.130 30.769 0.00 0.00 33.94 3.51
2097 2268 9.901172 CACTAAGTTAATAGGTTAGTCCCAAAT 57.099 33.333 0.00 0.00 35.30 2.32
2098 2269 7.825761 GCACTAAGTTAATAGGTTAGTCCCAAA 59.174 37.037 0.00 0.00 35.30 3.28
2099 2270 7.333323 GCACTAAGTTAATAGGTTAGTCCCAA 58.667 38.462 0.00 0.00 35.30 4.12
2102 2273 6.881570 TGGCACTAAGTTAATAGGTTAGTCC 58.118 40.000 0.00 0.00 35.30 3.85
2104 2275 7.822822 CACTTGGCACTAAGTTAATAGGTTAGT 59.177 37.037 0.00 0.00 38.78 2.24
2105 2276 7.201617 GCACTTGGCACTAAGTTAATAGGTTAG 60.202 40.741 0.00 0.00 43.97 2.34
2106 2277 6.596497 GCACTTGGCACTAAGTTAATAGGTTA 59.404 38.462 0.00 0.00 43.97 2.85
2107 2278 5.414765 GCACTTGGCACTAAGTTAATAGGTT 59.585 40.000 0.00 0.00 43.97 3.50
2145 2316 5.746990 TCTGGAAAACCAAAAACAGGAAA 57.253 34.783 0.00 0.00 0.00 3.13
2146 2317 5.746990 TTCTGGAAAACCAAAAACAGGAA 57.253 34.783 0.00 0.00 0.00 3.36
2153 2889 7.726291 TGGTACTGATATTCTGGAAAACCAAAA 59.274 33.333 0.00 0.00 0.00 2.44
2159 2895 7.162761 TCGTTTGGTACTGATATTCTGGAAAA 58.837 34.615 0.00 0.00 0.00 2.29
2161 2897 6.288941 TCGTTTGGTACTGATATTCTGGAA 57.711 37.500 0.00 0.00 0.00 3.53
2162 2898 5.925506 TCGTTTGGTACTGATATTCTGGA 57.074 39.130 0.00 0.00 0.00 3.86
2164 2900 6.255887 GGACTTCGTTTGGTACTGATATTCTG 59.744 42.308 0.00 0.00 0.00 3.02
2165 2901 6.070995 TGGACTTCGTTTGGTACTGATATTCT 60.071 38.462 0.00 0.00 0.00 2.40
2168 2904 5.670792 TGGACTTCGTTTGGTACTGATAT 57.329 39.130 0.00 0.00 0.00 1.63
2170 2906 4.345859 TTGGACTTCGTTTGGTACTGAT 57.654 40.909 0.00 0.00 0.00 2.90
2171 2907 3.823281 TTGGACTTCGTTTGGTACTGA 57.177 42.857 0.00 0.00 0.00 3.41
2172 2908 4.783242 CATTTGGACTTCGTTTGGTACTG 58.217 43.478 0.00 0.00 0.00 2.74
2173 2909 3.252458 GCATTTGGACTTCGTTTGGTACT 59.748 43.478 0.00 0.00 0.00 2.73
2175 2911 2.554893 GGCATTTGGACTTCGTTTGGTA 59.445 45.455 0.00 0.00 0.00 3.25
2176 2912 1.339929 GGCATTTGGACTTCGTTTGGT 59.660 47.619 0.00 0.00 0.00 3.67
2178 2914 2.223688 TGTGGCATTTGGACTTCGTTTG 60.224 45.455 0.00 0.00 0.00 2.93
2180 2916 1.686355 TGTGGCATTTGGACTTCGTT 58.314 45.000 0.00 0.00 0.00 3.85
2181 2917 1.686355 TTGTGGCATTTGGACTTCGT 58.314 45.000 0.00 0.00 0.00 3.85
2182 2918 2.791383 TTTGTGGCATTTGGACTTCG 57.209 45.000 0.00 0.00 0.00 3.79
2183 2919 4.058721 AGTTTTGTGGCATTTGGACTTC 57.941 40.909 0.00 0.00 0.00 3.01
2184 2920 5.806654 ATAGTTTTGTGGCATTTGGACTT 57.193 34.783 0.00 0.00 0.00 3.01
2186 2922 6.226988 CAAATAGTTTTGTGGCATTTGGAC 57.773 37.500 0.00 0.00 37.92 4.02
2188 2924 5.610235 CCAAATAGTTTTGTGGCATTTGG 57.390 39.130 9.74 9.74 45.32 3.28
2189 2925 8.721019 ATATCCAAATAGTTTTGTGGCATTTG 57.279 30.769 0.00 0.00 40.55 2.32
2190 2926 9.737844 AAATATCCAAATAGTTTTGTGGCATTT 57.262 25.926 0.00 0.00 40.55 2.32
2192 2928 9.737844 AAAAATATCCAAATAGTTTTGTGGCAT 57.262 25.926 0.00 0.00 41.54 4.40
2215 2951 7.751646 TCCAGGGTCTCTTTTGTCTATAAAAA 58.248 34.615 0.00 0.00 0.00 1.94
2226 3023 2.443255 TGAAGCTTCCAGGGTCTCTTTT 59.557 45.455 23.42 0.00 0.00 2.27
2230 3027 0.251634 CCTGAAGCTTCCAGGGTCTC 59.748 60.000 25.46 3.74 45.66 3.36
2231 3028 2.381445 CCTGAAGCTTCCAGGGTCT 58.619 57.895 25.46 0.00 45.66 3.85
2237 3034 1.203237 AGACCTCTCCTGAAGCTTCCA 60.203 52.381 23.42 10.70 0.00 3.53
2238 3035 1.567357 AGACCTCTCCTGAAGCTTCC 58.433 55.000 23.42 6.48 0.00 3.46
2239 3036 3.626930 TCTAGACCTCTCCTGAAGCTTC 58.373 50.000 19.89 19.89 0.00 3.86
2241 3038 3.268334 TCTTCTAGACCTCTCCTGAAGCT 59.732 47.826 0.00 0.00 32.81 3.74
2242 3039 3.626930 TCTTCTAGACCTCTCCTGAAGC 58.373 50.000 0.00 0.00 32.81 3.86
2243 3040 5.445069 TCATCTTCTAGACCTCTCCTGAAG 58.555 45.833 0.00 0.00 33.41 3.02
2245 3042 5.445069 CTTCATCTTCTAGACCTCTCCTGA 58.555 45.833 0.00 0.00 0.00 3.86
2246 3043 4.584325 CCTTCATCTTCTAGACCTCTCCTG 59.416 50.000 0.00 0.00 0.00 3.86
2247 3044 4.480537 TCCTTCATCTTCTAGACCTCTCCT 59.519 45.833 0.00 0.00 0.00 3.69
2248 3045 4.798882 TCCTTCATCTTCTAGACCTCTCC 58.201 47.826 0.00 0.00 0.00 3.71
2249 3046 8.650143 ATTATCCTTCATCTTCTAGACCTCTC 57.350 38.462 0.00 0.00 0.00 3.20
2250 3047 7.673926 GGATTATCCTTCATCTTCTAGACCTCT 59.326 40.741 3.59 0.00 32.53 3.69
2251 3048 7.093509 GGGATTATCCTTCATCTTCTAGACCTC 60.094 44.444 11.40 0.00 36.57 3.85
2252 3049 6.728632 GGGATTATCCTTCATCTTCTAGACCT 59.271 42.308 11.40 0.00 36.57 3.85
2254 3051 7.382898 GTGGGATTATCCTTCATCTTCTAGAC 58.617 42.308 11.40 0.00 36.57 2.59
2257 3054 6.075315 TCGTGGGATTATCCTTCATCTTCTA 58.925 40.000 11.40 0.00 36.57 2.10
2258 3055 4.901849 TCGTGGGATTATCCTTCATCTTCT 59.098 41.667 11.40 0.00 36.57 2.85
2259 3056 5.215252 TCGTGGGATTATCCTTCATCTTC 57.785 43.478 11.40 0.00 36.57 2.87
2261 3058 3.580458 CCTCGTGGGATTATCCTTCATCT 59.420 47.826 11.40 0.00 36.57 2.90
2262 3059 3.866449 GCCTCGTGGGATTATCCTTCATC 60.866 52.174 11.40 0.00 36.57 2.92
2264 3061 1.416401 GCCTCGTGGGATTATCCTTCA 59.584 52.381 11.40 0.00 36.57 3.02
2265 3062 1.416401 TGCCTCGTGGGATTATCCTTC 59.584 52.381 11.40 3.99 36.57 3.46
2267 3064 0.759346 GTGCCTCGTGGGATTATCCT 59.241 55.000 11.40 0.00 36.57 3.24
2269 3066 2.028930 CCTAGTGCCTCGTGGGATTATC 60.029 54.545 5.54 0.00 35.69 1.75
2270 3067 1.971357 CCTAGTGCCTCGTGGGATTAT 59.029 52.381 5.54 0.00 35.69 1.28
2271 3068 1.410004 CCTAGTGCCTCGTGGGATTA 58.590 55.000 5.54 2.84 35.69 1.75
2273 3070 1.762460 CCCTAGTGCCTCGTGGGAT 60.762 63.158 5.54 0.00 40.23 3.85
2274 3071 2.363795 CCCTAGTGCCTCGTGGGA 60.364 66.667 5.54 0.00 40.23 4.37
2275 3072 4.162690 GCCCTAGTGCCTCGTGGG 62.163 72.222 5.54 0.00 40.74 4.61
2276 3073 2.735772 ATGCCCTAGTGCCTCGTGG 61.736 63.158 0.00 0.00 0.00 4.94
2277 3074 1.522355 CATGCCCTAGTGCCTCGTG 60.522 63.158 0.00 0.00 0.00 4.35
2278 3075 2.903357 CATGCCCTAGTGCCTCGT 59.097 61.111 0.00 0.00 0.00 4.18
2279 3076 2.590007 GCATGCCCTAGTGCCTCG 60.590 66.667 6.36 0.00 35.35 4.63
2284 3081 1.033746 CACCAAGGCATGCCCTAGTG 61.034 60.000 33.14 29.32 45.62 2.74
2285 3082 1.304282 CACCAAGGCATGCCCTAGT 59.696 57.895 33.14 23.41 45.62 2.57
2286 3083 1.454479 CCACCAAGGCATGCCCTAG 60.454 63.158 33.14 22.73 45.62 3.02
2287 3084 2.682846 CCACCAAGGCATGCCCTA 59.317 61.111 33.14 0.00 45.62 3.53
2296 3093 4.722700 CCCCACGAGCCACCAAGG 62.723 72.222 0.00 0.00 41.84 3.61
2306 3103 3.253061 TGAACATGGGCCCCACGA 61.253 61.111 22.27 0.00 35.80 4.35
2307 3104 3.061848 GTGAACATGGGCCCCACG 61.062 66.667 22.27 10.30 35.80 4.94
2309 3106 2.863484 AGGTGAACATGGGCCCCA 60.863 61.111 22.27 4.05 38.19 4.96
2311 3108 0.831711 AAACAGGTGAACATGGGCCC 60.832 55.000 17.59 17.59 30.95 5.80
2312 3109 0.318120 CAAACAGGTGAACATGGGCC 59.682 55.000 0.00 0.00 30.95 5.80
2314 3111 1.613437 GGTCAAACAGGTGAACATGGG 59.387 52.381 0.00 0.00 35.17 4.00
2315 3112 2.586425 AGGTCAAACAGGTGAACATGG 58.414 47.619 0.00 0.00 37.72 3.66
2318 3115 5.530915 CAGAATTAGGTCAAACAGGTGAACA 59.469 40.000 0.00 0.00 37.72 3.18
2320 3117 4.518970 GCAGAATTAGGTCAAACAGGTGAA 59.481 41.667 0.00 0.00 0.00 3.18
2321 3118 4.072131 GCAGAATTAGGTCAAACAGGTGA 58.928 43.478 0.00 0.00 0.00 4.02
2324 3121 3.690460 AGGCAGAATTAGGTCAAACAGG 58.310 45.455 0.00 0.00 0.00 4.00
2325 3122 4.583871 AGAGGCAGAATTAGGTCAAACAG 58.416 43.478 0.00 0.00 0.00 3.16
2327 3124 8.732746 TTTATAGAGGCAGAATTAGGTCAAAC 57.267 34.615 0.00 0.00 0.00 2.93
2328 3125 9.920946 AATTTATAGAGGCAGAATTAGGTCAAA 57.079 29.630 0.00 0.00 0.00 2.69
2330 3127 8.938883 AGAATTTATAGAGGCAGAATTAGGTCA 58.061 33.333 0.00 0.00 0.00 4.02
2331 3128 9.430623 GAGAATTTATAGAGGCAGAATTAGGTC 57.569 37.037 0.00 0.00 0.00 3.85
2339 3136 9.698309 CGATTTTAGAGAATTTATAGAGGCAGA 57.302 33.333 0.00 0.00 0.00 4.26
2343 3140 9.998106 TTCCCGATTTTAGAGAATTTATAGAGG 57.002 33.333 0.00 0.00 0.00 3.69
2347 3144 9.908747 TGGTTTCCCGATTTTAGAGAATTTATA 57.091 29.630 0.00 0.00 0.00 0.98
2348 3145 8.817092 TGGTTTCCCGATTTTAGAGAATTTAT 57.183 30.769 0.00 0.00 0.00 1.40
2349 3146 8.517056 GTTGGTTTCCCGATTTTAGAGAATTTA 58.483 33.333 0.00 0.00 0.00 1.40
2350 3147 7.014808 TGTTGGTTTCCCGATTTTAGAGAATTT 59.985 33.333 0.00 0.00 0.00 1.82
2351 3148 6.492087 TGTTGGTTTCCCGATTTTAGAGAATT 59.508 34.615 0.00 0.00 0.00 2.17
2352 3149 6.007703 TGTTGGTTTCCCGATTTTAGAGAAT 58.992 36.000 0.00 0.00 0.00 2.40
2356 3153 5.828859 TCTTTGTTGGTTTCCCGATTTTAGA 59.171 36.000 0.00 0.00 0.00 2.10
2357 3154 6.079424 TCTTTGTTGGTTTCCCGATTTTAG 57.921 37.500 0.00 0.00 0.00 1.85
2358 3155 5.508320 GCTCTTTGTTGGTTTCCCGATTTTA 60.508 40.000 0.00 0.00 0.00 1.52
2363 3160 1.314730 GCTCTTTGTTGGTTTCCCGA 58.685 50.000 0.00 0.00 0.00 5.14
2364 3161 0.313987 GGCTCTTTGTTGGTTTCCCG 59.686 55.000 0.00 0.00 0.00 5.14
2365 3162 1.068588 GTGGCTCTTTGTTGGTTTCCC 59.931 52.381 0.00 0.00 0.00 3.97
2367 3164 1.068588 GGGTGGCTCTTTGTTGGTTTC 59.931 52.381 0.00 0.00 0.00 2.78
2368 3165 1.119684 GGGTGGCTCTTTGTTGGTTT 58.880 50.000 0.00 0.00 0.00 3.27
2369 3166 0.032615 TGGGTGGCTCTTTGTTGGTT 60.033 50.000 0.00 0.00 0.00 3.67
2370 3167 0.032615 TTGGGTGGCTCTTTGTTGGT 60.033 50.000 0.00 0.00 0.00 3.67
2371 3168 1.118838 TTTGGGTGGCTCTTTGTTGG 58.881 50.000 0.00 0.00 0.00 3.77
2373 3170 4.223144 AGTATTTTGGGTGGCTCTTTGTT 58.777 39.130 0.00 0.00 0.00 2.83
2374 3171 3.844640 AGTATTTTGGGTGGCTCTTTGT 58.155 40.909 0.00 0.00 0.00 2.83
2375 3172 4.871933 AAGTATTTTGGGTGGCTCTTTG 57.128 40.909 0.00 0.00 0.00 2.77
2388 3185 8.210868 GCTTGCGGCATTGGAAAAAGTATTTT 62.211 38.462 2.28 0.00 45.38 1.82
2389 3186 4.264460 TGCGGCATTGGAAAAAGTATTT 57.736 36.364 0.00 0.00 42.41 1.40
2390 3187 3.951775 TGCGGCATTGGAAAAAGTATT 57.048 38.095 0.00 0.00 0.00 1.89
2391 3188 3.848726 CTTGCGGCATTGGAAAAAGTAT 58.151 40.909 2.28 0.00 0.00 2.12
2392 3189 2.609244 GCTTGCGGCATTGGAAAAAGTA 60.609 45.455 2.28 0.00 41.35 2.24
2394 3191 0.792031 GCTTGCGGCATTGGAAAAAG 59.208 50.000 2.28 0.00 41.35 2.27
2395 3192 0.392336 AGCTTGCGGCATTGGAAAAA 59.608 45.000 2.28 0.00 44.79 1.94
2396 3193 0.392336 AAGCTTGCGGCATTGGAAAA 59.608 45.000 2.28 0.00 44.79 2.29
2397 3194 0.038343 GAAGCTTGCGGCATTGGAAA 60.038 50.000 2.10 0.00 44.79 3.13
2398 3195 0.895100 AGAAGCTTGCGGCATTGGAA 60.895 50.000 2.10 0.00 44.79 3.53
2399 3196 0.035534 TAGAAGCTTGCGGCATTGGA 60.036 50.000 2.10 0.00 44.79 3.53
2400 3197 1.027357 ATAGAAGCTTGCGGCATTGG 58.973 50.000 2.10 0.00 44.79 3.16
2401 3198 2.357009 AGAATAGAAGCTTGCGGCATTG 59.643 45.455 2.10 0.91 44.79 2.82
2402 3199 2.615912 GAGAATAGAAGCTTGCGGCATT 59.384 45.455 2.10 0.00 44.79 3.56
2403 3200 2.216898 GAGAATAGAAGCTTGCGGCAT 58.783 47.619 2.10 0.00 44.79 4.40
2405 3202 0.579156 CGAGAATAGAAGCTTGCGGC 59.421 55.000 2.10 0.00 42.19 6.53
2407 3204 3.042189 CTCTCGAGAATAGAAGCTTGCG 58.958 50.000 17.36 0.00 0.00 4.85
2408 3205 4.040445 ACTCTCGAGAATAGAAGCTTGC 57.960 45.455 17.36 0.00 0.00 4.01
2409 3206 5.518487 GGAAACTCTCGAGAATAGAAGCTTG 59.482 44.000 17.36 3.02 0.00 4.01
2411 3208 4.707448 TGGAAACTCTCGAGAATAGAAGCT 59.293 41.667 17.36 0.00 0.00 3.74
2412 3209 5.000012 TGGAAACTCTCGAGAATAGAAGC 58.000 43.478 17.36 2.53 0.00 3.86
2414 3211 6.183360 CCAGATGGAAACTCTCGAGAATAGAA 60.183 42.308 17.36 1.30 37.39 2.10
2417 3214 5.201243 TCCAGATGGAAACTCTCGAGAATA 58.799 41.667 17.36 0.00 42.18 1.75
2419 3216 3.431415 TCCAGATGGAAACTCTCGAGAA 58.569 45.455 17.36 0.00 42.18 2.87
2421 3218 2.100584 CCTCCAGATGGAAACTCTCGAG 59.899 54.545 5.93 5.93 44.91 4.04
2422 3219 2.103373 CCTCCAGATGGAAACTCTCGA 58.897 52.381 2.65 0.00 44.91 4.04
2423 3220 1.472376 GCCTCCAGATGGAAACTCTCG 60.472 57.143 2.65 0.00 44.91 4.04
2424 3221 2.323968 GCCTCCAGATGGAAACTCTC 57.676 55.000 2.65 0.00 44.91 3.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.